Citrus Sinensis ID: 010883

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MKDEEALRSCIASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL
Secondary Structure (PSIPRED)
cccHHHHEEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccccccccccccEEEEEcccccccccccEEcccccccEEEEEEEEccEEEEEcccccEEEEcccccEEEEEcccccccEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEcccEEEEEEccccccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEccccccccccccccccccccccEEEEEEcccccEEEccccccEEEEEcccEEEEcccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEccccccccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHccHHHcccccHHcccccccccccccHHcccccccccccccccccHHHHHHHHHcccccccEEEcccccccccccEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccccEccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccccccEEEEcccccccEEEEEEcccccEEEEccccEEEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEccccEEEEEEEEc
Coil and Loop (DISEMBL)
MKDEEALRSCIAsgvdfdemgyAMSRFEIEsefydaadtvnqasnsrskfkkplsALDHEIAQLTklksepkehfskevpgkrhlpvSTVKMLagregnysgrgrfsaADCCHMLsrylpvngpwpvdqttsrAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRwtvtdtslspdqrhlvyasmspIVHIVDVGSGTMESLANVTeihdgldfsaaddggysfGIFSLKfstdgrelvagssddciYVYDLEANKLSLRILAHtsdvntvcfgdesghliysgsddnlckvwdrrclnvkgkpagvlmghlegitfidsrgdgrylisngkDQAIKLWDIRkmssnascnlgfrsyewdyrwmdyppqardlkhpcdqsvatykghSVLRTLIrchfspvystgqkyiytgshdscVYVYDLVSGEQVAALKyhtspvrdcswhpsqpmlvssswdgdvvrwefpgngeaapplnkkrirRRQFYL
Flexible Loop (DISEMBL)
mkdeealrsciasgvdfdemGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQltklksepkehfskevpgkrhlpvstVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFpgngeaapplnkkrirrrqfyl
Low Complexity Region (SEG)
MKDEEALRSCIASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL
Disordered region (IsUnstruct)
*********CIASGVDFDEMGYAMSRFEIESEFYD*********************************************************LA***GNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP*********************
Disordered Region (DISOPRED)
*****AL*SCIASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSK**KP*SALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL
Disordered Region (DISEMBL)
********SCIASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL
Disordered Region (DISPRO)
****EALRSCIASGVDFDEMGYAMSRFEIESEFYDAADT**Q***SRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKDEEALRSCIASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	498	2.2.26 [Sep-21-2011]
Q40153	473	LEC14B protein OS=Lithosp	N/A	no	0.949	1.0	0.696	0.0
O24467	475	LEC14B homolog OS=Prunus	N/A	no	0.945	0.991	0.681	0.0
Q8TEB1	546	DDB1- and CUL4-associated	yes	no	0.748	0.683	0.437	2e-88
Q5R7H5	546	DDB1- and CUL4-associated	yes	no	0.748	0.683	0.437	3e-88
Q5E9I8	546	DDB1- and CUL4-associated	yes	no	0.757	0.690	0.433	2e-87
Q5M9G8	549	DDB1- and CUL4-associated	yes	no	0.748	0.679	0.437	4e-87
Q91VU6	549	DDB1- and CUL4-associated	yes	no	0.761	0.690	0.436	4e-87
P90794	571	DDB1- and CUL4-associated	yes	no	0.789	0.688	0.361	3e-60
A8XEN7	554	DDB1- and CUL4-associated	N/A	no	0.738	0.664	0.353	9e-58
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.610	0.199	0.265	5e-20

>sp|Q40153|LE14B_LITER LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/474 (69%), Positives = 394/474 (83%), Gaps = 1/474 (0%)

Query: 20  MGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEV 79
           MGYAMSRFE +     ++ + +  ++  S   KP+  LDHEIAQLT+L+S P E+ S+++
Sbjct: 1   MGYAMSRFETDVSVIFSS-SSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDL 59

Query: 80  PGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF 139
             KR LP+ST+KMLAGRE N SGRGRFS+ADCCH++SR+LPVN P  VDQ TSR Y+SQF
Sbjct: 60  LVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTSRVYLSQF 119

Query: 140 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199
           S DGSLF+AGFQ   IRIY+V++GWK+Q DI+AK +RWT+TD SLSPDQ+ L YAS++PI
Sbjct: 120 STDGSLFIAGFQGCHIRIYNVDKGWKVQNDIIAKCVRWTITDASLSPDQKFLAYASLTPI 179

Query: 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 259
            HIV  GS   ES ANVT+IHDGLDFS+ DDGGYSFG+FS+KFSTDGRE+VAG+SD+ I 
Sbjct: 180 AHIVKFGSAATESHANVTDIHDGLDFSSNDDGGYSFGVFSIKFSTDGREIVAGTSDESIC 239

Query: 260 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 319
           VYDLEA++LSLRI AH SDVN+VCF DESGHLIYSGSDDNLCKVWDRRC N KGKPAG+L
Sbjct: 240 VYDLEADRLSLRISAHESDVNSVCFADESGHLIYSGSDDNLCKVWDRRCFNAKGKPAGIL 299

Query: 320 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 379
           MGHLEGITFIDSRGDGRY ISNGKDQ IKLWDIRKMSSNA   +  R+ EWDYRWM+YP 
Sbjct: 300 MGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRKMSSNAGGTIQSRNSEWDYRWMEYPQ 359

Query: 380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439
           +ARDLKHP D S ATYKGHSVL TLIRC+FSP YSTGQKYIYTGSHD+ VY+YDLV+G+Q
Sbjct: 360 EARDLKHPSDLSGATYKGHSVLCTLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLVTGDQ 419

Query: 440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 493
           V+ L+YH + VRDCSWHP+ PMLVSSS+DG++V+WE+ GN EA    N +R++R
Sbjct: 420 VSTLQYHKATVRDCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPVQGNNQRLQR 473

Lithospermum erythrorhizon (taxid: 34254)

>sp|O24467|LE14B_PRUAR LEC14B homolog OS=Prunus armeniaca PE=2 SV=1

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/474 (68%), Positives = 381/474 (80%), Gaps = 3/474 (0%)

Query: 25  SRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRH 84
           +RF  ++   D+ + V  + +S+    +  +  DHEIAQLTK +S P +  S+++PGK  
Sbjct: 5   TRFGKDNSACDSGNAVEGSGSSKGP-NEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSR 63

Query: 85  LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 144
           L VST+KML GRE N+SGRGRFS+AD CH+LSRYLP+NGPW VDQ+TS AYVSQFS DG 
Sbjct: 64  LLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTSPAYVSQFSNDGL 123

Query: 145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204
            FVAGFQ   IRIY+V++GWK+QKDIL KSLRWT+TDTSLSPDQR+LVYASM+PIV+IV+
Sbjct: 124 FFVAGFQGGHIRIYNVDKGWKVQKDILTKSLRWTITDTSLSPDQRYLVYASMTPIVNIVN 183

Query: 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264
           VGS   ESLANVTEIH+GLDFS   D    FGIFS++FSTDGRELVA S D  IYVYDL+
Sbjct: 184 VGSSMTESLANVTEIHEGLDFSVGGDED-EFGIFSVRFSTDGRELVAASRDASIYVYDLQ 242

Query: 265 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324
           ANK++LRI AH+SDVNTVCF DE+GHLIYSGSDDNLCKVWDRRC N KG+PAGVLMGHLE
Sbjct: 243 ANKVNLRIPAHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRCFNHKGQPAGVLMGHLE 302

Query: 325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 384
           G+TFIDSRGDGRY ISNGKDQ  +LWDIRKMSS A  +   R ++WDYRWM+YP  A+ L
Sbjct: 303 GVTFIDSRGDGRYFISNGKDQTTQLWDIRKMSSRAMYSPRLRDHDWDYRWMEYPAHAKTL 362

Query: 385 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 444
           KHP DQS+ATY+GH VLRTLIRC+ SP YSTGQKYIYTGS D CVY+YDLV+G QVA L 
Sbjct: 363 KHPNDQSLATYRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLN 422

Query: 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 498
           +H  PVRDCSWHP  PMLVSSSWDG + RWEFPG+ +  P L + R RR++  L
Sbjct: 423 HHEGPVRDCSWHPLYPMLVSSSWDGTIARWEFPGD-DQVPTLERPRARRKERLL 475

Prunus armeniaca (taxid: 36596)

>sp|Q8TEB1|DCA11_HUMAN DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1

 Score =  326 bits (836), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/393 (43%), Positives = 238/393 (60%), Gaps = 20/393 (5%)

Query: 91  KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 150
           +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191

Query: 151 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 208
           Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct: 192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251

Query: 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 268
                    + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query: 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGIT 327
           +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH +GIT
Sbjct: 300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGIT 359

Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RD 383
           FIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R 
Sbjct: 360 FIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRK 419

Query: 384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443
           LK P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L
Sbjct: 420 LKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKL 479

Query: 444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
             H + VRD SWHP +  +VSSSWDG++  W++
Sbjct: 480 TNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R7H5|DCA11_PONAB DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2

 Score =  325 bits (834), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 172/393 (43%), Positives = 238/393 (60%), Gaps = 20/393 (5%)

Query: 91  KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 150
           +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191

Query: 151 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 208
           Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct: 192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG 251

Query: 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 268
                    + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query: 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGIT 327
           +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH +GIT
Sbjct: 300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGIT 359

Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RD 383
           FIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R 
Sbjct: 360 FIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRK 419

Query: 384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443
           LK P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L
Sbjct: 420 LKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKL 479

Query: 444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
             H + VRD SWHP +  +VSSSWDG++  W++
Sbjct: 480 TNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q5E9I8|DCA11_BOVIN DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1

 Score =  323 bits (829), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/397 (43%), Positives = 239/397 (60%), Gaps = 20/397 (5%)

Query: 87  VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 146
           +S  +ML  RE     +G FS  +   ++S +LP N     D  + +A+   +S DG +F
Sbjct: 129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187

Query: 147 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205
           ++  Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++
Sbjct: 188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247

Query: 206 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264
            G G         + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E
Sbjct: 248 YGEG---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295

Query: 265 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHL 323
            N+ +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH 
Sbjct: 296 QNRRTLQIESHEDDVNAVAFADVSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQ 355

Query: 324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQ 380
           +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +
Sbjct: 356 DGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415

Query: 381 A-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439
           A R LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  
Sbjct: 416 AWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHV 475

Query: 440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
           V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct: 476 VKKLTTHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Bos taurus (taxid: 9913)

>sp|Q5M9G8|DCA11_RAT DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1

 Score =  322 bits (825), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 172/393 (43%), Positives = 234/393 (59%), Gaps = 20/393 (5%)

Query: 91  KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 150
           +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQIFMSAC 191

Query: 151 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 208
           Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S S  +HI  + G G
Sbjct: 192 QDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICSIYGEG 251

Query: 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 268
                    + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query: 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGIT 327
           +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH +GIT
Sbjct: 300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGIT 359

Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RD 383
           FIDS+GD RYLISN KDQ IKLWDIR+ SS     +  L      WDYRW   P +A + 
Sbjct: 360 FIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKKAWKK 419

Query: 384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443
           LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L
Sbjct: 420 LKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKL 479

Query: 444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
             H + VRD SWHP +  +VSSSWDG +  W++
Sbjct: 480 TNHKACVRDVSWHPFEEKIVSSSWDGSLRLWQY 512

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q91VU6|DCA11_MOUSE DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1

 Score =  322 bits (825), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/399 (43%), Positives = 237/399 (59%), Gaps = 20/399 (5%)

Query: 85  LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 144
           L  S  +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG 
Sbjct: 127 LQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQ 185

Query: 145 LFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203
           +F++  Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S S  +HI 
Sbjct: 186 IFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHIC 245

Query: 204 DV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 262
           ++ G G         + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D
Sbjct: 246 NIYGEG---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFD 293

Query: 263 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMG 321
            E N+ +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L G
Sbjct: 294 REQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAG 353

Query: 322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYP 378
           H +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS     +  L      WDYRW   P
Sbjct: 354 HQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVP 413

Query: 379 PQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437
             A + LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG
Sbjct: 414 KIAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSG 473

Query: 438 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
             V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct: 474 HIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1

 Score =  233 bits (593), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 152/420 (36%), Positives = 223/420 (53%), Gaps = 27/420 (6%)

Query: 81  GKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFS 140
           G R    + ++ +  R+    G    +      +L+ +LP N    VD+  ++++ +Q+ 
Sbjct: 115 GPRPSTSNNMEFILNRDLQKRGTSISNPRTVARVLNSHLP-NQKRRVDRVATKSFCTQYI 173

Query: 141 ADGSLFVAGFQASQIRIY--DVERGWKIQKDILAKSLR-----WTVTDTSLSPDQRHLVY 193
            +G+  V   Q  +IR Y  + ++     K + +  LR     W++ DT++S +   + Y
Sbjct: 174 QNGTKIVVASQDEKIRFYQRNPDKSKYRSKYMKSDELRVDQCGWSILDTAISLNGDLIAY 233

Query: 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 253
            +    V    VG        N+T     L+    + G     +F +KFS    ++V G+
Sbjct: 234 GTWKDAVF---VGKLDFTERQNITWFPIDLN---GEPGRDHCAVFCVKFSDSSEQIVCGT 287

Query: 254 SDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL-NV 311
           S   I+V+D+E  +    I+ AH  DVN+VCF D   +LIYS  DD L KVWD+R   + 
Sbjct: 288 SQYSIHVFDVEQRRRIRTIVNAHEDDVNSVCFADLGSNLIYSAGDDGLVKVWDKRAWSDG 347

Query: 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK---MSSNASCNLGFRSY 368
             +P GV  GH +G+T +DSR D RYL+SN KDQ IK+WD+RK   MS   +     +S 
Sbjct: 348 DVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTIKVWDLRKFSNMSGVEATRACVQSQ 407

Query: 369 EWDYRWMDYPPQARDLKHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 426
            WDYRW   PP    L  P   D SV T +GHSVL TL+R +FSP  STG++YIYTG   
Sbjct: 408 HWDYRWQPAPP---GLCQPVAGDTSVMTLRGHSVLHTLVRANFSP-ESTGRRYIYTGCAR 463

Query: 427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 484
             V VYD++SG     LK HT+ VR+C WHP++  +VSS+WDG   V  W+    G  AP
Sbjct: 464 GEVVVYDIMSGTVSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAP 523

Involved in regulation of lifespan.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XEN7|DCA11_CAEBR DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2

 Score =  224 bits (572), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 205/393 (52%), Gaps = 25/393 (6%)

Query: 106 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK 165
            ++A   H+L+ +LP N    VDQ  ++ + +Q+  +G   V   Q  +   +   +  K
Sbjct: 117 MTSASRAHLLNTHLP-NKKRRVDQLRTKNFCAQYIQNGRKMVVSSQGERENSFLSTKSGK 175

Query: 166 IQKDILAKSLRWTVT--------DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 217
           I+  +   S++ T          DT+++     + Y +    V+I     G ME   N  
Sbjct: 176 IEISLPILSMQRTPCGPLQLVDLDTAVNQQGDLISYCTWKDAVYI-----GRMEQEDNQN 230

Query: 218 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHT 276
                +D+           +F ++FS D  ++V G+S+  I+V+D+E  +    I+ AH 
Sbjct: 231 ITWFPIDWHGEHAVQNQCAVFCVRFSDDSEQIVCGTSEYSIHVFDVEQRRRIRTIVNAHE 290

Query: 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDG 335
            DVN+VCF D   +LIYS  DD L KVWD+R  +     P GV  GH +G+T++DSR D 
Sbjct: 291 DDVNSVCFADYGSNLIYSAGDDGLVKVWDKRAWSDGDVIPVGVFAGHRDGVTYVDSRQDE 350

Query: 336 RYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQ 390
           RYL+SN KDQ IK+WD+RK S      +     +S  WDYRW   PP    L  P   D 
Sbjct: 351 RYLLSNSKDQTIKVWDLRKFSCQGGVEATRACVQSQHWDYRWQPAPP---GLCQPVQGDT 407

Query: 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 450
           SV T +GHSVL TL+R  FSP  +TG+++IYTG     + VYD+V+G     LK H + V
Sbjct: 408 SVMTLRGHSVLHTLVRAKFSP-ENTGRRFIYTGCARGEIVVYDIVTGTVSRRLKGHQAVV 466

Query: 451 RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483
           R+C WHP +  +VS+SWDG    W +    E  
Sbjct: 467 RECDWHPQENEIVSTSWDGVTTVWTWDERAEGV 499

Involved in regulation of lifespan.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 99.8 bits (247), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 149/350 (42%), Gaps = 46/350 (13%)

Query: 139  FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198
            FS DG +  +G     +R++D+  G +  K     + R  V     SP+   L   S   
Sbjct: 914  FSQDGKMLASGSDDQTVRLWDISSG-QCLKTFKGHTSR--VRSVVFSPNSLMLASGSSDQ 970

Query: 199  IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 258
             V + D+ SG    +                  G++  ++S+ F+ DG  L  GS D  +
Sbjct: 971  TVRLWDISSGECLYIFQ----------------GHTGWVYSVAFNLDGSMLATGSGDQTV 1014

Query: 259  YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 318
             ++D+ +++       HTS V +V F  + G ++ SGSDD   ++WD       G     
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSSD-GAMLASGSDDQTVRLWDIS----SGNCLYT 1069

Query: 319  LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 378
            L GH   +  +    DG  L S G DQ ++LWDI    S+ +C    + Y    R++ + 
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDI----SSGNCLYTLQGYTSWVRFLVFS 1125

Query: 379  PQARDLKH-PCDQSVA-----------TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 426
            P    L +   DQ V            T +GH+     +   FSP  +T    + +GS D
Sbjct: 1126 PNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAV--AFSPDGAT----LASGSGD 1179

Query: 427  SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
              V ++D+ S + +  L+ HTS V    ++P    L S S D  V  WE 
Sbjct: 1180 QTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEI 1229

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
225436851	486	PREDICTED: LEC14B homolog [Vitis vinifer	0.951	0.975	0.807	0.0
224128636	488	predicted protein [Populus trichocarpa]	0.957	0.977	0.799	0.0
358248886	493	uncharacterized protein LOC100815163 [Gl	0.973	0.983	0.757	0.0
3924603	555	putative WD-repeat protein [Arabidopsis	0.965	0.866	0.762	0.0
22328262	493	transducin/WD40 domain-containing protei	0.971	0.981	0.760	0.0
297809835	493	transducin family protein [Arabidopsis l	0.971	0.981	0.758	0.0
357442621	495	LEC14B protein [Medicago truncatula] gi|	0.977	0.983	0.740	0.0
449462296	488	PREDICTED: LEC14B homolog [Cucumis sativ	0.973	0.993	0.741	0.0
449491526	488	PREDICTED: LOW QUALITY PROTEIN: LEC14B h	0.973	0.993	0.739	0.0
255567586	437	LEC14B protein, putative [Ricinus commun	0.877	1.0	0.705	0.0

>gi|225436851|ref|XP_002271734.1| PREDICTED: LEC14B homolog [Vitis vinifera]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/477 (80%), Positives = 429/477 (89%), Gaps = 3/477 (0%)

Query: 18  DEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSK 77
           +EMGYAMSR E++S+F DA   ++   N+  +  K L+ LDHEI+QLTKL+S P E  S+
Sbjct: 11  NEMGYAMSRLELDSDFCDAGKDIHGNDNTE-RLNKELNHLDHEISQLTKLRSGPHECLSQ 69

Query: 78  EVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS 137
            +PGKR  PVSTVKMLAGREGNYSGRGRFS+ADCCHMLSRYLPVNGPW VDQ TSRAYVS
Sbjct: 70  IIPGKRDSPVSTVKMLAGREGNYSGRGRFSSADCCHMLSRYLPVNGPWLVDQMTSRAYVS 129

Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           QFSADGSLFVAGFQ S IRIY+V+RGWK+QK+ILAKSLRWTVTDTSLSPDQRHLVYASMS
Sbjct: 130 QFSADGSLFVAGFQGSHIRIYNVDRGWKVQKNILAKSLRWTVTDTSLSPDQRHLVYASMS 189

Query: 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257
           PIVHIV++GS   ESLAN+TEIHDGLDFSAADD GYSFGIFS+KFSTDGRELVAGSSDD 
Sbjct: 190 PIVHIVNIGSAATESLANITEIHDGLDFSAADDEGYSFGIFSVKFSTDGRELVAGSSDDS 249

Query: 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 317
           IYVYDLEANKLSLRILAHTSDVNTVCF DESGHLIYSGSDD+LCKVWDRRC   KGKPAG
Sbjct: 250 IYVYDLEANKLSLRILAHTSDVNTVCFADESGHLIYSGSDDSLCKVWDRRCFISKGKPAG 309

Query: 318 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 377
           VLMGHLEGITFIDSRGDGR+LISN KDQ+IKLWDIRKMSSNA+C  GFR+YEWDYRWMDY
Sbjct: 310 VLMGHLEGITFIDSRGDGRHLISNSKDQSIKLWDIRKMSSNATCTPGFRNYEWDYRWMDY 369

Query: 378 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437
           P QAR+LKHPCDQS++TYKGHSVLRTLIRC+FSP YSTGQKYIY+GS DSC+Y+YDL++G
Sbjct: 370 PTQARELKHPCDQSLSTYKGHSVLRTLIRCYFSPSYSTGQKYIYSGSSDSCIYIYDLLTG 429

Query: 438 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRR 494
            QVA L++H S VRDC+WHP+ P+LVSSSWDGD+V+WEFPGNGE  PPL KKRIRR+
Sbjct: 430 AQVATLEHHKSVVRDCNWHPNYPILVSSSWDGDIVKWEFPGNGE--PPLIKKRIRRK 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128636|ref|XP_002320381.1| predicted protein [Populus trichocarpa] gi|222861154|gb|EEE98696.1| predicted protein [Populus trichocarpa]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/479 (79%), Positives = 414/479 (86%), Gaps = 2/479 (0%)

Query: 18  DEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSK 77
           DEMGYAMSR E ESE  D   T+ +A +S+ +    L+ LDHEIAQ+TKLKS P +  ++
Sbjct: 11  DEMGYAMSRLETESELCDGGKTIPEAGSSK-RASNWLNNLDHEIAQVTKLKSSPHKQLAE 69

Query: 78  EVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS 137
            VPG     VSTVKML GRE NYS RGRFSAAD CHMLSRYLPVNGPW VDQ ++RAYVS
Sbjct: 70  LVPGMHKSSVSTVKMLVGREANYSARGRFSAADRCHMLSRYLPVNGPWLVDQMSTRAYVS 129

Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           QFSADGSLFVAGFQ S IRIY+VE+GWK+QK+ILAKSLRWTVTDTSLSPDQRHLVYASMS
Sbjct: 130 QFSADGSLFVAGFQGSYIRIYNVEKGWKVQKNILAKSLRWTVTDTSLSPDQRHLVYASMS 189

Query: 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257
           PIVHIVD GS   ESLANVTE HDGLDFS+ D GGYSFGIFS+KFSTDGRELVAGS+DD 
Sbjct: 190 PIVHIVDAGSAETESLANVTEFHDGLDFSSGD-GGYSFGIFSVKFSTDGRELVAGSNDDS 248

Query: 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 317
           IYVYDLE NKLSLRILAHTSDVNTVCF DESGHLI+SGSDDNLCKVWDRRC   KGKPAG
Sbjct: 249 IYVYDLEQNKLSLRILAHTSDVNTVCFADESGHLIFSGSDDNLCKVWDRRCFIAKGKPAG 308

Query: 318 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 377
           VL GHLEGITFIDS GDGRY ISNGKDQ IKLWDIRKM+ NA+   G R+YEWDYRWMDY
Sbjct: 309 VLTGHLEGITFIDSHGDGRYFISNGKDQTIKLWDIRKMAPNATSYSGLRNYEWDYRWMDY 368

Query: 378 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437
           P +ARDLKHPCDQSVATYKGHSVLRTLIRC+FSPVYSTGQKYIYTGSHDSCVY+YDLV+G
Sbjct: 369 PYEARDLKHPCDQSVATYKGHSVLRTLIRCYFSPVYSTGQKYIYTGSHDSCVYIYDLVTG 428

Query: 438 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQF 496
           E V+ L++H SPVRDCSWHP  PMLVSSSWDGDVV+WEFPGNGEA  P  KKRIRRRQF
Sbjct: 429 ELVSLLQHHKSPVRDCSWHPYYPMLVSSSWDGDVVKWEFPGNGEAPVPSTKKRIRRRQF 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248886|ref|NP_001239957.1| uncharacterized protein LOC100815163 [Glycine max] gi|255636711|gb|ACU18691.1| unknown [Glycine max]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/486 (75%), Positives = 413/486 (84%), Gaps = 1/486 (0%)

Query: 12  ASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEP 71
           AS +  DEMGYAMSR EIES   +  D + + S+S  + K+PL  LD+EIAQ+TKLKS P
Sbjct: 5   ASALYIDEMGYAMSRLEIESGLSEDGDAIQEDSSS-GETKRPLKNLDNEIAQITKLKSTP 63

Query: 72  KEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTT 131
            +   +   G+  LPVS VKMLAGRE NYSGRGRFS+AD CH+LSRYLPVNGPW +DQ +
Sbjct: 64  HQQLVQVGTGRPELPVSPVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLIDQMS 123

Query: 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 191
           SRAYVSQFSADGSLF+AGFQ S IRIY+V+RGWK+QK+ILAK+LRWT+TDTSLSPDQR+L
Sbjct: 124 SRAYVSQFSADGSLFIAGFQGSHIRIYNVDRGWKVQKNILAKNLRWTITDTSLSPDQRYL 183

Query: 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251
           VYASMSPIVHIV+ GS   ESLANVTEIHDGLDFS+ DDGGYSFGIF +KFS DG+ELVA
Sbjct: 184 VYASMSPIVHIVNAGSAETESLANVTEIHDGLDFSSNDDGGYSFGIFCVKFSKDGKELVA 243

Query: 252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 311
           GSS D IYVYDLEANKLSLRILAHT DVNTVCF DE+ HLIYSGSDD+ CKVWDRRCL  
Sbjct: 244 GSSGDSIYVYDLEANKLSLRILAHTCDVNTVCFADETSHLIYSGSDDSFCKVWDRRCLIA 303

Query: 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 371
           KGKPAGVLMGHLEGITFID+RGDGRY ISNGKDQ IKLWDIRKMSSN + N G+RSYEWD
Sbjct: 304 KGKPAGVLMGHLEGITFIDTRGDGRYFISNGKDQTIKLWDIRKMSSNVTSNPGYRSYEWD 363

Query: 372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 431
           YRWMDYPPQA+DL HPCDQSVATY+GHSVLRTLIRC+FSP +STGQKYIYTGSH++CVY+
Sbjct: 364 YRWMDYPPQAKDLTHPCDQSVATYRGHSVLRTLIRCYFSPAFSTGQKYIYTGSHNACVYI 423

Query: 432 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRI 491
           YDLVSG QVA LK+H SPVRDCSWHP    LVSSSWDGDVV+WEF G+G+      KKR+
Sbjct: 424 YDLVSGAQVATLKHHKSPVRDCSWHPFHTTLVSSSWDGDVVKWEFAGSGDTPGSSTKKRV 483

Query: 492 RRRQFY 497
             R FY
Sbjct: 484 WTRHFY 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3924603|gb|AAC79104.1| putative WD-repeat protein [Arabidopsis thaliana] gi|7269787|emb|CAB77787.1| putative WD-repeat protein [Arabidopsis thaliana]

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/485 (76%), Positives = 423/485 (87%), Gaps = 4/485 (0%)

Query: 16  DFDEMGYAMSRFEIESEFYDAADTV--NQASNSRSKFKKPLSALDHEIAQLTKLKSEPKE 73
           D DEMGYAMSR EIES+  D    V    +S+   +  + L+ LDHEI+Q+TKLKS P +
Sbjct: 71  DADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSSPHQ 130

Query: 74  HFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSR 133
            +S+EVPG+  LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP  GPW VDQ  SR
Sbjct: 131 RYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQMDSR 190

Query: 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 193
           AYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLSPDQR+LVY
Sbjct: 191 AYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRNLVY 250

Query: 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 253
           ASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGRE+VAGS
Sbjct: 251 ASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGS 310

Query: 254 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 313
           SDD IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKVWDRRC   + 
Sbjct: 311 SDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRD 370

Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC-NLGFRSYEWDY 372
           KPAGVL+GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSS+A   +   R+YEWDY
Sbjct: 371 KPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDY 430

Query: 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 432
           RWMDYP +ARDLKHP DQSV+TYKGHSVLRTLIRC+FSP +STGQKYIYTGS+DS VY+Y
Sbjct: 431 RWMDYPTEARDLKHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIY 490

Query: 433 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIR 492
           DLVSG++VA LK+H+SPVRDC+WHP  P L+SSSWDGD+V+WEFPG+GE AP ++KKR+R
Sbjct: 491 DLVSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGE-APIMSKKRVR 549

Query: 493 RRQFY 497
           RR FY
Sbjct: 550 RRHFY 554

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328262|ref|NP_192211.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|334186335|ref|NP_001190666.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|20466538|gb|AAM20586.1| putative WD-repeat protein [Arabidopsis thaliana] gi|23198298|gb|AAN15676.1| putative WD-repeat protein [Arabidopsis thaliana] gi|332656861|gb|AEE82261.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332656862|gb|AEE82262.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/488 (76%), Positives = 424/488 (86%), Gaps = 4/488 (0%)

Query: 13  SGVDFDEMGYAMSRFEIESEFYDAADTV--NQASNSRSKFKKPLSALDHEIAQLTKLKSE 70
           S  D DEMGYAMSR EIES+  D    V    +S+   +  + L+ LDHEI+Q+TKLKS 
Sbjct: 6   SEFDADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSS 65

Query: 71  PKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQT 130
           P + +S+EVPG+  LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP  GPW VDQ 
Sbjct: 66  PHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQM 125

Query: 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190
            SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLSPDQR+
Sbjct: 126 DSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRN 185

Query: 191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250
           LVYASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGRE+V
Sbjct: 186 LVYASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVV 245

Query: 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310
           AGSSDD IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKVWDRRC  
Sbjct: 246 AGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFI 305

Query: 311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC-NLGFRSYE 369
            + KPAGVL+GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSS+A   +   R+YE
Sbjct: 306 GRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYE 365

Query: 370 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 429
           WDYRWMDYP +ARDLKHP DQSV+TYKGHSVLRTLIRC+FSP +STGQKYIYTGS+DS V
Sbjct: 366 WDYRWMDYPTEARDLKHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSV 425

Query: 430 YVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKK 489
           Y+YDLVSG++VA LK+H+SPVRDC+WHP  P L+SSSWDGD+V+WEFPG+GE AP ++KK
Sbjct: 426 YIYDLVSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGE-APIMSKK 484

Query: 490 RIRRRQFY 497
           R+RRR FY
Sbjct: 485 RVRRRHFY 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809835|ref|XP_002872801.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318638|gb|EFH49060.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/488 (75%), Positives = 425/488 (87%), Gaps = 4/488 (0%)

Query: 13  SGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFK--KPLSALDHEIAQLTKLKSE 70
           S +D DEMGYAMSR EIES+  D         +S +  +  + L+ LDHEI+Q+TKLKS 
Sbjct: 6   SEIDTDEMGYAMSRLEIESDLCDTGKDFCGVGSSSASHRSSEHLADLDHEISQVTKLKSS 65

Query: 71  PKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQT 130
           P + +S+EVPG+  LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP+ GPW VDQ 
Sbjct: 66  PHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPIKGPWLVDQM 125

Query: 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190
            SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLSPDQR+
Sbjct: 126 DSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRN 185

Query: 191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250
           LVYASMSPIVHIVDVGSGT ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGR++V
Sbjct: 186 LVYASMSPIVHIVDVGSGTTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGRDIV 245

Query: 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310
           AGSSDD IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKVWDRRC  
Sbjct: 246 AGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFI 305

Query: 311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC-NLGFRSYE 369
            + KPAGVL+GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSS+A   +   R+YE
Sbjct: 306 GRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYE 365

Query: 370 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 429
           WDYRWMDYP +ARDLKHP DQSV+TYKGHSVLRTLIRC+FSP +STGQKYIYTGS+DS V
Sbjct: 366 WDYRWMDYPTEARDLKHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSV 425

Query: 430 YVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKK 489
           Y+YDLVSG++VA LK+H+SPVRDC+WHP  P L+SSSWDGD+V+WEFPG+GE AP ++KK
Sbjct: 426 YIYDLVSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGE-APIMSKK 484

Query: 490 RIRRRQFY 497
           R+RRR FY
Sbjct: 485 RVRRRHFY 492

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442621|ref|XP_003591588.1| LEC14B protein [Medicago truncatula] gi|355480636|gb|AES61839.1| LEC14B protein [Medicago truncatula]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/490 (74%), Positives = 413/490 (84%), Gaps = 3/490 (0%)

Query: 10  CIASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKS 69
            I+  +  D+MGYAMSR +++S   +  + + + S S  K KK    LD+EIAQ+TKLKS
Sbjct: 3   AISGALYVDQMGYAMSRLDVDSSDTEDGNAILEDS-STGKAKKAFENLDNEIAQITKLKS 61

Query: 70  EPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQ 129
            P +    +  G++ LPVS VKMLAGRE N SGRGRFS+AD CH+LSRYLPVNGPWP+DQ
Sbjct: 62  TPHQLLVHDGSGRKELPVSPVKMLAGRESNCSGRGRFSSADRCHLLSRYLPVNGPWPIDQ 121

Query: 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 189
             SRAYVSQFSADGSLFVAGFQ + I+IY+VE+GWK+QK+IL KSLRWT+TDTSLSPDQ 
Sbjct: 122 MPSRAYVSQFSADGSLFVAGFQGNHIKIYNVEKGWKVQKNILTKSLRWTITDTSLSPDQS 181

Query: 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249
           HLVYASMSPIVHIV+VGS   ESLANVTEIHDGLDFS+ DDGGYSFGIFSLKFSTDG+EL
Sbjct: 182 HLVYASMSPIVHIVNVGSSETESLANVTEIHDGLDFSSNDDGGYSFGIFSLKFSTDGKEL 241

Query: 250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 309
           VAG+S D IYVYDLE NK+SLRILAHT+DVNTVCF DE+GHLIYSGSDD+ CKVWDRRCL
Sbjct: 242 VAGTSGDSIYVYDLETNKVSLRILAHTADVNTVCFADETGHLIYSGSDDSFCKVWDRRCL 301

Query: 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN--LGFRS 367
           N K KPAGVLMGHLEGITFIDSRGDGRY ISNGKDQ IKLWDIRKMSSN + N   G+RS
Sbjct: 302 NAKDKPAGVLMGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRKMSSNVTSNRVRGYRS 361

Query: 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 427
           +EWDYRWMDYPPQA+DL HPCDQSVATY+GHSVLRTL+RC FSP +STGQKYIYTGSH++
Sbjct: 362 FEWDYRWMDYPPQAKDLNHPCDQSVATYRGHSVLRTLVRCFFSPAFSTGQKYIYTGSHNA 421

Query: 428 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 487
           CVYVYDLVSG QVA LK+H SPVRDCSWHP  PMLVSSSWDGDVV+W+  G+ + A    
Sbjct: 422 CVYVYDLVSGAQVATLKHHKSPVRDCSWHPFHPMLVSSSWDGDVVKWQSAGSSDMAASSV 481

Query: 488 KKRIRRRQFY 497
           KKR+ +R FY
Sbjct: 482 KKRVNKRHFY 491

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462296|ref|XP_004148877.1| PREDICTED: LEC14B homolog [Cucumis sativus]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/487 (74%), Positives = 405/487 (83%), Gaps = 2/487 (0%)

Query: 11  IASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSE 70
           I S     +MGYA+SR EI S+     D    AS       KPL+ LD EIAQLT++KS 
Sbjct: 4   IPSWAIIGDMGYALSRLEIGSDC--DGDMSTSASGEAQVSNKPLNNLDDEIAQLTRMKSG 61

Query: 71  PKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQT 130
           P  H S+ +PGK  + +S VKMLAGRE NYSG+GRFSA DCCH+LSRYLPVNGPW VDQ 
Sbjct: 62  PSAHLSQVLPGKPEVYISPVKMLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLVDQM 121

Query: 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190
           TSRAYVSQFS+DGSLFVAGFQ S IRIY+V+ GWK+QK+ILAKSLRWT+TDTSLSPDQR+
Sbjct: 122 TSRAYVSQFSSDGSLFVAGFQGSHIRIYNVDSGWKVQKNILAKSLRWTITDTSLSPDQRY 181

Query: 191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250
           LVYASMSPI+HIV+V S   ESLANVTEIH+GLDF A  DG  SFGIFS+KFSTDGRELV
Sbjct: 182 LVYASMSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGRELV 241

Query: 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310
           AGSSDD IYVYDLE NKLSLRILAH SDVNTVCF DE+GHL+YSGSDD  CKVWDRRC  
Sbjct: 242 AGSSDDSIYVYDLETNKLSLRILAHRSDVNTVCFADETGHLVYSGSDDTFCKVWDRRCFI 301

Query: 311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370
            KGK AG+L GH+EGITFIDSRGDGRYLISNGKDQ IKLWDIRKMS+NA+     R+Y+W
Sbjct: 302 SKGKAAGILEGHVEGITFIDSRGDGRYLISNGKDQTIKLWDIRKMSNNATHYNRPRNYDW 361

Query: 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430
           DYRWMDYPP A++L HP D+S+ATYKGHSVLRTLIRC+FSP YSTGQKYIYTGSH+SCVY
Sbjct: 362 DYRWMDYPPHAKNLMHPRDRSLATYKGHSVLRTLIRCYFSPEYSTGQKYIYTGSHNSCVY 421

Query: 431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKR 490
           +YDL++G  VA LK+H SPVRDCSWHP  PMLVSSSWDGDVV+WEFPG+GEA  P NKKR
Sbjct: 422 IYDLLTGVLVATLKHHKSPVRDCSWHPQYPMLVSSSWDGDVVKWEFPGSGEAPTPPNKKR 481

Query: 491 IRRRQFY 497
           +RRR FY
Sbjct: 482 VRRRHFY 488

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491526|ref|XP_004158926.1| PREDICTED: LOW QUALITY PROTEIN: LEC14B homolog [Cucumis sativus]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/487 (73%), Positives = 404/487 (82%), Gaps = 2/487 (0%)

Query: 11  IASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSE 70
           I S     +MGYA+SR EI S+     D    AS       KPL+ LD EIAQLT++KS 
Sbjct: 4   IPSWAIIGDMGYALSRLEIGSDC--DGDMSTSASGEAQVSNKPLNNLDDEIAQLTRMKSG 61

Query: 71  PKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQT 130
           P  H S+ +PGK  + +S VKMLAGRE NYSG+GRFSA DCCH+LSRYLPVNGPW VDQ 
Sbjct: 62  PSAHLSQVLPGKPEVYISPVKMLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLVDQM 121

Query: 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190
           TSRAYVSQFS+DGSLFVAGFQ S IRIY+V+ GWK+QK+ILAKSLRWT+TDTSLSPDQR+
Sbjct: 122 TSRAYVSQFSSDGSLFVAGFQGSHIRIYNVDSGWKVQKNILAKSLRWTITDTSLSPDQRY 181

Query: 191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250
           LVYASMSPI+HIV+V S   ESLANVTEIH+GLDF A  DG  SFGIFS+KFSTDGRELV
Sbjct: 182 LVYASMSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGRELV 241

Query: 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310
           AGSSDD IYVYDLE NKLSLRILAH SDVNTVCF DE+GHL+YSGSDD  CKVWDRRC  
Sbjct: 242 AGSSDDSIYVYDLETNKLSLRILAHRSDVNTVCFADETGHLVYSGSDDTFCKVWDRRCFI 301

Query: 311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370
            KGK AG+L GH+EGITFIDSRGDGRYLISNGKDQ IKLWDIRKMS+NA+     R+Y+W
Sbjct: 302 SKGKAAGILEGHVEGITFIDSRGDGRYLISNGKDQTIKLWDIRKMSNNATHYNRPRNYDW 361

Query: 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430
           DYR MDYPP A++L HP D+S+ATYKGHSVLRTLIRC+FSP YSTGQKYIYTGSH+SCVY
Sbjct: 362 DYRXMDYPPHAKNLMHPRDRSLATYKGHSVLRTLIRCYFSPEYSTGQKYIYTGSHNSCVY 421

Query: 431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKR 490
           +YDL++G  VA LK+H SPVRDCSWHP  PMLVSSSWDGDVV+WEFPG+GEA  P NKKR
Sbjct: 422 IYDLLTGVLVATLKHHKSPVRDCSWHPQYPMLVSSSWDGDVVKWEFPGSGEAPTPPNKKR 481

Query: 491 IRRRQFY 497
           +RRR FY
Sbjct: 482 VRRRHFY 488

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567586|ref|XP_002524772.1| LEC14B protein, putative [Ricinus communis] gi|223535956|gb|EEF37615.1| LEC14B protein, putative [Ricinus communis]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/478 (70%), Positives = 374/478 (78%), Gaps = 41/478 (8%)

Query: 20  MGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEV 79
           MGYAMSR EI+SE  D   T N+  N + +  K L  LDHEI+  T LKS P +  ++ +
Sbjct: 1   MGYAMSRLEIDSENCDGGKTNNEIGNGQ-RSNKSLHNLDHEISLATNLKSRPHQRLAEVI 59

Query: 80  PGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF 139
           PGKR LPVSTVKMLAGREGNYSGRGRFSAAD CHML RYLPVNGPW +DQ TSRAYVSQF
Sbjct: 60  PGKRELPVSTVKMLAGREGNYSGRGRFSAADRCHMLGRYLPVNGPWLIDQMTSRAYVSQF 119

Query: 140 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199
           S+DGSLFVAGFQ S IRIY+V+RGWK+QK+ILAKSLRWTVTDTSLSPDQRHLVY SMSPI
Sbjct: 120 SSDGSLFVAGFQGSHIRIYNVDRGWKVQKNILAKSLRWTVTDTSLSPDQRHLVYTSMSPI 179

Query: 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 259
           VHIVDVGS  MESL N+T                                          
Sbjct: 180 VHIVDVGSAAMESLKNITS----------------------------------------K 199

Query: 260 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 319
           ++ +E++   L+++   SDVNTVCF DESGHLIYSGSDDNLCKVWDRRC   +GKPAGVL
Sbjct: 200 IHSVESSSFELQLIVILSDVNTVCFADESGHLIYSGSDDNLCKVWDRRCFIARGKPAGVL 259

Query: 320 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 379
           +GHLEGITF+DSRGDGRYLISNGKDQ IKLWDIRKM+SNA+CN G R+YEWDYRWMDYPP
Sbjct: 260 VGHLEGITFLDSRGDGRYLISNGKDQTIKLWDIRKMASNATCNAGLRNYEWDYRWMDYPP 319

Query: 380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439
           QA+DLKHP DQSVATY GHSVLRTLIRC+FSP YSTGQKYIYTGSHDSCVY+YDLV+G Q
Sbjct: 320 QAKDLKHPGDQSVATYSGHSVLRTLIRCYFSPTYSTGQKYIYTGSHDSCVYIYDLVTGAQ 379

Query: 440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFY 497
           V  LK+H SPVRDCSWHP  PML+SSSWDGDVV+WEFPGNGEA  P  KKRIRRRQFY
Sbjct: 380 VGVLKHHKSPVRDCSWHPDYPMLISSSWDGDVVKWEFPGNGEAPIPAAKKRIRRRQFY 437

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
TAIR|locus:2139335	493	AT4G03020 "AT4G03020" [Arabido	0.971	0.981	0.764	2.3e-206
UNIPROTKB|F1SGL8	546	DCAF11 "Uncharacterized protei	0.748	0.683	0.442	2.4e-85
UNIPROTKB|Q8TEB1	546	DCAF11 "DDB1- and CUL4-associa	0.748	0.683	0.440	1.3e-84
UNIPROTKB|Q5R7H5	546	DCAF11 "DDB1- and CUL4-associa	0.748	0.683	0.440	1.7e-84
UNIPROTKB|Q5E9I8	546	DCAF11 "DDB1- and CUL4-associa	0.757	0.690	0.435	5.6e-84
UNIPROTKB|F1MVT2	546	DCAF11 "DDB1- and CUL4-associa	0.757	0.690	0.435	7.2e-84
RGD|1311288	549	Dcaf11 "DDB1 and CUL4 associat	0.889	0.806	0.392	7.2e-84
MGI|MGI:90168	549	Dcaf11 "DDB1 and CUL4 associat	0.761	0.690	0.438	1.9e-83
ZFIN|ZDB-GENE-050809-116	541	dcaf11 "ddb1 and cul4 associat	0.763	0.702	0.434	3.9e-83
ASPGD|ASPL0000074293	660	AN4800 [Emericella nidulans (t	0.602	0.454	0.453	2e-73

TAIR|locus:2139335 AT4G03020 "AT4G03020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1996 (707.7 bits), Expect = 2.3e-206, P = 2.3e-206
 Identities = 373/488 (76%), Positives = 424/488 (86%)

Query:    13 SGVDFDEMGYAMSRFEIESEFYDAA-DTVNQASNSRS-KFKKPLSALDHEIAQLTKLKSE 70
             S  D DEMGYAMSR EIES+  D   D     S+S S +  + L+ LDHEI+Q+TKLKS 
Sbjct:     6 SEFDADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSS 65

Query:    71 PKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQT 130
             P + +S+EVPG+  LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP  GPW VDQ 
Sbjct:    66 PHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQM 125

Query:   131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190
              SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLSPDQR+
Sbjct:   126 DSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRN 185

Query:   191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250
             LVYASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGRE+V
Sbjct:   186 LVYASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVV 245

Query:   251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310
             AGSSDD IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKVWDRRC  
Sbjct:   246 AGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFI 305

Query:   311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG-FRSYE 369
              + KPAGVL+GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSS+A       R+YE
Sbjct:   306 GRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYE 365

Query:   370 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 429
             WDYRWMDYP +ARDLKHP DQSV+TYKGHSVLRTLIRC+FSP +STGQKYIYTGS+DS V
Sbjct:   366 WDYRWMDYPTEARDLKHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSV 425

Query:   430 YVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKK 489
             Y+YDLVSG++VA LK+H+SPVRDC+WHP  P L+SSSWDGD+V+WEFPG+GEA P ++KK
Sbjct:   426 YIYDLVSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGEA-PIMSKK 484

Query:   490 RIRRRQFY 497
             R+RRR FY
Sbjct:   485 RVRRRHFY 492

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|F1SGL8 DCAF11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 174/393 (44%), Positives = 238/393 (60%)

Query:    91 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 150
             +ML  RE     RG FS  +   ++S +LP N    +D  + +A+   +S DG +F++  
Sbjct:   133 QMLLQRERGLCHRGSFSLGEQSRVMSHFLP-NDLGFIDTYSQKAFCGIYSKDGQIFMSAC 191

Query:   151 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 208
             Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct:   192 QDQVIRMYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251

Query:   209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 268
                      + H  LD    +     F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct:   252 ---------DTHTALDLRPVER---RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query:   269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGIT 327
             +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH +GIT
Sbjct:   300 TLQIESHEDDVNAVAFADMSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGIT 359

Query:   328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RD 383
             FIDS+GD RYLISN KDQ IKLWDIR+ SS        ++    +WDYRW   P +A R 
Sbjct:   360 FIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQDWDYRWQQVPKKAWRK 419

Query:   384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443
             LK P D S+ TY+GH VL TLIRC FSP YSTGQ+YIY+G     V VYDL+SG  V  L
Sbjct:   420 LKLPGDSSLMTYRGHGVLHTLIRCRFSPTYSTGQQYIYSGCSTGKVVVYDLLSGHIVKKL 479

Query:   444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
               H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:   480 TSHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|Q8TEB1 DCAF11 "DDB1- and CUL4-associated factor 11" [Homo sapiens (taxid:9606)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 173/393 (44%), Positives = 239/393 (60%)

Query:    91 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 150
             +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct:   133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191

Query:   151 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 208
             Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct:   192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251

Query:   209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 268
                      + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct:   252 ---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query:   269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGIT 327
             +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH +GIT
Sbjct:   300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGIT 359

Query:   328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RD 383
             FIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R 
Sbjct:   360 FIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRK 419

Query:   384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443
             LK P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L
Sbjct:   420 LKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKL 479

Query:   444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
               H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:   480 TNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5R7H5 DCAF11 "DDB1- and CUL4-associated factor 11" [Pongo abelii (taxid:9601)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 173/393 (44%), Positives = 239/393 (60%)

Query:    91 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 150
             +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG +F++  
Sbjct:   133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191

Query:   151 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 208
             Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++ G G
Sbjct:   192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG 251

Query:   209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 268
                      + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D E N+ 
Sbjct:   252 ---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299

Query:   269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGIT 327
             +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH +GIT
Sbjct:   300 TLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGIT 359

Query:   328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RD 383
             FIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R 
Sbjct:   360 FIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRK 419

Query:   384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443
             LK P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L
Sbjct:   420 LKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKL 479

Query:   444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
               H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:   480 TNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q5E9I8 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 173/397 (43%), Positives = 240/397 (60%)

Query:    87 VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 146
             +S  +ML  RE     +G FS  +   ++S +LP N     D  + +A+   +S DG +F
Sbjct:   129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187

Query:   147 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205
             ++  Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++
Sbjct:   188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247

Query:   206 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264
              G G         + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D E
Sbjct:   248 YGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295

Query:   265 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHL 323
              N+ +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH 
Sbjct:   296 QNRRTLQIESHEDDVNAVAFADVSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQ 355

Query:   324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQ 380
             +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +
Sbjct:   356 DGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415

Query:   381 A-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439
             A R LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  
Sbjct:   416 AWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHV 475

Query:   440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
             V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:   476 VKKLTTHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|F1MVT2 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 173/397 (43%), Positives = 240/397 (60%)

Query:    87 VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 146
             +S  +ML  RE     +G FS  +   ++S +LP N     D  + +A+   +S DG +F
Sbjct:   129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187

Query:   147 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205
             ++  Q   IR+YD   G ++  K I A+ + W+V D + +PD  H +Y+S S  +HI ++
Sbjct:   188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247

Query:   206 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264
              G G         + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D E
Sbjct:   248 YGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295

Query:   265 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHL 323
              N+ +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L GH 
Sbjct:   296 QNRRTLQIESHEDDVNAVAFADVSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQ 355

Query:   324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQ 380
             +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +
Sbjct:   356 DGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415

Query:   381 A-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439
             A R LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  
Sbjct:   416 AWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHI 475

Query:   440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
             V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:   476 VKKLTTHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

RGD|1311288 Dcaf11 "DDB1 and CUL4 associated factor 11" [Rattus norvegicus (taxid:10116)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 183/466 (39%), Positives = 262/466 (56%)

Query:    21 GYAMSRFEIESEFYDAADTVNQASNSR--SKFKKPLSAL-DHEIAQLTKLKSEPKEHFSK 77
             G   +  ++     D+ +  + A + R   ++  P+ A  D    +  ++K+  +    +
Sbjct:    60 GGGAANLQLIQALSDSEEEHDSAWDGRLGDRYNPPVDATPDTRELEYNEIKTRVELATGR 119

Query:    78 EVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS 137
                G+     S  +ML  RE     RG FS  +   ++S +LP N     D  + +A+  
Sbjct:   120 LGLGRTAQEHSFPRMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCG 178

Query:   138 QFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 196
              +S DG +F++  Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S 
Sbjct:   179 IYSKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSW 238

Query:   197 SPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 255
             S  +HI  + G G         + H  LD    D+    F +FS+  S+DGRE++ G++D
Sbjct:   239 SDYIHICSIYGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGAND 286

Query:   256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-K 314
              C+YV+D E N+ +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     K
Sbjct:   287 GCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPK 346

Query:   315 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWD 371
             P G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS     +  L      WD
Sbjct:   347 PVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWD 406

Query:   372 YRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430
             YRW   P +A + LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V 
Sbjct:   407 YRWQQVPKKAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVV 466

Query:   431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
             VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG +  W++
Sbjct:   467 VYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGSLRLWQY 512

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO;ISS

MGI|MGI:90168 Dcaf11 "DDB1 and CUL4 associated factor 11" [Mus musculus (taxid:10090)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 175/399 (43%), Positives = 238/399 (59%)

Query:    85 LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 144
             L  S  +ML  RE     RG FS  +   ++S +LP N     D  + +A+   +S DG 
Sbjct:   127 LQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQ 185

Query:   145 LFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203
             +F++  Q   IR+YD   G +   K I A+ + W+V D + +PD  H +Y+S S  +HI 
Sbjct:   186 IFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHIC 245

Query:   204 DV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 262
             ++ G G         + H  LD    D+    F +FS+  S+DGRE++ G++D C+YV+D
Sbjct:   246 NIYGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFD 293

Query:   263 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMG 321
              E N+ +L+I +H  DVN V F D S  +++SG DD +CKVWDRR +     KP G L G
Sbjct:   294 REQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAG 353

Query:   322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYP 378
             H +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS     +  L      WDYRW   P
Sbjct:   354 HQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVP 413

Query:   379 PQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437
               A + LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG
Sbjct:   414 KIAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSG 473

Query:   438 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
               V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:   474 HIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

ZFIN|ZDB-GENE-050809-116 dcaf11 "ddb1 and cul4 associated factor 11" [Danio rerio (taxid:7955)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 173/398 (43%), Positives = 234/398 (58%)

Query:    88 STVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV 147
             S   MLA RE        FS  +C  + S +LP +  +  D    + +   +S +G++F+
Sbjct:   134 SFTHMLAEREQGRCRGSSFSHGECSRIRSHFLPNHVVYK-DTYQQKVFCGVYSDEGNMFL 192

Query:   148 AGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 206
             +  Q   IR+YD  RG + ++K + A+ + W++ D   +PD R ++Y+S S  +H+  V 
Sbjct:   193 SACQDQNIRLYDTSRGRFTLKKTVKARDVGWSILDVCFTPDARCVLYSSWSDYIHVCSVD 252

Query:   207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 266
                        E H  LD +  D+    F +FSL  STDG+E++ G++D C+YV+D E N
Sbjct:   253 GDN--------ETHTALDLNP-DER--RFCVFSLAASTDGKEILGGANDGCLYVFDREQN 301

Query:   267 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMGHLEG 325
             K +L+I AH  DVN V F D S  L++SGSDD LCKVWDRR L   + +P G L GH +G
Sbjct:   302 KRTLKIDAHEDDVNAVAFADSSSQLLFSGSDDALCKVWDRRTLREDRPQPVGHLAGHRDG 361

Query:   326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN---ASCNLGFRSYEWDYRWMDYPPQA- 381
             ITFI S+GD RYLISN KDQ IKLWD+RK S     A+  L      WDYRW   P +A 
Sbjct:   362 ITFIHSKGDARYLISNSKDQTIKLWDVRKFSPKEGLAASRLAVTQQNWDYRWQQVPQRAL 421

Query:   382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441
             +  K   D SV TY+GH VL TLIRC FSP +STGQK+IYTG     + +YD+++G  V 
Sbjct:   422 KRHKLTGDTSVMTYRGHGVLHTLIRCRFSPEFSTGQKFIYTGCSTGKIVIYDVLTGSVVC 481

Query:   442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479
              L  H + VRD SWHP    +VSSSWDG +  WE   N
Sbjct:   482 KLSNHDACVRDVSWHPYNNNMVSSSWDGAIRLWEHTQN 519

GO:0003824 "catalytic activity" evidence=IEA

ASPGD|ASPL0000074293 AN4800 [Emericella nidulans (taxid:162425)]

 Score = 679 (244.1 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 141/311 (45%), Positives = 194/311 (62%)

Query:   132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQR 189
             ++ Y  QFS DG+ F +  Q  ++R+YD      WK  K +      WT+TD +LSPD R
Sbjct:   230 AKCYSGQFSDDGNFFFSCAQDFKVRMYDTSNPYEWKYYKTVDYPLASWTITDATLSPDNR 289

Query:   190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFSTDGR 247
              L Y+S+  +V +         S   + ++        A D  G   F ++S++FS DGR
Sbjct:   290 FLAYSSLRQLVCLAPTDPAD-SSDPIILDLASSAQRRVARDIFGRDGFAVWSVRFSGDGR 348

Query:   248 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVWDR 306
             E+VAG+ D  + VYDLE  +  LRI  H  DVN VCFGD+S  H++YSGSDD+  +VWDR
Sbjct:   349 EIVAGTGDHSVIVYDLETRQSVLRIRNHEDDVNAVCFGDKSSPHILYSGSDDSTVRVWDR 408

Query:   307 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN-LGF 365
             R +   G+ AGV +GH EG+T++DS+GDGRY++SN KDQ +KLWD+RKM S A  + L  
Sbjct:   409 RSM-ADGREAGVFVGHTEGLTYVDSKGDGRYVLSNSKDQTMKLWDLRKMMSTAKFDTLEP 467

Query:   366 RSYE--WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 423
              SY   +DYR+  +P       HP D SV T++GHSVLRTLIRCHFSP  S+  +Y+Y+G
Sbjct:   468 TSYGTGFDYRFDPFPSDFY-YPHPHDCSVVTFRGHSVLRTLIRCHFSPPGSSDSRYVYSG 526

Query:   424 SHDSCVYVYDL 434
             S D  VYV++L
Sbjct:   527 SEDGKVYVWNL 537

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O24467	LE14B_PRUAR	No assigned EC number	0.6814	0.9457	0.9915	N/A	no
Q40153	LE14B_LITER	No assigned EC number	0.6962	0.9497	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	498
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	9e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	6e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  133 bits (338), Expect = 1e-35
 Identities = 89/339 (26%), Positives = 129/339 (38%), Gaps = 64/339 (18%)

Query: 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190
           T       FS DG L   G     I+++D+E G  ++           V D + S D  +
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG---PVRDVAASADGTY 65

Query: 191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250
           L   S    + + D+ +G       V  +            G++  + S+ FS DGR L 
Sbjct: 66  LASGSSDKTIRLWDLETGEC-----VRTLT-----------GHTSYVSSVAFSPDGRILS 109

Query: 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310
           + S D  I V+D+E  K    +  HT  VN+V F    G  + S S D   K+WD     
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF-SPDGTFVASSSQDGTIKLWD----L 164

Query: 311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370
             GK    L GH   +  +    DG  L+S+  D  IKLWD+                  
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST---------------- 208

Query: 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430
                              + + T +GH     +    FSP        + +GS D  + 
Sbjct: 209 ------------------GKCLGTLRGHE--NGVNSVAFSP----DGYLLASGSEDGTIR 244

Query: 431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469
           V+DL +GE V  L  HT+ V   +W P    L S S DG
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  123 bits (311), Expect = 7e-32
 Identities = 67/246 (27%), Positives = 105/246 (42%), Gaps = 47/246 (19%)

Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV-CFGDESGH 290
           G++ G+  + FS DG+ L  GS D  I V+DLE  +L   +  HT  V  V    D  G 
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD--GT 64

Query: 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
            + SGS D   ++WD       G+    L GH   ++ +    DGR L S+ +D+ IK+W
Sbjct: 65  YLASGSSDKTIRLWDLE----TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410
           D+                                     + + T +GH+    +    FS
Sbjct: 121 DVET----------------------------------GKCLTTLRGHT--DWVNSVAFS 144

Query: 411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           P       ++ + S D  + ++DL +G+ VA L  HT  V   ++ P    L+SSS DG 
Sbjct: 145 P----DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200

Query: 471 VVRWEF 476
           +  W+ 
Sbjct: 201 IKLWDL 206

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  119 bits (300), Expect = 2e-30
 Identities = 76/296 (25%), Positives = 121/296 (40%), Gaps = 61/296 (20%)

Query: 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 238
           VT  + SPD + L   S    + + D+ +G +                     G++  + 
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR----------------TLKGHTGPVR 55

Query: 239 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 298
            +  S DG  L +GSSD  I ++DLE  +    +  HTS V++V F    G ++ S S D
Sbjct: 56  DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF-SPDGRILSSSSRD 114

Query: 299 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358
              KVWD       GK    L GH + +  +    DG ++ S+ +D  IKLWD+R     
Sbjct: 115 KTIKVWDVE----TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC- 169

Query: 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 418
                                            VAT  GH+    +    FSP    G+K
Sbjct: 170 ---------------------------------VATLTGHT--GEVNSVAFSP---DGEK 191

Query: 419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474
            + + S D  + ++DL +G+ +  L+ H + V   ++ P   +L S S DG +  W
Sbjct: 192 LL-SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  104 bits (262), Expect = 3e-25
 Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 24/213 (11%)

Query: 139 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198
           FS DG +  +  +   I+++DVE G K    +   +  W V   + SPD   +  +S   
Sbjct: 101 FSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHT-DW-VNSVAFSPDGTFVASSSQDG 157

Query: 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 258
            + + D+ +G           H G              + S+ FS DG +L++ SSD  I
Sbjct: 158 TIKLWDLRTG---KCVATLTGHTG-------------EVNSVAFSPDGEKLLSSSSDGTI 201

Query: 259 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 318
            ++DL   K    +  H + VN+V F    G+L+ SGS+D   +VWD R     G+    
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAF-SPDGYLLASGSEDGTIRVWDLR----TGECVQT 256

Query: 319 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351
           L GH   +T +    DG+ L S   D  I++WD
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.9 bits (247), Expect = 4e-23
 Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 45/204 (22%)

Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V  V F    G L+ +GS D   KVWD       G+    L GH   + 
Sbjct: 1   LRRTLKGHTGGVTCVAF-SPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVR 55

Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            + +  DG YL S   D+ I+LWD+                                   
Sbjct: 56  DVAASADGTYLASGSSDKTIRLWDLET--------------------------------- 82

Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
             + V T  GH+    +    FSP      + + + S D  + V+D+ +G+ +  L+ HT
Sbjct: 83  -GECVRTLTGHT--SYVSSVAFSP----DGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135

Query: 448 SPVRDCSWHPSQPMLVSSSWDGDV 471
             V   ++ P    + SSS DG +
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTI 159

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.0 bits (245), Expect = 3e-22
 Identities = 82/354 (23%), Positives = 140/354 (39%), Gaps = 34/354 (9%)

Query: 136 VSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 193
           ++  S DG+  +    +    ++++D+    K+ + +   S   +VT  + SPD + L  
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS--ESVTSLAFSPDGKLLAS 172

Query: 194 AS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252
            S +   + + D+ +G   S                   G++  + SL FS DG  L+A 
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLA----------------GHTDPVSSLAFSPDGGLLIAS 216

Query: 253 SSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 311
            S D  I ++DL   KL    L+  SD     F    G L+ SGS D   ++WD   L  
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF-SPDGSLLASGSSDGTIRLWD---LRS 272

Query: 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 371
                  L GH   +  +    DG+ L S   D  ++LWD+   +     +L  + +E  
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE--TGKLLSSLTLKGHEGP 330

Query: 372 YRWMDYPPQARDLKHPC--DQSVATYKGHSVLRTLIRCHFSPVYST----GQKYIYTGSH 425
              + + P    L      D ++  +   +          S V S       + + +GS 
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390

Query: 426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479
           D  V ++DL +G  +  L  HTS V    + P    L S S D  +  W+   +
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 95.2 bits (235), Expect = 5e-21
 Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 20/277 (7%)

Query: 218 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AH 275
            +    D S+    G+   I S+ FS DG  L++GSSD  I ++DL+  +  ++ L   H
Sbjct: 49  SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108

Query: 276 TSDVNTVCFGDESGHLIYS--GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333
            S V+ +      G+ I     S D   K+WD   L+  GK    L GH E +T +    
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWD---LSTPGKLIRTLEGHSESVTSLAFSP 165

Query: 334 DGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK--HPCDQ 390
           DG+ L S    D  IKLWD+R     ++       +      + + P    L      D 
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHTDPVSSLAFSPDGGLLIASGSSDG 221

Query: 391 SVATYKGHS--VLRTLIRCHFSPV---YSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALK 444
           ++  +   +  +LR+ +  H   V   +S     + +GS D  + ++DL S    +  L 
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281

Query: 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481
            H+S V   ++ P   +L S S DG V  W+      
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.4 bits (233), Expect = 1e-20
 Identities = 94/363 (25%), Positives = 141/363 (38%), Gaps = 35/363 (9%)

Query: 127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 186
           +           FS DG L ++G     I+++D++ G K+ K +              SP
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 246
           D   ++ AS S    +      T   L    E H                + SL FS DG
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE-------------SVTSLAFSPDG 167

Query: 247 RELVAGSSDDC-IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305
           + L +GSS D  I ++DL   K    +  HT  V+++ F  + G LI SGS D   ++WD
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS----NASC 361
                +       L GH + +    S  DG  L S   D  I+LWD+R  SS     +  
Sbjct: 228 LSTGKLL---RSTLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 362 NLGFRSYEWDYRW-------MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414
           +    S  +            D   +  DL+     S  T KGH     +    FSP   
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE--GPVSSLSFSP--- 338

Query: 415 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474
            G   +  GS D  + ++DL +G+ +       S V   S+ P   ++ S S DG V  W
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPL-KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLW 397

Query: 475 EFP 477
           +  
Sbjct: 398 DLS 400

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.8 bits (192), Expect = 7e-16
 Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 42/162 (25%)

Query: 317 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 376
             L GH  G+T +    DG+ L +   D  IK+WD+                        
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET---------------------- 40

Query: 377 YPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435
                        + + T KGH+  +R +              Y+ +GS D  + ++DL 
Sbjct: 41  ------------GELLRTLKGHTGPVRDVAASADG-------TYLASGSSDKTIRLWDLE 81

Query: 436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
           +GE V  L  HTS V   ++ P   +L SSS D  +  W+  
Sbjct: 82  TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 391 SVATYKGHSVLRTLIRC-HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 449
              T KGH      + C  FSP      K + TGS D  + V+DL +GE +  LK HT P
Sbjct: 1   LRRTLKGH---TGGVTCVAFSPD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTGP 53

Query: 450 VRDCSWHPSQPMLVSSSWDGDVVRW 474
           VRD +       L S S D  +  W
Sbjct: 54  VRDVAASADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 51/219 (23%), Positives = 78/219 (35%), Gaps = 18/219 (8%)

Query: 266 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 325
            K S    +  S         ESG L+ +   D+L  + D   L ++G        H + 
Sbjct: 16  LKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG--------HEDS 67

Query: 326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP--PQARD 383
           IT I    DG  L+S   D  IKLWD+           G          +  P       
Sbjct: 68  ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILL 127

Query: 384 LKHPCDQSVATYK--GHSVLRTLIRCHFSPVYS-----TGQKYIYTGSHDSCVYVYDLVS 436
                D +V  +       L   +  H   V S      G+      S D  + ++DL +
Sbjct: 128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187

Query: 437 GEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRW 474
           G+ ++ L  HT PV   ++ P    ++ S S DG +  W
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
           SGE +  LK HT PV   ++ P    L S S DG +  W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474
           G+ +  LK HT PV   ++ P   +L S S DG V  W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305
            HT  V +V F    G+L+ SGSDD   +VWD
Sbjct: 9   GHTGPVTSVAF-SPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 17/139 (12%)

Query: 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK-------FSTD-GRELVAGSS 254
           +D  S     LA+ ++  DG     + + G S G    K       F ++ GR L  GS+
Sbjct: 581 IDYSSADPTLLASGSD--DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSA 638

Query: 255 DDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 313
           D  +Y YDL   KL L  ++ H+  V+ V F D S   + S S DN  K+WD   +++ G
Sbjct: 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSS--TLVSSSTDNTLKLWDLS-MSISG 695

Query: 314 ---KPAGVLMGHLEGITFI 329
               P    MGH     F+
Sbjct: 696 INETPLHSFMGHTNVKNFV 714

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305
            HT  V +V F    G  + SGSDD   K+WD
Sbjct: 10  GHTGPVTSVAF-SPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 39/234 (16%)

Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           ++S+ +S+    L+A  SDD           +S+  +   +++  V F  ESG  +  GS
Sbjct: 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637

Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356
            D+    +D R   +   P   ++GH + ++++    D   L+S+  D  +KLWD+    
Sbjct: 638 ADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693

Query: 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 416
           S  +                            +  + ++ GH+ ++  +        S  
Sbjct: 694 SGIN----------------------------ETPLHSFMGHTNVKNFVG------LSVS 719

Query: 417 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPMLVSSSWDG 469
             YI TGS  + V+VY       V + K+ T  PV       +   + S  W G
Sbjct: 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351
            G+    L GH   +T +    DG+YL S   D  IKLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351
           GK    L GH   +T +    DG  L S   D  +++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	498
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG4283	397	consensus Transcription-coupled repair protein CSA	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
PTZ00421	493	coronin; Provisional	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
PTZ00420	568	coronin; Provisional	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG1188	376	consensus WD40 repeat protein [General function pr	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG4227	609	consensus WD40 repeat protein [General function pr	99.91
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG1310	758	consensus WD40 repeat protein [General function pr	99.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG1334	559	consensus WD40 repeat protein [General function pr	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG2321	703	consensus WD40 repeat protein [General function pr	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG1963	792	consensus WD40 repeat protein [General function pr	99.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
KOG2315	566	consensus Predicted translation initiation factor	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.64
KOG1334	559	consensus WD40 repeat protein [General function pr	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.62
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
KOG2314	698	consensus Translation initiation factor 3, subunit	99.51
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
KOG4547	541	consensus WD40 repeat-containing protein [General	99.48
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.48
PRK01029	428	tolB translocation protein TolB; Provisional	99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
PRK00178	430	tolB translocation protein TolB; Provisional	99.43
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.42
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.42
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.4
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.4
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.4
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.36
COG4946	668	Uncharacterized protein related to the periplasmic	99.34
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.34
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
KOG2315	566	consensus Predicted translation initiation factor	99.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.24
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.22
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.21
COG4946	668	Uncharacterized protein related to the periplasmic	99.2
PRK04043	419	tolB translocation protein TolB; Provisional	99.19
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.15
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.15
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.12
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.11
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.1
PRK04043	419	tolB translocation protein TolB; Provisional	99.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.09
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.07
KOG2695	425	consensus WD40 repeat protein [General function pr	99.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.04
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.03
KOG2314	698	consensus Translation initiation factor 3, subunit	99.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.0
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.96
KOG2695	425	consensus WD40 repeat protein [General function pr	98.95
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.93
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.92
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.91
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.9
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.86
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.86
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.84
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.84
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.79
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
KOG3621	726	consensus WD40 repeat-containing protein [General	98.78
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.71
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.7
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.62
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.62
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.56
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.52
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.51
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.48
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.48
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.46
PRK02888	635	nitrous-oxide reductase; Validated	98.44
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.42
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.42
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.41
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.36
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.33
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.29
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.25
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.19
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.18
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.15
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.14
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.06
KOG3621	726	consensus WD40 repeat-containing protein [General	98.03
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.02
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.99
COG3391	381	Uncharacterized conserved protein [Function unknow	97.94
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.91
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.89
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.89
PRK13616	591	lipoprotein LpqB; Provisional	97.82
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.77
PRK02888	635	nitrous-oxide reductase; Validated	97.76
COG3391	381	Uncharacterized conserved protein [Function unknow	97.71
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.7
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.64
KOG2444	238	consensus WD40 repeat protein [General function pr	97.63
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.62
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.61
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.61
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.6
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.6
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.57
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.5
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.44
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.43
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.43
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.41
KOG2395	644	consensus Protein involved in vacuole import and d	97.39
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.38
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.36
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.33
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.33
PHA02713	557	hypothetical protein; Provisional	97.33
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.31
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.28
KOG2395	644	consensus Protein involved in vacuole import and d	97.26
PHA02713	557	hypothetical protein; Provisional	97.24
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.21
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.17
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.14
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.08
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.05
KOG2444	238	consensus WD40 repeat protein [General function pr	97.04
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.03
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.0
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.84
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.84
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.8
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.77
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.69
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.67
PRK13616	591	lipoprotein LpqB; Provisional	96.61
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.55
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.52
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.43
PHA03098	534	kelch-like protein; Provisional	96.41
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.39
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.38
PRK10115	686	protease 2; Provisional	96.36
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.15
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.07
PRK10115	686	protease 2; Provisional	95.99
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.88
PHA03098	534	kelch-like protein; Provisional	95.86
PRK13684	334	Ycf48-like protein; Provisional	95.68
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.67
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.63
PHA02790	480	Kelch-like protein; Provisional	95.49
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.41
COG5276	370	Uncharacterized conserved protein [Function unknow	95.37
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.07
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.0
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.89
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.86
PHA02790	480	Kelch-like protein; Provisional	94.85
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.77
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.73
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.55
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.53
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.38
COG5167	776	VID27 Protein involved in vacuole import and degra	94.38
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.33
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	94.28
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.1
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.08
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.96
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.86
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.39
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.34
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.49
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	92.43
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.42
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.38
COG5167	776	VID27 Protein involved in vacuole import and degra	92.21
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.02
PLN02193	470	nitrile-specifier protein	91.9
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	91.86
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.81
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.8
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.78
KOG2247	615	consensus WD40 repeat-containing protein [General	91.73
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.65
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.55
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.32
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.77
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.75
PLN02193	470	nitrile-specifier protein	90.52
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.52
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.51
PLN02153	341	epithiospecifier protein	90.5
PRK13684	334	Ycf48-like protein; Provisional	90.5
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.42
KOG2247	615	consensus WD40 repeat-containing protein [General	89.98
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	89.78
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.48
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.35
PLN02153	341	epithiospecifier protein	89.19
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.16
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.15
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.14
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.94
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.91
COG1770	682	PtrB Protease II [Amino acid transport and metabol	88.58
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.7
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.29
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.15
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.13
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.91
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.47
PRK13615	557	lipoprotein LpqB; Provisional	86.14
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.93
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.66
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.47
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.15
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.01
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.99
COG4590	733	ABC-type uncharacterized transport system, permeas	84.62
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.33
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.8
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.72
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.46
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.14
PLN00033	398	photosystem II stability/assembly factor; Provisio	82.69
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.54
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	82.17
KOG3616	1636	consensus Selective LIM binding factor [Transcript	82.01
COG5276	370	Uncharacterized conserved protein [Function unknow	81.81

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-52  Score=358.74  Aligned_cols=298  Identities=25%  Similarity=0.376  Sum_probs=263.5

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      .+...+.+|.++|.|++|+|+|+.||+|+.|.++|+||+.+..+.   ....+|...|.|++|+|||+.||+|+.||.|+
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            455678999999999999999999999999999999999987443   35678999999999999999999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                      +||.++++....               ...+|...|++++|.|     ..++||+++.||.|+|||+..+.++..+.+|+
T Consensus       183 lwdpktg~~~g~---------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT  247 (480)
T KOG0271|consen  183 LWDPKTGQQIGR---------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT  247 (480)
T ss_pred             EecCCCCCcccc---------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence            999998876332               2247888999999987     56799999999999999999999999999999


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc-----------CCCC---------
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-----------GDGR---------  336 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-----------~~~~---------  336 (498)
                      .+|+|+.|.  ...+|++|+.|++|++|+..    .+.....+.+|...|+.++.+           |.++         
T Consensus       248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~----dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~  321 (480)
T KOG0271|consen  248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRAL----DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ  321 (480)
T ss_pred             cceEEEEEc--CCceEEecCCCceEEEEEcc----chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence            999999994  56799999999999999997    788999999999999999876           2233         


Q ss_pred             ----------------EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883          337 ----------------YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV  400 (498)
Q Consensus       337 ----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (498)
                                      .+++|+.|.++.+|+.....                                 +++....+|..
T Consensus       322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------------------------------kpi~rmtgHq~  368 (480)
T KOG0271|consen  322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------------------------------KPITRMTGHQA  368 (480)
T ss_pred             HHHHHHHHHhhccCcceeEEecCCceEEEecccccc---------------------------------cchhhhhchhh
Confidence                            49999999999999976532                                 56666777774


Q ss_pred             eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          401 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       401 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ...      +..||||++++|+++.|..|++||..+|+.+..|++|-++|..++|+.|.++|++|+.|.++++|++.+.+
T Consensus       369 lVn------~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  369 LVN------HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             hee------eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence            433      33788899999999999999999999999999999999999999999999999999999999999998775


Q ss_pred             CC
Q 010883          481 EA  482 (498)
Q Consensus       481 ~~  482 (498)
                      ..
T Consensus       443 l~  444 (480)
T KOG0271|consen  443 LK  444 (480)
T ss_pred             ec
Confidence            44

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.9e-49  Score=326.13  Aligned_cols=296  Identities=22%  Similarity=0.363  Sum_probs=262.9

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...|++|.+.|+++.|++|+++|++++.||.+.|||.-+..+.+.+.....   .|..++|+|.|+++|+|+.|+...||
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~---WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS---WVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce---eEEEEEECCCCCeEEecCcCceeEEE
Confidence            367899999999999999999999999999999999988877666544433   79999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      ++.+...........          ...+|++-+.|+.|.+|+ +|++++.|.+..+||+++++.+..+.+|.+.|.++.
T Consensus       125 ~ls~~d~~g~~~v~r----------~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls  193 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSR----------ELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS  193 (343)
T ss_pred             ecccccccccceeee----------eecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence            998653322222221          224799999999999866 599999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      ++|.+++.+++|+-|+..++||+|    .+..++.|.+|...|+++.|.|+|.-|++|+.|+++++||+|.         
T Consensus       194 l~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa---------  260 (343)
T KOG0286|consen  194 LSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA---------  260 (343)
T ss_pred             cCCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC---------
Confidence            986699999999999999999999    8899999999999999999999999999999999999999998         


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                               ++.+..|........+..+    +||..|++|++|..|.++.+||.-.++.+..+
T Consensus       261 -------------------------D~~~a~ys~~~~~~gitSv----~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L  311 (343)
T KOG0286|consen  261 -------------------------DQELAVYSHDSIICGITSV----AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL  311 (343)
T ss_pred             -------------------------CcEEeeeccCcccCCceeE----EEcccccEEEeeecCCceeEeeccccceEEEe
Confidence                                     5777777755544444444    56668999999999999999999999999999


Q ss_pred             ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       444 ~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      .+|...|.++..+|||..++||++|.+++||.
T Consensus       312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999999994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-49  Score=340.50  Aligned_cols=304  Identities=24%  Similarity=0.375  Sum_probs=269.1

Q ss_pred             ccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC---
Q 010883          110 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---  186 (498)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp---  186 (498)
                      +.+..+++.-...+...+.+|...|.|++|+|||+.||+|+.||+|++||..+|+++..  ...+|...|++++|.|   
T Consensus       136 D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl  213 (480)
T KOG0271|consen  136 DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHL  213 (480)
T ss_pred             CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeeccccc
Confidence            34445556656667788899999999999999999999999999999999999977665  4578888999999976   


Q ss_pred             --CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 010883          187 --DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  264 (498)
Q Consensus       187 --~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~  264 (498)
                        ..++||+++.||.|+|||+..+.+.....                ||+.+|+|++|--+| +|++|+.|++|++|+..
T Consensus       214 ~p~~r~las~skDg~vrIWd~~~~~~~~~ls----------------gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~  276 (480)
T KOG0271|consen  214 VPPCRRLASSSKDGSVRIWDTKLGTCVRTLS----------------GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL  276 (480)
T ss_pred             CCCccceecccCCCCEEEEEccCceEEEEec----------------cCccceEEEEEcCCc-eEEecCCCceEEEEEcc
Confidence              56899999999999999999887765544                799999999998666 79999999999999999


Q ss_pred             CCeeeEEEeccCCCeeEEEEeC----------C-------------------------CCCEEEEeeCCCeEEEEcCccc
Q 010883          265 ANKLSLRILAHTSDVNTVCFGD----------E-------------------------SGHLIYSGSDDNLCKVWDRRCL  309 (498)
Q Consensus       265 ~~~~~~~~~~~~~~v~~~~~~~----------~-------------------------~~~~l~s~s~dg~i~vwd~~~~  309 (498)
                      .|++...+.+|...|+.++.+.          +                         .++.|++|++|.++.+|+..  
T Consensus       277 dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~--  354 (480)
T KOG0271|consen  277 DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF--  354 (480)
T ss_pred             chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc--
Confidence            9999999999999999998861          1                         23469999999999999976  


Q ss_pred             cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD  389 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (498)
                       ...+++..+.+|..-|+.+.|+||+++||+++.|..|++||-++                                  +
T Consensus       355 -~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t----------------------------------G  399 (480)
T KOG0271|consen  355 -KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT----------------------------------G  399 (480)
T ss_pred             -ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC----------------------------------c
Confidence             34568889999999999999999999999999999999999998                                  5


Q ss_pred             ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                      +.+.+|++|-..      .+..+||.|.++|++|+.|.++++||+++.++...+.+|.+.|.++.|+|||..+++|+.|.
T Consensus       400 k~lasfRGHv~~------VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  400 KFLASFRGHVAA------VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             chhhhhhhccce------eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce
Confidence            777888888743      34447788999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEec
Q 010883          470 DVVRWE  475 (498)
Q Consensus       470 ~i~iw~  475 (498)
                      .+++|.
T Consensus       474 v~~lw~  479 (480)
T KOG0271|consen  474 VLRLWR  479 (480)
T ss_pred             EEEeec
Confidence            999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-48  Score=337.65  Aligned_cols=284  Identities=23%  Similarity=0.308  Sum_probs=257.1

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeEEEEEC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i~iwd~  205 (498)
                      -+-+.+|..+.||+|++.||||+.+|.++||+..+...+   ....+|...|.++.|+|.  +..||+++.||++++|++
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            456889999999999999999999999999999987433   456789999999999996  679999999999999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG  285 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  285 (498)
                      .+......+.                +|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.
T Consensus       249 ~~e~~l~~l~----------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~  312 (459)
T KOG0272|consen  249 SQETPLQDLE----------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ  312 (459)
T ss_pred             CCCcchhhhh----------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence            8865433332                678899999999999999999999999999999999988889999999999997


Q ss_pred             CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883          286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF  365 (498)
Q Consensus       286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  365 (498)
                       ++|.++++|+.|..-+|||++    ++.++..+.+|..+|.+++|+|+|..||||+.|++++|||++..          
T Consensus       313 -~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r----------  377 (459)
T KOG0272|consen  313 -PDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR----------  377 (459)
T ss_pred             -CCCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc----------
Confidence             899999999999999999999    99999999999999999999999999999999999999999983          


Q ss_pred             ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC-CCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883          366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  444 (498)
                                              ..+.++.+|.....-+      .|+| .|.+|++++.|++++||...+..+++.+.
T Consensus       378 ------------------------~~ly~ipAH~nlVS~V------k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa  427 (459)
T KOG0272|consen  378 ------------------------SELYTIPAHSNLVSQV------KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA  427 (459)
T ss_pred             ------------------------ccceecccccchhhhe------EecccCCeEEEEcccCcceeeecCCCcccchhhc
Confidence                                    4566677777544332      4444 78999999999999999999999999999


Q ss_pred             cCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      +|.+.|.++++++|+.+++|++.|.++++|.
T Consensus       428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-42  Score=302.23  Aligned_cols=305  Identities=27%  Similarity=0.410  Sum_probs=261.0

Q ss_pred             ccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE
Q 010883          116 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS  195 (498)
Q Consensus       116 ~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s  195 (498)
                      ...+|.+..+.+..|.++|+-+.||++|+|||+++.|.+..+|.+.....+.......+|..+|..+.||||.++|++++
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg  288 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG  288 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence            35668888899999999999999999999999999999999999877655555556678888999999999999999999


Q ss_pred             CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-
Q 010883          196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-  274 (498)
Q Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-  274 (498)
                      .+..+.+||+.+|........               ++...+.+++|.|||..+++|+.|+.+..||+.... .....+ 
T Consensus       289 ~~e~~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv  352 (519)
T KOG0293|consen  289 FDEVLSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGV  352 (519)
T ss_pred             chHheeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccccc
Confidence            999999999999987655442               234589999999999999999999999999997644 233332 


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      ....|.+++.+ ++|.++++.+.|..|++++..    ...... +.....+|+++..+.|++++++.-.+..+.+||+..
T Consensus       353 r~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  353 RDPKVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             ccceeEEEEEc-CCCcEEEEEecccceeeechh----hhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence            23568999997 889999999999999999986    222222 334567899999999999999999999999999986


Q ss_pred             CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883          355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL  434 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~  434 (498)
                                                        ...+..|.||.....+++.+|.--   +..++++|++|+.|+||+.
T Consensus       427 ----------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWhr  469 (519)
T KOG0293|consen  427 ----------------------------------NKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWHR  469 (519)
T ss_pred             ----------------------------------hhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEEc
Confidence                                              356777888888788887777654   6689999999999999999


Q ss_pred             CCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCC
Q 010883          435 VSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       435 ~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .+|+++..+.||...|++++|+|..+ ++|++|+||+|+||.....
T Consensus       470 ~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  470 ISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999999999999999999877 8999999999999987654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-40  Score=274.41  Aligned_cols=291  Identities=20%  Similarity=0.272  Sum_probs=238.1

Q ss_pred             ccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEE--EEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          125 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      ..+.+|++.|+.++..+.+ ..+++++.|.++.+|++.......  ......+|...|..+..++||++.++++.|++++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr   88 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR   88 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence            4678999999999999984 688999999999999987642111  1223456777999999999999999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-cCCCee
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVN  280 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~v~  280 (498)
                      +||+.+++....+.                ||...|.+++|++|.+.+++|+.|.+|.+|++........... +.+.|+
T Consensus        89 lWDl~~g~~t~~f~----------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs  152 (315)
T KOG0279|consen   89 LWDLATGESTRRFV----------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS  152 (315)
T ss_pred             EEEecCCcEEEEEE----------------ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence            99999987655544                6888999999999999999999999999999976554433332 378999


Q ss_pred             EEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          281 TVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       281 ~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      |+.|+|.. +-+|++++.|++|++||++    ..+....+.+|.+.++.++++|||...++|+.||.+.+||++..    
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~----  224 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG----  224 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC----
Confidence            99999553 6799999999999999998    77888899999999999999999999999999999999999973    


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                                                    +.+..+....   .    ..+.+|+|+...|+.+. +..|+|||+.++.+
T Consensus       225 ------------------------------k~lysl~a~~---~----v~sl~fspnrywL~~at-~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  225 ------------------------------KNLYSLEAFD---I----VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAV  266 (315)
T ss_pred             ------------------------------ceeEeccCCC---e----EeeEEecCCceeEeecc-CCceEEEeccchhh
Confidence                                          3344443333   2    23446677766666665 44599999999988


Q ss_pred             EEEecc----C-----CCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          440 VAALKY----H-----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       440 ~~~~~~----h-----~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      +..++.    .     .-...+++|++||..|++|-.|+.|++|.+.
T Consensus       267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            877652    1     2235678999999999999999999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1e-40  Score=278.59  Aligned_cols=294  Identities=26%  Similarity=0.390  Sum_probs=253.0

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+.+|++.|+++.|+|+|.+||+|+.|..|.+|++....  .......+|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            45678999999999999999999999999999999976542  2233456999999999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      |+++|+.....+                +|..-|+++.-+.-|. ++.+|+.|+++++||+++...+..+ ..+..++++
T Consensus       118 D~~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv  180 (338)
T KOG0265|consen  118 DAETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAV  180 (338)
T ss_pred             ecccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEE
Confidence            999999866555                5666788888555554 5667888999999999988877665 456789999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      .|. ..+..+.+|+-|+.|++||++    .......+.+|.++|+.+..+|+|.++.+.++|.++++||++....     
T Consensus       181 ~f~-d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----  250 (338)
T KOG0265|consen  181 GFK-DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----  250 (338)
T ss_pred             Eec-ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC-----
Confidence            998 777888999999999999999    8889999999999999999999999999999999999999987432     


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCc--eeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS--VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV  440 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~  440 (498)
                                               ..+++..+.++.  .......|    +|||+++.+.+|+.|..+++||..+...+
T Consensus       251 -------------------------~~R~v~if~g~~hnfeknlL~c----swsp~~~~i~ags~dr~vyvwd~~~r~~l  301 (338)
T KOG0265|consen  251 -------------------------SQRCVKIFQGHIHNFEKNLLKC----SWSPNGTKITAGSADRFVYVWDTTSRRIL  301 (338)
T ss_pred             -------------------------CCceEEEeecchhhhhhhccee----eccCCCCccccccccceEEEeecccccEE
Confidence                                     235577777664  33344555    45669999999999999999999999999


Q ss_pred             EEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          441 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       441 ~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      ..+.+|.+.|++++|+|..++|.+++.|.+|++=+
T Consensus       302 yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  302 YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             EEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99999999999999999999999999999998744

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.6e-41  Score=294.76  Aligned_cols=306  Identities=21%  Similarity=0.309  Sum_probs=252.6

Q ss_pred             cCCCCCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEE-EE------Ee----ecCCCceeEEEEEeCC
Q 010883          119 LPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKI-QK------DI----LAKSLRWTVTDTSLSP  186 (498)
Q Consensus       119 ~~~~~~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~-~~------~~----~~~~~~~~v~~~~~sp  186 (498)
                      +|......+. |.++|.+++|+|-.. +|++|+.|.+.++|++...... ..      ..    ........|++++|+.
T Consensus       167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~  245 (524)
T KOG0273|consen  167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN  245 (524)
T ss_pred             ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence            4444445555 999999999999876 9999999999999998751000 00      00    0111234799999999


Q ss_pred             CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883          187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      +|..||+|+.||.++||+...+....+.                 .|.++|.++.|+.+|.+|++++.|+++.+||..++
T Consensus       246 ~G~~LatG~~~G~~riw~~~G~l~~tl~-----------------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  246 DGTLLATGSEDGEARIWNKDGNLISTLG-----------------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             CCCeEEEeecCcEEEEEecCchhhhhhh-----------------ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence            9999999999999999998765442222                 47889999999999999999999999999999999


Q ss_pred             eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883          267 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA  346 (498)
Q Consensus       267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~  346 (498)
                      .....+.-|..+-..+.|-  +..-|++++.||.|+|+.+.    ...|+.++.+|.+.|.++.|+|.+.+|++++.|++
T Consensus       309 ~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T  382 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT  382 (524)
T ss_pred             eEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence            9999999999888889995  56689999999999999997    78899999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc-----cCCCCcEEE
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV-----YSTGQKYIY  421 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~l~  421 (498)
                      ++||....                                  ...+..+..|..  .+....|+|.     -...+..++
T Consensus       383 lkiWs~~~----------------------------------~~~~~~l~~Hsk--ei~t~~wsp~g~v~~n~~~~~~l~  426 (524)
T KOG0273|consen  383 LKIWSMGQ----------------------------------SNSVHDLQAHSK--EIYTIKWSPTGPVTSNPNMNLMLA  426 (524)
T ss_pred             eEeeecCC----------------------------------Ccchhhhhhhcc--ceeeEeecCCCCccCCCcCCceEE
Confidence            99999876                                  244555566652  2222333332     112467899


Q ss_pred             EEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      +++.|++|++||+..+.+++.|..|..+|.+++|+|+|+++|+|+.||.|.+|+...++....
T Consensus       427 sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s  489 (524)
T KOG0273|consen  427 SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS  489 (524)
T ss_pred             EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence            999999999999999999999999999999999999999999999999999999988765443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.5e-40  Score=267.58  Aligned_cols=282  Identities=22%  Similarity=0.333  Sum_probs=232.5

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL  223 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (498)
                      -+||+++.|-+||+|...+|.+...+..   ....|+.+...|+++.||+++. ..|++||+.++.......+.      
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh---~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e------   80 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQH---PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFE------   80 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEec---CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEe------
Confidence            4799999999999999999977776543   3447999999999999998875 67999999988764333322      


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEE
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV  303 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~v  303 (498)
                              +|+..|+++.|..+|+.+++|+.||+++|||++...+.+. ..|.++|+++..+ |+..-|++|..+|.|++
T Consensus        81 --------~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlh-pnQteLis~dqsg~irv  150 (311)
T KOG0315|consen   81 --------GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLH-PNQTELISGDQSGNIRV  150 (311)
T ss_pred             --------ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh-ccCCCCcceEEec-CCcceEEeecCCCcEEE
Confidence                    5777899999999999999999999999999999666444 4788999999998 66777889999999999


Q ss_pred             EcCccccCCCceeEEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883          304 WDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR  382 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      ||+.    .......+. .....|.++...|||.+++.+...|.+++|++-.......+                     
T Consensus       151 WDl~----~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l---------------------  205 (311)
T KOG0315|consen  151 WDLG----ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL---------------------  205 (311)
T ss_pred             EEcc----CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc---------------------
Confidence            9997    433333332 34468999999999999999999999999999773322221                     


Q ss_pred             cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEeccCCCCeeeeEEcCCCCe
Q 010883          383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPM  461 (498)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~  461 (498)
                             .++..++.|.  ..+.+|.    +|||+++||+++.|.+++||++.+. +....+++|...+++++||.||.+
T Consensus       206 -------~P~~k~~ah~--~~il~C~----lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Y  272 (311)
T KOG0315|consen  206 -------EPVHKFQAHN--GHILRCL----LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEY  272 (311)
T ss_pred             -------eEhhheeccc--ceEEEEE----ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccE
Confidence                   4555666666  3445554    5669999999999999999999887 666778899999999999999999


Q ss_pred             EEEEeCCCcEEEecCCCCCCCC
Q 010883          462 LVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       462 l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      |+|++.|+.+++|++..+++..
T Consensus       273 lvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  273 LVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             EEecCCCCceeecccccCceee
Confidence            9999999999999999887543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2e-39  Score=267.06  Aligned_cols=292  Identities=22%  Similarity=0.339  Sum_probs=238.5

Q ss_pred             CccccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          124 PWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      .+.+.+|+++|..++|+|- |..||+|+.|+.|++|+...+ .-..+.....+|+..|..++|+|.|++|+++|.|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            4567899999999999998 999999999999999999843 23344445568899999999999999999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEEeccCCC
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSD  278 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~  278 (498)
                      ||.-..++......+              .||...|.|++|+++|.+||+++.|.+|.||.+..+   ++...+..|...
T Consensus        87 Iw~k~~~efecv~~l--------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   87 IWKKEDGEFECVATL--------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD  152 (312)
T ss_pred             EeecCCCceeEEeee--------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence            999877665443332              378889999999999999999999999999998754   456778899999


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      |..+.|+ |...+|++++.|.+|++|+-.. .....++.++.+|...|.+++|++.|..|++++.|++++||.+...-..
T Consensus       153 VK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~  230 (312)
T KOG0645|consen  153 VKHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG  230 (312)
T ss_pred             ccEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch
Confidence            9999998 7778999999999999998764 3367789999999999999999999999999999999999986531100


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-  437 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-  437 (498)
                                                            .|.  ..+    +...+.  ...|++++.|+.|++|.-... 
T Consensus       231 --------------------------------------~~s--r~~----Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~  264 (312)
T KOG0645|consen  231 --------------------------------------MHS--RAL----YDVPWD--NGVIASGGGDDAIRLFKESDSP  264 (312)
T ss_pred             --------------------------------------hcc--cce----Eeeeec--ccceEeccCCCEEEEEEecCCC
Confidence                                                  011  111    112222  457999999999999986542 


Q ss_pred             -----cEEE-EeccCCCCeeeeEEcCC-CCeEEEEeCCCcEEEecCC
Q 010883          438 -----EQVA-ALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       438 -----~~~~-~~~~h~~~v~~l~~sp~-~~~l~s~~~Dg~i~iw~~~  477 (498)
                           +.+. .-..|...|++++|+|. ...|+++++||.|++|.+.
T Consensus       265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                 1111 22478899999999995 5699999999999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.7e-41  Score=293.10  Aligned_cols=290  Identities=22%  Similarity=0.381  Sum_probs=251.2

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      ..+.+|..+.|.|+|+.|++|+..|.+.+|+..+   +........|..+|.++.|++++.++++|+.+|.|++|+..-.
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence            3467899999999999999999999999999843   2233345788999999999999999999999999999998654


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  288 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  288 (498)
                      .......                .|...|.+++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+ |.
T Consensus       171 nVk~~~a----------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~  233 (464)
T KOG0284|consen  171 NVKIIQA----------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PT  233 (464)
T ss_pred             hhHHhhH----------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Cc
Confidence            4322211                244689999999999999999999999999999999888999999999999998 67


Q ss_pred             CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883          289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY  368 (498)
Q Consensus       289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  368 (498)
                      ..+|++|+.|..|++||.+    ++.++.++.+|...|..+.|+|++++|++++.|..++++|++++             
T Consensus       234 kgLiasgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-------------  296 (464)
T KOG0284|consen  234 KGLIASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-------------  296 (464)
T ss_pred             cceeEEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-------------
Confidence            7799999999999999999    99999999999999999999999999999999999999999974             


Q ss_pred             cccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-cCC
Q 010883          369 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHT  447 (498)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~  447 (498)
                                           ..+.++++|.  ..+....|+|.   ...+|.+|+.||.|..|.+...+++..+. +|.
T Consensus       297 ---------------------kEl~~~r~Hk--kdv~~~~WhP~---~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd  350 (464)
T KOG0284|consen  297 ---------------------KELFTYRGHK--KDVTSLTWHPL---NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHD  350 (464)
T ss_pred             ---------------------HHHHHhhcch--hhheeeccccc---cccceeeccCCCceEEEeccccccccCCCcccc
Confidence                                 4556677776  34445556666   67889999999999999998777776664 899


Q ss_pred             CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      ..|++++|+|-|.+|++|+.|.++++|.-...++
T Consensus       351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d  384 (464)
T KOG0284|consen  351 GEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD  384 (464)
T ss_pred             cceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence            9999999999999999999999999998665444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-40  Score=282.39  Aligned_cols=291  Identities=23%  Similarity=0.295  Sum_probs=261.9

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      +..+.+.+|..+|+.+-|+|+-.++++++.|++|++||..+++.   .....+|...|.+++|+..|++|++++.|-.++
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            55678899999999999999999999999999999999999855   335678988999999999999999999999999


Q ss_pred             EEECCCC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 010883          202 IVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN  280 (498)
Q Consensus       202 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~  280 (498)
                      +||.++. ++...                ..+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|...|.
T Consensus       176 LWd~~~~~~c~ks----------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr  239 (406)
T KOG0295|consen  176 LWDFDTFFRCIKS----------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR  239 (406)
T ss_pred             heeHHHHHHHHHH----------------hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence            9998763 11111                125677899999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC---------------CCEEEEEeCCC
Q 010883          281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---------------GRYLISNGKDQ  345 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---------------~~~l~s~~~dg  345 (498)
                      .+..+ .++.++++++.|.+|++|-+.    ...+...+..|..+|.+++|.|.               ++++.+++.|+
T Consensus       240 ~v~v~-~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  240 MVRVN-QDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             EEEec-CCeeEEEecCCCceEEEEEec----cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence            99997 899999999999999999997    77778889999999999999763               25899999999


Q ss_pred             cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec
Q 010883          346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  425 (498)
                      +|++||+.+                                  +.++.++.+|.....      ..+|+|.|+||+++..
T Consensus       315 tIk~wdv~t----------------------------------g~cL~tL~ghdnwVr------~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  315 TIKIWDVST----------------------------------GMCLFTLVGHDNWVR------GVAFSPGGKYILSCAD  354 (406)
T ss_pred             eEEEEeccC----------------------------------CeEEEEEecccceee------eeEEcCCCeEEEEEec
Confidence            999999998                                  578889999885433      3478889999999999


Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      |+++++||+.++++...+..|..-|+++.|+.+.++++||+-|.++++|.-
T Consensus       355 Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  355 DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999999999999999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.2e-41  Score=293.19  Aligned_cols=250  Identities=22%  Similarity=0.324  Sum_probs=224.7

Q ss_pred             CCCCCccccCCCCceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC
Q 010883          120 PVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS  197 (498)
Q Consensus       120 ~~~~~~~l~~h~~~v~~~~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d  197 (498)
                      ..+..+.|.+|.+.|.++.|+|.  +.-+|+|+.||++++|++++...+.   ...+|...|..++|+|+|++|++++.|
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~~L~TasfD  282 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGKFLGTASFD  282 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCceeeecccc
Confidence            34556789999999999999997  5689999999999999999864444   456788899999999999999999999


Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  277 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  277 (498)
                      .+-++||+.++.......                ||+.+|.+++|.+||..+++|+.|..-+|||++++.++..+.+|..
T Consensus       283 ~tWRlWD~~tk~ElL~QE----------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k  346 (459)
T KOG0272|consen  283 STWRLWDLETKSELLLQE----------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK  346 (459)
T ss_pred             cchhhcccccchhhHhhc----------------ccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence            999999999987544332                7999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCC
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      +|.+++|+ |+|..|++|+.|++++|||++    ....+..+.+|..-|+.+.|+| .|.+|++++.|++++||.-++  
T Consensus       347 ~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--  419 (459)
T KOG0272|consen  347 EILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--  419 (459)
T ss_pred             ceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--
Confidence            99999998 899999999999999999999    7777999999999999999998 788999999999999999887  


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD  433 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd  433 (498)
                                                      .+++..+.+|....      ++.++++|+.++++++.|.++++|.
T Consensus       420 --------------------------------~~~~ksLaGHe~kV------~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  420 --------------------------------WSPLKSLAGHEGKV------ISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             --------------------------------cccchhhcCCccce------EEEEeccCCceEEEeccCceeeecc
Confidence                                            47788888888432      3346777999999999999999995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6e-39  Score=309.88  Aligned_cols=290  Identities=33%  Similarity=0.531  Sum_probs=254.9

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC-CC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GS  207 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~-~~  207 (498)
                      .|...|.|+.|+++|++|++++.|+.+++|+..+.+. .......+|...|.+++|+|+++++++++.|++|+|||+ ..
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence            3488999999999999999999999999999976642 122233678889999999999999999999999999999 44


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      +.......                +|...|++++|+|+|+++++|+.|++|+|||++++++...+.+|...|++++|+ +
T Consensus       236 ~~~~~~l~----------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~-~  298 (456)
T KOG0266|consen  236 GRNLKTLK----------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS-P  298 (456)
T ss_pred             CeEEEEec----------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-C
Confidence            35444433                688899999999999999999999999999999999999999999999999996 8


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCc--eeEEecccccc--EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      ++++|++++.|+.|++||+.    .+.  +...+.++...  ++++.|+|++.+|++++.|+.+++||++.         
T Consensus       299 d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~---------  365 (456)
T KOG0266|consen  299 DGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS---------  365 (456)
T ss_pred             CCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC---------
Confidence            99999999999999999998    555  45666666655  99999999999999999999999999997         


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                               ...+..+.+|...   ..+.+++.+++++.++++|+.|+.|++||+.++..+..+
T Consensus       366 -------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l  417 (456)
T KOG0266|consen  366 -------------------------GKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL  417 (456)
T ss_pred             -------------------------CcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence                                     3566677777654   267778888899999999999999999999999999999


Q ss_pred             ccC-CCCeeeeEEcCCCCeEEEEe--CCCcEEEecCC
Q 010883          444 KYH-TSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP  477 (498)
Q Consensus       444 ~~h-~~~v~~l~~sp~~~~l~s~~--~Dg~i~iw~~~  477 (498)
                      .+| ...+..++|+|..+++++++  .|+.+++|...
T Consensus       418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999 89999999999999999998  78999999865

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.3e-40  Score=295.03  Aligned_cols=300  Identities=21%  Similarity=0.364  Sum_probs=257.5

Q ss_pred             ccccCCCCCccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCCCCCeEEE
Q 010883          116 SRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVY  193 (498)
Q Consensus       116 ~~~~~~~~~~~l~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  193 (498)
                      .-++|......+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.++.   ...+|..+|.+++|+++|..+++
T Consensus       199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~~fLS  275 (503)
T KOG0282|consen  199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGTSFLS  275 (503)
T ss_pred             eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCCeeee
Confidence            34668888889999999999999999 899999999999999999977 43333   55789999999999999999999


Q ss_pred             EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883          194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI  272 (498)
Q Consensus       194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~  272 (498)
                      ++.|+.|++||+++|++...+....                 .++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             eecceeeeeeccccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence            9999999999999999877766443                 68999999998 88999999999999999999999999


Q ss_pred             eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883          273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  351 (498)
                      ..|-+.|..+.|- +++..+++.+.|++++||+.+    ...++... ..+.....++..+|+++++++-+.|..|.++.
T Consensus       339 d~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~----~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  339 DRHLGAILDITFV-DEGRRFISSSDDKSVRIWENR----IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             HhhhhheeeeEEc-cCCceEeeeccCccEEEEEcC----CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence            9999999999998 889999999999999999987    33333322 22334567899999999999999999999998


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEE
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV  431 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  431 (498)
                      +...-.                               ...-..+.+|........+    .|||||.+|++|+.||.+.+
T Consensus       414 ~~~~~r-------------------------------~nkkK~feGh~vaGys~~v----~fSpDG~~l~SGdsdG~v~~  458 (503)
T KOG0282|consen  414 TVPPFR-------------------------------LNKKKRFEGHSVAGYSCQV----DFSPDGRTLCSGDSDGKVNF  458 (503)
T ss_pred             cccccc-------------------------------cCHhhhhcceeccCceeeE----EEcCCCCeEEeecCCccEEE
Confidence            654211                               1334456777765555554    56669999999999999999


Q ss_pred             EECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEec
Q 010883          432 YDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWE  475 (498)
Q Consensus       432 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~  475 (498)
                      ||.++-+++..+++|.+++..+.|+|..+ .+|||++||.|++|+
T Consensus       459 wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  459 WDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            99999999999999999999999999876 899999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-38  Score=281.43  Aligned_cols=280  Identities=20%  Similarity=0.348  Sum_probs=248.1

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      ...|++++|+.+|++||+|+.||.++||+...+    .......|.++|.++.|+.+|.||++++.|+++.+||..++..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence            457999999999999999999999999998764    3345678999999999999999999999999999999999887


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                      ...+.+                |..+-.++.|-.+. .+++.+.|+.|+|+.+....++.++.+|.+.|.++.|+ +.+.
T Consensus       311 ~q~f~~----------------~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~  372 (524)
T KOG0273|consen  311 KQQFEF----------------HSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGS  372 (524)
T ss_pred             EEeeee----------------ccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCc
Confidence            666553                33345678887554 59999999999999999999999999999999999997 8899


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---------RYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      +|++++.|++++||...    .......+.+|...|..+.|+|+|         ..|++++.|++|++||+..       
T Consensus       373 LLaS~SdD~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-------  441 (524)
T KOG0273|consen  373 LLASCSDDGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-------  441 (524)
T ss_pred             eEEEecCCCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-------
Confidence            99999999999999987    778888999999999999999965         4689999999999999988       


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                 +.++..|..|....      ++++|||+|+|+|+|+.||.|.+|++.+++.++
T Consensus       442 ---------------------------gv~i~~f~kH~~pV------ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  442 ---------------------------GVPIHTLMKHQEPV------YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             ---------------------------CceeEeeccCCCce------EEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence                                       57888888887433      445888899999999999999999999999999


Q ss_pred             EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      .+.+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus       489 s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  489 SYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9985 4569999999999999999999999998874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.6e-40  Score=309.40  Aligned_cols=290  Identities=24%  Similarity=0.398  Sum_probs=241.5

Q ss_pred             cccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC
Q 010883          117 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM  196 (498)
Q Consensus       117 ~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~  196 (498)
                      .-+|.-+...+..-...++|+.|++|++.||.|..|..|++|.+... ++.+.   .+       ..+-   ..+=+.+.
T Consensus       364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l---k~-------~~~l---~~~d~~sa  429 (707)
T KOG0263|consen  364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL---KD-------ASDL---SNIDTESA  429 (707)
T ss_pred             CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc---cc-------hhhh---cccccccc
Confidence            33455555666777788999999999999999999999999998753 22211   11       1111   11122333


Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                      |-.+.+.|-.++.....                ..||.++|..+.|+|+.++|++++.|++|++|.+.+..++..+.+|.
T Consensus       430 d~~~~~~D~~~~~~~~~----------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~  493 (707)
T KOG0263|consen  430 DVDVDMLDDDSSGTSRT----------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL  493 (707)
T ss_pred             chhhhhccccCCceeEE----------------eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC
Confidence            43455555444332221                23799999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      .+|.++.|+ |.|.+|++++.|++.++|...    ...+++.+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+  
T Consensus       494 ~PVwdV~F~-P~GyYFatas~D~tArLWs~d----~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~--  566 (707)
T KOG0263|consen  494 APVWDVQFA-PRGYYFATASHDQTARLWSTD----HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST--  566 (707)
T ss_pred             cceeeEEec-CCceEEEecCCCceeeeeecc----cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC--
Confidence            999999998 889999999999999999998    7889999999999999999999999999999999999999998  


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                                                      +..++.|.+|......+      +|||+|++|++|+.||.|.+||+.+
T Consensus       567 --------------------------------G~~VRiF~GH~~~V~al------~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  567 --------------------------------GNSVRIFTGHKGPVTAL------AFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             --------------------------------CcEEEEecCCCCceEEE------EEcCCCceEeecccCCcEEEEEcCC
Confidence                                            57889999988544333      6777999999999999999999999


Q ss_pred             CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       437 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      ++++..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+.....
T Consensus       609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            999999999999999999999999999999999999999875543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.2e-37  Score=274.72  Aligned_cols=343  Identities=19%  Similarity=0.268  Sum_probs=261.8

Q ss_pred             cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883          119 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  198 (498)
Q Consensus       119 ~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~  198 (498)
                      .|-+-...++.|..-|+|+.|+|||+++|+++.||+|.+||-.+|+.+..+.....|.+.|.+++|+||++.+++++.|.
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk  257 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK  257 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence            34444456788999999999999999999999999999999999999888777789999999999999999999999999


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD  278 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  278 (498)
                      +++|||+.+.++...+.+....+.             .-..+.|.  +..|++.+.+|.|.+++......+..+.+|...
T Consensus       258 t~KIWdVs~~slv~t~~~~~~v~d-------------qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~  322 (603)
T KOG0318|consen  258 TIKIWDVSTNSLVSTWPMGSTVED-------------QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKS  322 (603)
T ss_pred             eEEEEEeeccceEEEeecCCchhc-------------eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence            999999999988777665543221             34445565  557999999999999999999998999999999


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                      |++++.+ +++.+|++|+.||.|.-||..    .+..-... ..|...|.+++.+..+ .+++.+.|.++++.++.....
T Consensus       323 ITaLtv~-~d~~~i~SgsyDG~I~~W~~~----~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  323 ITALTVS-PDGKTIYSGSYDGHINSWDSG----SGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             eeEEEEc-CCCCEEEeeccCceEEEEecC----CccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcc
Confidence            9999998 778999999999999999986    33333222 5688889888877544 477778888888887743211


Q ss_pred             ccc-----------c---cc-----------------C----cccccccceeecCCcCcccccCC-CCceEEEEccCc--
Q 010883          358 NAS-----------C---NL-----------------G----FRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHS--  399 (498)
Q Consensus       358 ~~~-----------~---~~-----------------~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--  399 (498)
                      ...           .   ..                 .    ..........++..++...+... .+..++.+....  
T Consensus       397 t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~  476 (603)
T KOG0318|consen  397 TKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE  476 (603)
T ss_pred             cccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence            100           0   00                 0    01122334455556655554443 334444443221  


Q ss_pred             e-----eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE-EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883          400 V-----LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR  473 (498)
Q Consensus       400 ~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i  473 (498)
                      .     ...........+||||+.|||++...+.|.+||+.+.+... .+..|...|.+++|+|+..++|||+.|..|.|
T Consensus       477 l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vii  556 (603)
T KOG0318|consen  477 LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVII  556 (603)
T ss_pred             ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEE
Confidence            1     11111223445799999999999999999999999987632 33459999999999999999999999999999


Q ss_pred             ecCCCCCCC
Q 010883          474 WEFPGNGEA  482 (498)
Q Consensus       474 w~~~~~~~~  482 (498)
                      |++....+.
T Consensus       557 ysv~kP~~~  565 (603)
T KOG0318|consen  557 YSVKKPAKH  565 (603)
T ss_pred             EEccChhhh
Confidence            999876554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.6e-37  Score=265.22  Aligned_cols=290  Identities=17%  Similarity=0.248  Sum_probs=247.9

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+.+|.+.|.|+++.|-..+|++|+.|++|+|||+.+|...   ....+|-..|..+++|+...||++++.|+.|+.|
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            3467899999999999999999999999999999999999433   3456788899999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      |++..+.+....                ||-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.
T Consensus       221 DLe~nkvIR~Yh----------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  221 DLEYNKVIRHYH----------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             echhhhhHHHhc----------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence            999888765543                7888999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      +.|.+ -.+++|+.|++|++||++    .++....+..|...|.+++.+|....+++++.| .|+-|++..+        
T Consensus       285 ~~~~d-pqvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g--------  350 (460)
T KOG0285|consen  285 CQPTD-PQVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG--------  350 (460)
T ss_pred             eecCC-CceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc--------
Confidence            98544 467899999999999999    889999999999999999999999999999887 5899998763        


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                                ..+..+.+|..........       ...++++|+.+|.+.+||.++|-..+.+
T Consensus       351 --------------------------~f~~nlsgh~~iintl~~n-------sD~v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  351 --------------------------EFLQNLSGHNAIINTLSVN-------SDGVLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             --------------------------chhhccccccceeeeeeec-------cCceEEEcCCceEEEEEecCcCcccccc
Confidence                                      4444456665443333221       3458899999999999999998655444


Q ss_pred             c--------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          444 K--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       444 ~--------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      +        .....|.+.+|...|..|+||..|.+|++|.-...
T Consensus       398 ~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  398 QTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             cccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence            2        12456899999999999999999999999986543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.8e-36  Score=279.08  Aligned_cols=287  Identities=31%  Similarity=0.476  Sum_probs=243.7

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..+.+|.++|++++|+|++++|++++.||.|++|++.++.....   ...|...+..+.|+|++++|++++.++.|++|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASADGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence            45678999999999999999999999999999999988753332   345666889999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      +.+++......                .|...+.++.|+++++++++++.++.|.+||+.+++....+..|...+.+++|
T Consensus        80 ~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  143 (289)
T cd00200          80 LETGECVRTLT----------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF  143 (289)
T ss_pred             cCcccceEEEe----------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence            98764332222                24457999999999888888888999999999988888888889999999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      + +++.++++++.|+.|++||++    ..+.+..+..|...+.++.|+|+++.+++++.|+.|++||++..         
T Consensus       144 ~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------  209 (289)
T cd00200         144 S-PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------  209 (289)
T ss_pred             c-CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------
Confidence            8 668888888889999999997    66777788888889999999999999999999999999999862         


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  444 (498)
                                               ..+..+..+..  .+    ..+.++|++.++++++.||.|++||+.+++.+..+.
T Consensus       210 -------------------------~~~~~~~~~~~--~i----~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         210 -------------------------KCLGTLRGHEN--GV----NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             -------------------------ceecchhhcCC--ce----EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence                                     33333333332  22    233566688888888889999999999999999999


Q ss_pred             cCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      .|...|.+++|+|++++|++++.||.|++|+
T Consensus       259 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999999999999999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-37  Score=249.85  Aligned_cols=290  Identities=22%  Similarity=0.363  Sum_probs=253.3

Q ss_pred             cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883          119 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  198 (498)
Q Consensus       119 ~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~  198 (498)
                      +|......+..|.++|.++.|+-||+|.++++.|.+|++|+...|..+..   ..+|...|.+++.+.|+..+++++.|.
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCc
Confidence            36667778899999999999999999999999999999999999866654   457777999999999999999999999


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEEeccC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHT  276 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~--~~~~~~~~~~  276 (498)
                      .|.+||+.+|+....+.                +|.+.|+.++|+.+...+++|+.|.++++||.++.  ++++.+....
T Consensus        82 ~v~vwDV~TGkv~Rr~r----------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFR----------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             eEEEEEcccCeeeeecc----------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence            99999999999876655                78889999999999999999999999999998765  5677777788


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      ..|.++..+   +..|++|+.||+++.||++    .+.......+  .+|+++.|++|++..++++.|+++++.|-.+  
T Consensus       146 D~V~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~t--  214 (307)
T KOG0316|consen  146 DGVSSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKET--  214 (307)
T ss_pred             CceeEEEec---ccEEEeeccCCcEEEEEee----cceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccch--
Confidence            899999986   6689999999999999999    7766665554  5899999999999999999999999999888  


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                                                      ++.+..+++|.....-..|.+..    ....+++|++||.|++||+..
T Consensus       215 --------------------------------GklL~sYkGhkn~eykldc~l~q----sdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  215 --------------------------------GKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             --------------------------------hHHHHHhcccccceeeeeeeecc----cceeEEeccCCceEEEEEecc
Confidence                                            57778889998777777776554    567899999999999999999


Q ss_pred             CcEEEEeccCCCC-eeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          437 GEQVAALKYHTSP-VRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       437 ~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      ...+..+..|... |.+++++|.-..|+++.. +.+.+|.
T Consensus       259 ~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  259 ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             ceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence            9999999988877 899999999887777754 4566664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.2e-36  Score=313.91  Aligned_cols=295  Identities=20%  Similarity=0.349  Sum_probs=235.3

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV  200 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i  200 (498)
                      .+..|.+.|++++|+|+|++||+|+.|+.|+||++...    ...........+...|.+++|+| ++.+|++++.||+|
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            45669999999999999999999999999999997542    11100011112234799999987 47899999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      ++||+.+++......                +|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..|
T Consensus       558 ~lWd~~~~~~~~~~~----------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v  620 (793)
T PLN00181        558 QVWDVARSQLVTEMK----------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI  620 (793)
T ss_pred             EEEECCCCeEEEEec----------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence            999998876543322                5777999999997 7889999999999999999999888777644 689


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc-eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      .++.|+++++.+|++|+.||.|++||++    ... ++..+.+|...|.++.|. ++.+|++++.|+.|++||++.....
T Consensus       621 ~~v~~~~~~g~~latgs~dg~I~iwD~~----~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSADHKVYYYDLR----NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECC----CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence            9999987889999999999999999997    333 566778999999999997 6789999999999999999753210


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                      .                            ....+..+.+|......      ..|++++.+|++|+.|+.|++|+.....
T Consensus       696 ~----------------------------~~~~l~~~~gh~~~i~~------v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        696 I----------------------------NETPLHSFMGHTNVKNF------VGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             c----------------------------CCcceEEEcCCCCCeeE------EEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence            0                            02456677777643322      2567789999999999999999987665


Q ss_pred             EEEEe-------------ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          439 QVAAL-------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       439 ~~~~~-------------~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      .+..+             ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            44322             234567999999999999999999999999986

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.8e-37  Score=250.58  Aligned_cols=283  Identities=18%  Similarity=0.251  Sum_probs=234.8

Q ss_pred             cccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883          115 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA  194 (498)
Q Consensus       115 ~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  194 (498)
                      ++......+...++.-.+.|+.+.+.||++.||+++. ..||+||+.++... ......+|...|+++.|..+|+++++|
T Consensus        24 fWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTg  101 (311)
T KOG0315|consen   24 FWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTG  101 (311)
T ss_pred             eeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEec
Confidence            4444455555667777899999999999999999975 47999999987553 334556788899999999999999999


Q ss_pred             ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-
Q 010883          195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-  273 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-  273 (498)
                      +.||+++|||++...+.+.+.                 |..+|+++..+|+...|++|..+|.|++||+.+..+...+. 
T Consensus       102 seDgt~kIWdlR~~~~qR~~~-----------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen  102 SEDGTVKIWDLRSLSCQRNYQ-----------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP  164 (311)
T ss_pred             CCCceEEEEeccCcccchhcc-----------------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence            999999999999866655544                 34489999999999999999999999999999987766654 


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc--CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  351 (498)
                      .....|.+++.. +++.+++.+...|.+++|++-...  ..-.++..++.|.+.+..+.+|||+++|++++.|.+++||+
T Consensus       165 e~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn  243 (311)
T KOG0315|consen  165 EDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN  243 (311)
T ss_pred             CCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence            344689999997 899999999999999999986422  23457778899999999999999999999999999999999


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEE
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV  431 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  431 (498)
                      ...+-                                 ..-..+.+|.      +..|..+||.||.||++|+.|+.+++
T Consensus       244 ~~~~~---------------------------------kle~~l~gh~------rWvWdc~FS~dg~YlvTassd~~~rl  284 (311)
T KOG0315|consen  244 TDDFF---------------------------------KLELVLTGHQ------RWVWDCAFSADGEYLVTASSDHTARL  284 (311)
T ss_pred             cCCce---------------------------------eeEEEeecCC------ceEEeeeeccCccEEEecCCCCceee
Confidence            98741                                 2333445554      34455577779999999999999999


Q ss_pred             EECCCCcEEEEeccCCCCeeeeEEc
Q 010883          432 YDLVSGEQVAALKYHTSPVRDCSWH  456 (498)
Q Consensus       432 wd~~~~~~~~~~~~h~~~v~~l~~s  456 (498)
                      ||+..++.+..+.+|..+..|++..
T Consensus       285 W~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  285 WDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cccccCceeeecCCcccccEEEEee
Confidence            9999999999999998888877754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=9.4e-37  Score=261.46  Aligned_cols=325  Identities=17%  Similarity=0.193  Sum_probs=239.0

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      .....+..|+..|++++.+|+.+++|||+.|..-.||++.++...   ....+|...|+++.|+.+|.+||+|+.+|.|+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~FshdgtlLATGdmsG~v~  131 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGTLLATGDMSGKVL  131 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence            345678999999999999999999999999999999999999633   35578999999999999999999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      ||...++.....+...                -..+.-+.|+|.+..|++|+.||.|.+|.+.++...+.+.+|..++++
T Consensus       132 v~~~stg~~~~~~~~e----------------~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~  195 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQE----------------VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC  195 (399)
T ss_pred             EEEcccCceEEEeecc----------------cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence            9999998765444210                115888999999999999999999999999998888889999999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC----
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS----  356 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~----  356 (498)
                      =.|. |+|+.++++..||+|++|++.    ++.++..+... ....+++.++..+..++.|+.++.+++-+..+++    
T Consensus       196 G~f~-pdGKr~~tgy~dgti~~Wn~k----tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  196 GEFI-PDGKRILTGYDDGTIIVWNPK----TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             cccc-CCCceEEEEecCceEEEEecC----CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence            9998 679999999999999999997    66666665522 1234445555555555555555544444333211    


Q ss_pred             ---CccccccCcccccccceeecCCcCcccccCC-CC----------ceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          357 ---SNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CD----------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       357 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                         ...............+....+.......+.. -+          ..++..-.|.  ..++++.|-+     ..+|++
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he--~~V~~l~w~~-----t~~l~t  343 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE--DGVTKLKWLN-----TDYLLT  343 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC--CceEEEEEcC-----cchhee
Confidence               0111111111111111111111111111110 01          2222222233  2244444432     478999


Q ss_pred             EecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          423 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       423 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ++.+|.|+.||.++|+++.++.+|...|.+++++|+.++++|+|.|++.+|++++
T Consensus       344 ~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  344 ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999999999999999999999999999999999999999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.7e-36  Score=248.90  Aligned_cols=262  Identities=22%  Similarity=0.325  Sum_probs=224.9

Q ss_pred             eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883          170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  249 (498)
Q Consensus       170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l  249 (498)
                      ..+++|.+.|.++.|++|.++|++++.||.+.|||.-+......+.++.                ..|..++|+|.|+++
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s----------------~WVMtCA~sPSg~~V  112 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS----------------SWVMTCAYSPSGNFV  112 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc----------------eeEEEEEECCCCCeE
Confidence            4567899999999999999999999999999999988776555544332                279999999999999


Q ss_pred             EEEeCCCeEEEEECCCC------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc
Q 010883          250 VAGSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL  323 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  323 (498)
                      |+|+.|+...||++.+.      ...+.+.+|.+.+.|+.|. + ...|++++.|.++.+||++    +++.+..+.+|.
T Consensus       113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-d-D~~ilT~SGD~TCalWDie----~g~~~~~f~GH~  186 (343)
T KOG0286|consen  113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-D-DNHILTGSGDMTCALWDIE----TGQQTQVFHGHT  186 (343)
T ss_pred             EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEc-C-CCceEecCCCceEEEEEcc----cceEEEEecCCc
Confidence            99999999999999865      3456688999999999996 4 6678899999999999998    999999999999


Q ss_pred             ccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883          324 EGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR  402 (498)
Q Consensus       324 ~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (498)
                      +.|.+++++| +++.+++|+.|+..++||+|.                                  +..+++|.+|....
T Consensus       187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~----------------------------------~~c~qtF~ghesDI  232 (343)
T KOG0286|consen  187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS----------------------------------GQCVQTFEGHESDI  232 (343)
T ss_pred             ccEEEEecCCCCCCeEEecccccceeeeeccC----------------------------------cceeEeeccccccc
Confidence            9999999999 999999999999999999998                                  57888999998544


Q ss_pred             EEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ..+      .|-|+|.-+++|+.|++.++||++..+.+..+..  -..+|++++||..|++|++|..|.++.+||.-.++
T Consensus       233 Nsv------~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  233 NSV------RFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ceE------EEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence            333      4556999999999999999999999999888862  23689999999999999999999999999987766


Q ss_pred             CCCCcc-chhceee
Q 010883          481 EAAPPL-NKKRIRR  493 (498)
Q Consensus       481 ~~~~~~-~~~~~~~  493 (498)
                      ...... +..|+..
T Consensus       307 ~vg~L~GHeNRvSc  320 (343)
T KOG0286|consen  307 RVGVLAGHENRVSC  320 (343)
T ss_pred             eEEEeeccCCeeEE
Confidence            543322 3334443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-36  Score=248.29  Aligned_cols=255  Identities=21%  Similarity=0.299  Sum_probs=213.4

Q ss_pred             EeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC
Q 010883          169 DILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR  247 (498)
Q Consensus       169 ~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~  247 (498)
                      .....+|.+.|+.++..+. ...+++++.|..+.+|++.......           ........||...|..+..++||+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-----------G~~~r~~~GHsH~v~dv~~s~dg~   76 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-----------GVPVRRLTGHSHFVSDVVLSSDGN   76 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc-----------CceeeeeeccceEecceEEccCCc
Confidence            3456789999999999987 5688889999999999997652211           011122347888999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc--ccc
Q 010883          248 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LEG  325 (498)
Q Consensus       248 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~  325 (498)
                      +.++++.|+.+++||+.+++..+++.+|...|.+++|+ +++..+++|+.|.+|++|++     .+.+..++..+  .+.
T Consensus        77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt-----~g~ck~t~~~~~~~~W  150 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNT-----LGVCKYTIHEDSHREW  150 (315)
T ss_pred             eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec-CCCceeecCCCcceeeeeee-----cccEEEEEecCCCcCc
Confidence            99999999999999999999999999999999999998 88899999999999999998     46666666544  688


Q ss_pred             EEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          326 ITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       326 v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      |.++.|+|+  ..+|++++.|++|++||+++.                                  +....+.+|....+
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----------------------------------~l~~~~~gh~~~v~  196 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----------------------------------QLRTTFIGHSGYVN  196 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCc----------------------------------chhhccccccccEE
Confidence            999999998  689999999999999999983                                  34455666664333


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ..      ++||||.+.++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+. +..|+|||+......
T Consensus       197 t~------~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  197 TV------TVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV  267 (315)
T ss_pred             EE------EECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence            32      678899999999999999999999999988886 788999999999988777665 456999999887554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-36  Score=283.43  Aligned_cols=334  Identities=18%  Similarity=0.198  Sum_probs=267.2

Q ss_pred             cccccccccccCCCCCccccCCCCceEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC
Q 010883          109 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP  186 (498)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~--~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp  186 (498)
                      ++....++++--......|.+|.+.|.++.|+|+-+  +|++|..|+++++||+.+...  .......|...|++++|++
T Consensus       125 aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~  202 (775)
T KOG0319|consen  125 ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSE  202 (775)
T ss_pred             ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeecc
Confidence            345556677777777789999999999999999875  588999999999999997533  2344567888999999999


Q ss_pred             CCCeEEEEECCCeEEEEECCCCceeccccccccccCccc-------------------------------------ccc-
Q 010883          187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDF-------------------------------------SAA-  228 (498)
Q Consensus       187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~-  228 (498)
                      |+..+++++.|..+.|||+.+.+........+..++..+                                     +.. 
T Consensus       203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~  282 (775)
T KOG0319|consen  203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE  282 (775)
T ss_pred             CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence            999999999999999999865433221111100000000                                     000 


Q ss_pred             -----------------------------------------------------------------------------CCC
Q 010883          229 -----------------------------------------------------------------------------DDG  231 (498)
Q Consensus       229 -----------------------------------------------------------------------------~~~  231 (498)
                                                                                                   .-.
T Consensus       283 e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~  362 (775)
T KOG0319|consen  283 EIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIP  362 (775)
T ss_pred             hhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEe
Confidence                                                                                         001


Q ss_pred             CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                      ||+..|.++....+|-+|++|+.|.++++|.++.+.    ++....+|...|.+++++.....+|+++|.|+++++|++.
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~  442 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP  442 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence            788889999866678899999999999999885443    3445669999999999987777899999999999999997


Q ss_pred             cccCCCcee-E----EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883          308 CLNVKGKPA-G----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR  382 (498)
Q Consensus       308 ~~~~~~~~~-~----~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      .......++ .    ....|...|++++++|+.++|+||+.|++.+||++..                            
T Consensus       443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~----------------------------  494 (775)
T KOG0319|consen  443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ----------------------------  494 (775)
T ss_pred             CcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC----------------------------
Confidence            422121111 1    3456999999999999999999999999999999985                            


Q ss_pred             cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeE
Q 010883          383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML  462 (498)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l  462 (498)
                            .+...++.+|.      +..|+..|+|..+.++++|.|++|+||.+.+..+++++.+|...|..+.|-.+++.|
T Consensus       495 ------~~l~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ql  562 (775)
T KOG0319|consen  495 ------LRLLGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQL  562 (775)
T ss_pred             ------ceEEEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEE
Confidence                  36788889988      344666788899999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEecCCCCCCCCC
Q 010883          463 VSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       463 ~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      +|++.||.|++|++.+++....
T Consensus       563 iS~~adGliKlWnikt~eC~~t  584 (775)
T KOG0319|consen  563 ISAGADGLIKLWNIKTNECEMT  584 (775)
T ss_pred             EeccCCCcEEEEeccchhhhhh
Confidence            9999999999999998876543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-36  Score=279.93  Aligned_cols=302  Identities=21%  Similarity=0.311  Sum_probs=253.9

Q ss_pred             CCCccccCCCCceEEEEE-cCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeE
Q 010883          122 NGPWPVDQTTSRAYVSQF-SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV  200 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~-s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i  200 (498)
                      .....+-|..+.|..++| .|+.++||.++..+.+|+|++.+....    ...+|...|.++....+|-+|++++.|+++
T Consensus       314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~sKD~sv  389 (775)
T KOG0319|consen  314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATGSKDKSV  389 (775)
T ss_pred             EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----EEeCchhheeeeeecccCcEEEEecCCceE
Confidence            334556788899999987 567799999999999999998876333    457899999999966778999999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee-----eE----
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-----SL----  270 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~-----~~----  270 (498)
                      ++|.++.+.......            ....+|+..|.+++++..+ .+|++++.|.++++|++...+.     ..    
T Consensus       390 ilWr~~~~~~~~~~~------------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~  457 (775)
T KOG0319|consen  390 ILWRLNNNCSKSLCV------------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY  457 (775)
T ss_pred             EEEEecCCcchhhhh------------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence            999985443322111            1123788899999998754 5899999999999999976221     11    


Q ss_pred             EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          271 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       271 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      ....|...|+|++++ |++.++++||.|.+.+||++.    ......++.+|..+|.++.|+|..+.+++++.|++|+||
T Consensus       458 t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  458 TERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW  532 (775)
T ss_pred             HHHhhcccccceEec-CCCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence            223799999999998 889999999999999999998    888999999999999999999999999999999999999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY  430 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  430 (498)
                      .+.+                                  ..++.++.+|..  .+.++.|    -.+|+.|++++.||-|+
T Consensus       533 ~is~----------------------------------fSClkT~eGH~~--aVlra~F----~~~~~qliS~~adGliK  572 (775)
T KOG0319|consen  533 SIST----------------------------------FSCLKTFEGHTS--AVLRASF----IRNGKQLISAGADGLIK  572 (775)
T ss_pred             Eecc----------------------------------ceeeeeecCccc--eeEeeee----eeCCcEEEeccCCCcEE
Confidence            9998                                  478889999983  4444443    34899999999999999


Q ss_pred             EEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       431 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      +|++.+++++.++..|.+.|++++.+|...+++||+.||.|.+|.=.+..+...
T Consensus       573 lWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~e  626 (775)
T KOG0319|consen  573 LWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNE  626 (775)
T ss_pred             EEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHH
Confidence            999999999999999999999999999999999999999999997555544433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.9e-37  Score=261.99  Aligned_cols=275  Identities=26%  Similarity=0.386  Sum_probs=233.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ....|+|+++.  ...+++|..|++|+|||.++-....   ...+|.+.|.|+.|  +.+.|++|+.|.+|+|||+++++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence            46679999995  4569999999999999998754333   45789999999998  56799999999999999999998


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEEeccCCCeeEEEEeC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~  286 (498)
                      .....-                +|...|..+.|+  +.++++++.|.+|.+||+.....   .+.+.+|...|+.+.|. 
T Consensus       269 ~l~tli----------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-  329 (499)
T KOG0281|consen  269 PLNTLI----------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-  329 (499)
T ss_pred             hhhHHh----------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence            765543                577789999997  34899999999999999987652   23466999999999995 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                        .+++++++.|.+|++|++.    +...+.++.+|..+|.|+.+  .++++++|+.|.+|++||+..            
T Consensus       330 --~kyIVsASgDRTikvW~~s----t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~------------  389 (499)
T KOG0281|consen  330 --DKYIVSASGDRTIKVWSTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC------------  389 (499)
T ss_pred             --cceEEEecCCceEEEEecc----ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc------------
Confidence              4599999999999999998    88999999999999999988  578999999999999999987            


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc--------
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--------  438 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--------  438 (498)
                                            +..+..+++|......+++        |.+.+++|..||+|+|||+..+.        
T Consensus       390 ----------------------G~cLRvLeGHEeLvRciRF--------d~krIVSGaYDGkikvWdl~aaldpra~~~~  439 (499)
T KOG0281|consen  390 ----------------------GACLRVLEGHEELVRCIRF--------DNKRIVSGAYDGKIKVWDLQAALDPRAPAST  439 (499)
T ss_pred             ----------------------cHHHHHHhchHHhhhheee--------cCceeeeccccceEEEEecccccCCcccccc
Confidence                                  5677788888866555433        78899999999999999998764        


Q ss_pred             -EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          439 -QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       439 -~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                       ++..+..|.+.|..+.|  |...+++++.|.+|.|||+.++...
T Consensus       440 ~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  440 LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence             23445579999999999  6778999999999999999877544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-34  Score=267.13  Aligned_cols=299  Identities=18%  Similarity=0.347  Sum_probs=254.5

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-----------------------CeE--------EEEEe
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----------------------GWK--------IQKDI  170 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~-----------------------~~~--------~~~~~  170 (498)
                      -.+..+.+|++.|-.+-|..|..-+++.+.||.+.+|....                       ++.        ..+..
T Consensus       180 ~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~  259 (893)
T KOG0291|consen  180 LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH  259 (893)
T ss_pred             cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEee
Confidence            34678899999999999999999999999999999998771                       111        01111


Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ........|++.+|++..+.|++|-..|...++.+..-.++....+..                .+|..++|+..|.+||
T Consensus       260 ~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~----------------~~I~t~~~N~tGDWiA  323 (893)
T KOG0291|consen  260 YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD----------------QKILTVSFNSTGDWIA  323 (893)
T ss_pred             eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc----------------ceeeEEEecccCCEEE
Confidence            122223579999999999999999999999999999887766665442                2799999999999999


Q ss_pred             EEeCC-CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          251 AGSSD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       251 ~g~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      .|+.. |.+.||+..+..-+....+|...+++++++ |+++++++|+.||.|+|||..    .+-+..++..|+..|+.+
T Consensus       324 ~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~----SgfC~vTFteHts~Vt~v  398 (893)
T KOG0291|consen  324 FGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQ----SGFCFVTFTEHTSGVTAV  398 (893)
T ss_pred             EcCCccceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEecc----CceEEEEeccCCCceEEE
Confidence            99865 899999999999888889999999999998 899999999999999999998    889999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      .|+..|+.+++.+.||+|+.||+...                                  ...++|........     .
T Consensus       399 ~f~~~g~~llssSLDGtVRAwDlkRY----------------------------------rNfRTft~P~p~Qf-----s  439 (893)
T KOG0291|consen  399 QFTARGNVLLSSSLDGTVRAWDLKRY----------------------------------RNFRTFTSPEPIQF-----S  439 (893)
T ss_pred             EEEecCCEEEEeecCCeEEeeeeccc----------------------------------ceeeeecCCCceee-----e
Confidence            99999999999999999999999873                                  44455544432111     1


Q ss_pred             ccccCCCCcEEEEEecCC-eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          410 SPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +.+..|.|.++.+|+.|. .|++|++.+|+++-.+.+|.+||.+++|+|++..|+|+++|.+|++|++-...
T Consensus       440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~  511 (893)
T KOG0291|consen  440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS  511 (893)
T ss_pred             EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence            224556799999999886 69999999999999999999999999999999999999999999999997663

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-33  Score=253.39  Aligned_cols=311  Identities=18%  Similarity=0.263  Sum_probs=253.9

Q ss_pred             ccccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC
Q 010883          108 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD  187 (498)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  187 (498)
                      ..+.+.+....-.........+|..+++...|||.|.|+|+|...|+|||||....+.+.+. ......++|.+++|++|
T Consensus        36 ~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn-ef~v~aG~I~Di~Wd~d  114 (603)
T KOG0318|consen   36 TNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN-EFQVLAGPIKDISWDFD  114 (603)
T ss_pred             eCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee-eeeecccccccceeCCC
Confidence            34444444444444556778899999999999999999999999999999998774444332 23345569999999999


Q ss_pred             CCeEEEEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 010883          188 QRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYD  262 (498)
Q Consensus       188 ~~~l~~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd  262 (498)
                      ++.|++.+..    |.+.+||..+  ....+                .||...|+++.|-|.-. .+++|+.|++|.+|+
T Consensus       115 s~RI~avGEGrerfg~~F~~DSG~--SvGei----------------~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe  176 (603)
T KOG0318|consen  115 SKRIAAVGEGRERFGHVFLWDSGN--SVGEI----------------TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE  176 (603)
T ss_pred             CcEEEEEecCccceeEEEEecCCC--cccee----------------eccceeEeeeeccCCCceEEEeccCCCeEEEee
Confidence            9999987753    3566676543  22221                27888999999998655 689999999999998


Q ss_pred             CCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec---cccccEEEEEEcCCCCEEE
Q 010883          263 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLI  339 (498)
Q Consensus       263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~  339 (498)
                      =.--+....+..|...|+|+.|+ |++.++++.+.||.|.+||-.    .++.+..+.   +|.+.|.+++|+||+..|+
T Consensus       177 GPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGk----tge~vg~l~~~~aHkGsIfalsWsPDs~~~~  251 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGK----TGEKVGELEDSDAHKGSIFALSWSPDSTQFL  251 (603)
T ss_pred             CCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCC----CccEEEEecCCCCccccEEEEEECCCCceEE
Confidence            77777777888999999999998 789999999999999999987    888888887   8999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-eeEEEEEEEeccccCCCCc
Q 010883          340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQK  418 (498)
Q Consensus       340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~  418 (498)
                      +++.|.+++|||+.+.                                  ..+.++.... .......|.|.      +.
T Consensus       252 T~SaDkt~KIWdVs~~----------------------------------slv~t~~~~~~v~dqqvG~lWq------kd  291 (603)
T KOG0318|consen  252 TVSADKTIKIWDVSTN----------------------------------SLVSTWPMGSTVEDQQVGCLWQ------KD  291 (603)
T ss_pred             EecCCceEEEEEeecc----------------------------------ceEEEeecCCchhceEEEEEEe------CC
Confidence            9999999999999884                                  3344443222 12233444443      56


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       419 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .|++.+.+|.|.+++......+..+.+|...|+++..+|++++|++|+.||.|.-|+...+...
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence            7999999999999999999999999999999999999999999999999999999999877654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.4e-34  Score=266.37  Aligned_cols=294  Identities=19%  Similarity=0.305  Sum_probs=250.0

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-CeEEEEECCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVGS  207 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~~i~iwd~~~  207 (498)
                      .....|+|.+|++.-+.||+|...|...+|.+..-..++......   .+|..++|+..|.+||.|+.. |.+-||++.+
T Consensus       263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs  339 (893)
T KOG0291|consen  263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS  339 (893)
T ss_pred             ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence            344889999999999999999999999999999876666554332   279999999999999998764 7999999988


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      ...+...+                +|...+++++++|||+++|+|+.||.|+|||..++-+..++..|++.|+.+.|+ .
T Consensus       340 EsYVlKQQ----------------gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~  402 (893)
T KOG0291|consen  340 ESYVLKQQ----------------GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-A  402 (893)
T ss_pred             cceeeecc----------------ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-e
Confidence            66543322                688899999999999999999999999999999999999999999999999998 8


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-ccEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCCCccccccCc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGF  365 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~  365 (498)
                      .++.+++.+-||+|+.||+.    .....+++.... ....+++..|.|..+++|+.|. .|.+|++.+           
T Consensus       403 ~g~~llssSLDGtVRAwDlk----RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-----------  467 (893)
T KOG0291|consen  403 RGNVLLSSSLDGTVRAWDLK----RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-----------  467 (893)
T ss_pred             cCCEEEEeecCCeEEeeeec----ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-----------
Confidence            89999999999999999997    777777777543 3467889999999999999886 499999998           


Q ss_pred             ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc-EEEEec
Q 010883          366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALK  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~  444 (498)
                                             ++.+..+.+|....      .+.+|+|++..|++++.|.+|++||+-... .+.++.
T Consensus       468 -----------------------GqllDiLsGHEgPV------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~  518 (893)
T KOG0291|consen  468 -----------------------GQLLDILSGHEGPV------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE  518 (893)
T ss_pred             -----------------------CeeeehhcCCCCcc------eeeEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence                                   57888889998433      233677799999999999999999986653 444554


Q ss_pred             cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccc
Q 010883          445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN  487 (498)
Q Consensus       445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~  487 (498)
                       +...+..++|+|+|+.|+++..||.|.+||.....+...+..
T Consensus       519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence             677899999999999999999999999999988766644333

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.4e-36  Score=252.06  Aligned_cols=288  Identities=22%  Similarity=0.295  Sum_probs=245.6

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-----EeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-----DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      +.++.+-|..|||||+||++|+.||.|.|||..+|+....     .....-+..+|.|+.|+.|...||+|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            4577789999999999999999999999999998832211     11122345689999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      .+.+|.+...+.-               .|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..+.+|.+.|+...
T Consensus       291 ri~tG~ClRrFdr---------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  291 RIETGQCLRRFDR---------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             EEecchHHHHhhh---------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence            9999998765542               4777999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--ccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNAS  360 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~  360 (498)
                      |. ++|+.+++++.||+|++|+..    ...++.++..  ..-+|+.+-.-| +..+++++....+|+|.++..      
T Consensus       356 ft-~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------  424 (508)
T KOG0275|consen  356 FT-DDGHHIISASSDGTVKVWHGK----TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------  424 (508)
T ss_pred             Ec-CCCCeEEEecCCccEEEecCc----chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------
Confidence            98 899999999999999999997    6677766654  344677777666 557899999999999999875      


Q ss_pred             cccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                                                   +.++.+... ......+.+    +.||.|.++++.+.|+.++.|.+.+|++
T Consensus       425 -----------------------------QvVrsfsSGkREgGdFi~~----~lSpkGewiYcigED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  425 -----------------------------QVVRSFSSGKREGGDFINA----ILSPKGEWIYCIGEDGVLYCFSVLSGKL  471 (508)
T ss_pred             -----------------------------eEEeeeccCCccCCceEEE----EecCCCcEEEEEccCcEEEEEEeecCce
Confidence                                         667766533 333344444    4566899999999999999999999999


Q ss_pred             EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       440 ~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      ..++..|...|..++-+|..+.||+-+.||.+++|.
T Consensus       472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999999999999999999999996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.8e-35  Score=265.83  Aligned_cols=286  Identities=21%  Similarity=0.259  Sum_probs=249.3

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..+..++.+|.++.|+|...+++++-.+|.|.|||.++...+......   .-+|.+..|-+..+++++|+.|..|+||+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~---~~PvRa~kfiaRknWiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS---EVPVRAAKFIARKNWIVTGSDDMQIRVFN   83 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec---ccchhhheeeeccceEEEecCCceEEEEe
Confidence            345568999999999999999999999999999999987555544333   33899999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC  283 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~  283 (498)
                      ..+++....+.                .|+.-|.+++.+|...++++++.|-.|++||.+.. .+.+.+.+|.-.|.+++
T Consensus        84 ynt~ekV~~Fe----------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~  147 (794)
T KOG0276|consen   84 YNTGEKVKTFE----------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA  147 (794)
T ss_pred             cccceeeEEee----------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence            99988765554                57889999999999999999999999999999764 56778899999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      |+|.+.+.+++++-|++|++|.+.    ...+..++.+|..+|+++.+-+.  ..+|++|+.|.+|+|||..+       
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-------  216 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-------  216 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-------
Confidence            999999999999999999999998    78888999999999999999764  47999999999999999998       


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                 ..++.++.+|...  +....|.|    .-.++++|++||+++||+..+-++..
T Consensus       217 ---------------------------k~CV~TLeGHt~N--vs~v~fhp----~lpiiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  217 ---------------------------KSCVQTLEGHTNN--VSFVFFHP----ELPIIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             ---------------------------HHHHHHhhccccc--ceEEEecC----CCcEEEEecCCccEEEecCcceehhh
Confidence                                       4678888898843  33444444    56799999999999999999999888


Q ss_pred             EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883          442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR  473 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i  473 (498)
                      ++...-+.|++++-.+.+..++.|.+.|.|.+
T Consensus       264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            88877889999999998888888887776643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.2e-35  Score=276.22  Aligned_cols=206  Identities=22%  Similarity=0.350  Sum_probs=191.8

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..+-+|.++|+.+.|+|+.++|++++.|++||+|.+.+..   ......+|..+|.++.|+|.|-|+|+++.|++.++|.
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccce---eEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence            3478999999999999999999999999999999999863   3345569999999999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      .......+++.                ||-..|.|+.|+|+..++++|+.|.+|++||+.+|..++.+.+|.++|.+++|
T Consensus       522 ~d~~~PlRifa----------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~  585 (707)
T KOG0263|consen  522 TDHNKPLRIFA----------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF  585 (707)
T ss_pred             cccCCchhhhc----------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence            98866555444                67779999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      + |+|.+|++|+.||.|.+||+.    .+..+..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+..
T Consensus       586 S-p~Gr~LaSg~ed~~I~iWDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  586 S-PCGRYLASGDEDGLIKIWDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             c-CCCceEeecccCCcEEEEEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            8 799999999999999999998    8899999999999999999999999999999999999999986

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-34  Score=234.69  Aligned_cols=290  Identities=20%  Similarity=0.303  Sum_probs=239.2

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      |..+.+|..+++.+.++.+|.+|.+++.|.++.||-..+|+.+.   ...+|.+.|.++...-+.++|++|+.|.++++|
T Consensus         3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW   79 (327)
T ss_pred             ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence            45688999999999999999999999999999999998886665   457999999999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCeeeEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLE-------ANKLSLR  271 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----dg~i~vwd~~-------~~~~~~~  271 (498)
                      |+++|+....++...                 +|..+.|+++|++++....     .+.|.++|++       ..++...
T Consensus        80 Dv~tGk~la~~k~~~-----------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   80 DVETGKQLATWKTNS-----------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             EcCCCcEEEEeecCC-----------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            999999887776544                 7999999999998877654     4679999998       4566788


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      +..+.+.++.+-|. +.+++|++|..||.|..||++    ++ ..+.....|...|+.+++++|..++++++.|.+-++|
T Consensus       143 I~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~----~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~  217 (327)
T KOG0643|consen  143 IPTPDSKITSALWG-PLGETIIAGHEDGSISIYDAR----TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV  217 (327)
T ss_pred             ecCCccceeeeeec-ccCCEEEEecCCCcEEEEEcc----cCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence            88899999999997 789999999999999999998    54 4555667899999999999999999999999999999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe--
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC--  428 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~--  428 (498)
                      |+++.                                  ..+++|.....   +    .+.+++|-...++.|+....  
T Consensus       218 D~~tl----------------------------------~v~Kty~te~P---v----N~aaisP~~d~VilgGGqeA~d  256 (327)
T KOG0643|consen  218 DVRTL----------------------------------EVLKTYTTERP---V----NTAAISPLLDHVILGGGQEAMD  256 (327)
T ss_pred             eccce----------------------------------eeEEEeeeccc---c----cceecccccceEEecCCceeee
Confidence            99884                                  34444443322   1    22355666666666543221  


Q ss_pred             ------------EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          429 ------------VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       429 ------------i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                                  -++|++-..+.+..+++|-++|++++|+|+|+..++|+.||.|++..+...
T Consensus       257 VTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  257 VTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             eeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence                        223333333567788899999999999999999999999999999877543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.5e-34  Score=233.01  Aligned_cols=288  Identities=18%  Similarity=0.333  Sum_probs=240.3

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV  203 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iw  203 (498)
                      ..+++|...|.+++|+.+|..||+|+.|+++.||+++.. .........+|...|-.++|+| ....+++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            456789999999999999999999999999999999877 3444456678888999999998 45789999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      |+..+++........                 .=.-+.|+|+|.++++++.|..|.+.|.++.+..... .....+..++
T Consensus        93 d~r~~k~~~~i~~~~-----------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~  154 (313)
T KOG1407|consen   93 DIRSGKCTARIETKG-----------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS  154 (313)
T ss_pred             EeccCcEEEEeeccC-----------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence            999998766554332                 3345799999999999999999999999988776554 4556788899


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      |+ .++++++.....|.|.|....    .-+++..+++|.....||.|+|+|++||+|+.|..+.+||+..+-       
T Consensus       155 w~-~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi-------  222 (313)
T KOG1407|consen  155 WN-NSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI-------  222 (313)
T ss_pred             ec-CCCCEEEEecCCceEEEEecc----ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh-------
Confidence            98 777888888888999999987    788999999999999999999999999999999999999998743       


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                                 +++.+..+.-..      ..+.||-||++||+|++|..|-|=++.+|..+..+
T Consensus       223 ---------------------------C~R~isRldwpV------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI  269 (313)
T KOG1407|consen  223 ---------------------------CERCISRLDWPV------RTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI  269 (313)
T ss_pred             ---------------------------hheeeccccCce------EEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence                                       223333333211      12257779999999999999999999999999999


Q ss_pred             ccCCCCeeeeEEcCCCCeEEEEeCC---------CcEEEecCC
Q 010883          444 KYHTSPVRDCSWHPSQPMLVSSSWD---------GDVVRWEFP  477 (498)
Q Consensus       444 ~~h~~~v~~l~~sp~~~~l~s~~~D---------g~i~iw~~~  477 (498)
                      + +.++-..++|+|...+||-+++|         |.|+++-++
T Consensus       270 ~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  270 P-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             e-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            7 88999999999999999988765         456666554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.1e-35  Score=239.59  Aligned_cols=292  Identities=22%  Similarity=0.327  Sum_probs=247.4

Q ss_pred             CCccccCCCCceEEEEEcC---CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          123 GPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~---dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      .+....+|+.+|..++|||   +|-+|++++.|+.-.+-+-++|.-+.   ...+|.+.|....+..+...-++++.|-+
T Consensus         6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~~aasaaadft   82 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNATRAASAAADFT   82 (334)
T ss_pred             CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhhhhhhhcccch
Confidence            3567789999999999986   88999999999999999988885555   44688899999999998888899999999


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCC
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSD  278 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~  278 (498)
                      -+|||.-+|.....+.                 |..-|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.
T Consensus        83 akvw~a~tgdelhsf~-----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~  145 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFE-----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG  145 (334)
T ss_pred             hhhhhhhhhhhhhhhh-----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence            9999999887655544                 44479999999999999999999999999998765 45667899999


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      |..+.|+ ...+.|++++.|++||+||.+    +++.+..+. ...+|+++.++++|++|.++ ..+.|.+||..+..  
T Consensus       146 Ir~v~wc-~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~--  216 (334)
T KOG0278|consen  146 IRTVLWC-HEDKCILSSADDKTVRLWDHR----TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG--  216 (334)
T ss_pred             ceeEEEe-ccCceEEeeccCCceEEEEec----cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccccc--
Confidence            9999998 677788888999999999999    888888876 46789999999999876655 45679999998743  


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                                                      .++.++....       ..+...+|+...+++|++|..++.||..+++
T Consensus       217 --------------------------------~lKs~k~P~n-------V~SASL~P~k~~fVaGged~~~~kfDy~Tge  257 (334)
T KOG0278|consen  217 --------------------------------LLKSYKMPCN-------VESASLHPKKEFFVAGGEDFKVYKFDYNTGE  257 (334)
T ss_pred             --------------------------------ceeeccCccc-------cccccccCCCceEEecCcceEEEEEeccCCc
Confidence                                            3333332221       1233577788999999999999999999999


Q ss_pred             EEEEe-ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          439 QVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       439 ~~~~~-~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .+..+ ++|.++|.|+.|+|+|...++|+.||+|++|....++..
T Consensus       258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99886 899999999999999999999999999999998766543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.7e-35  Score=257.51  Aligned_cols=303  Identities=22%  Similarity=0.305  Sum_probs=251.2

Q ss_pred             cccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe
Q 010883          111 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH  190 (498)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  190 (498)
                      ..+.+...+|......++.|.+.|..+.|-++...|++|+.|..|++|++..++ ........+..+.|+.+.|.+++++
T Consensus       155 ~d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~  233 (459)
T KOG0288|consen  155 DDHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKH  233 (459)
T ss_pred             CchhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCce
Confidence            367788999999999999999999999999999999999999999999998653 2333344566678999999999999


Q ss_pred             EEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 010883          191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL  270 (498)
Q Consensus       191 l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~  270 (498)
                      +++++.|+.+++|++...+......                ||+..|+++.|......+++|+.|.+|++||+....+..
T Consensus       234 ~iAas~d~~~r~Wnvd~~r~~~TLs----------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  234 VIAASNDKNLRLWNVDSLRLRHTLS----------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             EEeecCCCceeeeeccchhhhhhhc----------------ccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence            9999999999999999887655443                788999999999877779999999999999999988876


Q ss_pred             EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          271 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       271 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      ++. ....+..|+.+   ...+++|..|++|++||.+    ...+......+ +.|+++..++++..|.+++.|.++.+.
T Consensus       298 t~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~vi  368 (459)
T KOG0288|consen  298 TVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVI  368 (459)
T ss_pred             ccc-ccccccceEec---ceeeeecccccceEEEecc----CCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeee
Confidence            663 34556777764   5578999999999999998    77777777765 499999999999999999999999999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY  430 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  430 (498)
                      |+++..                                  ....+........  .-.....|||++.|+++|+.||.|+
T Consensus       369 DlRt~e----------------------------------I~~~~sA~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~  412 (459)
T KOG0288|consen  369 DLRTKE----------------------------------IRQTFSAEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVY  412 (459)
T ss_pred             eccccc----------------------------------EEEEeeccccccc--cccceeEECCCCceeeeccCCCcEE
Confidence            999843                                  2333322211000  0012235788999999999999999


Q ss_pred             EEECCCCcEEEEeccCCC--CeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          431 VYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       431 iwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      ||++.++++...+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            999999999988875444  599999999999999999999999994

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6e-36  Score=254.79  Aligned_cols=251  Identities=24%  Similarity=0.389  Sum_probs=213.0

Q ss_pred             ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883          176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  255 (498)
Q Consensus       176 ~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d  255 (498)
                      ...|.|+.+  |...+++|..|++|+|||..+-.+.....                ||++.|.|+.|.  .+.|++|+.|
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~----------------GHtGSVLCLqyd--~rviisGSSD  256 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILT----------------GHTGSVLCLQYD--ERVIVSGSSD  256 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhh----------------cCCCcEEeeecc--ceEEEecCCC
Confidence            347999988  66779999999999999998866644433                799999999995  5699999999


Q ss_pred             CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883          256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG  335 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  335 (498)
                      .+|++||+++++++.++..|...|..+.|+   +.++++++.|.++.+||+.... .......+.+|...|+.+.|+  .
T Consensus       257 sTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~  330 (499)
T KOG0281|consen  257 STVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--D  330 (499)
T ss_pred             ceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--c
Confidence            999999999999999999999999999997   5699999999999999997443 334556788999999999995  5


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883          336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST  415 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  415 (498)
                      ++|++++.|.+|++|++.+                                  ...+.++.+|.......      .|  
T Consensus       331 kyIVsASgDRTikvW~~st----------------------------------~efvRtl~gHkRGIACl------QY--  368 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTST----------------------------------CEFVRTLNGHKRGIACL------QY--  368 (499)
T ss_pred             ceEEEecCCceEEEEeccc----------------------------------eeeehhhhcccccceeh------hc--
Confidence            6999999999999999988                                  46778888887433322      22  


Q ss_pred             CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCc----------
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP----------  485 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~----------  485 (498)
                      .++++++|+.|.+|++||+..|.++..+++|+.-|.++.|  |.+.+++|+.||+|++||+..+..+..+          
T Consensus       369 r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv  446 (499)
T KOG0281|consen  369 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV  446 (499)
T ss_pred             cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhh
Confidence            6899999999999999999999999999999999999999  6778999999999999999988766332          


Q ss_pred             cchhceeecee
Q 010883          486 LNKKRIRRRQF  496 (498)
Q Consensus       486 ~~~~~~~~~~f  496 (498)
                      .+..|+.++||
T Consensus       447 ~hsgRVFrLQF  457 (499)
T KOG0281|consen  447 EHSGRVFRLQF  457 (499)
T ss_pred             hccceeEEEee
Confidence            23446666665

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=247.49  Aligned_cols=259  Identities=23%  Similarity=0.356  Sum_probs=220.9

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|..+|+.+-|+|+-..+++++.|++|++||..+++.....+                ||+..+.+++|+..|++|+
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr----------------GHt~sv~di~~~a~Gk~l~  166 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR----------------GHTDSVFDISFDASGKYLA  166 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh----------------ccccceeEEEEecCccEEE
Confidence            345688899999999999999999999999999999998744433                7888999999999999999


Q ss_pred             EEeCCCeEEEEECCC-CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          251 AGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      +++.|-.+.+||..+ .+++..+.+|.-.|.+++|- |.+.++++++.|.+|+.|++.    .+.++.++.+|.+.|..+
T Consensus       167 tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr~v  241 (406)
T KOG0295|consen  167 TCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVRMV  241 (406)
T ss_pred             ecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecc----cceeEEeccCchHhEEEE
Confidence            999999999999987 45667777999999999998 678999999999999999998    999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      +.+.||.++++++.|.+|++|-+.+.+..                                  ..++.|......+...-
T Consensus       242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k----------------------------------~~lR~hEh~vEci~wap  287 (406)
T KOG0295|consen  242 RVNQDGTIIASCSNDQTLRVWVVATKQCK----------------------------------AELREHEHPVECIAWAP  287 (406)
T ss_pred             EecCCeeEEEecCCCceEEEEEeccchhh----------------------------------hhhhccccceEEEEecc
Confidence            99999999999999999999999885332                                  23333333222222111


Q ss_pred             ---cccc------CCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          410 ---SPVY------STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       410 ---~~~~------s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                         .+..      ...+.++.+++.|++|++||+.++.++.++.+|...|.+++|+|.|++|+++.+|+++++||+.+..
T Consensus       288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence               1110      0135799999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCC
Q 010883          481 EAAP  484 (498)
Q Consensus       481 ~~~~  484 (498)
                      ....
T Consensus       368 cmk~  371 (406)
T KOG0295|consen  368 CMKT  371 (406)
T ss_pred             eeec
Confidence            6543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=4e-34  Score=240.19  Aligned_cols=300  Identities=22%  Similarity=0.340  Sum_probs=238.8

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC------------C---eEEEEEeecCCCceeEEEEEeCCC
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------------G---WKIQKDILAKSLRWTVTDTSLSPD  187 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~------------~---~~~~~~~~~~~~~~~v~~~~~sp~  187 (498)
                      ....+..|++++.+.+|||||.++|+|+.|-.|+|.|++.            |   ..-..+.....|...|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            3456789999999999999999999999999999999871            1   011123345678889999999999


Q ss_pred             CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883          188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       188 ~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      ...|++++.|++|+++|+........++...              ...+|.++.|+|.|.+|++|.....+++||+++-+
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q--------------d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--------------DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhh--------------ccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence            9999999999999999997655443333221              12279999999999999999999999999999988


Q ss_pred             eeEEEe---ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-ccc-ccEEEEEEcCCCCEEEEEe
Q 010883          268 LSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHL-EGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       268 ~~~~~~---~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~-~~v~~l~~~~~~~~l~s~~  342 (498)
                      +...-.   +|.+.|+++.|+ +.+++.++++.||.|++||--    ..+++.++. .|. ..|.+..|..++++|++.+
T Consensus       250 cfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG  324 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG  324 (430)
T ss_pred             EeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence            754432   689999999998 889999999999999999975    667776664 344 3588999999999999999


Q ss_pred             CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      .|..+++|.+.+                                  ++.+..+.+....... .......|.....|++.
T Consensus       325 ~DS~vkLWEi~t----------------------------------~R~l~~YtGAg~tgrq-~~rtqAvFNhtEdyVl~  369 (430)
T KOG0640|consen  325 KDSTVKLWEIST----------------------------------GRMLKEYTGAGTTGRQ-KHRTQAVFNHTEDYVLF  369 (430)
T ss_pred             CcceeeeeeecC----------------------------------CceEEEEecCCcccch-hhhhhhhhcCccceEEc
Confidence            999999999988                                  4566666554221111 11122234445666666


Q ss_pred             Eec-CCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          423 GSH-DSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       423 g~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      -.+ .+.+.-||.+++..+..+. +|.+.+..+.-||.++-++||+.|-.+++|--
T Consensus       370 pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  370 PDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             cccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            544 5789999999988776664 89999999999999999999999999999964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=4.8e-34  Score=255.09  Aligned_cols=315  Identities=20%  Similarity=0.329  Sum_probs=245.9

Q ss_pred             ccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEeCCCCCeE
Q 010883          116 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHL  191 (498)
Q Consensus       116 ~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l  191 (498)
                      .+.+|......+.+|+..|.++++.|.|.+|++|+.|.+|++||+..-    .....+.....|  .|.+++|++.|..|
T Consensus       152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~i  229 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQI  229 (641)
T ss_pred             hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeE
Confidence            456677788889999999999999999999999999999999998742    112222233344  79999999999999


Q ss_pred             EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeE
Q 010883          192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSL  270 (498)
Q Consensus       192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~  270 (498)
                      ++.+.....+|+|-...+.....+.....    -......||...++|.+|+|+. ..+++++.||++++||+...+...
T Consensus       230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYI----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             EEEecCcceeEEccCCceeeeeeccchhh----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence            99999999999998776654443322211    1223345899999999999965 478999999999999998765433


Q ss_pred             EEe------ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc--cEEEEEEcCCCCEEEEEe
Q 010883          271 RIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNG  342 (498)
Q Consensus       271 ~~~------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~s~~  342 (498)
                      .+.      +..-+++.++|+ +++.+||+|..||.|.+|+.+... .......-.+|..  .|++|.|++||++|++-+
T Consensus       306 qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             eEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            332      233478899998 889999999999999999986332 2233445567877  899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      .|+++++||++...                                 +++..+.+-........|    +|||+.++|++
T Consensus       384 ~D~tLKvWDLrq~k---------------------------------kpL~~~tgL~t~~~~tdc----~FSPd~kli~T  426 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFK---------------------------------KPLNVRTGLPTPFPGTDC----CFSPDDKLILT  426 (641)
T ss_pred             CCCceeeeeccccc---------------------------------cchhhhcCCCccCCCCcc----ccCCCceEEEe
Confidence            99999999999865                                 333333333222222223    67779999999


Q ss_pred             Eec------CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          423 GSH------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       423 g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      |+.      .|.+++||..+.+.++.+......|..+.|+|.-+.|+.++.||.+++|=
T Consensus       427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            865      57899999999999999987788899999999999999999999999863

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-34  Score=231.48  Aligned_cols=285  Identities=21%  Similarity=0.301  Sum_probs=224.6

Q ss_pred             eEEEEEcCC-CCEEEEEE-------CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEE
Q 010883          134 AYVSQFSAD-GSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVD  204 (498)
Q Consensus       134 v~~~~~s~d-g~~la~~~-------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd  204 (498)
                      =+++.|||- .++||.+.       ..|++.|.++..+..+...... .....+.+++|++. .+.+++++.||.++|||
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d   89 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFD   89 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEec
Confidence            468899993 23444332       3688999999754444443322 33447999999995 46788899999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      +..... .+..              ...|...|.++.|++ +++.+++++.|++|++|+...++.+.++.+|..-|....
T Consensus        90 ~~~~s~-Pi~~--------------~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen   90 LTMPSK-PIHK--------------FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             cCCCCc-chhH--------------HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence            543221 1111              124777999999998 566788889999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      |+|..+++++++|.|+++++||++.   .++.+. +..|...|.++.|+. +.+.+++|+.|+.|++||+++..      
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r------  224 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRS---PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR------  224 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecC---CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc------
Confidence            9999999999999999999999982   344444 888999999999987 66789999999999999999864      


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVA  441 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~  441 (498)
                                                 .++..+.+|...  +.++.++|.   ...+||+++.|-+++|||...+ ..+.
T Consensus       225 ---------------------------~pl~eL~gh~~A--VRkvk~Sph---~~~lLaSasYDmT~riw~~~~~ds~~e  272 (311)
T KOG0277|consen  225 ---------------------------TPLFELNGHGLA--VRKVKFSPH---HASLLASASYDMTVRIWDPERQDSAIE  272 (311)
T ss_pred             ---------------------------ccceeecCCceE--EEEEecCcc---hhhHhhhccccceEEecccccchhhhh
Confidence                                       556677777743  334444443   4578999999999999998854 4566


Q ss_pred             EeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecC
Q 010883          442 ALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEF  476 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~  476 (498)
                      +...|..-|..+.|++..+ ++|++++|+.++||+.
T Consensus       273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccceEEeccccccccCceeeecccccceeeecc
Confidence            6778999999999999644 9999999999999984

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.1e-35  Score=255.49  Aligned_cols=244  Identities=24%  Similarity=0.403  Sum_probs=208.4

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      .+|..+.|.|+|+.|++|+..|.+.+|+..+-......                ..|..+|.++.|+++|.++++|+.+|
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil----------------QaHDs~Vr~m~ws~~g~wmiSgD~gG  160 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL----------------QAHDSPVRTMKWSHNGTWMISGDKGG  160 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh----------------hhhcccceeEEEccCCCEEEEcCCCc
Confidence            37999999999999999999999999997432221111                15788999999999999999999999


Q ss_pred             eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC
Q 010883          257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR  336 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  336 (498)
                      .|++|+.+-.........|...|++++|+ +++..|++++.||+|+|||..    ..+....+.+|.-.|.+++|+|...
T Consensus       161 ~iKyWqpnmnnVk~~~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~----~~kee~vL~GHgwdVksvdWHP~kg  235 (464)
T KOG0284|consen  161 MIKYWQPNMNNVKIIQAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFR----MPKEERVLRGHGWDVKSVDWHPTKG  235 (464)
T ss_pred             eEEecccchhhhHHhhHhhhhhhheeccC-CCCceeEEecCCCeEEEEecc----CCchhheeccCCCCcceeccCCccc
Confidence            99999987655433333455999999999 578889999999999999998    6677778899999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC
Q 010883          337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG  416 (498)
Q Consensus       337 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  416 (498)
                      +|++++.|..|++||.++                                  +.++.++.+|.  .++...    .|+++
T Consensus       236 LiasgskDnlVKlWDprS----------------------------------g~cl~tlh~HK--ntVl~~----~f~~n  275 (464)
T KOG0284|consen  236 LIASGSKDNLVKLWDPRS----------------------------------GSCLATLHGHK--NTVLAV----KFNPN  275 (464)
T ss_pred             eeEEccCCceeEeecCCC----------------------------------cchhhhhhhcc--ceEEEE----EEcCC
Confidence            999999999999999998                                  46666777776  334444    45568


Q ss_pred             CcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCC
Q 010883          417 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       417 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +++|++++.|..++++|+++.+.+.++++|...|+++.|+|-.. +|++|+.||.|..|.+...+.
T Consensus       276 ~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p  341 (464)
T KOG0284|consen  276 GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP  341 (464)
T ss_pred             CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc
Confidence            99999999999999999999999999999999999999999665 889999999999999984443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-34  Score=268.82  Aligned_cols=312  Identities=15%  Similarity=0.144  Sum_probs=214.6

Q ss_pred             cccc-CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC--CCCCeEEEEECCCeEE
Q 010883          125 WPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVH  201 (498)
Q Consensus       125 ~~l~-~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~s~d~~i~  201 (498)
                      +.+. +|.+.|+++.||+||+|||+||.|+.|+||.+...+...   .   +...-.++.+.  ..+..-.+.+..+.+.
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~---~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---V---AEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---c---cccccchhhhhhhhccccCcccccccccc
Confidence            3445 899999999999999999999999999999987642211   0   00011111111  1111111111111110


Q ss_pred             EEECCCCceecccc--ccc-cccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883          202 IVDVGSGTMESLAN--VTE-IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD  278 (498)
Q Consensus       202 iwd~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  278 (498)
                      =-.....+......  ++. ...-.+.+.....||.+.|.++.|+.++ +|++++.|.+|++|++...+++..+ .|...
T Consensus       334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~Hndf  411 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDF  411 (712)
T ss_pred             ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCe
Confidence            00000000000000  000 0000011222345899999999999766 7999999999999999999998877 89999


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      |+|++|+|.|.++|++|+-||.|+||++     ....+..+..-..-|++++|.|||++.+.|+.+|.+++|+....+..
T Consensus       412 VTcVaFnPvDDryFiSGSLD~KvRiWsI-----~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLDGKVRLWSI-----SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             eEEEEecccCCCcEeecccccceEEeec-----CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence            9999999999999999999999999999     45666666666789999999999999999999999999999875432


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG  437 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  437 (498)
                      ...                             .+..-... .....+..+.+.|.   +...|++.+.|..|+|||.+..
T Consensus       487 ~~~-----------------------------~I~~~~~Kk~~~~rITG~Q~~p~---~~~~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  487 SDF-----------------------------HIRLHNKKKKQGKRITGLQFFPG---DPDEVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             Eee-----------------------------eEeeccCccccCceeeeeEecCC---CCCeEEEecCCCceEEEeccch
Confidence            221                             11111111 11123445555543   3346888889999999999999


Q ss_pred             cEEEEeccCC--CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          438 EQVAALKYHT--SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       438 ~~~~~~~~h~--~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +++..|+++.  ..-....|+.||++|+++++|..|++|++.....
T Consensus       535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~  580 (712)
T KOG0283|consen  535 DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNS  580 (712)
T ss_pred             hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCcc
Confidence            9999998654  3345678999999999999999999999865543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.9e-34  Score=243.52  Aligned_cols=248  Identities=20%  Similarity=0.316  Sum_probs=220.7

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|.+.|.++++.|.+.++++|+.|++|+|||+.+++......                ||...|..+++++-..|++
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt----------------Ghi~~vr~vavS~rHpYlF  209 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT----------------GHIETVRGVAVSKRHPYLF  209 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------------chhheeeeeeecccCceEE
Confidence            456888999999999999999999999999999999998765543                6777899999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      +++.|+.|+.||++.++.++.+.+|-+.|.|++.+ |.-..|++|+.|.++++||+|    ....+..+.+|..+|..+.
T Consensus       210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             EecCCCeeEEEechhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEE
Confidence            99999999999999999999999999999999998 677899999999999999999    8899999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      +.|-...+++|+.|++|++||++.                                  ++...++..|.....      +
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~a----------------------------------gkt~~tlt~hkksvr------a  324 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRA----------------------------------GKTMITLTHHKKSVR------A  324 (460)
T ss_pred             eecCCCceEEecCCceEEEeeecc----------------------------------CceeEeeecccceee------E
Confidence            999888899999999999999998                                  455566666653222      2


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .+..|....+|+++.|. |+-|++..|..+..+.+|...|++++.+.|+ ++++|+++|.+.+||...+..
T Consensus       325 l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  325 LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence            24556778888888876 9999999999999999999999999998776 789999999999999987754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.5e-34  Score=229.21  Aligned_cols=250  Identities=23%  Similarity=0.348  Sum_probs=218.2

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ....++++|..+.|+-||+|.++++.|.+|++|+...+.++....                +|...|..++.+.|+..|+
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------ghG~EVlD~~~s~Dnskf~   75 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------GHGHEVLDAALSSDNSKFA   75 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec----------------CCCceeeeccccccccccc
Confidence            446778899999999999999999999999999999988776655                6777999999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      +|+.|..|.+||+++|+..+++.+|.+.|+.+.|+ .+...+++|+.|.++++||.+..  ..+|++.+......|.++.
T Consensus        76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si~  152 (307)
T KOG0316|consen   76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSID  152 (307)
T ss_pred             cCCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcccC--CCCccchhhhhcCceeEEE
Confidence            99999999999999999999999999999999998 88899999999999999999855  5678888888889999998


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      .+  +..|++|+.||+++.||++.+.                                  ....+-+|+        ..+
T Consensus       153 v~--~heIvaGS~DGtvRtydiR~G~----------------------------------l~sDy~g~p--------it~  188 (307)
T KOG0316|consen  153 VA--EHEIVAGSVDGTVRTYDIRKGT----------------------------------LSSDYFGHP--------ITS  188 (307)
T ss_pred             ec--ccEEEeeccCCcEEEEEeecce----------------------------------eehhhcCCc--------cee
Confidence            85  5689999999999999999843                                  333334443        123


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCC--eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP--VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      ..||+|++.+++++-|+++++.|-.+|++++.+++|...  -.+++++.....+++|+.||.|++||+.......
T Consensus       189 vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s  263 (307)
T KOG0316|consen  189 VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS  263 (307)
T ss_pred             EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence            467889999999999999999999999999999999754  3466788778899999999999999998776543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.7e-33  Score=238.00  Aligned_cols=293  Identities=20%  Similarity=0.272  Sum_probs=237.5

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC---CeEEEEECCCeE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIV  200 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~s~d~~i  200 (498)
                      +..--.|.+.|.++...  ++.+++|+.||.+++||.... ...   ...+|.++|.+++|.-..   ..+++++.|.++
T Consensus        98 pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen   98 PLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             ccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence            34445689999999988  789999999999999998753 333   446888899988885433   469999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------------  265 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~---------------  265 (498)
                      ++|.++.++........            ..||...|.++...++|..+++|+.|..|.+|+.++               
T Consensus       172 ~Lw~~~~~~~~~~~~~~------------~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk  239 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKV------------CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK  239 (423)
T ss_pred             EEEEecCchhhhhHHhH------------hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence            99999877643222111            127999999999999999999999999999999322               


Q ss_pred             ----------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883          266 ----------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG  335 (498)
Q Consensus       266 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  335 (498)
                                +.++..+.+|..+|.++.|++  ...+++++.|.+|+.||+.    .+..+..+.+ ...++++..+|..
T Consensus       240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDle----tg~~~~~~~~-~ksl~~i~~~~~~  312 (423)
T KOG0313|consen  240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLE----TGGLKSTLTT-NKSLNCISYSPLS  312 (423)
T ss_pred             hhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEee----cccceeeeec-CcceeEeeccccc
Confidence                      134566779999999999973  6789999999999999998    6666666653 4678999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883          336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST  415 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  415 (498)
                      ++|++|+.|..|++||.++....                               -....+.+|..  .+..+.++|.   
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs-------------------------------~v~~s~~gH~n--wVssvkwsp~---  356 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGS-------------------------------VVSQSLIGHKN--WVSSVKWSPT---  356 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCc-------------------------------eeEEeeecchh--hhhheecCCC---
Confidence            99999999999999999985421                               23456777774  4445556665   


Q ss_pred             CCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      +...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..|++||.|.+|+|+.-..
T Consensus       357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence            66788999999999999999987 999999999999999997 555899999999999987543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-31  Score=224.90  Aligned_cols=295  Identities=20%  Similarity=0.295  Sum_probs=237.9

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC--CCeEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHI  202 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~--d~~i~i  202 (498)
                      ..+....+.|.++.|+++|.+|++++.|.+++|||..++.....+.   .+...|..++|......++.++.  |.+|+.
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCCCCCceEE
Confidence            4455578899999999999999999999999999999997666543   34447888999888877777776  889999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      .++.+.+.++.+.                ||...|.+++.+|-+..+++++.|++|++||++..++...+...  .-..+
T Consensus        85 Lsl~dNkylRYF~----------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~  146 (311)
T KOG1446|consen   85 LSLHDNKYLRYFP----------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIA  146 (311)
T ss_pred             EEeecCceEEEcC----------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcce
Confidence            9999999887776                79999999999998899999999999999999988876665433  33456


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      +| +|.|-++|++.....|++||+|..+........+. +.....+.|.|+|||++|+.+...+.+++.|.-.       
T Consensus       147 Af-Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-------  218 (311)
T KOG1446|consen  147 AF-DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-------  218 (311)
T ss_pred             eE-CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-------
Confidence            77 48899999999888999999997643222222222 3456789999999999999999999999999876       


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                 +....++..+.......   ...+|+||++++++|+.||+|++|++++++.+.
T Consensus       219 ---------------------------G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  219 ---------------------------GTVKSTFSGYPNAGNLP---LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA  268 (311)
T ss_pred             ---------------------------CcEeeeEeeccCCCCcc---eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence                                       34455555554332221   233677899999999999999999999999999


Q ss_pred             Eecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          442 ALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       442 ~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      .+++ +.+++.++.|+|...+++|++  ..+.+|=....+
T Consensus       269 ~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~  306 (311)
T KOG1446|consen  269 VLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDA  306 (311)
T ss_pred             EecCCCCCCccccccCCceeeeeecC--ceEEEEeccccc
Confidence            9998 789999999999988888875  468888665443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.8e-32  Score=262.62  Aligned_cols=254  Identities=28%  Similarity=0.427  Sum_probs=213.6

Q ss_pred             CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      ..+...|.++.|+|+|+++++++.++.+++|+..+.+......              ..+|...|.+++|+|++++++++
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~--------------l~~h~~~v~~~~fs~d~~~l~s~  221 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE--------------LSGHTRGVSDVAFSPDGSYLLSG  221 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc--------------ccccccceeeeEECCCCcEEEEe
Confidence            3446689999999999999999999999999996655200111              12688899999999999999999


Q ss_pred             eCCCeEEEEEC-CCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883          253 SSDDCIYVYDL-EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS  331 (498)
Q Consensus       253 ~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~  331 (498)
                      +.|++|++||+ ..+..++.+.+|...|++++|+ +.++++++|+.|++|++||++    .++++..+.+|.+.|++++|
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~----~~~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVR----TGECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEecc----CCeEEEeeeccCCceEEEEE
Confidence            99999999999 5558889999999999999998 566999999999999999998    78999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883          332 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP  411 (498)
Q Consensus       332 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (498)
                      ++++++|++++.|+.|++||+.+....                                .+..+.++....    ...+.
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~--------------------------------~~~~~~~~~~~~----~~~~~  340 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKL--------------------------------CLKLLSGAENSA----PVTSV  340 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCcee--------------------------------eeecccCCCCCC----ceeEE
Confidence            999999999999999999999984310                                233344443221    22333


Q ss_pred             ccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCC---eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP---VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .|+|++.++++++.|+.+++||+..+..+..+.+|...   +.+...++.+.++++++.|+.|++|++.+...
T Consensus       341 ~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~  413 (456)
T KOG0266|consen  341 QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI  413 (456)
T ss_pred             EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence            67779999999999999999999999999999988774   44555678899999999999999999997543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-32  Score=260.72  Aligned_cols=294  Identities=18%  Similarity=0.265  Sum_probs=247.6

Q ss_pred             ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883          127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      +..-+++|..++|+|...+++++-..|.|++||..-+..+.+   ...|.++|..++|+|++.++++|+.|-.|+||+..
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            344578899999999999999999999999999988755553   45788999999999999999999999999999999


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  286 (498)
                      +.++.....                ||-+-|..+.|++.-.+|++++.|.+|+||+..+++++..+.+|.-.|.|..|+ 
T Consensus        82 ~rrclftL~----------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-  144 (1202)
T KOG0292|consen   82 TRRCLFTLL----------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-  144 (1202)
T ss_pred             cceehhhhc----------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-
Confidence            888754433                788899999999999999999999999999999999999999999999999998 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccC-------------------------CCceeEEeccccccEEEEEEcCCCCEEEEE
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNV-------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  341 (498)
                      |...+++++|-|.+|+|||+.....                         .......+.+|..+|+.++|+|.-..|++|
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG  224 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG  224 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence            7788999999999999999852211                         111235678999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883          342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  421 (498)
                      +.|..|++|.+...+                                .-.+.+..+|..  .+..+.    |.|...+++
T Consensus       225 ~DDRqVKlWrmnetK--------------------------------aWEvDtcrgH~n--nVssvl----fhp~q~lIl  266 (1202)
T KOG0292|consen  225 ADDRQVKLWRMNETK--------------------------------AWEVDTCRGHYN--NVSSVL----FHPHQDLIL  266 (1202)
T ss_pred             CCcceeeEEEecccc--------------------------------ceeehhhhcccC--CcceEE----ecCccceeE
Confidence            999999999987522                                123444556653  333444    445789999


Q ss_pred             EEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      +.++|++|+|||+...+.+.+++...+.-+.++-+|..++++.| .|+-+.+|.+...
T Consensus       267 SnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE  323 (1202)
T KOG0292|consen  267 SNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE  323 (1202)
T ss_pred             ecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence            99999999999999999999998778899999999999877766 4566677877643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-33  Score=254.00  Aligned_cols=249  Identities=22%  Similarity=0.289  Sum_probs=220.8

Q ss_pred             CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      +...|.++.|+|...+++++-.+|.|.|||.++......+.+.+.                ||.+..|.+..+++++|+.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~----------------PvRa~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV----------------PVRAAKFIARKNWIVTGSD   75 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc----------------chhhheeeeccceEEEecC
Confidence            555899999999999999999999999999999887766665432                7999999999999999999


Q ss_pred             CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-
Q 010883          255 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-  333 (498)
Q Consensus       255 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-  333 (498)
                      |..|+||+.++++.+..+.+|.+.|++++.+ |..-+++++|+|-+|++||..   ....+.+++.+|...|.+++|+| 
T Consensus        76 D~~IrVfnynt~ekV~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we---~~wa~~qtfeGH~HyVMqv~fnPk  151 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWE---NEWACEQTFEGHEHYVMQVAFNPK  151 (794)
T ss_pred             CceEEEEecccceeeEEeeccccceeeeeec-CCCCeEEecCCccEEEEeecc---CceeeeeEEcCcceEEEEEEecCC
Confidence            9999999999999999999999999999998 666789999999999999986   35678889999999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      |.+.+++++-|++|++|.+..                                  ..+..++++|......+......  
T Consensus       152 D~ntFaS~sLDrTVKVWslgs----------------------------------~~~nfTl~gHekGVN~Vdyy~~g--  195 (794)
T KOG0276|consen  152 DPNTFASASLDRTVKVWSLGS----------------------------------PHPNFTLEGHEKGVNCVDYYTGG--  195 (794)
T ss_pred             CccceeeeeccccEEEEEcCC----------------------------------CCCceeeeccccCcceEEeccCC--
Confidence            568999999999999999987                                  35567788888555554433222  


Q ss_pred             CCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                        |..+|++|+.|..|+|||..+..++.++.+|...|..+.|+|.-++++||+.||+|+||+-.+-..
T Consensus       196 --dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  196 --DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             --CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence              567999999999999999999999999999999999999999999999999999999999776543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-32  Score=241.24  Aligned_cols=302  Identities=21%  Similarity=0.248  Sum_probs=235.7

Q ss_pred             ccCCCCCccccCCCCceEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC
Q 010883          118 YLPVNGPWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM  196 (498)
Q Consensus       118 ~~~~~~~~~l~~h~~~v~~~~~s~dg~~-la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~  196 (498)
                      +|.......+....+.|.+++|||...+ +|+.+ .-.+.||+..+.......   ......|.++.|-.||++|++|..
T Consensus        13 ~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~---srFk~~v~s~~fR~DG~LlaaGD~   88 (487)
T KOG0310|consen   13 YWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTF---SRFKDVVYSVDFRSDGRLLAAGDE   88 (487)
T ss_pred             hhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhH---HhhccceeEEEeecCCeEEEccCC
Confidence            3344444455556789999999997643 44443 356999998775333322   233447999999999999999999


Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEecc
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH  275 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  275 (498)
                      .|.|+|+|..+........                +|+.++..+.|+| ++..|++|+.|+.+++||+.+......+.+|
T Consensus        89 sG~V~vfD~k~r~iLR~~~----------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h  152 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVILRQLY----------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH  152 (487)
T ss_pred             cCcEEEeccccHHHHHHHh----------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence            9999999966533322222                5778999999999 5567888899999999999999887788999


Q ss_pred             CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          276 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      ++.|.|.+|+|.+++++++|+.||.|++||++..   ...+..+ .|..+|..+.+-|.|..|++++. ..+++||+.++
T Consensus       153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~---~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G  227 (487)
T KOG0310|consen  153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL---TSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG  227 (487)
T ss_pred             cceeEeeccccCCCeEEEecCCCceEEEEEeccC---CceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC
Confidence            9999999999888999999999999999999822   2445555 48999999999999999998875 47999999864


Q ss_pred             CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                      .                                 +.+..+..|....+..      .+..++..|++|+-|+.|++||+.
T Consensus       228 ~---------------------------------qll~~~~~H~KtVTcL------~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  228 G---------------------------------QLLTSMFNHNKTVTCL------RLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             c---------------------------------eehhhhhcccceEEEE------EeecCCceEeecccccceEEEEcc
Confidence            3                                 3333334354333332      344478999999999999999999


Q ss_pred             CCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       436 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      +.+.+..+. ..++|.+++.+|+++.++.|-.||.+.+=+....+++.+
T Consensus       269 ~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~  316 (487)
T KOG0310|consen  269 NYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSK  316 (487)
T ss_pred             ceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCc
Confidence            999998887 678999999999999999999999998886655554443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-32  Score=252.68  Aligned_cols=287  Identities=21%  Similarity=0.288  Sum_probs=244.2

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..+.+|.+.|.+++||.|...+++|+ .+.|+||+..+.+++......     .+.+..|.|.++++++|...|.+.++|
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFD  440 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEE
Confidence            46789999999999999998888875 568999999998777764322     688999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Cee--eE-----EE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKL--SL-----RI  272 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-----~~~--~~-----~~  272 (498)
                      +.+........                .|.+.|.+++.+||++.+++|+.|.+|++||..-     +..  +.     +.
T Consensus       441 laS~~l~Eti~----------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt  504 (888)
T KOG0306|consen  441 LASASLVETIR----------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT  504 (888)
T ss_pred             eehhhhhhhhh----------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence            99877654443                4778999999999999999999999999999742     111  11     11


Q ss_pred             eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      ..-...|.|+.++ |++.+|+++--|.+|+||-+.    +-+....+.+|.-||.++..+||++.++||+.|.+|++|-+
T Consensus       505 Lel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL  579 (888)
T KOG0306|consen  505 LELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL  579 (888)
T ss_pred             EeccccEEEEEEc-CCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence            2446789999998 899999999999999999998    77888899999999999999999999999999999999998


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY  432 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  432 (498)
                      .-+                                  .+-+.+-+|..  .++..    .|-|....+.+++.|+.|+-|
T Consensus       580 dFG----------------------------------DCHKS~fAHdD--Svm~V----~F~P~~~~FFt~gKD~kvKqW  619 (888)
T KOG0306|consen  580 DFG----------------------------------DCHKSFFAHDD--SVMSV----QFLPKTHLFFTCGKDGKVKQW  619 (888)
T ss_pred             ccc----------------------------------hhhhhhhcccC--ceeEE----EEcccceeEEEecCcceEEee
Confidence            873                                  44444555553  23333    344578899999999999999


Q ss_pred             ECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          433 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       433 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      |-...+.+..+.+|...|++++.+|+|.+++|++.|..|++|+-..
T Consensus       620 Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  620 DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             chhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999999999999999999999999999999999999999999765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.7e-32  Score=264.40  Aligned_cols=321  Identities=19%  Similarity=0.177  Sum_probs=236.2

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCC--------e-EEEEEeecCCCceeEEEEEeCCCCCeEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERG--------W-KIQKDILAKSLRWTVTDTSLSPDQRHLVY  193 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~--~dg~i~vw~~~~~--------~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  193 (498)
                      .-+..+...|++++.+|||..+|||+  .|+.++||+.+.-        . ..........|.+.|+|+.|+|||++||+
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs   86 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS   86 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence            34556677799999999999999999  8999999997531        1 11223345678899999999999999999


Q ss_pred             EECCCeEEEEECCCCceeccccccccccCc--cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883          194 ASMSPIVHIVDVGSGTMESLANVTEIHDGL--DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR  271 (498)
Q Consensus       194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~  271 (498)
                      |++|+.|.||..........+.........  --......+|+..|.+++|+|++.+|++++.|++|.+||..+.+.+..
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence            999999999998741100111000000000  001112347999999999999999999999999999999999999999


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc------ccEEEEEEcCCCCEEEEEeC--
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYLISNGK--  343 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~s~~~--  343 (498)
                      +.+|.+.|..+.| +|-|++|++-+.|++|++|++.    .....+.+..+.      ..+..+.|+|||.+|++...  
T Consensus       167 l~~H~s~VKGvs~-DP~Gky~ASqsdDrtikvwrt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  167 LRGHQSLVKGVSW-DPIGKYFASQSDDRTLKVWRTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             eecccccccceEE-CCccCeeeeecCCceEEEEEcc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            9999999999999 5899999999999999999976    444444444432      34788999999999997643  


Q ss_pred             --CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc-CC-----
Q 010883          344 --DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY-ST-----  415 (498)
Q Consensus       344 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~-----  415 (498)
                        -..+.|.+-.+                                  ...-..+-+|...  +....|+|.+ ..     
T Consensus       242 ~~~~~~~IieR~t----------------------------------Wk~~~~LvGH~~p--~evvrFnP~lfe~~~~ng  285 (942)
T KOG0973|consen  242 GGKSTIAIIERGT----------------------------------WKVDKDLVGHSAP--VEVVRFNPKLFERNNKNG  285 (942)
T ss_pred             CCcceeEEEecCC----------------------------------ceeeeeeecCCCc--eEEEEeChHHhccccccC
Confidence              22455555433                                  1223344555542  2233344431 11     


Q ss_pred             ---CC----cEEEEEecCCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCcc
Q 010883          416 ---GQ----KYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL  486 (498)
Q Consensus       416 ---~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~  486 (498)
                         ..    ..+|+|+.|++|-||.....+++.... -....|.+++|+|||..|+.+|.||+|.+..+...+--.+..
T Consensus       286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls  364 (942)
T KOG0973|consen  286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALS  364 (942)
T ss_pred             CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccC
Confidence               11    168899999999999998888776553 345789999999999999999999999999998776544433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.3e-32  Score=226.59  Aligned_cols=252  Identities=24%  Similarity=0.344  Sum_probs=214.1

Q ss_pred             EEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC
Q 010883          168 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR  247 (498)
Q Consensus       168 ~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~  247 (498)
                      ......+|.+.|..+.|+|+|.+||+|+.|..|.+|++.... .....+              .+|++.|..+.|.+|++
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~l--------------kgHsgAVM~l~~~~d~s  103 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVL--------------KGHSGAVMELHGMRDGS  103 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeee--------------ccccceeEeeeeccCCC
Confidence            344567899999999999999999999999999999975432 222221              27999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883          248 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT  327 (498)
Q Consensus       248 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  327 (498)
                      .|++++.|.+|+.||.++++.++++..|..-|+.+.-+..+..++.+++.||++++||+|    +...+.++. ..-.++
T Consensus       104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R----~k~~~~t~~-~kyqlt  178 (338)
T KOG0265|consen  104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR----KKEAIKTFE-NKYQLT  178 (338)
T ss_pred             EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec----ccchhhccc-cceeEE
Confidence            999999999999999999999999999999999998776677899999999999999998    666666654 356789


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883          328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC  407 (498)
Q Consensus       328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (498)
                      ++.|..++..+++|+-|+.|++||++.                                  +....++.+|....+.+  
T Consensus       179 Av~f~d~s~qv~sggIdn~ikvWd~r~----------------------------------~d~~~~lsGh~DtIt~l--  222 (338)
T KOG0265|consen  179 AVGFKDTSDQVISGGIDNDIKVWDLRK----------------------------------NDGLYTLSGHADTITGL--  222 (338)
T ss_pred             EEEecccccceeeccccCceeeecccc----------------------------------CcceEEeecccCceeeE--
Confidence            999999999999999999999999988                                  46677888888544433  


Q ss_pred             EeccccCCCCcEEEEEecCCeEEEEECCC----CcEEEEeccCC----CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVS----GEQVAALKYHT----SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~----~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                          ..+++|.++.+-+.|.++++||++.    .+++..+.+|.    .....++|+|+++.+.+++.|..+++||....
T Consensus       223 ----sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  223 ----SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             ----EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence                5677999999999999999999875    34577777654    34567899999999999999999999998764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-31  Score=250.30  Aligned_cols=330  Identities=18%  Similarity=0.193  Sum_probs=257.5

Q ss_pred             cccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883          115 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA  194 (498)
Q Consensus       115 ~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  194 (498)
                      +...........+.+|+.+|+++.|+..|.+||+|+.|+.|.|||+-...   -.....+|...|+..-|..+.++|++.
T Consensus        91 if~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~---Gl~rL~GHkd~iT~~~F~~~~~~lvS~  167 (888)
T KOG0306|consen   91 IFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE---GLFRLRGHKDSITQALFLNGDSFLVSV  167 (888)
T ss_pred             eeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce---eeEEeecchHHHhHHhccCCCeEEEEe
Confidence            33333345667889999999999999999999999999999999997652   234557889999999999989999999


Q ss_pred             ECCCeEEEEECCCCceecccccc--------------------------cc---cc-----------------------C
Q 010883          195 SMSPIVHIVDVGSGTMESLANVT--------------------------EI---HD-----------------------G  222 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~--------------------------~~---~~-----------------------~  222 (498)
                      +.|+.|++||+++..+.......                          +.   .+                       .
T Consensus       168 sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~  247 (888)
T KOG0306|consen  168 SKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE  247 (888)
T ss_pred             ccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence            99999999999876542111000                          00   00                       0


Q ss_pred             ccccc---------------------------------------------------------------------------
Q 010883          223 LDFSA---------------------------------------------------------------------------  227 (498)
Q Consensus       223 ~~~~~---------------------------------------------------------------------------  227 (498)
                      +.+..                                                                           
T Consensus       248 i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~d  327 (888)
T KOG0306|consen  248 INLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFD  327 (888)
T ss_pred             eEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEE
Confidence            00000                                                                           


Q ss_pred             ---------------------------------------cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 010883          228 ---------------------------------------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL  268 (498)
Q Consensus       228 ---------------------------------------~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~  268 (498)
                                                             ....||...|.+++++.+...+++|+ .++|.+|+..+.++
T Consensus       328 v~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kc  406 (888)
T KOG0306|consen  328 VTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKC  406 (888)
T ss_pred             EEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcce
Confidence                                                   00026888899999998887666664 56899999999999


Q ss_pred             eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883          269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK  348 (498)
Q Consensus       269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~  348 (498)
                      ++++...  .+.+..|. |.++++++|...|.+.+||+.    ....+....+|.+.|+.++.+||+..+++|+.|.+|+
T Consensus       407 iRTi~~~--y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdla----S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk  479 (888)
T KOG0306|consen  407 IRTITCG--YILASKFV-PGDRYIVLGTKNGELQVFDLA----SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK  479 (888)
T ss_pred             eEEeccc--cEEEEEec-CCCceEEEeccCCceEEEEee----hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE
Confidence            9998654  88999998 788999999999999999998    7778888889999999999999999999999999999


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC  428 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  428 (498)
                      +||+......+..                           ...+..+. |.....+..-..+..+||||++|+++=-|++
T Consensus       480 fWdf~l~~~~~gt---------------------------~~k~lsl~-~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT  531 (888)
T KOG0306|consen  480 FWDFKLVVSVPGT---------------------------QKKVLSLK-HTRTLELEDDVLCVSVSPDGKLLAVSLLDNT  531 (888)
T ss_pred             EEeEEEEeccCcc---------------------------cceeeeec-cceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence            9998753321100                           01111111 1111222223345578889999999999999


Q ss_pred             EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          429 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       429 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      |+||-+.+.+....+.||.-||.|+..|||+++++|||.|..|+||-++-++...
T Consensus       532 VkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK  586 (888)
T KOG0306|consen  532 VKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK  586 (888)
T ss_pred             EEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence            9999999999999999999999999999999999999999999999998776543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-32  Score=229.70  Aligned_cols=307  Identities=20%  Similarity=0.294  Sum_probs=245.2

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+.+|++.|+.++.......+.+++.|.+.+||.+++|.++..   ..+|.+.|+++.|++.+.++++++.|++.+||
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHH
Confidence            346789999999999998889999999999999999999977664   46899999999999999999999999999999


Q ss_pred             ECC------CCceecccc----c---ccccc-----------CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 010883          204 DVG------SGTMESLAN----V---TEIHD-----------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY  259 (498)
Q Consensus       204 d~~------~~~~~~~~~----~---~~~~~-----------~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~  259 (498)
                      ...      ......-..    .   .+...           .+..+.....+|...|.+..|...|+.+++++.|.+..
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            721      110000000    0   00000           01111222357899999999999999999999999999


Q ss_pred             EEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE
Q 010883          260 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI  339 (498)
Q Consensus       260 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  339 (498)
                      +||+++++++..+.+|....+.++-+ |..+++++.+.|-+.++||.+   ..-..+..|++|.+.|+++.|..+. .++
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd-~vV  372 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDD-RVV  372 (481)
T ss_pred             eeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCC-cee
Confidence            99999999999999999999999886 788999999999999999998   3456778999999999999998764 589


Q ss_pred             EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883          340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY  419 (498)
Q Consensus       340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  419 (498)
                      +|+.|.+|++||++++.                                 .++.++...+....+       +.+..+.+
T Consensus       373 SgSDDrTvKvWdLrNMR---------------------------------splATIRtdS~~NRv-------avs~g~~i  412 (481)
T KOG0300|consen  373 SGSDDRTVKVWDLRNMR---------------------------------SPLATIRTDSPANRV-------AVSKGHPI  412 (481)
T ss_pred             ecCCCceEEEeeecccc---------------------------------CcceeeecCCcccee-------EeecCCce
Confidence            99999999999999975                                 344455444432222       33446778


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEe-----ccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCCC
Q 010883          420 IYTGSHDSCVYVYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       420 l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~~  479 (498)
                      |+.--.+..|++||+.. ..+..+     ++|..-|+|++|..+-+  -|++|+.|..+.=|+++..
T Consensus       413 IAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  413 IAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             EEeccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            88888899999999954 444443     48999999999987665  6899999999999998764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.2e-31  Score=254.89  Aligned_cols=282  Identities=24%  Similarity=0.343  Sum_probs=244.6

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      .+...+.|..|.  ..++++++.|++|++|+..++..+..  ...+|.+.|.++++..-+.+|++|+.|.++++||..++
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence            467889999998  56799999999999999999855443  36789999999999887899999999999999999999


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  288 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  288 (498)
                      ++...+.                +|...|.++...  ...+++|+.|.+|++|++.++..+..+.+|.++|+++...   
T Consensus       282 ~C~~~l~----------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---  340 (537)
T KOG0274|consen  282 ECTHSLQ----------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---  340 (537)
T ss_pred             cEEEEec----------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---
Confidence            9877765                677788888775  4468889999999999999999999998899999999985   


Q ss_pred             CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883          289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY  368 (498)
Q Consensus       289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  368 (498)
                      +.++++|+.|++|++||+.    ..+++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++..            
T Consensus       341 ~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------------  403 (537)
T KOG0274|consen  341 EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------------  403 (537)
T ss_pred             CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh------------
Confidence            7799999999999999998    89999999999999999988665 899999999999999999831            


Q ss_pred             cccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc-CC
Q 010883          369 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-HT  447 (498)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~  447 (498)
                                           +++.++.+|......        ....+++|++++.|+.|++||..+++++..+.+ |.
T Consensus       404 ---------------------~c~~tl~~h~~~v~~--------l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~  454 (537)
T KOG0274|consen  404 ---------------------KCIHTLQGHTSLVSS--------LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHV  454 (537)
T ss_pred             ---------------------hhhhhhcCCcccccc--------cccccceeEeccccccEEEeecccCceeeeeccCCc
Confidence                                 466677777654422        122678999999999999999999999999998 67


Q ss_pred             CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      +.|..+++.  ...+++++.||.+++||+..+....
T Consensus       455 ~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  455 GGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             ccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence            899999886  5678999999999999999887654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-30  Score=215.08  Aligned_cols=253  Identities=19%  Similarity=0.241  Sum_probs=210.3

Q ss_pred             EeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC
Q 010883          169 DILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR  247 (498)
Q Consensus       169 ~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~  247 (498)
                      .....+|.+.+..++|+|- |..||+++.|..|++|+...+.......            ..+.+|+..|.+++|+|.|+
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~------------vld~~hkrsVRsvAwsp~g~   74 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT------------VLDDGHKRSVRSVAWSPHGR   74 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE------------eccccchheeeeeeecCCCc
Confidence            3445678889999999998 8999999999999999988533211111            11236888999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCC--eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc
Q 010883          248 ELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG  325 (498)
Q Consensus       248 ~l~~g~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  325 (498)
                      +|++++.|.++.||.-..+  +++..+.+|...|.|++|+ .+|++||+++.|..|-||.+...+ ...+...++.|...
T Consensus        75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqD  152 (312)
T KOG0645|consen   75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQD  152 (312)
T ss_pred             EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeecccccc
Confidence            9999999999999987654  5678899999999999998 899999999999999999987332 56788899999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883          326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI  405 (498)
Q Consensus       326 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (498)
                      |..+.|+|...+|++++.|.+|++|+-....                               .-..+.++.+|..     
T Consensus       153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------------------------------dW~c~~tl~g~~~-----  196 (312)
T KOG0645|consen  153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------------------------------DWECVQTLDGHEN-----  196 (312)
T ss_pred             ccEEEEcCCcceeEEeccCCeEEEEeecCCC-------------------------------CeeEEEEecCccc-----
Confidence            9999999999999999999999999876311                               1367888888874     


Q ss_pred             EEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe-ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          406 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       406 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                       ..|+.+|++.|..|++++.|++|+||...+     .+ ..|..++..++|.  ...|+|++.|+.|+++.-...
T Consensus       197 -TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~  263 (312)
T KOG0645|consen  197 -TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS  263 (312)
T ss_pred             -eEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence             345667888999999999999999998652     22 2478899999998  458999999999999987744

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-32  Score=255.43  Aligned_cols=285  Identities=21%  Similarity=0.313  Sum_probs=227.5

Q ss_pred             ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883          176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  255 (498)
Q Consensus       176 ~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d  255 (498)
                      ...|..++|+|...+++++-..|.|++||.+-+.++..+.                .|.++|..++|+|++.++++|+.|
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd----------------eHdGpVRgv~FH~~qplFVSGGDD   72 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD----------------EHDGPVRGVDFHPTQPLFVSGGDD   72 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh----------------ccCCccceeeecCCCCeEEecCCc
Confidence            3478899999999999999999999999999887654433                588899999999999999999999


Q ss_pred             CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883          256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG  335 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  335 (498)
                      -.|+||+..+.+++.++.+|.+.|..+.|+ +.--+++++|+|.+|+||+..    +.+++..+.+|...|.|..|+|..
T Consensus        73 ykIkVWnYk~rrclftL~GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwq----sr~~iavltGHnHYVMcAqFhptE  147 (1202)
T KOG0292|consen   73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQ----SRKCIAVLTGHNHYVMCAQFHPTE  147 (1202)
T ss_pred             cEEEEEecccceehhhhccccceeEEeecc-CCCceEEEccCCCeEEEEecc----CCceEEEEecCceEEEeeccCCcc
Confidence            999999999999999999999999999997 777899999999999999998    899999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC-ceEEEEccCceeEEEEEEEeccccC
Q 010883          336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      ..+++++-|.+|++||+.........+.+.   +..++   ..+....+.-..+ -....+.+|..  .+.-+    +|.
T Consensus       148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~---e~~~~---~~~~~~dLfg~~DaVVK~VLEGHDR--GVNwa----Afh  215 (1202)
T KOG0292|consen  148 DLIVSASLDQTVRVWDISGLRKKNKAPGSL---EDQMR---GQQGNSDLFGQTDAVVKHVLEGHDR--GVNWA----AFH  215 (1202)
T ss_pred             ceEEEecccceEEEEeecchhccCCCCCCc---hhhhh---ccccchhhcCCcCeeeeeeeccccc--ccceE----Eec
Confidence            999999999999999998754333221110   00111   1111111221112 22345677773  33333    455


Q ss_pred             CCCcEEEEEecCCeEEEEECCCCc--EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccchhcee
Q 010883          415 TGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIR  492 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~  492 (498)
                      |.-.++++|+.|..|++|.+..-+  .+-+..+|.+.|.++-|+|...+++|.|.|++|+|||+....    ..+..|..
T Consensus       216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----~v~tfrre  291 (1202)
T KOG0292|consen  216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----SVQTFRRE  291 (1202)
T ss_pred             CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc----ceeeeecc
Confidence            567899999999999999986554  355677999999999999999999999999999999997643    33444555


Q ss_pred             eceec
Q 010883          493 RRQFY  497 (498)
Q Consensus       493 ~~~f~  497 (498)
                      ..+||
T Consensus       292 ndRFW  296 (1202)
T KOG0292|consen  292 NDRFW  296 (1202)
T ss_pred             CCeEE
Confidence            55665

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-29  Score=203.89  Aligned_cols=290  Identities=22%  Similarity=0.296  Sum_probs=228.9

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCC------C------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER------G------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  198 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~------~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~  198 (498)
                      ...|.+++|+|.|.+.|+|+...+++|.....      +      -+.......+.|.+.|.|.+|+|+|.+|++|+.|.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            56799999999999999999999998875432      1      01112234567899999999999999999999999


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCeeeEEEe
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRIL  273 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----g~~l~~g~-~dg~i~vwd~~~~~~~~~~~  273 (498)
                      +|++...+...+...-.-      ++|     .-|.+.|..++|..+    |.+|++++ .|-.|++-|..+++....+.
T Consensus       112 ~ik~l~fn~dt~~~~g~d------le~-----nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHD------LEF-----NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             eEEEEecccccccccCcc------eee-----eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            999988765443222111      111     137779999999753    45677655 46778999999999999999


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc-------ccccEEEEEEcCCCCEEEEEeCCCc
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQA  346 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~dg~  346 (498)
                      +|.+.|.++--  -++-++++|+.|.+|++||++    ....+.++..       ....|.++++.|.|++|++|..|..
T Consensus       181 ghtghilalys--wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss  254 (350)
T KOG0641|consen  181 GHTGHILALYS--WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS  254 (350)
T ss_pred             CCcccEEEEEE--ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence            99999988742  458899999999999999998    4455544432       2356999999999999999999999


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD  426 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  426 (498)
                      ..+||++.                                  ++.++.|..|......      ..|||...|+++++.|
T Consensus       255 c~lydirg----------------------------------~r~iq~f~phsadir~------vrfsp~a~yllt~syd  294 (350)
T KOG0641|consen  255 CMLYDIRG----------------------------------GRMIQRFHPHSADIRC------VRFSPGAHYLLTCSYD  294 (350)
T ss_pred             eEEEEeeC----------------------------------CceeeeeCCCccceeE------EEeCCCceEEEEeccc
Confidence            99999998                                  5778888888744333      3677899999999999


Q ss_pred             CeEEEEECCCC----cEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          427 SCVYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       427 g~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ..|++-|+...    -++.....|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus       295 ~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  295 MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999998532    1234445699999999999999999999999999999875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=100.00  E-value=4e-31  Score=220.68  Aligned_cols=301  Identities=16%  Similarity=0.236  Sum_probs=235.0

Q ss_pred             CccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCe------------EEEEEeecCCCceeEEEEEeCC-CCC
Q 010883          124 PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSP-DQR  189 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~~~v~~~~~sp-~~~  189 (498)
                      ......|.+.|+++.+.+ .|+|+++|+.||.|.|||+++..            .+.......+|+..|.++.|-| |.-
T Consensus        36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            345577999999999998 58999999999999999997642            1112233467889999999999 566


Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      .+.+++.|.+++|||..+-+....++++.                 .|.+-+++|-   ..++|+|..+-.|++.|+.+|
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~me~-----------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG  178 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKMEG-----------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG  178 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeecCc-----------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence            77788999999999999988766666554                 6888888883   457888889999999999999


Q ss_pred             eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc-----------CCCceeEEeccccccEEEEEEcCCC
Q 010883          267 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-----------VKGKPAGVLMGHLEGITFIDSRGDG  335 (498)
Q Consensus       267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~v~~l~~~~~~  335 (498)
                      .....+.+|.+.|.++.|+|...-.|++|+.||.|++||++...           .....+..-..|.+.|..++|+.++
T Consensus       179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~  258 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA  258 (397)
T ss_pred             cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence            99999999999999999998888889999999999999998321           0111222345688899999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883          336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST  415 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  415 (498)
                      .++++++.|..+++|+..++........                          ..+..-..+..  -...   +    .
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g--------------------------~~~~n~~~~~~--~~~~---~----~  303 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRNTLREFG--------------------------PIIHNQTTSFA--VHIQ---S----M  303 (397)
T ss_pred             hhhhhccCccceEEeecccCcccccccc--------------------------cccccccccce--EEEe---e----c
Confidence            9999999999999999988654332110                          11111111110  0011   1    1


Q ss_pred             CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      +...++.--.++.+.++++-++..+..+..|-..|.+.++-|+-+...++..|+.|..|-.
T Consensus       304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            2333444445688999999999999999999999999999999999999999999999987

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-32  Score=234.98  Aligned_cols=297  Identities=12%  Similarity=0.133  Sum_probs=237.1

Q ss_pred             CCccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      -...|.+|.+.|+|++=+|.. ..+|+|+.||.|+|||+....++.   ....|.+.|..|++..  ..+++++.|.+|+
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--TSFFTVGDDKTVK  132 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--cceEEecCCccee
Confidence            344679999999999999988 889999999999999999864444   4467888999999976  7788999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      .|.++.. ....+.                 ..+.+..+.-+..+..+++++.+  |.|||.....++..+.-....|.+
T Consensus       133 ~wk~~~~-p~~til-----------------g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~s  192 (433)
T KOG0268|consen  133 QWKIDGP-PLHTIL-----------------GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISS  192 (433)
T ss_pred             eeeccCC-cceeee-----------------ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeE
Confidence            9998763 111111                 11245566666667778888754  999999999999999888889999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      +.|+|....+|+++..|+.|.+||++    ...++..+. ..-.-+.|+|+|.+-.+++++.|..++.||++...     
T Consensus       193 vkfNpvETsILas~~sDrsIvLyD~R----~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-----  262 (433)
T KOG0268|consen  193 VKFNPVETSILASCASDRSIVLYDLR----QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-----  262 (433)
T ss_pred             EecCCCcchheeeeccCCceEEEecc----cCCccceee-eeccccceecCccccceeeccccccceehhhhhhc-----
Confidence            99998888999999999999999999    666655443 23445789999988889999999999999999864     


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                  .++..+.+|.      ......+|||.|+-+++|+.|.+|+||.+..+....
T Consensus       263 ----------------------------~p~~v~~dhv------sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd  308 (433)
T KOG0268|consen  263 ----------------------------RPLNVHKDHV------SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD  308 (433)
T ss_pred             ----------------------------ccchhhcccc------eeEEEeccCCCcchhccccccceEEEeecCCCcchh
Confidence                                        5556666665      233455788899999999999999999998776544


Q ss_pred             Eec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccch
Q 010883          442 ALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNK  488 (498)
Q Consensus       442 ~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~  488 (498)
                      .+. .-...|.++.||-|.+++++||+|+.|++|.....+...+...+
T Consensus       309 iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~r  356 (433)
T KOG0268|consen  309 IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPR  356 (433)
T ss_pred             hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChh
Confidence            432 12357999999999999999999999999998877666554443

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.5e-30  Score=246.30  Aligned_cols=278  Identities=18%  Similarity=0.206  Sum_probs=211.4

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----------EeecCCCceeEEEEEeCC-CCCeEEEEECCC
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----------DILAKSLRWTVTDTSLSP-DQRHLVYASMSP  198 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~----------~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~  198 (498)
                      |-..|.....++|+..+++++.+.....|+...+..+..          .....+|.+.|++++|+| ++++|++++.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            455667778888877778887787778888665432211          112457889999999999 889999999999


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTS  277 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  277 (498)
                      +|++||+.++.......         .......+|...|.+++|+|++ .+|++|+.|+.|+|||+.+++.+..+..|..
T Consensus        99 tIkIWdi~~~~~~~~~~---------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~  169 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNIS---------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD  169 (493)
T ss_pred             EEEEEecCCCccccccC---------cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence            99999997653211100         0011123688899999999975 6899999999999999999999888989999


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc-EEEEEEcCCCCEEEEEe----CCCcEEEEeC
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG----KDQAIKLWDI  352 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~~----~dg~i~iwd~  352 (498)
                      .|.+++|+ +++.+|++++.|+.|++||++    .+..+..+.+|.+. +..+.|.+++..|++++    .|+.|++||+
T Consensus       170 ~V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        170 QITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             ceEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence            99999998 789999999999999999998    77788888888765 45677899888887654    4789999999


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEE
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYV  431 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~i  431 (498)
                      ++...                                 .+.....+..     .....+.|++++++|++++. |+.|++
T Consensus       245 r~~~~---------------------------------p~~~~~~d~~-----~~~~~~~~d~d~~~L~lggkgDg~Iri  286 (493)
T PTZ00421        245 RKMAS---------------------------------PYSTVDLDQS-----SALFIPFFDEDTNLLYIGSKGEGNIRC  286 (493)
T ss_pred             CCCCC---------------------------------ceeEeccCCC-----CceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence            87431                                 1111111111     11223467779999998874 999999


Q ss_pred             EECCCCcEEEEecc-CCCCeeeeEEcCCC
Q 010883          432 YDLVSGEQVAALKY-HTSPVRDCSWHPSQ  459 (498)
Q Consensus       432 wd~~~~~~~~~~~~-h~~~v~~l~~sp~~  459 (498)
                      ||+.+++.+..+.. +..++..++|.|.-
T Consensus       287 wdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        287 FELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             EEeeCCceEEEeeccCCCCCcceEecccc
Confidence            99999988776653 45678899998864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-30  Score=240.09  Aligned_cols=278  Identities=20%  Similarity=0.273  Sum_probs=225.1

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      .-++|+ ..+.||+|. +..|++|+..++... .+....  ...|+++.|+++|.+|++|..+|.|.|||..+.+.....
T Consensus       181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~-~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVT-ELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             hHhhcc-cCCeEEEEe-cceEEEEecCCCceE-EeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence            346788 445777774 447999999988532 222222  668999999999999999999999999999876654443


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEeCCCCCEEE
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGHLIY  293 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~  293 (498)
                      ..               .|...|-+++|.  +..+.+|+.++.|..+|++..+.... +.+|...|..+.|+ +++.+++
T Consensus       256 ~~---------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lA  317 (484)
T KOG0305|consen  256 RG---------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLA  317 (484)
T ss_pred             cC---------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeec
Confidence            31               267789999998  66799999999999999998876655 77899999999998 8999999


Q ss_pred             EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEe--CCCcEEEEeCCCCCCccccccCcccccc
Q 010883          294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      +|+.|+.+.|||..    ...++..+..|...|.+++|+| ....||+|+  .|+.|++||..+.               
T Consensus       318 SGgnDN~~~Iwd~~----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---------------  378 (484)
T KOG0305|consen  318 SGGNDNVVFIWDGL----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---------------  378 (484)
T ss_pred             cCCCccceEeccCC----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---------------
Confidence            99999999999996    7788899999999999999999 456788765  6999999999874               


Q ss_pred             cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE--EecCCeEEEEECCCCcEEEEeccCCC
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDSCVYVYDLVSGEQVAALKYHTS  448 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~  448 (498)
                                         ..+........   +    .++.|++..+-|++  |..++.|.||+..+.+++..+.+|..
T Consensus       379 -------------------~~i~~vdtgsQ---V----csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~  432 (484)
T KOG0305|consen  379 -------------------ARIDSVDTGSQ---V----CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS  432 (484)
T ss_pred             -------------------cEecccccCCc---e----eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence                               33333333222   2    22345556654544  34578999999999999999999999


Q ss_pred             CeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          449 PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       449 ~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      .|..++++|||..+++|+.|.++++|++-+..
T Consensus       433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  433 RVLYLALSPDGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             eeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence            99999999999999999999999999998763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7e-31  Score=232.10  Aligned_cols=306  Identities=17%  Similarity=0.174  Sum_probs=238.1

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--------------ec-CCCceeEEEEEeCCCC
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQ  188 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~--------------~~-~~~~~~v~~~~~sp~~  188 (498)
                      ...+..|.-+|.|++++||.++.++++.+++|.-|++.++.......              .. ..|...+.+++.+|||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            35667899999999999999999999999999999998885331111              11 2677889999999999


Q ss_pred             CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 010883          189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL  268 (498)
Q Consensus       189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~  268 (498)
                      +|||+|+.|..|.||+..+.+....+.                +|.+.|.+++|-.....|++++.|+.|++|++.....
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhccc----------------ccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            999999999999999999987655533                6888999999998888899999999999999999988


Q ss_pred             eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883          269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK  348 (498)
Q Consensus       269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~  348 (498)
                      +.++.+|.+.|..|... ..++.+.+|+.|+++++|++.     ......+.++.+.+-|++|-. ..++++|+.+|.|.
T Consensus       279 vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~-----eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~Ia  351 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIP-----EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIA  351 (479)
T ss_pred             HHHHhCCccceeeechh-cccceEEeccccceeEEEecc-----ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEE
Confidence            88999999999999986 667777788899999999993     455567788888999999985 46899999999999


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC  428 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  428 (498)
                      +|++.+..........+..                     ..      .+.. ........+++..|...++++|+.+|.
T Consensus       352 LWs~~KKkplf~~~~AHgv---------------------~~------~~~~-~~~~~Witsla~i~~sdL~asGS~~G~  403 (479)
T KOG0299|consen  352 LWSLLKKKPLFTSRLAHGV---------------------IP------ELDP-VNGNFWITSLAVIPGSDLLASGSWSGC  403 (479)
T ss_pred             EeeecccCceeEeeccccc---------------------cC------Cccc-cccccceeeeEecccCceEEecCCCCc
Confidence            9999885433222110000                     00      0000 000123344455668899999999999


Q ss_pred             EEEEECCCC----cEEEEeccCCCCeeeeEEcCCCCeEE-EEeCCCcEEEecCCCCCC
Q 010883          429 VYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       429 i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~-s~~~Dg~i~iw~~~~~~~  481 (498)
                      |++|-+..+    +++..+. -.+-|++++|+++|+.|+ ..+..-.+--|-......
T Consensus       404 vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~~  460 (479)
T KOG0299|consen  404 VRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSGK  460 (479)
T ss_pred             eEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeeccc
Confidence            999999887    4455554 568899999999999554 445666666666554433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.7e-30  Score=264.44  Aligned_cols=274  Identities=15%  Similarity=0.199  Sum_probs=212.8

Q ss_pred             CCeEEEEECCCCeEEEEE--eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccC
Q 010883          152 ASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  229 (498)
Q Consensus       152 dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (498)
                      +|.+++|+...-......  .....|...|.+++|+|++++|++|+.|+.|+||+..........    .+    .....
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~----~~----~~~~~  528 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD----IH----YPVVE  528 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc----cc----cceEE
Confidence            677888888764322111  112347889999999999999999999999999997642110000    00    00000


Q ss_pred             CCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc
Q 010883          230 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC  308 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~  308 (498)
                       ..+...+.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||+|++||++ 
T Consensus       529 -~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-  606 (793)
T PLN00181        529 -LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-  606 (793)
T ss_pred             -ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-
Confidence             01234789999987 578999999999999999999999999999999999999987788999999999999999998 


Q ss_pred             ccCCCceeEEeccccccEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883          309 LNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP  387 (498)
Q Consensus       309 ~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (498)
                         .+..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++...                               
T Consensus       607 ---~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-------------------------------  651 (793)
T PLN00181        607 ---QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-------------------------------  651 (793)
T ss_pred             ---CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------------------------------
Confidence               66677777644 678999995 579999999999999999998632                               


Q ss_pred             CCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC------CcEEEEeccCCCCeeeeEEcCCCCe
Q 010883          388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS------GEQVAALKYHTSPVRDCSWHPSQPM  461 (498)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~sp~~~~  461 (498)
                        ..+..+.+|.....  .+.    |. ++.+|++++.|+.|++||+..      ..++..+.+|...+..++|+|++++
T Consensus       652 --~~~~~~~~h~~~V~--~v~----f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~  722 (793)
T PLN00181        652 --LPLCTMIGHSKTVS--YVR----FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY  722 (793)
T ss_pred             --ccceEecCCCCCEE--EEE----Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence              12344555553322  222    22 578999999999999999974      3577889999999999999999999


Q ss_pred             EEEEeCCCcEEEecCCCC
Q 010883          462 LVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       462 l~s~~~Dg~i~iw~~~~~  479 (498)
                      |++|+.||.|++|+....
T Consensus       723 lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        723 IATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEEEeCCCEEEEEECCCC
Confidence            999999999999997644

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-30  Score=220.09  Aligned_cols=312  Identities=16%  Similarity=0.160  Sum_probs=222.1

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI  202 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~i  202 (498)
                      -.|.+|...|++++||.||++||+++.|++|+||++..-... ++.+...-..+..+.+.|+||-+-++.... ...+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            467899999999999999999999999999999998752110 011111111124788999999887666554 457999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      |.+...+--.........+.+.|    ...|...+..+-.-.++.+|++++.|..|.+|++. |+.+..+......-...
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEF----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEeeecccCCCCccccccccccc----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            98753322111110001111111    12466678888888889999999999999999998 88888887766667778


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCcccc----CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLN----VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      +.+ |+|+++++++..-.|++|.+--..    ..-..+..+.+|...|..++|+|+...+++.+.||.++|||..-....
T Consensus       235 avS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  235 AVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            887 899999999999999999874211    022345678899999999999999999999999999999998752111


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEc--cCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK--GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                      ..                   +.        ..+....  .+.......    .+..+|.|+.||.+. ...+++|..++
T Consensus       314 ~q-------------------Dp--------k~Lk~g~~pl~aag~~p~----RL~lsP~g~~lA~s~-gs~l~~~~se~  361 (420)
T KOG2096|consen  314 GQ-------------------DP--------KILKEGSAPLHAAGSEPV----RLELSPSGDSLAVSF-GSDLKVFASED  361 (420)
T ss_pred             CC-------------------Cc--------hHhhcCCcchhhcCCCce----EEEeCCCCcEEEeec-CCceEEEEccc
Confidence            00                   00        0111110  000001111    235677899887764 45699999999


Q ss_pred             CcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          437 GEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       437 ~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      |+...+++ .|...|.+++|+++|++++|++ |..+++..
T Consensus       362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  362 GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            98877775 7999999999999999999997 67788876

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=1.7e-29  Score=232.55  Aligned_cols=247  Identities=30%  Similarity=0.458  Sum_probs=209.8

Q ss_pred             CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      .+|..+|++++|+|++++|++++.+|.|.+|++.+++......                .|...+..+.|+|++++|+++
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~   69 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK----------------GHTGPVRDVAASADGTYLASG   69 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe----------------cCCcceeEEEECCCCCEEEEE
Confidence            4677899999999999999999999999999998775322221                355578899999999999999


Q ss_pred             eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          253 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                      +.+|.|++||+.+++....+..|...+.++.|+ +++.++++++.||.|++||++    .......+..|...+.++.|+
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i~~~~~~  144 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVE----TGKCLTTLRGHTDWVNSVAFS  144 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEeccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECC----CcEEEEEeccCCCcEEEEEEc
Confidence            999999999999988888888999999999998 567888888889999999997    677788888899999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                      |++.++++++.|+.|++||++..                                  +.+..+..+..  .    ..+..
T Consensus       145 ~~~~~l~~~~~~~~i~i~d~~~~----------------------------------~~~~~~~~~~~--~----i~~~~  184 (289)
T cd00200         145 PDGTFVASSSQDGTIKLWDLRTG----------------------------------KCVATLTGHTG--E----VNSVA  184 (289)
T ss_pred             CcCCEEEEEcCCCcEEEEEcccc----------------------------------ccceeEecCcc--c----cceEE
Confidence            99999998888999999999853                                  33333443331  1    22335


Q ss_pred             cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ++|+++.+++++.++.|++||+.+++.+..+..|...|.+++|+|++.++++++.||.|++|++....
T Consensus       185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence            67789899999999999999999999999998899999999999998899988889999999998644

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=3.2e-30  Score=221.45  Aligned_cols=286  Identities=16%  Similarity=0.229  Sum_probs=220.1

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ....|..+|.+++.+|+.+++++|+.|..-.+|++.++.......                +|...|+++.|+.+|.+||
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt----------------gHKDSVt~~~FshdgtlLA  122 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT----------------GHKDSVTCCSFSHDGTLLA  122 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec----------------CCCCceEEEEEccCceEEE
Confidence            456788899999999999999999999999999999988433322                6888999999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      +|..+|.|+||...++.....+...-..+.-+.|+ |.+.+|++|+.||.+.+|.+.    +....+.+.+|..++++=.
T Consensus       123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip----~~~~~kv~~Gh~~~ct~G~  197 (399)
T KOG0296|consen  123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIP----SQALCKVMSGHNSPCTCGE  197 (399)
T ss_pred             ecCCCccEEEEEcccCceEEEeecccCceEEEEec-ccccEEEeecCCCcEEEEECC----CcceeeEecCCCCCccccc
Confidence            99999999999999999888887677788899998 689999999999999999997    6678889999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc------------cccCCCCceEEEEccC
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR------------DLKHPCDQSVATYKGH  398 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~  398 (498)
                      |.|+|+.++++..||+|++||+.+.+.........   .....++.+...+.            .+....++.+....+.
T Consensus       198 f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~  274 (399)
T KOG0296|consen  198 FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE---GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT  274 (399)
T ss_pred             ccCCCceEEEEecCceEEEEecCCCceeEEecccc---cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence            99999999999999999999999875443332100   00011111111111            1111122223333210


Q ss_pred             ce-----eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883          399 SV-----LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR  473 (498)
Q Consensus       399 ~~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i  473 (498)
                      ..     ......+.-+..+|..-.+.|+|+-||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.||.|+.
T Consensus       275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~  352 (399)
T KOG0296|consen  275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQ  352 (399)
T ss_pred             CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEe
Confidence            00     00111122223355566789999999999999999888877776 888999999998 679999999999999


Q ss_pred             ecCCCCCCC
Q 010883          474 WEFPGNGEA  482 (498)
Q Consensus       474 w~~~~~~~~  482 (498)
                      ||..++...
T Consensus       353 wDaRtG~l~  361 (399)
T KOG0296|consen  353 WDARTGQLK  361 (399)
T ss_pred             eeccccceE
Confidence            999988643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=2.8e-30  Score=239.51  Aligned_cols=338  Identities=22%  Similarity=0.262  Sum_probs=236.1

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-----------CCeEEEEECCCeEEE
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----------QRHLVYASMSPIVHI  202 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l~~~s~d~~i~i  202 (498)
                      ..++.|++....|.+...|..++|||+..-.++.+....-.|...|..+.--|-           ..-+++++.|++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            457889999999999999999999999886666555555556667777765541           124789999999999


Q ss_pred             EECCCCceecccc----------ccccccCccc-----------cccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883          203 VDVGSGTMESLAN----------VTEIHDGLDF-----------SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  261 (498)
Q Consensus       203 wd~~~~~~~~~~~----------~~~~~~~~~~-----------~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw  261 (498)
                      |++..+.......          +........+           .....-+....+.+++.+|+|++||+|..-|+++||
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            9998633211111          0000000000           001111345689999999999999999999999999


Q ss_pred             ECCCCeeeEEEeccCCCeeEEEEeCC--CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC--CE
Q 010883          262 DLEANKLSLRILAHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RY  337 (498)
Q Consensus       262 d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~  337 (498)
                      ++...+....+..|...|.|+.|+-|  ...+|++++.|..|.|||+.   ....++.++.+|...|+++.|.-+|  ..
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---rny~l~qtld~HSssITsvKFa~~gln~~  563 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---RNYDLVQTLDGHSSSITSVKFACNGLNRK  563 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---cccchhhhhcccccceeEEEEeecCCceE
Confidence            99999888889999999999999844  35789999999999999985   2445666777777777777776555  45


Q ss_pred             EEEEeCCCcEEEEeCCCCCCccccccCcc-cccccceeecCCc------------CcccccCCCCceEEEEccCcee-EE
Q 010883          338 LISNGKDQAIKLWDIRKMSSNASCNLGFR-SYEWDYRWMDYPP------------QARDLKHPCDQSVATYKGHSVL-RT  403 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~  403 (498)
                      +++++.|+.|.+--.++......+..... .....+..|...|            +.+.+....++..+.|++.... ..
T Consensus       564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~  643 (1080)
T KOG1408|consen  564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD  643 (1080)
T ss_pred             EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence            66666665554332221111111100000 0000011111111            1222223335667777765433 45


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      .+.....    |.|.||++.+.|.++.++|..+|+++.+..+|...|+.+.|.+|.+.|++.+.||.|.||.++.
T Consensus       644 lIKv~lD----PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  644 LIKVILD----PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eEEEEEC----CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            5555544    4799999999999999999999999999999999999999999999999999999999999875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.9e-29  Score=221.26  Aligned_cols=283  Identities=17%  Similarity=0.239  Sum_probs=234.5

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      ...|.++...|..+.+++|+.|..+.++|...+.   .+....+|...|+.+.|+|+...+++++.|..|+||.......
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhh---hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence            3468888888888899999999999999998873   3346688999999999999999999999999999999876553


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec--cCCCeeEEEEeCCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDES  288 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~  288 (498)
                      .....                .|..+|+.+..+|.|.||++++.|+...+.|++++..+.....  ..-.+++.+|+ |+
T Consensus       296 ~~~~~----------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pD  358 (506)
T KOG0289|consen  296 PTSSR----------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PD  358 (506)
T ss_pred             ccccc----------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CC
Confidence            22221                4667999999999999999999999999999999998766643  22458999997 89


Q ss_pred             CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883          289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY  368 (498)
Q Consensus       289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  368 (498)
                      |.+|.+|..||.|++||+.    ....+..|.+|.++|..++|+.+|-+|++++.|+.|++||+|+...           
T Consensus       359 gLifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----------  423 (506)
T KOG0289|consen  359 GLIFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----------  423 (506)
T ss_pred             ceEEeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----------
Confidence            9999999999999999998    7778889999999999999999999999999999999999998542           


Q ss_pred             cccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC--CCcEEEEeccC
Q 010883          369 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV--SGEQVAALKYH  446 (498)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h  446 (498)
                                             +.++...... .+..    ..|.+.|.+|++++.|=+|++++-.  +..++..+..|
T Consensus       424 -----------------------~kt~~l~~~~-~v~s----~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~  475 (506)
T KOG0289|consen  424 -----------------------FKTIQLDEKK-EVNS----LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH  475 (506)
T ss_pred             -----------------------cceeeccccc-ccee----EEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence                                   2222222111 1222    2455589999999888777777744  45677788889


Q ss_pred             CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      .+..+.+.|....++++++|.|..++++.+
T Consensus       476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccccceeeecccceEEeeccchhheEEeec
Confidence            999999999999999999999999998865

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=3e-31  Score=235.77  Aligned_cols=254  Identities=19%  Similarity=0.266  Sum_probs=210.7

Q ss_pred             EeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCC
Q 010883          169 DILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG  246 (498)
Q Consensus       169 ~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g  246 (498)
                      .....+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.+...+.                +|..+|.+++|+++|
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~----------------gH~k~Vrd~~~s~~g  270 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK----------------GHRKPVRDASFNNCG  270 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh----------------cchhhhhhhhccccC
Confidence            345678999999999999 899999999999999999876 55555444                788899999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883          247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI  326 (498)
Q Consensus       247 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v  326 (498)
                      ..+++++.|+.|++||+++|+++.++. ....++|+.|.|.+.+.|++|+.|+.|+.||+|    .++.+..+..|.+.|
T Consensus       271 ~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR----s~kvvqeYd~hLg~i  345 (503)
T KOG0282|consen  271 TSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR----SGKVVQEYDRHLGAI  345 (503)
T ss_pred             CeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc----chHHHHHHHhhhhhe
Confidence            999999999999999999999988873 456789999996666999999999999999999    888999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      ..+.|-++|+.+++.+.|+.++||+.+......                               .+.....|+    .  
T Consensus       346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-------------------------------~i~~~~~hs----m--  388 (503)
T KOG0282|consen  346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-------------------------------NIADPEMHT----M--  388 (503)
T ss_pred             eeeEEccCCceEeeeccCccEEEEEcCCCccch-------------------------------hhcchhhcc----C--
Confidence            999999999999999999999999998732111                               011111111    1  


Q ss_pred             EEeccccCCCCcEEEEEecCCeEEEEECCCC---cEEEEeccCC--CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHT--SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                        -+....|+++++++-+.|+.|.+|.+...   .....+++|.  +.-..+.|||||.+|++|+.||.+.+||..+...
T Consensus       389 --P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl  466 (503)
T KOG0282|consen  389 --PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL  466 (503)
T ss_pred             --cceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence              12245679999999999999999987543   2334566775  4567789999999999999999999999987655


Q ss_pred             C
Q 010883          482 A  482 (498)
Q Consensus       482 ~  482 (498)
                      .
T Consensus       467 ~  467 (503)
T KOG0282|consen  467 V  467 (503)
T ss_pred             h
Confidence            4

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7.2e-31  Score=221.97  Aligned_cols=258  Identities=19%  Similarity=0.255  Sum_probs=214.3

Q ss_pred             CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      ....+.|..|+|||++|++|+.||.|.+||..+|+...-.+.....        ...-+..+|.|+.|+.|...|++|+.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--------~fMMmd~aVlci~FSRDsEMlAsGsq  283 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--------NFMMMDDAVLCISFSRDSEMLASGSQ  283 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--------ceeecccceEEEeecccHHHhhccCc
Confidence            3446889999999999999999999999999999875544432211        12235668999999999999999999


Q ss_pred             CCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          255 DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       255 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      ||.|++|.+.+|.+++++. .|...|+|+.|+ .++..+++++.|.++++.-+.    .++.+..+.+|...|+...|.+
T Consensus       284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~  358 (508)
T KOG0275|consen  284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTD  358 (508)
T ss_pred             CCcEEEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcC
Confidence            9999999999999999987 899999999998 788889999999999999998    8999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      ||.++++++.||+|++|+..+..                                  ++.+|+.......+.....-|. 
T Consensus       359 dG~~iisaSsDgtvkvW~~Ktte----------------------------------C~~Tfk~~~~d~~vnsv~~~PK-  403 (508)
T KOG0275|consen  359 DGHHIISASSDGTVKVWHGKTTE----------------------------------CLSTFKPLGTDYPVNSVILLPK-  403 (508)
T ss_pred             CCCeEEEecCCccEEEecCcchh----------------------------------hhhhccCCCCcccceeEEEcCC-
Confidence            99999999999999999998843                                  3444443333333444444443 


Q ss_pred             CCCCcEEEEEecCCeEEEEECCCCcEEEEecc---CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                        +...++++...++|+|.++ .|+.+..+..   ..+...+++.+|.|.++...+.|+.++.+.+..++...
T Consensus       404 --npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~  473 (508)
T KOG0275|consen  404 --NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER  473 (508)
T ss_pred             --CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence              5667888889999999997 6777777752   34567788899999999999999999999998886543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3e-29  Score=210.35  Aligned_cols=278  Identities=14%  Similarity=0.130  Sum_probs=215.5

Q ss_pred             CCceEEEEEcC-CCCEEEEEECCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          131 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      .+.|.+++||| ...++++++.||+||+|+++.. ....  .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            77899999999 5667779999999999999873 3322  344678889999999999999999999999999999999


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  286 (498)
                      +...+.                 .|.++|.++.|-+...  .|++|+.|.+|+.||.+...++.++ .-...+.++..- 
T Consensus       105 Q~~~v~-----------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~-~LPeRvYa~Dv~-  165 (347)
T KOG0647|consen  105 QVSQVA-----------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL-QLPERVYAADVL-  165 (347)
T ss_pred             Ceeeee-----------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee-eccceeeehhcc-
Confidence            765443                 3777999999998665  8999999999999999998888777 445667776653 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                        ..+++++..+..|.+|+++......+..  .....-.+.+++..+|....+.|+-.|.+.|..+......        
T Consensus       166 --~pm~vVata~r~i~vynL~n~~te~k~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~--------  233 (347)
T KOG0647|consen  166 --YPMAVVATAERHIAVYNLENPPTEFKRI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK--------  233 (347)
T ss_pred             --CceeEEEecCCcEEEEEcCCCcchhhhh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--------
Confidence              4578899999999999997322111111  1112345889999988888899999999999998874321        


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCcee---EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL---RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                              .-.+|+.|+..   ...+-...+.+|.|.-..|++++.||++.+||-.....+...
T Consensus       234 ------------------------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s  289 (347)
T KOG0647|consen  234 ------------------------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS  289 (347)
T ss_pred             ------------------------CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc
Confidence                                    11233333321   111222334456667788999999999999999988889998


Q ss_pred             ccCCCCeeeeEEcCCCCeEEEE
Q 010883          444 KYHTSPVRDCSWHPSQPMLVSS  465 (498)
Q Consensus       444 ~~h~~~v~~l~~sp~~~~l~s~  465 (498)
                      +.|..+|++++|+.+|.++|-+
T Consensus       290 ~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  290 ETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CcCCCccceeEecCCCCEEEEE
Confidence            9999999999999999988765

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.9e-30  Score=208.07  Aligned_cols=245  Identities=18%  Similarity=0.253  Sum_probs=200.4

Q ss_pred             CCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCC
Q 010883          131 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      .+.++.++|++.. +.+++++.||++++||+...  ...+...+.|...|.++.|++ +++.+++++.|++|++|+..-+
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~  137 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP  137 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence            6789999999975 68889999999999996543  234456678888999999999 5567788899999999998776


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      +.+..+.                ||...|...+|+| ..+.+++++.|+.+++||++.......+..|...+.|+.|+.-
T Consensus       138 ~Sv~Tf~----------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky  201 (311)
T KOG0277|consen  138 NSVQTFN----------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY  201 (311)
T ss_pred             cceEeec----------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence            6554433                6888999999999 6779999999999999999876555558899999999999988


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                      +.++|++|+.|+.|+.||++..   ..++..+.+|.-.|..+.|+|.. ..|++++.|=+++|||.....          
T Consensus       202 ~~~vl~Tg~vd~~vr~wDir~~---r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d----------  268 (311)
T KOG0277|consen  202 NHNVLATGGVDNLVRGWDIRNL---RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD----------  268 (311)
T ss_pred             CCcEEEecCCCceEEEEehhhc---cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch----------
Confidence            9999999999999999999844   46788899999999999999964 678999999999999988632          


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL  434 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~  434 (498)
                                             ..+.++..|..  .+....|++.   ++.++|+.+.|+.++||+.
T Consensus       269 -----------------------s~~e~~~~HtE--Fv~g~Dws~~---~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  269 -----------------------SAIETVDHHTE--FVCGLDWSLF---DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -----------------------hhhhhhhccce--EEeccccccc---cCceeeecccccceeeecc
Confidence                                   33444455552  2223334443   6779999999999999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=220.47  Aligned_cols=292  Identities=17%  Similarity=0.285  Sum_probs=230.4

Q ss_pred             CCccccchhhhhhhhhcC-----CCCCccccc---cccccccccccCCCC---CccccCCCCceEEEEEcCCCCEEEEEE
Q 010883           82 KRHLPVSTVKMLAGREGN-----YSGRGRFSA---ADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAGF  150 (498)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~dg~~la~~~  150 (498)
                      +...|......+..+...     ++..|++-+   .+++.+.+...+...   ..++.+|..+|.-+.||||.++|++|+
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg  288 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG  288 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence            344455555555544222     255555433   466777777666655   678899999999999999999999999


Q ss_pred             CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCC
Q 010883          151 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  230 (498)
Q Consensus       151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
                      .|..+.+||+.+|.......  .++...+.+++|.|||..+++|+.|+.|..||++......-... .            
T Consensus       289 ~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv-r------------  353 (519)
T KOG0293|consen  289 FDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV-R------------  353 (519)
T ss_pred             chHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-c------------
Confidence            99999999999996655433  34667899999999999999999999999999986543211111 1            


Q ss_pred             CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883          231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN  310 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~  310 (498)
                         ...|.+++.++||+++++.+.|..|++++.++..... +.....+|++++.+ .+++++++.-.+..+++||+.   
T Consensus       354 ---~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS-~d~k~~LvnL~~qei~LWDl~---  425 (519)
T KOG0293|consen  354 ---DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE---  425 (519)
T ss_pred             ---cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEc-CCCcEEEEEcccCeeEEeecc---
Confidence               1169999999999999999999999999998866543 33556789999998 899999999999999999998   


Q ss_pred             CCCceeEEecccccc--EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883          311 VKGKPAGVLMGHLEG--ITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP  387 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~--v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (498)
                       ....+..+.+|...  +..-+|-. +..++++|+.|+.|+||+..+                                 
T Consensus       426 -e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s---------------------------------  471 (519)
T KOG0293|consen  426 -ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS---------------------------------  471 (519)
T ss_pred             -hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC---------------------------------
Confidence             77888888888765  33334543 558999999999999999988                                 


Q ss_pred             CCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                       +.++..+.||.  .++..+.|+|+   +...+|+|+.||+|+||-...
T Consensus       472 -gkll~~LsGHs--~~vNcVswNP~---~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  472 -GKLLAVLSGHS--KTVNCVSWNPA---DPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             -CceeEeecCCc--ceeeEEecCCC---CHHHhhccCCCCeEEEecCCc
Confidence             58899999999  55666677776   788999999999999998653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.5e-28  Score=205.81  Aligned_cols=252  Identities=20%  Similarity=0.265  Sum_probs=201.6

Q ss_pred             CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      ....|+++.|+++|.+|++++.|..++|||..+++........                ...+..++|......++.++.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk----------------kyG~~~~~Fth~~~~~i~sSt   76 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK----------------KYGVDLACFTHHSNTVIHSST   76 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc----------------cccccEEEEecCCceEEEccC
Confidence            3457999999999999999999999999999999876665533                236778888877777777776


Q ss_pred             --CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          255 --DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       255 --dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                        |.+|+..++.+++.++.+.+|...|++++.+ |.++.+++++.|++|++||++    ..++...+..  ..-..++|.
T Consensus        77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR----~~~cqg~l~~--~~~pi~AfD  149 (311)
T KOG1446|consen   77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLR----VKKCQGLLNL--SGRPIAAFD  149 (311)
T ss_pred             CCCCceEEEEeecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEec----CCCCceEEec--CCCcceeEC
Confidence              8899999999999999999999999999999 556899999999999999998    4444444432  333457899


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                      |.|-++|++.....|++||+|....                                .+..++.-..   ....-...+.
T Consensus       150 p~GLifA~~~~~~~IkLyD~Rs~dk--------------------------------gPF~tf~i~~---~~~~ew~~l~  194 (311)
T KOG1446|consen  150 PEGLIFALANGSELIKLYDLRSFDK--------------------------------GPFTTFSITD---NDEAEWTDLE  194 (311)
T ss_pred             CCCcEEEEecCCCeEEEEEecccCC--------------------------------CCceeEccCC---CCccceeeeE
Confidence            9999999998888999999998642                                2222222211   0001112346


Q ss_pred             cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCe---eeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      |||||++|+.++..+.+++.|.-+|..+..+..+...-   .+.+|+||++++++|+.||+|++|++.++.....
T Consensus       195 FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  195 FSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence            88899999999999999999999999999988665432   5789999999999999999999999988766543

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.2e-28  Score=234.18  Aligned_cols=257  Identities=19%  Similarity=0.244  Sum_probs=193.6

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCC
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD  256 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg  256 (498)
                      .|.....++++..+++++.+.....|+...+...  ........ .........+|.+.|.+++|+| ++++|++|+.|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~-~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LKHTDYGK-LASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEE--eecccccc-CCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4666667788777888888888888987665321  11111000 0011122357999999999999 889999999999


Q ss_pred             eEEEEECCCC-------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          257 CIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       257 ~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      +|++||+.++       +.+..+.+|...|.+++|+|..+++|++++.|++|++||+.    .+..+..+.+|...|.++
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~----tg~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSL  174 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC----CCeEEEEEcCCCCceEEE
Confidence            9999999765       34567889999999999996556899999999999999998    777888889999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      +|+|++.+|++++.|+.|++||+++.                                  ..+..+.+|..... ..+.|
T Consensus       175 a~spdG~lLatgs~Dg~IrIwD~rsg----------------------------------~~v~tl~~H~~~~~-~~~~w  219 (493)
T PTZ00421        175 EWNLDGSLLCTTSKDKKLNIIDPRDG----------------------------------TIVSSVEAHASAKS-QRCLW  219 (493)
T ss_pred             EEECCCCEEEEecCCCEEEEEECCCC----------------------------------cEEEEEecCCCCcc-eEEEE
Confidence            99999999999999999999999873                                  44555666643211 12333


Q ss_pred             ccccCCCCcEEEEEe----cCCeEEEEECCCCc-EEEEeccC-CCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 010883          410 SPVYSTGQKYIYTGS----HDSCVYVYDLVSGE-QVAALKYH-TSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG  480 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~~~  480 (498)
                          .+++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ .||.|++||+..+.
T Consensus       220 ----~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        220 ----AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             ----cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence                34556666543    47899999998754 44444333 34566678999999999887 59999999998764

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.1e-27  Score=231.21  Aligned_cols=257  Identities=18%  Similarity=0.238  Sum_probs=190.1

Q ss_pred             EECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccc
Q 010883          149 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA  227 (498)
Q Consensus       149 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (498)
                      |+.++.|++|+......   .....+|...|.+++|+|+ +.+|++|+.|+.|+|||+.++..... ....       ..
T Consensus        50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~-------p~  118 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKD-------PQ  118 (568)
T ss_pred             CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-cccc-------ce
Confidence            56688999999876532   3345688889999999996 78999999999999999976432100 0000       00


Q ss_pred             cCCCCceecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcC
Q 010883          228 ADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR  306 (498)
Q Consensus       228 ~~~~~h~~~i~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~  306 (498)
                      ....+|...|.+++|+|++.. |++++.|+.|++||+.+++....+. |...|.+++|+ +++.+|++++.|+.|++||+
T Consensus       119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence            012367889999999999875 4688999999999999998777664 66889999998 78999999999999999999


Q ss_pred             ccccCCCceeEEeccccccEEEE-----EEcCCCCEEEEEeCCC----cEEEEeCCCCCCccccccCcccccccceeecC
Q 010883          307 RCLNVKGKPAGVLMGHLEGITFI-----DSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY  377 (498)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~v~~l-----~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (498)
                      +    .+..+..+.+|.+.+...     .|++++.+|++++.|+    .|+|||++...                     
T Consensus       197 R----sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---------------------  251 (568)
T PTZ00420        197 R----KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---------------------  251 (568)
T ss_pred             C----CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---------------------
Confidence            8    778888899998765432     3468889999988774    79999998632                     


Q ss_pred             CcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--cCCCCeeeeEE
Q 010883          378 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSW  455 (498)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~  455 (498)
                                  .++..+..+.....+... +.   +++|.++++|+.|+.|++|++..+.. ..+.  .+..++.+++|
T Consensus       252 ------------~pl~~~~ld~~~~~L~p~-~D---~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f  314 (568)
T PTZ00420        252 ------------SALVTMSIDNASAPLIPH-YD---ESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGF  314 (568)
T ss_pred             ------------CceEEEEecCCccceEEe-ee---CCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEE
Confidence                        233333222211111111 11   33688999999999999999987643 2232  25678899999


Q ss_pred             cCCCC
Q 010883          456 HPSQP  460 (498)
Q Consensus       456 sp~~~  460 (498)
                      .|...
T Consensus       315 ~Pkr~  319 (568)
T PTZ00420        315 LPKQI  319 (568)
T ss_pred             ccccc
Confidence            99753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.2e-29  Score=219.81  Aligned_cols=263  Identities=22%  Similarity=0.366  Sum_probs=215.3

Q ss_pred             CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccc---cccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE---IHDGLDFSAADDGGYSFGIFSLKFSTDGREL  249 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l  249 (498)
                      ..|.-+|++++++|++++.++++.+++|.-|++.+++.....-...   ...+..+.... .+|...+.+++.++||++|
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCCCcEE
Confidence            4566689999999999999999999999999999987552221111   00122222222 4799999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      ++|+.|..|.||+..+.+.+..+.+|.+.|.+++|- ...+.+++++.|+.|++|++.    ....+.++.+|.+.|..|
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~----~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSID----QLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             EecCCCceEEEecCcccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehh----HhHHHHHHhCCccceeee
Confidence            999999999999999999999999999999999996 777889999999999999998    777888999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      ....-++.+-+|+.|+++++|++..                                   ..-..|.++........++ 
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~e-----------------------------------esqlifrg~~~sidcv~~I-  336 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPE-----------------------------------ESQLIFRGGEGSIDCVAFI-  336 (479)
T ss_pred             chhcccceEEeccccceeEEEeccc-----------------------------------cceeeeeCCCCCeeeEEEe-
Confidence            9988888888899999999999954                                   3334445554222222221 


Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-cC-----------CCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YH-----------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h-----------~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                            +...+++|+.+|.|.+|++...+++.+.. +|           ...|++++..|...++++|+.+|.|++|.+.
T Consensus       337 ------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  337 ------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             ------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence                  56789999999999999999999887764 23           1278999999999999999999999999999


Q ss_pred             CCCCCC
Q 010883          478 GNGEAA  483 (498)
Q Consensus       478 ~~~~~~  483 (498)
                      .+-...
T Consensus       411 ~g~r~i  416 (479)
T KOG0299|consen  411 DGLRAI  416 (479)
T ss_pred             CCcccc
Confidence            885443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.7e-28  Score=211.89  Aligned_cols=270  Identities=19%  Similarity=0.281  Sum_probs=209.0

Q ss_pred             CCCCccccCCCCceEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEE-EeecCCCceeEEEEEeCCCCCeEEEEEC
Q 010883          121 VNGPWPVDQTTSRAYVSQFSADG---SLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASM  196 (498)
Q Consensus       121 ~~~~~~l~~h~~~v~~~~~s~dg---~~la~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~s~  196 (498)
                      .+....+.+|.++|.+++|--..   ..|++++.|.++++|..+.+..... .....+|...|-+++..++|..+++|+.
T Consensus       134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~  213 (423)
T KOG0313|consen  134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW  213 (423)
T ss_pred             CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc
Confidence            34456788999999988875433   3699999999999999987743322 2234589999999999999999999999


Q ss_pred             CCeEEEEECCCCceecccccc---------ccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883          197 SPIVHIVDVGSGTMESLANVT---------EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      |..|.||+..+..........         ....+...+.....||+.+|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            999999994432211111111         111112222334568999999999998 6679999999999999999999


Q ss_pred             eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCc
Q 010883          268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQA  346 (498)
Q Consensus       268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~  346 (498)
                      ...++. ....++|+.++ +..++|++|+.|..+++||.+... .......+.+|...|.++.|+|.. .+|++++.|++
T Consensus       293 ~~~~~~-~~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t  369 (423)
T KOG0313|consen  293 LKSTLT-TNKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT  369 (423)
T ss_pred             ceeeee-cCcceeEeecc-cccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence            988875 45678999998 688999999999999999999663 445667899999999999999954 56889999999


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD  426 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  426 (498)
                      +++||+|+..                                 .++..+.+|.  ..+....|.     ++.+|++|+.|
T Consensus       370 ~klWDvRS~k---------------------------------~plydI~~h~--DKvl~vdW~-----~~~~IvSGGaD  409 (423)
T KOG0313|consen  370 VKLWDVRSTK---------------------------------APLYDIAGHN--DKVLSVDWN-----EGGLIVSGGAD  409 (423)
T ss_pred             EEEEEeccCC---------------------------------CcceeeccCC--ceEEEEecc-----CCceEEeccCc
Confidence            9999999843                                 3566666664  333333343     57799999999


Q ss_pred             CeEEEEEC
Q 010883          427 SCVYVYDL  434 (498)
Q Consensus       427 g~i~iwd~  434 (498)
                      .+|+|+.-
T Consensus       410 ~~l~i~~~  417 (423)
T KOG0313|consen  410 NKLRIFKG  417 (423)
T ss_pred             ceEEEecc
Confidence            99999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=6.5e-29  Score=219.75  Aligned_cols=271  Identities=20%  Similarity=0.326  Sum_probs=211.8

Q ss_pred             cCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEE-------EeecCCCceeEEEEEeCCCC-CeEEEEECCC
Q 010883          128 DQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQK-------DILAKSLRWTVTDTSLSPDQ-RHLVYASMSP  198 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~  198 (498)
                      ..|.+.|+.+..-|.. .++|+++..+.|.|||..+......       .+...+|...-+.++|++.. -.|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            5689999999999976 5677788899999999876422222       12445676667889999954 4788999999


Q ss_pred             eEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeeeEEEec
Q 010883          199 IVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRILA  274 (498)
Q Consensus       199 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~--~~~~~~~~~~  274 (498)
                      .|.+||+...... ......          ....+|...|..++|++ +...|++++.|+.+.|||++  +.++.....+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~----------~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPK----------TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             cEEEEeccccccCCccccce----------EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            9999999765442 111111          11236888999999999 55678899999999999999  5666677789


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~  353 (498)
                      |.++|+|++|+|.++.+||+|+.|++|++||+|...   .++..+.+|...|.++.|+|+ ...|++++.|+.+.+||+.
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            999999999999999999999999999999999553   488899999999999999996 4678899999999999997


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd  433 (498)
                      .......                                                  +.   +       ..||      
T Consensus       348 ~ig~eq~--------------------------------------------------~e---d-------a~dg------  361 (422)
T KOG0264|consen  348 RIGEEQS--------------------------------------------------PE---D-------AEDG------  361 (422)
T ss_pred             ccccccC--------------------------------------------------hh---h-------hccC------
Confidence            6321110                                                  00   0       0122      


Q ss_pred             CCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCC
Q 010883          434 LVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       434 ~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~  479 (498)
                        ..+++..-.||...|.++.|+|..+ .|+|++.|+.+.||++...
T Consensus       362 --ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  362 --PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             --CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence              2345556668999999999999998 6788899999999998743

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=5.8e-28  Score=223.87  Aligned_cols=285  Identities=17%  Similarity=0.265  Sum_probs=232.4

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEE-EEeCC-CCCeEEEEECCCeEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSP-DQRHLVYASMSPIVH  201 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~sp-~~~~l~~~s~d~~i~  201 (498)
                      ...+.+|+..|..+++.++. .+++++.||++++|+-..+..+. .....++.+-|.. +++.+ ++-.|++|+.|..|.
T Consensus         7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCcceEeecccceEE
Confidence            35678999999999987655 78899999999999986553333 2334445555655 88876 445699999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      +|...+.......+                ||...|.|+....++. +++|+.|.++++|-..  ++...+.+|+..|.+
T Consensus        85 v~~~~~~~P~~~Lk----------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   85 VFKLSQAEPLYTLK----------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWA  145 (745)
T ss_pred             EEecCCCCchhhhh----------------ccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheee
Confidence            99998876654443                7888999999888887 9999999999999764  455668899999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      ++.. +++ .+++|+.|.+|++|.      .++.+.++.+|.+.|+.+++-+++ .|++++.||.|++|++..       
T Consensus       146 v~~l-~e~-~~vTgsaDKtIklWk------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-------  209 (745)
T KOG0301|consen  146 VASL-PEN-TYVTGSADKTIKLWK------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-------  209 (745)
T ss_pred             eeec-CCC-cEEeccCcceeeecc------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC-------
Confidence            9987 444 888999999999998      568889999999999999998764 589999999999999954       


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                  ..+..+.+|......+      ....++..++++++|++++||+..  ++.+
T Consensus       210 ----------------------------e~l~~~~ghtn~vYsi------s~~~~~~~Ivs~gEDrtlriW~~~--e~~q  253 (745)
T KOG0301|consen  210 ----------------------------EVLLEMHGHTNFVYSI------SMALSDGLIVSTGEDRTLRIWKKD--ECVQ  253 (745)
T ss_pred             ----------------------------ceeeeeeccceEEEEE------EecCCCCeEEEecCCceEEEeecC--ceEE
Confidence                                        7888889998655444      344578899999999999999965  7888


Q ss_pred             EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .+......|+++.+-++|. |++|+.||.|+||........
T Consensus       254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A  293 (745)
T KOG0301|consen  254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKA  293 (745)
T ss_pred             EEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccC
Confidence            8875556899999988886 778889999999998755443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-27  Score=200.90  Aligned_cols=270  Identities=18%  Similarity=0.268  Sum_probs=209.6

Q ss_pred             EEEEECCCeEEEEECCCC---------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883          146 FVAGFQASQIRIYDVERG---------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV  216 (498)
Q Consensus       146 la~~~~dg~i~vw~~~~~---------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~  216 (498)
                      +++|+....|.=+++.-.         ..+........|.++|++++.  ++.++|+|+.|-+|+|||+.......... 
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll-   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL-   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee-
Confidence            667777776666665422         122334566789999999998  68999999999999999998765433322 


Q ss_pred             cccccCccccccCCCCceecEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEE
Q 010883          217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS  294 (498)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  294 (498)
                                     .|.+.|+++.|.+.-.  .|++|+.||.|.+|+....+++..+.+|.+.|+.++.+ |.+.+-++
T Consensus        81 ---------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS~KLALs  144 (362)
T KOG0294|consen   81 ---------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH-PSGKLALS  144 (362)
T ss_pred             ---------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec-CCCceEEE
Confidence                           3677999999998765  89999999999999999999999999999999999997 88999999


Q ss_pred             eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccccee
Q 010883          295 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW  374 (498)
Q Consensus       295 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  374 (498)
                      .+.|+.+++||+-    .++....+. -...-+.+.|+|.|.+++.++.+ .|-+|.+.+.......             
T Consensus       145 Vg~D~~lr~WNLV----~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i-------------  205 (362)
T KOG0294|consen  145 VGGDQVLRTWNLV----RGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI-------------  205 (362)
T ss_pred             EcCCceeeeehhh----cCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh-------------
Confidence            9999999999996    444333332 12233448999999999988876 4889988763211110             


Q ss_pred             ecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeE
Q 010883          375 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS  454 (498)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~  454 (498)
                                           ...   ..+....|.     ++..|++|..|+.|.+||..+..+...+.+|...|.++.
T Consensus       206 ---------------------~~~---~r~l~~~~l-----~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~  256 (362)
T KOG0294|consen  206 ---------------------ENP---KRILCATFL-----DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA  256 (362)
T ss_pred             ---------------------hcc---ccceeeeec-----CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE
Confidence                                 000   111111111     688999999999999999999999999999999999998


Q ss_pred             E--cCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          455 W--HPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       455 ~--sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      +  .|++.+|+|++.||.|++||+......
T Consensus       257 ~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  257 SYTNPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             EEecCCceEEEEeccCceEEEEEccccccC
Confidence            4  466789999999999999999877443

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.7e-27  Score=226.91  Aligned_cols=230  Identities=13%  Similarity=0.181  Sum_probs=173.7

Q ss_pred             EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-----
Q 010883          194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK-----  267 (498)
Q Consensus       194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~-----  267 (498)
                      |+.++.|++|+.........                ..+|...|.+++|+|+ +.+|++|+.|+.|++||+.++.     
T Consensus        50 GG~~gvI~L~~~~r~~~v~~----------------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~  113 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIK----------------LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE  113 (568)
T ss_pred             CCceeEEEeeecCCCceEEE----------------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence            45567888888765432111                1268889999999996 7899999999999999997642     


Q ss_pred             ---eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883          268 ---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       268 ---~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                         ++..+.+|...|.+++|+|....+|++++.|++|++||++    .+..+..+. |...|.+++|+|+|.+|++++.|
T Consensus       114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~----tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D  188 (568)
T PTZ00420        114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE----NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG  188 (568)
T ss_pred             cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC----CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC
Confidence               3345778999999999985444566899999999999998    555555554 56789999999999999999999


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS  424 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  424 (498)
                      +.|+|||+++                                  +..+..+.+|...... ...+...|++++.+|++++
T Consensus       189 ~~IrIwD~Rs----------------------------------g~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG  233 (568)
T PTZ00420        189 KHMHIIDPRK----------------------------------QEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTG  233 (568)
T ss_pred             CEEEEEECCC----------------------------------CcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEE
Confidence            9999999998                                  3556667777643222 2223335667899999988


Q ss_pred             cCC----eEEEEECCC-CcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          425 HDS----CVYVYDLVS-GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       425 ~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .|+    .|+|||++. ++++..+.  .+.+.+......+++.++++|+.|+.|++|++..+
T Consensus       234 ~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        234 FSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             cCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            774    799999985 56665543  33344444444556889999999999999999765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=211.75  Aligned_cols=307  Identities=18%  Similarity=0.240  Sum_probs=234.4

Q ss_pred             ccccCCCCceEEEEEcCCC--CEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeE
Q 010883          125 WPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV  200 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg--~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i  200 (498)
                      ....-+..+|++++|+|..  +++|+|...|.|-+||+.+ .+..........|..+|.++.|+|. -..+++.|.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            4456789999999999976  4888899999999999953 2334455667788899999999994 4688899999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEeccCCCe
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDV  279 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~v  279 (498)
                      ++-|++++....+......              ...+.++.|+.+...++.+..=|...+||++++.. ...+.-|...|
T Consensus       260 R~~D~~~~i~e~v~s~~~d--------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI  325 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTD--------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI  325 (498)
T ss_pred             eeeeecchhhHHHhhcCcc--------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence            9999998876655554311              12678889998888888888888999999998765 55566788999


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      ++++++|....+|++++.|++++|||+|.......++.....|...|.+..|+|.+-.|++.+.|..|+|||..-.... 
T Consensus       326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-  404 (498)
T KOG4328|consen  326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-  404 (498)
T ss_pred             ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-
Confidence            9999999999999999999999999999776555455666779999999999999888999999999999998521110 


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                                                   ..+..++..... ..-.-..|...|.|+..++++|..-..|-|+|-..++.
T Consensus       405 -----------------------------~~p~~~I~Hn~~-t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~  454 (498)
T KOG4328|consen  405 -----------------------------DEPLGTIPHNNR-TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM  454 (498)
T ss_pred             -----------------------------CCccceeeccCc-ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence                                         011111111110 00011124446777999999999999999999988888


Q ss_pred             EEEeccCC-CCeeee-EEcCCCCeEEE-EeCCCcEEEecC
Q 010883          440 VAALKYHT-SPVRDC-SWHPSQPMLVS-SSWDGDVVRWEF  476 (498)
Q Consensus       440 ~~~~~~h~-~~v~~l-~~sp~~~~l~s-~~~Dg~i~iw~~  476 (498)
                      +..+.... ..|.++ .|+|-+..+++ ++.-|.|+||--
T Consensus       455 v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  455 VCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             eeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence            88765333 355554 79999884554 456788888854

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-28  Score=226.11  Aligned_cols=291  Identities=19%  Similarity=0.308  Sum_probs=229.6

Q ss_pred             CCCceE---EEEEcC-CCCEEEEEECCCeEEEEECCCCeEE--EE-EeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          130 TTSRAY---VSQFSA-DGSLFVAGFQASQIRIYDVERGWKI--QK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       130 h~~~v~---~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~--~~-~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      |...|.   .+..++ .+++|++||.||.|++|+.......  .. ......|...|+++...-+++.|+++|.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            344444   444544 5678999999999999998754221  11 2344678889999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCee--e--------EE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGSSDDCIYVYDLEANKL--S--------LR  271 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s~~g~~l~~g~~dg~i~vwd~~~~~~--~--------~~  271 (498)
                      |+...+......              ..+.|+..|.|+++ -++...+|+|+-|+.|.+||++++..  +        ..
T Consensus       100 W~~~~~~~~c~s--------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s  165 (735)
T KOG0308|consen  100 WNAHKDNTFCMS--------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS  165 (735)
T ss_pred             eecccCcchhHh--------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence            998766411111              12358889999999 77888999999999999999997722  2        22


Q ss_pred             Ee-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          272 IL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       272 ~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      +. ++...|.+++-+ +.+..|++|+..+.+++||.+    ..+.+..+.+|...|..+..++||..+++++.||+|++|
T Consensus       166 l~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  166 LGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW  240 (735)
T ss_pred             CCCCCccceeeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence            23 788899999998 778899999999999999999    888899999999999999999999999999999999999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY  430 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  430 (498)
                      |+..                                  .+++.++..|...      .|+...+|+-..+++|+.||.|+
T Consensus       241 dLgq----------------------------------QrCl~T~~vH~e~------VWaL~~~~sf~~vYsG~rd~~i~  280 (735)
T KOG0308|consen  241 DLGQ----------------------------------QRCLATYIVHKEG------VWALQSSPSFTHVYSGGRDGNIY  280 (735)
T ss_pred             eccc----------------------------------cceeeeEEeccCc------eEEEeeCCCcceEEecCCCCcEE
Confidence            9987                                  4677778777743      34445556778999999999999


Q ss_pred             EEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       431 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .=|+.+......+-....+|..+..+...+-+-+++.|+.|+-|.....
T Consensus       281 ~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  281 RTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             ecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence            9999885433333335567888888766665677888999999987543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.6e-27  Score=228.06  Aligned_cols=258  Identities=24%  Similarity=0.293  Sum_probs=212.7

Q ss_pred             cccCCCCCcc-ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE
Q 010883          117 RYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS  195 (498)
Q Consensus       117 ~~~~~~~~~~-l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s  195 (498)
                      +..+...... +.+|.+.|++++|..-+.+|++|+.|.+++|||..+|......   .+|...|.++..  ...++++|+
T Consensus       234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l---~gh~stv~~~~~--~~~~~~sgs  308 (537)
T KOG0274|consen  234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL---QGHTSSVRCLTI--DPFLLVSGS  308 (537)
T ss_pred             ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe---cCCCceEEEEEc--cCceEeecc
Confidence            3333333344 8899999999999988899999999999999999999776644   478888988877  456778889


Q ss_pred             CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc
Q 010883          196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH  275 (498)
Q Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  275 (498)
                      .|.+|++|++.++....+..                +|.++|.++..+  +.++++|+.|+.|.+||+.+++++..+.+|
T Consensus       309 ~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH  370 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH  370 (537)
T ss_pred             CCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC
Confidence            99999999999888766654                477899999997  779999999999999999999999999999


Q ss_pred             CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          276 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      ...|.++.+. .. ..+++|+.|++|++||++    .. +++..+.+|.+-+..+.+  .+++|++++.|++|++||...
T Consensus       371 ~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  371 TGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             cceEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeeccc
Confidence            9999999885 32 899999999999999998    66 799999999998877666  567999999999999999988


Q ss_pred             CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883          355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD  433 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd  433 (498)
                                                        ++.+..+.++ .......      .+  ....+++++.||.+++||
T Consensus       443 ----------------------------------~~~~~~~~~~~~~~v~~l------~~--~~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  443 ----------------------------------GECLRTLEGRHVGGVSAL------AL--GKEEILCSSDDGSVKLWD  480 (537)
T ss_pred             ----------------------------------CceeeeeccCCcccEEEe------ec--CcceEEEEecCCeeEEEe
Confidence                                              3566666663 2211111      11  136789999999999999


Q ss_pred             CCCCcEEEEeccCC
Q 010883          434 LVSGEQVAALKYHT  447 (498)
Q Consensus       434 ~~~~~~~~~~~~h~  447 (498)
                      +.+++.+..+-.+.
T Consensus       481 l~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  481 LRSGTLIRTLLSTD  494 (537)
T ss_pred             cccCchhhhhhhcc
Confidence            99999887774343

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.1e-26  Score=194.15  Aligned_cols=279  Identities=15%  Similarity=0.165  Sum_probs=214.3

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      ...|..+.|+|.++.|++++.||.+++|++.....    ...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence            67899999999999999999999999999987622    22234666999999987 55688999999999999998876


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                      ..+.                 .|..+|.|+.+++-...+++|+.|++|++||.........+ .....|.++..+   ++
T Consensus        88 ~~ig-----------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v~---g~  146 (323)
T KOG1036|consen   88 DQIG-----------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDVS---GN  146 (323)
T ss_pred             eeec-----------------cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEecc---CC
Confidence            4443                 36669999999997778999999999999999875555444 334478888764   77


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      .|++|+.|..|.+||++......  ...-....-.+.++++-|++.-+++++-||.|.+=.+.......           
T Consensus       147 ~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~-----------  213 (323)
T KOG1036|consen  147 RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ-----------  213 (323)
T ss_pred             EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh-----------
Confidence            89999999999999998443221  11112234568899999998889999999999887666531111           


Q ss_pred             cceeecCCcCcccccCCCCceEEEEccCce---eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVATYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT  447 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~  447 (498)
                                         ..-..|+.|..   ...+.-...+++|+|--..+++|+.||.|.+||+.+.+.+..+....
T Consensus       214 -------------------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~  274 (323)
T KOG1036|consen  214 -------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE  274 (323)
T ss_pred             -------------------hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence                               11223333332   12233334455666677889999999999999999999999998777


Q ss_pred             CCeeeeEEcCCCCeEEEEeC
Q 010883          448 SPVRDCSWHPSQPMLVSSSW  467 (498)
Q Consensus       448 ~~v~~l~~sp~~~~l~s~~~  467 (498)
                      ..|.+++|+.+|..||.++.
T Consensus       275 ~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  275 TSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CceEEEEeccCCCeEEEEec
Confidence            88999999999999999874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.2e-27  Score=210.05  Aligned_cols=295  Identities=12%  Similarity=0.160  Sum_probs=229.8

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeEEEEECCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~  207 (498)
                      ...+.|+++.|+|...+|++|+.|++++||.++.. .-..+....-...+|.+.+|.|+|. .+++++.....+.||+.+
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            45678999999999999999999999999998743 2122222223345899999999998 888999999999999998


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      .+...+..+....+             ..+.....++++++|+..+..|.|.+....+++.+..+ .-.+.|..++|+ .
T Consensus       290 ak~~k~~~~~g~e~-------------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fs-S  354 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEE-------------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFS-S  354 (514)
T ss_pred             cccccccCCCCccc-------------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEEe-c
Confidence            88765554332221             15677888999999999999999999999999988877 456889999998 7


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc-cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                      ++..|++++.+|.|.+||++    ...++..+..... .-++++.++++.+||+|+..|.|.|||..+......      
T Consensus       355 dsk~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~------  424 (514)
T KOG2055|consen  355 DSKELLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN------  424 (514)
T ss_pred             CCcEEEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC------
Confidence            88899999999999999998    6677777764322 235678889999999999999999999776221110      


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--CCeEEEEECCCCcEEEEec
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~  444 (498)
                                            .+++..+..      +...+.++.|++|..+||.+|.  +..+++-.+.+......+.
T Consensus       425 ----------------------PkPik~~dN------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP  476 (514)
T KOG2055|consen  425 ----------------------PKPIKTVDN------LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP  476 (514)
T ss_pred             ----------------------CCchhhhhh------hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC
Confidence                                  123333222      2233445578889999998876  6789999988877666664


Q ss_pred             c---CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          445 Y---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       445 ~---h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      .   .-+.|+|++|+|.+.+||.|..+|.|.+|.+.
T Consensus       477 ~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  477 TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            3   23569999999999999999999999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=8.3e-28  Score=214.69  Aligned_cols=285  Identities=18%  Similarity=0.241  Sum_probs=229.5

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      -.|..-|.++.+|...+.+.||+. |.|+|||+...   ..+..+ ........|.++.+.|||+.|++|+.-.++.|||
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL-dcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc-cccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            368888999999999999999975 57999999753   112221 1122334689999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      +..........+....              -.+.+++.+||.+..++++.||.|.|||+.+...++.+.+|.+.+.||..
T Consensus       494 LAapTprikaeltssa--------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi  559 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSA--------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  559 (705)
T ss_pred             ccCCCcchhhhcCCcc--------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence            9876543222222111              15788999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      + ++|..|-+|+-|.+|+.||++    .+..+.... ....|.++...|++.++++|-.++.+.|.......        
T Consensus       560 s-~dGtklWTGGlDntvRcWDlr----egrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~--------  625 (705)
T KOG0639|consen  560 S-KDGTKLWTGGLDNTVRCWDLR----EGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE--------  625 (705)
T ss_pred             c-CCCceeecCCCccceeehhhh----hhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc--------
Confidence            8 889999999999999999998    555544332 35779999999999999999999988887766521        


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  444 (498)
                                                 ...+..|.      .|+.++.|++-|+++++.+.|+.+..|...-|..+...+
T Consensus       626 ---------------------------kyqlhlhe------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk  672 (705)
T KOG0639|consen  626 ---------------------------KYQLHLHE------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  672 (705)
T ss_pred             ---------------------------ceeecccc------cEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence                                       11122222      344555666789999999999999999999999888876


Q ss_pred             cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                       ..++|.++.+|.|.++++||+.|....+|.+
T Consensus       673 -E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  673 -ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             -ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence             5678999999999999999999998888875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4e-28  Score=197.62  Aligned_cols=257  Identities=17%  Similarity=0.142  Sum_probs=205.2

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV  203 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iw  203 (498)
                      .-.+|.+.|..+...--|++|||++.|++|+|+.+.++.....+..+.+|.++|..++|..  -|.+||+++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            3467999999999999999999999999999999988766566677889999999999976  79999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-e--eeEEEeccCCC
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-K--LSLRILAHTSD  278 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~-~--~~~~~~~~~~~  278 (498)
                      .-.+++........              .|...|++++|-|.  |-.|++++.||.|.|.+.... .  .......|.-.
T Consensus        86 ke~~g~w~k~~e~~--------------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G  151 (299)
T KOG1332|consen   86 KEENGRWTKAYEHA--------------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG  151 (299)
T ss_pred             ecCCCchhhhhhhh--------------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence            99888654433322              47779999999984  568999999999999988765 2  22334589999


Q ss_pred             eeEEEEeCCC--C-----------CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC----CEEEEE
Q 010883          279 VNTVCFGDES--G-----------HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYLISN  341 (498)
Q Consensus       279 v~~~~~~~~~--~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----~~l~s~  341 (498)
                      |++++|.|..  +           ..|++|+.|..|+||+....  .......+.+|.+.|+.++|.|.-    .+|+++
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence            9999998642  2           46999999999999998733  334555689999999999999963    579999


Q ss_pred             eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883          342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  421 (498)
                      +.||++.||..+........                            ..+         .......++..||..|++|+
T Consensus       230 SqDg~viIwt~~~e~e~wk~----------------------------tll---------~~f~~~~w~vSWS~sGn~La  272 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKK----------------------------TLL---------EEFPDVVWRVSWSLSGNILA  272 (299)
T ss_pred             cCCCcEEEEEecCccCcccc----------------------------ccc---------ccCCcceEEEEEeccccEEE
Confidence            99999999998743221110                            111         11223456667888999999


Q ss_pred             EEecCCeEEEEECC
Q 010883          422 TGSHDSCVYVYDLV  435 (498)
Q Consensus       422 ~g~~dg~i~iwd~~  435 (498)
                      +++.|+.|.+|.-.
T Consensus       273 Vs~GdNkvtlwke~  286 (299)
T KOG1332|consen  273 VSGGDNKVTLWKEN  286 (299)
T ss_pred             EecCCcEEEEEEeC
Confidence            99999999999744

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.9e-27  Score=230.51  Aligned_cols=264  Identities=18%  Similarity=0.212  Sum_probs=209.3

Q ss_pred             CCCceeEEEEEeCCCCCeEEEEE--CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      .++...|.++..+||+..+++|+  .|+.++||+.+.--..    .......+.........|.+.|.|+.|+|||++||
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccch----hhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            44556799999999999999999  8999999997531100    00000001111222346888999999999999999


Q ss_pred             EEeCCCeEEEEECCC------------------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883          251 AGSSDDCIYVYDLEA------------------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK  312 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  312 (498)
                      +|+.|+.|.||+...                  .+.+..+.+|...|..++|+ |++.+|++++.|++|.+|+.+    +
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~----t  160 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAK----T  160 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccc----c
Confidence            999999999998772                  13567788999999999998 699999999999999999998    7


Q ss_pred             CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       313 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      .+.+..+.+|.+.|..+.|.|-|++|++-+.|++|++|++.+.                                  +..
T Consensus       161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw----------------------------------~i~  206 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW----------------------------------GIE  206 (942)
T ss_pred             ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc----------------------------------eee
Confidence            7899999999999999999999999999999999999997652                                  333


Q ss_pred             EEEccCceeEEEEEEEeccccCCCCcEEEEEec----CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCC------C---
Q 010883          393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS------Q---  459 (498)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~------~---  459 (498)
                      +.+..+-...........+.|||||.+|++...    -.++.|.+-.+.+.-..|-+|..++.++.|+|.      .   
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence            334333332333445567789999999998744    347889988888888888999999999999982      1   


Q ss_pred             ----C----eEEEEeCCCcEEEecCCCC
Q 010883          460 ----P----MLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       460 ----~----~l~s~~~Dg~i~iw~~~~~  479 (498)
                          .    .+|+|+.|++|.||.....
T Consensus       287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~  314 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQDRSLSVWNTALP  314 (942)
T ss_pred             ccCCCcceEEEEEecCCccEEEEecCCC
Confidence                1    6889999999999998443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6e-27  Score=217.03  Aligned_cols=262  Identities=19%  Similarity=0.220  Sum_probs=213.5

Q ss_pred             ccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE
Q 010883          112 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL  191 (498)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  191 (498)
                      +..++.............+...|+++.|+++|++||+|..+|.|.|||..+.+.+....  ..|...|-+++|.  +..+
T Consensus       198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~--~~h~~rvg~laW~--~~~l  273 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR--GSHASRVGSLAWN--SSVL  273 (484)
T ss_pred             eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc--CCcCceeEEEecc--CceE
Confidence            34444444444333444458999999999999999999999999999998875554332  2278899999997  7788


Q ss_pred             EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883          192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR  271 (498)
Q Consensus       192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~  271 (498)
                      .+|+.++.|..+|+...+.... .              ..+|...|..++|++|+.+||+|+.|+.+.|||....++...
T Consensus       274 ssGsr~~~I~~~dvR~~~~~~~-~--------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~  338 (484)
T KOG0305|consen  274 SSGSRDGKILNHDVRISQHVVS-T--------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT  338 (484)
T ss_pred             EEecCCCcEEEEEEecchhhhh-h--------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence            9999999999999987664333 1              126888999999999999999999999999999988889999


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEee--CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE--eCCCcE
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAI  347 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~--~~dg~i  347 (498)
                      +..|.+.|..++|+|....+||+|+  .|+.|++||..    .+..+.... ....|..|.|++..+.|+++  ..++.|
T Consensus       339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i  413 (484)
T KOG0305|consen  339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI  413 (484)
T ss_pred             EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence            9999999999999999999999976  68999999997    666666554 45789999999998777764  356789


Q ss_pred             EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883          348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS  427 (498)
Q Consensus       348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  427 (498)
                      .||+..++                                  ..+..+.+|....      ...++||||..+++|+.|.
T Consensus       414 ~lw~~ps~----------------------------------~~~~~l~gH~~RV------l~la~SPdg~~i~t~a~DE  453 (484)
T KOG0305|consen  414 TLWKYPSM----------------------------------KLVAELLGHTSRV------LYLALSPDGETIVTGAADE  453 (484)
T ss_pred             EEEecccc----------------------------------ceeeeecCCccee------EEEEECCCCCEEEEecccC
Confidence            99999873                                  5667778887432      2336778999999999999


Q ss_pred             eEEEEECCCC
Q 010883          428 CVYVYDLVSG  437 (498)
Q Consensus       428 ~i~iwd~~~~  437 (498)
                      ++++|++-..
T Consensus       454 Tlrfw~~f~~  463 (484)
T KOG0305|consen  454 TLRFWNLFDE  463 (484)
T ss_pred             cEEeccccCC
Confidence            9999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.1e-26  Score=195.10  Aligned_cols=247  Identities=19%  Similarity=0.272  Sum_probs=185.2

Q ss_pred             CCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          173 KSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ......|.+++|||. ..+++.+|.|++||+|+++.. ....  +             ....|.++|.+++|+.||..++
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--k-------------a~~~~~~PvL~v~WsddgskVf   88 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--K-------------AQQSHDGPVLDVCWSDDGSKVF   88 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--h-------------hhhccCCCeEEEEEccCCceEE
Confidence            344558999999994 456668899999999999863 3322  1             1124677999999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      +|+.|+.+++||+.+++. ..+..|.++|.++.|-+.. -..|++||.|.+|+.||.|    ...++.++. ..+.+.++
T Consensus        89 ~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R----~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   89 SGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR----SSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             eeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccC----CCCeeeeee-ccceeeeh
Confidence            999999999999999954 6677999999999997332 2489999999999999999    777777766 34667776


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      ..-  ..+++++..++.|.+|+++.........                                   .+......++. 
T Consensus       163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~~-----------------------------------~SpLk~Q~R~v-  204 (347)
T KOG0647|consen  163 DVL--YPMAVVATAERHIAVYNLENPPTEFKRI-----------------------------------ESPLKWQTRCV-  204 (347)
T ss_pred             hcc--CceeEEEecCCcEEEEEcCCCcchhhhh-----------------------------------cCcccceeeEE-
Confidence            653  3578889999999999998743221110                                   00111112221 


Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCC--cEEEEeccCC---------CCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHT---------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~---------~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                        +.-.|....+.|+-+|.+.|..+..+  +.-..|+.|.         ..|++++|+|....|+|+|.||++.+||-+.
T Consensus       205 --a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  205 --ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             --EEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence              11125555699999999999999886  4445566665         2588899999999999999999999999765


Q ss_pred             CC
Q 010883          479 NG  480 (498)
Q Consensus       479 ~~  480 (498)
                      ..
T Consensus       283 r~  284 (347)
T KOG0647|consen  283 RT  284 (347)
T ss_pred             hh
Confidence            43

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=212.35  Aligned_cols=242  Identities=21%  Similarity=0.327  Sum_probs=191.9

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ..|++++|+|...+=++....-.+.||+..+......+.-                ....+.++.|..||++|++|...|
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr----------------Fk~~v~s~~fR~DG~LlaaGD~sG   90 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR----------------FKDVVYSVDFRSDGRLLAAGDESG   90 (487)
T ss_pred             CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh----------------hccceeEEEeecCCeEEEccCCcC
Confidence            3799999999665433333346799999877655432221                122699999999999999999999


Q ss_pred             eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-C
Q 010883          257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-G  335 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~  335 (498)
                      .|+|+|+.+...++.+.+|+.+|..+.|+|.++..|++|++|+.+++||+.    .......+.+|++.|.+.+|+|- +
T Consensus        91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s----~a~v~~~l~~htDYVR~g~~~~~~~  166 (487)
T KOG0310|consen   91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS----TAYVQAELSGHTDYVRCGDISPAND  166 (487)
T ss_pred             cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC----CcEEEEEecCCcceeEeeccccCCC
Confidence            999999887777888899999999999998899999999999999999997    55556689999999999999995 4


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883          336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST  415 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  415 (498)
                      ..+++|+.||.|++||++...                                 ..+..+.......   ..    .+-|
T Consensus       167 hivvtGsYDg~vrl~DtR~~~---------------------------------~~v~elnhg~pVe---~v----l~lp  206 (487)
T KOG0310|consen  167 HIVVTGSYDGKVRLWDTRSLT---------------------------------SRVVELNHGCPVE---SV----LALP  206 (487)
T ss_pred             eEEEecCCCceEEEEEeccCC---------------------------------ceeEEecCCCcee---eE----EEcC
Confidence            578999999999999999842                                 2334444332222   22    2334


Q ss_pred             CCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .|..+++++. ..|+|||+.+|. .+.....|...|+|+++..++..|++++-|+.|++||+.+-
T Consensus       207 sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  207 SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            7888888865 469999999654 45555569999999999999999999999999999996543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1e-26  Score=216.09  Aligned_cols=202  Identities=17%  Similarity=0.203  Sum_probs=149.1

Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC---CCCEEEEEeCCCcEEEEeCC
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~~~dg~i~iwd~~  353 (498)
                      ..+.+++.+ |++++|++|..-|+++||++.    .......+..|...|.|+.++.   ..++|++++.|.-|.|||+.
T Consensus       460 ~G~R~~~vS-p~gqhLAsGDr~GnlrVy~Lq----~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  460 FGFRALAVS-PDGQHLASGDRGGNLRVYDLQ----ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             cceEEEEEC-CCcceecccCccCceEEEEeh----hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            458999998 899999999999999999997    6667778889999999999985   34789999999999999998


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEE-----------EEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA-----------TYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      ..-........+......+++.....+-+.+....++.+.           .+..|.... .....+.++..|..+++++
T Consensus       535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~-~ktTlYDm~Vdp~~k~v~t  613 (1080)
T KOG1408|consen  535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL-SKTTLYDMAVDPTSKLVVT  613 (1080)
T ss_pred             cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc-ccceEEEeeeCCCcceEEE
Confidence            7544433333333333333333322222333333222221           111111111 0112355667788999999


Q ss_pred             EecCCeEEEEECCCCcEEEEec---cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          423 GSHDSCVYVYDLVSGEQVAALK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       423 g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      ++.|..|+|||+.+|+..+.|+   +|.+....+...|.|-|||+...|.++.++|+..++....
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            9999999999999999999997   4678888999999999999999999999999999886644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=6e-27  Score=192.60  Aligned_cols=253  Identities=17%  Similarity=0.157  Sum_probs=206.4

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGREL  249 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l  249 (498)
                      ...+|...|.+++|+-+|..|++|+.|+++.+|+++..+......              ..+|.+.|-.++|+| ....|
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~--------------~~gh~~svdql~w~~~~~d~~   80 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV--------------YRGHTDSVDQLCWDPKHPDLF   80 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc--------------ccCCCcchhhheeCCCCCcce
Confidence            345677789999999999999999999999999998764322211              236888899999998 55689


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      ++++.|.+|++||+.++++...+...... .-++|+ |+++++++++.|..|.+.|.+    +.+.....+ ..-.+.-+
T Consensus        81 atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~ws-p~g~~~~~~~kdD~it~id~r----~~~~~~~~~-~~~e~ne~  153 (313)
T KOG1407|consen   81 ATASGDKTIRIWDIRSGKCTARIETKGEN-INITWS-PDGEYIAVGNKDDRITFIDAR----TYKIVNEEQ-FKFEVNEI  153 (313)
T ss_pred             EEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEc-CCCCEEEEecCcccEEEEEec----ccceeehhc-ccceeeee
Confidence            99999999999999999999888655444 457887 788999999999999999998    555554443 34557778


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      .|+.++.+++.....|.|.|......                                  +++..++.|.      .-++
T Consensus       154 ~w~~~nd~Fflt~GlG~v~ILsypsL----------------------------------kpv~si~AH~------snCi  193 (313)
T KOG1407|consen  154 SWNNSNDLFFLTNGLGCVEILSYPSL----------------------------------KPVQSIKAHP------SNCI  193 (313)
T ss_pred             eecCCCCEEEEecCCceEEEEecccc----------------------------------ccccccccCC------cceE
Confidence            89888888877777899999887653                                  5666777776      2234


Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      +..|+|+|+++|+|+.|..+-+||+...-++..+..+.-+|+.++||.||++||+++.|-.|-|=++.++.....
T Consensus       194 cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e  268 (313)
T KOG1407|consen  194 CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE  268 (313)
T ss_pred             EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE
Confidence            457888999999999999999999999989999999999999999999999999999999998877777765443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=195.54  Aligned_cols=290  Identities=21%  Similarity=0.313  Sum_probs=211.9

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  213 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~  213 (498)
                      ..|+.|++.|.+||+|+.||.|.|||+.+.. +.+  ...+|..+|++++||+||+.|+++|.|..|.+||+..|.+...
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-hhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            7899999999999999999999999999853 332  3457777999999999999999999999999999999987666


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEec--cCC----CeeEEEEeC
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILA--HTS----DVNTVCFGD  286 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~----~v~~~~~~~  286 (498)
                      ..+..                 +|+.+.|+|-.+ ..++.-.+..-.+.++..++.  ++..  ..+    ...+..| +
T Consensus       103 irf~s-----------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~f-d  162 (405)
T KOG1273|consen  103 IRFDS-----------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVF-D  162 (405)
T ss_pred             EEccC-----------------ccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccc-c
Confidence            55433                 899999999433 333333344455555554322  2211  111    1122345 4


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF  365 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  365 (498)
                      +.|+++++|...|.+.++|..    +.+++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++..........  
T Consensus       163 r~g~yIitGtsKGkllv~~a~----t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e--  236 (405)
T KOG1273|consen  163 RRGKYIITGTSKGKLLVYDAE----TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE--  236 (405)
T ss_pred             CCCCEEEEecCcceEEEEecc----hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC--
Confidence            889999999999999999998    667777666555 7889999999999999999999999999985322110000  


Q ss_pred             ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCcEEEEec
Q 010883          366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~  444 (498)
                                             -.+...+..--....-..|    +||.+|.|+++|+. ...++||....|.+++.+.
T Consensus       237 -----------------------~e~~~K~qDvVNk~~Wk~c----cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh  289 (405)
T KOG1273|consen  237 -----------------------VEPEHKLQDVVNKLQWKKC----CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH  289 (405)
T ss_pred             -----------------------cChhHHHHHHHhhhhhhhe----eecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence                                   0000000000000011122    56679999998875 4679999999999999998


Q ss_pred             cCC-CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          445 YHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       445 ~h~-~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      |.. ....++.|+|-.+.+++- ..|.|+||.....+
T Consensus       290 G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  290 GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             CCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence            877 567899999999998888 67999999876543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=9.8e-27  Score=204.35  Aligned_cols=263  Identities=21%  Similarity=0.253  Sum_probs=209.2

Q ss_pred             ccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE
Q 010883          112 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL  191 (498)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  191 (498)
                      ..++.+....+-...+.||.-.|+.+.|+|+...+++++.|..|+||......   .......|..+|+.+..+|.|.||
T Consensus       242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYl  318 (506)
T KOG0289|consen  242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYL  318 (506)
T ss_pred             ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEE
Confidence            34444554555567889999999999999999999999999999999987653   333456788899999999999999


Q ss_pred             EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883          192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR  271 (498)
Q Consensus       192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~  271 (498)
                      ++++.|++..+.|+.++..........              ..-.+++.+|+|||-+|.+|..||.|+|||+.++..+..
T Consensus       319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~--------------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~  384 (506)
T KOG0289|consen  319 LSASNDGTWAFSDISSGSQLTVVSDET--------------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAK  384 (506)
T ss_pred             EEecCCceEEEEEccCCcEEEEEeecc--------------ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccccc
Confidence            999999999999999998755443221              112699999999999999999999999999999999999


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-cccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      +.+|.++|..++|+ .+|.+|+++++|+.|++||+|    +.+...++... ...+.++.|.+.|.+|+.++.|=+|+++
T Consensus       385 Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLR----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  385 FPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLR----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             CCCCCCceeEEEec-cCceEEEEEecCCeEEEEEeh----hhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence            99999999999998 999999999999999999999    44444444432 2369999999999999999887666666


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY  430 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  430 (498)
                      +-.+.+                                ...+..+..|....+.      ..|..+.+++++++.|..++
T Consensus       460 ~k~~k~--------------------------------W~~~~~~~~~sg~st~------v~Fg~~aq~l~s~smd~~l~  501 (506)
T KOG0289|consen  460 KKKTKS--------------------------------WTEIKELADHSGLSTG------VRFGEHAQYLASTSMDAILR  501 (506)
T ss_pred             eccccc--------------------------------ceeeehhhhcccccce------eeecccceEEeeccchhheE
Confidence            644321                                2344444444422222      24555788999999999988


Q ss_pred             EEEC
Q 010883          431 VYDL  434 (498)
Q Consensus       431 iwd~  434 (498)
                      ++.+
T Consensus       502 ~~a~  505 (506)
T KOG0289|consen  502 LYAL  505 (506)
T ss_pred             Eeec
Confidence            8754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.3e-26  Score=191.58  Aligned_cols=265  Identities=16%  Similarity=0.192  Sum_probs=201.9

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC--eEEEEECCCe
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPI  199 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~s~d~~  199 (498)
                      .+.+.+..|.++|++++.  +|.++|+|+.|-+|+|||+.+...+..+   -.|.+.|+++.|.+.-.  .|++|+.||.
T Consensus        34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l---l~HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL---LSHAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce---eccccceEEEEecCCcchhheeeecCCCc
Confidence            446788999999999999  5799999999999999999987555544   35677999999999775  9999999999


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      |.+|+...-.....++                +|.+.|+.++.+|.|++-++.+.|+.+++||+-+++.-..+. -....
T Consensus       109 i~iw~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~a  171 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKA  171 (362)
T ss_pred             EEEEEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcc
Confidence            9999998775544433                577889999999999999999999999999999887654443 22233


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      +.+.|+ +.|.+++.+..+ .|-+|.+.    .......+.. ...+.++.|. ++..|++|+.|+.|.+||...     
T Consensus       172 t~v~w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-----  238 (362)
T KOG0294|consen  172 TLVSWS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS-----  238 (362)
T ss_pred             eeeEEc-CCCCEEEEEecc-EEEEEecc----cHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC-----
Confidence            459998 778877777654 68889886    3333333332 2446666665 567899999999999999886     


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC--
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--  437 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--  437 (498)
                                                   ..+...+.+|.....-+.....+    ++.+|++++.||.|+|||+...  
T Consensus       239 -----------------------------~~~~~~~~AH~~RVK~i~~~~~~----~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  239 -----------------------------DTPLTEFLAHENRVKDIASYTNP----EHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             -----------------------------CccceeeecchhheeeeEEEecC----CceEEEEeccCceEEEEEcccccc
Confidence                                         25566677777555444433333    6899999999999999999876  


Q ss_pred             ---cEEEEeccCCCCeeeeEE
Q 010883          438 ---EQVAALKYHTSPVRDCSW  455 (498)
Q Consensus       438 ---~~~~~~~~h~~~v~~l~~  455 (498)
                         +++..+.. ...++|+..
T Consensus       286 ~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  286 KRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             CCcceeEEeec-CCccceeee
Confidence               44555543 445566554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.7e-27  Score=222.03  Aligned_cols=295  Identities=19%  Similarity=0.279  Sum_probs=223.1

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE----eecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEEC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----ILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~----~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~  205 (498)
                      +..+.++...++-..++.++.. .+.||.+.........    .........+.++.|.. +.++||+++..|.|.+||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            4567778888998888888654 6888887653211111    11122233567788875 5689999999999999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      ............             ..|...+.++.|++ ...+|++|+.||.|++||++..+....+.+....|+.+.|
T Consensus       118 nk~~rnk~l~~f-------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f  184 (839)
T KOG0269|consen  118 NKSIRNKLLTVF-------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF  184 (839)
T ss_pred             CccccchhhhHh-------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence            763111111111             14777999999998 4568899999999999999999988888888899999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      +|..++.|+++.+.|.+++||+|   ....+...+.+|.++|.++.|+|++.+||+|+.|+.|+|||......       
T Consensus       185 sp~~~~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-------  254 (839)
T KOG0269|consen  185 SPGYGNKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-------  254 (839)
T ss_pred             ccCCCceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------
Confidence            99999999999999999999998   34567788899999999999999999999999999999999986432       


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--CCeEEEEECCCC-cEEE
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSG-EQVA  441 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~-~~~~  441 (498)
                                               ..+.++..   ...+.++.|.|+.   ...|++++.  |-.|+|||++.. -+..
T Consensus       255 -------------------------~~~~tInT---iapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~  303 (839)
T KOG0269|consen  255 -------------------------KPKHTINT---IAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYA  303 (839)
T ss_pred             -------------------------cceeEEee---cceeeeeeeccCc---cchhhhhhccccceEEEEeeccccccce
Confidence                                     22222221   1234556677763   356666654  789999999764 3567


Q ss_pred             EeccCCCCeeeeEEcCC-CCeEEEEeCCCcEEEecCCCCC
Q 010883          442 ALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~-~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ++..|...++.++|... ...|.+++.||+|..-.+.+..
T Consensus       304 t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  304 TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             eeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            78889999999999763 3489999999998766555443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.2e-27  Score=208.28  Aligned_cols=361  Identities=16%  Similarity=0.235  Sum_probs=261.9

Q ss_pred             ccHHHhhhccccccccchhhhhhhhcccccccccccccccccCCcccccCC-CCcchhHHHHHHhhcccCCccccccc-c
Q 010883            2 KDEEALRSCIASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKK-PLSALDHEIAQLTKLKSEPKEHFSKE-V   79 (498)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~-~   79 (498)
                      |+.+.||+.++ ...|.+     ....++++..+++.+..+.-.+..++.. ....|++....++++...+.+..... +
T Consensus       143 RLr~~F~k~~~-~PkWA~-----~~~~~~~~DDe~e~s~d~lL~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I  216 (514)
T KOG2055|consen  143 RLREQFQKRYP-VPKWAK-----KASGKDSEDDEEEGSLDDLLKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGI  216 (514)
T ss_pred             HHHHHHHHhcC-CCcccc-----cccccccccccccccHHHHHHhhhcccccccccCCCceeeeEeecccccCCcCcCCc
Confidence            56788888888 555544     1112333333333332222224555555 77789999999999998888766554 5


Q ss_pred             CCCCccccchhhhhhhhhcCCCCCccccccccccccccccCCCCCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEE
Q 010883           80 PGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIY  158 (498)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw  158 (498)
                      ....+++...+.+.+|....+    ++-..+..       .....+.+.--..+|.++.|.|+|. .+++++....++.|
T Consensus       217 ~sv~FHp~~plllvaG~d~~l----rifqvDGk-------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy  285 (514)
T KOG2055|consen  217 TSVQFHPTAPLLLVAGLDGTL----RIFQVDGK-------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY  285 (514)
T ss_pred             eEEEecCCCceEEEecCCCcE----EEEEecCc-------cChhheeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence            567778887777777764443    22222211       2223455566688999999999998 89999999999999


Q ss_pred             ECCCCeEEEEEeecCCC-ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecE
Q 010883          159 DVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI  237 (498)
Q Consensus       159 ~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  237 (498)
                      |+.+.+. .++....++ ...+.....+|++++|+..+..|.|.+....+++.+..+++..                 .|
T Consensus       286 Dle~ak~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG-----------------~v  347 (514)
T KOG2055|consen  286 DLETAKV-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG-----------------VV  347 (514)
T ss_pred             ecccccc-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc-----------------EE
Confidence            9998743 333333333 2357788899999999999999999999999988877666543                 79


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC-CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccc--cCCCc
Q 010883          238 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL--NVKGK  314 (498)
Q Consensus       238 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~  314 (498)
                      ..++|+.|++.|++.+.+|.|++||++...++.++....+ .-++++.+ .++.+||+|+..|.|.|||....  ....+
T Consensus       348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCC
Confidence            9999999999999999999999999999998888753322 23566766 78899999999999999996522  23567


Q ss_pred             eeEEeccccccEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          315 PAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      ++..+......|+++.|++|.+.|+.++.  +..+++-.+.+.                                     
T Consensus       427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-------------------------------------  469 (514)
T KOG2055|consen  427 PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-------------------------------------  469 (514)
T ss_pred             chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-------------------------------------
Confidence            78888888899999999999999987764  567888776552                                     


Q ss_pred             EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                      .+|..-......+....+++|||.+.++|.|..+|.|.+|.+.
T Consensus       470 TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  470 TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            1222222222333444566899999999999999999999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.1e-25  Score=178.04  Aligned_cols=260  Identities=19%  Similarity=0.283  Sum_probs=195.3

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCc----cccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL----DFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      ..|.+++|+|.|.+.++|+...+++|-....-.     .....++..    .........|.+.|.|.+|+|+|.+|++|
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~-----~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg  107 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI-----DLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG  107 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEcccccc-----CcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence            379999999999999999999999887543211     111111111    11122344688999999999999999999


Q ss_pred             eCCCeEEEEECCCCee-----eEEEeccCCCeeEEEEeC---CCCCEEEEee-CCCeEEEEcCccccCCCceeEEecccc
Q 010883          253 SSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCFGD---ESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHL  323 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~---~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~  323 (498)
                      +.|..|++.-++...+     ...+.-|.+.|..++|.+   ..+.+|++++ .|..|++-|..    .++....+.+|.
T Consensus       108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~----~g~~~~a~sght  183 (350)
T KOG0641|consen  108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG----RGQGFHALSGHT  183 (350)
T ss_pred             CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC----CCCcceeecCCc
Confidence            9999999987765432     245667999999999972   1244566554 35566666665    788899999999


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      +.|.++- +=++-++++|+.|.+|++||++-...                                  +.++........
T Consensus       184 ghilaly-swn~~m~~sgsqdktirfwdlrv~~~----------------------------------v~~l~~~~~~~g  228 (350)
T KOG0641|consen  184 GHILALY-SWNGAMFASGSQDKTIRFWDLRVNSC----------------------------------VNTLDNDFHDGG  228 (350)
T ss_pred             ccEEEEE-EecCcEEEccCCCceEEEEeeeccce----------------------------------eeeccCcccCCC
Confidence            9998874 33678999999999999999997432                                  222221110000


Q ss_pred             -EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          404 -LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       404 -~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                       -.....+.+..|.|++|++|-.|....+||++.++.++.+..|...|.++.|+|...+|.+++.|..|++=|+.+.-
T Consensus       229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence             01122334667789999999999999999999999999999999999999999999999999999999999998653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=3.1e-26  Score=210.48  Aligned_cols=297  Identities=22%  Similarity=0.263  Sum_probs=216.5

Q ss_pred             EEEEEcCC---CCEEEEEECCCeEEEEECCCCeEE---EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          135 YVSQFSAD---GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       135 ~~~~~s~d---g~~la~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      ++..|++.   ..+||.+..||.|.++|.....--   ..+.....|...|.++.|.|....|++++.|.++++||++++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            34566653   358999999999999998753111   123455678889999999997778999999999999999998


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee-------------------
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-------------------  268 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~-------------------  268 (498)
                      ++.....              ..||.+.|.+++|.|+. ..|++|+.||.|.|||+.....                   
T Consensus       133 ~l~G~~~--------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  133 RLVGGRL--------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             eeeccee--------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            8755431              12788999999999955 5788999999999999864320                   


Q ss_pred             --------eEEEeccCCC----eeEEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCC--cee--EEeccc---cccEEE
Q 010883          269 --------SLRILAHTSD----VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKG--KPA--GVLMGH---LEGITF  328 (498)
Q Consensus       269 --------~~~~~~~~~~----v~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~--~~~--~~~~~~---~~~v~~  328 (498)
                              +.....+...    |+.+.|  .|+..|++++. |+.|+|||++......  .+.  ..+..|   .-++++
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n  276 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN  276 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence                    0111123333    455555  57778888887 9999999998432211  111  122223   345778


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883          329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH  408 (498)
Q Consensus       329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (498)
                      +.....|.+|.+.+.|+.|++|++.....                                .++..+.++......+.. 
T Consensus       277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~--------------------------------sP~~~~sg~~~~sf~vks-  323 (720)
T KOG0321|consen  277 LILDSSGTYLFASCTDNSIYFYNMRSLSI--------------------------------SPVAEFSGKLNSSFYVKS-  323 (720)
T ss_pred             EEecCCCCeEEEEecCCcEEEEeccccCc--------------------------------CchhhccCcccceeeeee-
Confidence            88888889999999999999999998543                                333444444432222222 


Q ss_pred             eccccCCCCcEEEEEecCCeEEEEECCCCcE-EEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCCCC
Q 010883          409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                         ..+||+.+|++|+.|...++|.+.+.+. ...+.+|.-.|++++|.|..- -++|+++|..++||++..+.+..
T Consensus       324 ---~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  324 ---ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             ---ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence               4577999999999999999999988654 566779999999999998543 57888999999999997766554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=6.3e-26  Score=206.93  Aligned_cols=308  Identities=19%  Similarity=0.226  Sum_probs=227.4

Q ss_pred             cccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC--eEEEE
Q 010883          117 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYA  194 (498)
Q Consensus       117 ~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~  194 (498)
                      +.+|..+...+.+|++.|.|+...|.|.+||+|+.||+|+||.+.+|.++.......    .|.+++|+|.++  .||++
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEE
Confidence            445777778889999999999999999999999999999999999998887764432    699999999775  44444


Q ss_pred             ECCCeEEEEECCCCceeccccccc--------ccc---Cccccc----------cCCCCceecEEEEEEcCCCCEEEEEe
Q 010883          195 SMSPIVHIVDVGSGTMESLANVTE--------IHD---GLDFSA----------ADDGGYSFGIFSLKFSTDGRELVAGS  253 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~~--------~~~---~~~~~~----------~~~~~h~~~i~~~~~s~~g~~l~~g~  253 (498)
                      -. ..+.|.+..-|..+.......        ...   ......          .....|...|..+.|+..|.+|++..
T Consensus       462 ~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  462 VG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             ec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence            43 346666654332111100000        000   000000          01124667899999999999999876


Q ss_pred             CC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          254 SD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       254 ~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      .+   ..|.|+++...+...-+....+.|.++.|+ |...+|++++ ...|++||+.    ....+..+......|..++
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaT-q~~vRiYdL~----kqelvKkL~tg~kwiS~ms  614 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVAT-QRSVRIYDLS----KQELVKKLLTGSKWISSMS  614 (733)
T ss_pred             cCCCcceEEEEecccccccCchhhcCCceeEEEec-CCCceEEEEe-ccceEEEehh----HHHHHHHHhcCCeeeeeee
Confidence            53   569999998877666666677889999998 4455555555 4689999997    6666777776778899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      .+|.|..|+.++.|+.+..+|+.-..                                 .+.+++..|...      ..+
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlss---------------------------------kPyk~lr~H~~a------vr~  655 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSS---------------------------------KPYKTLRLHEKA------VRS  655 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCc---------------------------------chhHHhhhhhhh------hhh
Confidence            99999999999999999999998643                                 334445555422      233


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECC------CC---cEEEEeccCCCC----eeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLV------SG---EQVAALKYHTSP----VRDCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~------~~---~~~~~~~~h~~~----v~~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                      .+|.+.-.++++|+.||++.|+.-.      ..   -++..+++|...    |.++.|+|..++|++++.||+|++|
T Consensus       656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  656 VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            3555567789999999999998522      11   246777888765    9999999999999999999999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=6.7e-26  Score=191.99  Aligned_cols=283  Identities=23%  Similarity=0.321  Sum_probs=214.3

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------E--EEE-EeecCCCceeEEEEEeC-------CCCCeEEEEEC
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGW-------K--IQK-DILAKSLRWTVTDTSLS-------PDQRHLVYASM  196 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-------~--~~~-~~~~~~~~~~v~~~~~s-------p~~~~l~~~s~  196 (498)
                      ...+.|||||..|++-+.|..+.+|++...-       .  ... ..........|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            3457899999999999999999999985320       0  000 00111223367777775       67789999999


Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeee--EEE-
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLS--LRI-  272 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~--~~~-  272 (498)
                      +.-|++||.-+|+.......-...+.+           ....+++|+|||.+|++|. ...|+++|+. .|...  ... 
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~-----------taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEY-----------TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhh-----------hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence            999999999999876655543322211           1467899999999988875 6689999993 33321  111 


Q ss_pred             ----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCcE
Q 010883          273 ----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAI  347 (498)
Q Consensus       273 ----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i  347 (498)
                          .+..+-+.|++|+|.+...++.|+....+-||.-.    ...++..+-+|.+.|+.+.|.++|+.|.+|+. |..|
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI  275 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI  275 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence                13367789999998888899999999998888776    77889999999999999999999999999885 6789


Q ss_pred             EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883          348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS  427 (498)
Q Consensus       348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  427 (498)
                      ..||+|...                                 .++..+..|.. .+.-++.|  ...|++++|++|+.||
T Consensus       276 l~WDiR~~~---------------------------------~pv~~L~rhv~-~TNQRI~F--Dld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  276 LCWDIRYSR---------------------------------DPVYALERHVG-DTNQRILF--DLDPKGEILASGDTDG  319 (406)
T ss_pred             EEEeehhcc---------------------------------chhhhhhhhcc-CccceEEE--ecCCCCceeeccCCCc
Confidence            999999843                                 33333344332 01222333  3456899999999999


Q ss_pred             eEEEEECCC-CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC
Q 010883          428 CVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD  468 (498)
Q Consensus       428 ~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D  468 (498)
                      .|++||+.. +..+..+..|...++.++++|--++++|++..
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            999999998 78788888899999999999999999998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.5e-26  Score=202.23  Aligned_cols=275  Identities=19%  Similarity=0.256  Sum_probs=206.1

Q ss_pred             EECC-CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCceec-cccccccccCccc
Q 010883          149 GFQA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMES-LANVTEIHDGLDF  225 (498)
Q Consensus       149 ~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~  225 (498)
                      ++.| ..+.+||+.+|............  .-.++.. -.+.+++++.. ...|.+|.+....... ...          
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a--~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v----------   79 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLA--QAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIV----------   79 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccc--cchhhhh-hchhheeeecccCccccccccCchhhhhhhcc----------
Confidence            3344 45999999999655443222110  0111111 13356666654 4589999987654333 111          


Q ss_pred             cccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEc
Q 010883          226 SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD  305 (498)
Q Consensus       226 ~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd  305 (498)
                             -.++|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+ .++.+|++|+.||.|.+|+
T Consensus        80 -------~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~  151 (476)
T KOG0646|consen   80 -------LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWL  151 (476)
T ss_pred             -------cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEE
Confidence                   12379999999999999999899999999999999999999999999999998 8999999999999999998


Q ss_pred             Cccc-----cCCCceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883          306 RRCL-----NVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP  378 (498)
Q Consensus       306 ~~~~-----~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (498)
                      +...     ....++...+..|.-+|+.+...+.  ..+|++++.|.++++||+...                       
T Consensus       152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-----------------------  208 (476)
T KOG0646|consen  152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-----------------------  208 (476)
T ss_pred             EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-----------------------
Confidence            7421     1256788999999999999998764  368999999999999999873                       


Q ss_pred             cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC----------------cEEEE
Q 010883          379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG----------------EQVAA  442 (498)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----------------~~~~~  442 (498)
                                 ..+.++....   .+..    .+.+|.++.+++|+.+|.|.+.++...                ..+..
T Consensus       209 -----------~LLlti~fp~---si~a----v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~  270 (476)
T KOG0646|consen  209 -----------VLLLTITFPS---SIKA----VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV  270 (476)
T ss_pred             -----------eeeEEEecCC---ccee----EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence                       3333333222   2222    245667999999999999999886532                24556


Q ss_pred             eccCCC--CeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCc
Q 010883          443 LKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP  485 (498)
Q Consensus       443 ~~~h~~--~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~  485 (498)
                      +.+|.+  +|+|++.+-||.+|++|+.||.|+|||+.........
T Consensus       271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence            778988  9999999999999999999999999999876544433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=3.3e-27  Score=192.88  Aligned_cols=249  Identities=12%  Similarity=0.230  Sum_probs=203.9

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      -.+.+|++.|+....+.+..+.|+++.|-+-+|||.-+|..+..+    .|..-|.+++|+.|.++|++|+.+..++|+|
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekllrvfd  128 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD  128 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh----hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence            468999999999999999999999999999999999998665543    4555899999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      ++..+..               +..-.+|++.|..+.|....+.|++...|++|++||..+++.+.++ ....+|+++.+
T Consensus       129 ln~p~Ap---------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-~~~s~VtSlEv  192 (334)
T KOG0278|consen  129 LNRPKAP---------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-EFNSPVTSLEV  192 (334)
T ss_pred             ccCCCCC---------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE-ecCCCCcceee
Confidence            8765431               1122378899999999998888999999999999999999999888 56678999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      + +++++|.+ ...+.|.+||..    ....+..+. ..-.|.+...+|+...+++|+.|..++.||..+..        
T Consensus       193 s-~dG~ilTi-a~gssV~Fwdak----sf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--------  257 (334)
T KOG0278|consen  193 S-QDGRILTI-AYGSSVKFWDAK----SFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--------  257 (334)
T ss_pred             c-cCCCEEEE-ecCceeEEeccc----cccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc--------
Confidence            8 78877654 456799999997    555555554 34568889999999999999999999999999843        


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEE-ccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV  440 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~  440 (498)
                                                .+-.+ ++|...  +    -+..|||||..-++|+.||+|+||.+..++..
T Consensus       258 --------------------------Ei~~~nkgh~gp--V----hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  258 --------------------------EIGSYNKGHFGP--V----HCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             --------------------------eeeecccCCCCc--e----EEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence                                      33333 455422  2    22367889999999999999999998766543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=212.03  Aligned_cols=308  Identities=17%  Similarity=0.222  Sum_probs=224.7

Q ss_pred             ccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe-
Q 010883          112 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH-  190 (498)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-  190 (498)
                      ...++.....+..+.+.++.+.|+++.=+|-=..+|.|..+|+|.++++..++.+.....   ..+.|+.++|..||+. 
T Consensus       183 ~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~---d~g~VtslSFrtDG~p~  259 (910)
T KOG1539|consen  183 RLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ---DWGRVTSLSFRTDGNPL  259 (910)
T ss_pred             cEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc---cccceeEEEeccCCCee
Confidence            344556666666788899999999999999999999999999999999999876665432   2468999999999975 


Q ss_pred             EEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---
Q 010883          191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---  267 (498)
Q Consensus       191 l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---  267 (498)
                      |++|+..|.+.+||++..+.......               .|.+.|....|.|....+++++.|+.+++|=..++.   
T Consensus       260 las~~~~G~m~~wDLe~kkl~~v~~n---------------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p  324 (910)
T KOG1539|consen  260 LASGRSNGDMAFWDLEKKKLINVTRN---------------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP  324 (910)
T ss_pred             EEeccCCceEEEEEcCCCeeeeeeec---------------cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence            55566679999999998776554332               122344444555544445555545444443221110   


Q ss_pred             -eeEEEeccC----------------------------------------------------------------------
Q 010883          268 -LSLRILAHT----------------------------------------------------------------------  276 (498)
Q Consensus       268 -~~~~~~~~~----------------------------------------------------------------------  276 (498)
                       .++.-.+|.                                                                      
T Consensus       325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~  404 (910)
T KOG1539|consen  325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE  404 (910)
T ss_pred             hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence             000000111                                                                      


Q ss_pred             --------------------------------------------CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883          277 --------------------------------------------SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK  312 (498)
Q Consensus       277 --------------------------------------------~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  312 (498)
                                                                  ..+++++.+ ..|++.+.|+..|.|-+|++.    .
T Consensus       405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQ----S  479 (910)
T KOG1539|consen  405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQ----S  479 (910)
T ss_pred             cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcc----c
Confidence                                                        345666665 667778888888888888886    5


Q ss_pred             CceeEEe---ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883          313 GKPAGVL---MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD  389 (498)
Q Consensus       313 ~~~~~~~---~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (498)
                      +.....+   ..|..+|+.++...-++.+++++.+|.+++||+.+..                                 
T Consensus       480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~---------------------------------  526 (910)
T KOG1539|consen  480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV---------------------------------  526 (910)
T ss_pred             CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc---------------------------------
Confidence            5555566   4799999999999889999999999999999998732                                 


Q ss_pred             ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                       .+..++.....       ..+.++.....++++..|-.|+++|+.+.+.+..+.+|.+.|++++|||||++|++++.|+
T Consensus       527 -l~~~l~l~~~~-------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~  598 (910)
T KOG1539|consen  527 -LKKSLRLGSSI-------TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS  598 (910)
T ss_pred             -eeeeeccCCCc-------ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence             22222221111       1112333556788999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCCC
Q 010883          470 DVVRWEFPGNGEAA  483 (498)
Q Consensus       470 ~i~iw~~~~~~~~~  483 (498)
                      +|++||+.++....
T Consensus       599 tIr~wDlpt~~lID  612 (910)
T KOG1539|consen  599 TIRTWDLPTGTLID  612 (910)
T ss_pred             cEEEEeccCcceee
Confidence            99999999887653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-25  Score=211.59  Aligned_cols=280  Identities=17%  Similarity=0.209  Sum_probs=217.3

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      -.|+..-+.++|.|+|++|.+++.||.|++|+..........+.  .+...|.+++.  ++.+|++++.+++|.+|.+.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence            36788899999999999999999999999999876522222221  14446766665  566999999999999999988


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      ++...+...                .+.++.+++|+-+|+++|.|+.|-.|++.++........+.+|.++|.++.|. |
T Consensus        86 ~~~~~iL~R----------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p  148 (933)
T KOG1274|consen   86 GEEDTILAR----------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-P  148 (933)
T ss_pred             CCccceeee----------------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-C
Confidence            876433321                23389999999999999999999999999999999999999999999999997 8


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--------ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      .+++||+.+.||.|++||+.    .+.....+.+        ....+..++|+|++..|+..+.|+.|++|+.....   
T Consensus       149 ~~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we---  221 (933)
T KOG1274|consen  149 KGNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE---  221 (933)
T ss_pred             CCCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce---
Confidence            89999999999999999997    4444333332        14457789999999999999999999999988743   


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                                                     ....+...........    ..|||+|+|||+++.||.|.|||+.+.+.
T Consensus       222 -------------------------------~~f~Lr~~~~ss~~~~----~~wsPnG~YiAAs~~~g~I~vWnv~t~~~  266 (933)
T KOG1274|consen  222 -------------------------------LQFKLRDKLSSSKFSD----LQWSPNGKYIAASTLDGQILVWNVDTHER  266 (933)
T ss_pred             -------------------------------eheeecccccccceEE----EEEcCCCcEEeeeccCCcEEEEecccchh
Confidence                                           2233333222222222    36777999999999999999999988332


Q ss_pred             EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883          440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       440 ~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                          ......|.+++|.|+.+-|-.-...|...+|
T Consensus       267 ----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  267 ----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             ----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence                2234689999999999866665556655554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.7e-25  Score=187.45  Aligned_cols=243  Identities=20%  Similarity=0.294  Sum_probs=188.5

Q ss_pred             CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      ....|..+.|+|.+..|++++.||.+++|++........++                 |..++.+++|.++. .+++|+.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----------------~~~plL~c~F~d~~-~~~~G~~   73 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----------------HGAPLLDCAFADES-TIVTGGL   73 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-----------------cCCceeeeeccCCc-eEEEecc
Confidence            34579999999999999999999999999998875443333                 55699999999754 6999999


Q ss_pred             CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883          255 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD  334 (498)
Q Consensus       255 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  334 (498)
                      ||.|+.+|++++.. ..+..|..+|.||.++ +....+++|+.|++|++||.+    .......+. ....|.++..+  
T Consensus        74 dg~vr~~Dln~~~~-~~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R----~~~~~~~~d-~~kkVy~~~v~--  144 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNE-DQIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPR----NKVVVGTFD-QGKKVYCMDVS--  144 (323)
T ss_pred             CceEEEEEecCCcc-eeeccCCCceEEEEee-ccCCeEEEcccCccEEEEecc----ccccccccc-cCceEEEEecc--
Confidence            99999999999876 4566899999999998 667789999999999999998    433443443 23478888774  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      ++.|++|+.|..+.+||++++......                                   ..+.....+++.   ++-
T Consensus       145 g~~LvVg~~~r~v~iyDLRn~~~~~q~-----------------------------------reS~lkyqtR~v---~~~  186 (323)
T KOG1036|consen  145 GNRLVVGTSDRKVLIYDLRNLDEPFQR-----------------------------------RESSLKYQTRCV---ALV  186 (323)
T ss_pred             CCEEEEeecCceEEEEEcccccchhhh-----------------------------------ccccceeEEEEE---EEe
Confidence            668999999999999999996543211                                   111112223332   333


Q ss_pred             CCCcEEEEEecCCeEEEEECCCC----cEEEEeccCC---------CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          415 TGQKYIYTGSHDSCVYVYDLVSG----EQVAALKYHT---------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      |++.-.++++-||.|.+=.+...    +....|+.|.         .||++++|+|-...||||+.||.|.+||+.+.+.
T Consensus       187 pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  187 PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh
Confidence            46777888999999988777665    4455666664         3799999999999999999999999999987654


Q ss_pred             C
Q 010883          482 A  482 (498)
Q Consensus       482 ~  482 (498)
                      .
T Consensus       267 l  267 (323)
T KOG1036|consen  267 L  267 (323)
T ss_pred             h
Confidence            4

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=211.26  Aligned_cols=220  Identities=16%  Similarity=0.268  Sum_probs=190.9

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEe-CCCCCeEEEEECCCeEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-SPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~s~d~~i~i  202 (498)
                      ...++.|.+.|+.++...+|+.|++++.|-+|++|+...+. ..-......|...|.|+++ .++...+|+|+-|+.|.+
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl  144 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL  144 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence            56789999999999999999999999999999999998763 1222345678889999999 888999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCC-CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDG-GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      ||+.++..........      ....... |+..+|++++-++.|..|++|+..+.+++||..+++.+..+.+|...|.+
T Consensus       145 WDin~~~~~l~~s~n~------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~  218 (735)
T KOG0308|consen  145 WDINTGTATLVASFNN------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV  218 (735)
T ss_pred             EEccCcchhhhhhccc------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence            9999874311111111      1111122 77889999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      +..+ ++|..+++++.||+|++||+.    ...++.++..|.+.|+++..+|+-.++++|+.||.|..-|+++.
T Consensus       219 ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  219 LLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9997 899999999999999999998    88899999999999999999999999999999999999999984

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=6.3e-26  Score=203.43  Aligned_cols=265  Identities=16%  Similarity=0.206  Sum_probs=195.2

Q ss_pred             eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec-cccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883          170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  248 (498)
Q Consensus       170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~  248 (498)
                      +...+|...|.++++.|.|..+++|+.|.+|++||+....... .+.....            .....|.+++|++.|..
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P------------~E~h~i~sl~ys~Tg~~  228 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP------------CETHQINSLQYSVTGDQ  228 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc------------ccccccceeeecCCCCe
Confidence            3456778899999999999999999999999999997643211 1111000            11227999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEE------------EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee
Q 010883          249 LVAGSSDDCIYVYDLEANKLSLR------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA  316 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  316 (498)
                      |++.+.....+|+|-...+....            ..+|...++|.+|+|.+.+.|++++.||++++||+.......+.+
T Consensus       229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi  308 (641)
T KOG0772|consen  229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI  308 (641)
T ss_pred             EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence            99999899999999765444322            247999999999998889999999999999999997443222222


Q ss_pred             EEe--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEE
Q 010883          317 GVL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT  394 (498)
Q Consensus       317 ~~~--~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (498)
                      ...  .+..-+++.++|++|++.||+|+.||.|.+|+.++....                               .....
T Consensus       309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------------------p~~~v  357 (641)
T KOG0772|consen  309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------------------PVMKV  357 (641)
T ss_pred             eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------------------cceEe
Confidence            211  133456899999999999999999999999998764322                               12223


Q ss_pred             EccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEecc--CCCCeeeeEEcCCCCeEEEEeC----
Q 010883          395 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKY--HTSPVRDCSWHPSQPMLVSSSW----  467 (498)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~----  467 (498)
                      -+.|.....+.    ++.||+||++|++-+.|+++++||++.. +++....+  ...+-+.++|||+.++|++|..    
T Consensus       358 k~AH~~g~~It----si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~  433 (641)
T KOG0772|consen  358 KDAHLPGQDIT----SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG  433 (641)
T ss_pred             eeccCCCCcee----EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence            34444322333    3367779999999999999999999875 44554443  2345688999999999999853    


Q ss_pred             --CCcEEEecCCCCCC
Q 010883          468 --DGDVVRWEFPGNGE  481 (498)
Q Consensus       468 --Dg~i~iw~~~~~~~  481 (498)
                        -|.+.+||-.+-+.
T Consensus       434 ~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  434 MTAGTLFFFDRMTLDT  449 (641)
T ss_pred             CCCceEEEEeccceee
Confidence              46788888665543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.8e-26  Score=186.91  Aligned_cols=260  Identities=22%  Similarity=0.282  Sum_probs=200.8

Q ss_pred             CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce-eccccccccccCccccccCCCCceecEEEEEEcC--CCCEE
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGREL  249 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l  249 (498)
                      ..|...|.++...--|+.||+++.|++|+|+.++.+.. ..+.              ...||.+||..++|-.  .|.+|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~--------------~L~Gh~GPVwqv~wahPk~G~iL   73 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA--------------ELTGHSGPVWKVAWAHPKFGTIL   73 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee--------------EecCCCCCeeEEeecccccCcEe
Confidence            46777888888888899999999999999999987654 1121              2348999999999976  89999


Q ss_pred             EEEeCCCeEEEEECCCCeee--EEEeccCCCeeEEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883          250 VAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI  326 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v  326 (498)
                      |+++.||.|.||.-++++..  .....|...|++++|.|.+ +-.|++++.||.|.|.+.+... ..........|.-.|
T Consensus        74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~Gv  152 (299)
T KOG1332|consen   74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGV  152 (299)
T ss_pred             eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhhcccccc
Confidence            99999999999998887533  3445899999999998644 5688999999999999987441 223445567899999


Q ss_pred             EEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          327 TFIDSRGD---G-----------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       327 ~~l~~~~~---~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      ++++|.|-   |           +.|++|+.|..|+||+.....-                                ..-
T Consensus       153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w--------------------------------~~e  200 (299)
T KOG1332|consen  153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW--------------------------------KLE  200 (299)
T ss_pred             ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--------------------------------hhh
Confidence            99999985   4           5699999999999999987421                                122


Q ss_pred             EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-c--EEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-E--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                      .++.+|..  .+....++|...--..+||+++.||+|.||..... +  ....++.....+..++||+.|++|+.++.|+
T Consensus       201 ~~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  201 RTLEGHKD--WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             hhhhhcch--hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence            33566663  23344566665555678999999999999986521 1  1223334567899999999999999999999


Q ss_pred             cEEEecCCCCCC
Q 010883          470 DVVRWEFPGNGE  481 (498)
Q Consensus       470 ~i~iw~~~~~~~  481 (498)
                      .|.+|.-+..++
T Consensus       279 kvtlwke~~~Gk  290 (299)
T KOG1332|consen  279 KVTLWKENVDGK  290 (299)
T ss_pred             EEEEEEeCCCCc
Confidence            999998766543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=5.2e-24  Score=197.88  Aligned_cols=276  Identities=14%  Similarity=0.130  Sum_probs=194.6

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE-EEEECCCeEEEEECCCCceecccccccccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHD  221 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (498)
                      ++.+++++.|+.|++||+.+++.+....   .+. .+..++|+|+++.+ ++++.++.|++||..+++........    
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~---~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----   72 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFP---VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG----   72 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEE---CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC----
Confidence            3678899999999999999886555432   222 46789999999977 45677899999999887654322210    


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC-
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-  299 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-  299 (498)
                                   ..+..++|+|+++.++++ ..++.|++||+.+.+.+..+. +...+.+++|+ +++.++++++.++ 
T Consensus        73 -------------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~-~dg~~l~~~~~~~~  137 (300)
T TIGR03866        73 -------------PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVS-PDGKIVVNTSETTN  137 (300)
T ss_pred             -------------CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEEC-CCCCEEEEEecCCC
Confidence                         034578999999977655 458999999999887776664 33456889997 7888888888765 


Q ss_pred             eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883          300 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP  378 (498)
Q Consensus       300 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (498)
                      .+.+||..    ......... ....+..++|+|++++|+++ ..++.|++||+.+...                     
T Consensus       138 ~~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------------------  191 (300)
T TIGR03866       138 MAHFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------------------  191 (300)
T ss_pred             eEEEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------------------
Confidence            56778986    444443332 23345789999999988654 4689999999987432                     


Q ss_pred             cCcccccCCCCceEEEEccCceeEE-EEEEEeccccCCCCcEEEEE-ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc
Q 010883          379 PQARDLKHPCDQSVATYKGHSVLRT-LIRCHFSPVYSTGQKYIYTG-SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH  456 (498)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s  456 (498)
                                   +..+..+..... .........|+|++++++++ ..++.|.+||+.+++.+..+. +...+.+++|+
T Consensus       192 -------------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~  257 (300)
T TIGR03866       192 -------------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT  257 (300)
T ss_pred             -------------eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence                         111111000000 00001123567899986554 456789999999988876654 44579999999


Q ss_pred             CCCCeEEEE-eCCCcEEEecCCCCCC
Q 010883          457 PSQPMLVSS-SWDGDVVRWEFPGNGE  481 (498)
Q Consensus       457 p~~~~l~s~-~~Dg~i~iw~~~~~~~  481 (498)
                      |++++|+++ +.+|.|.+||+.+...
T Consensus       258 ~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       258 PDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            999998876 5689999999998654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1e-26  Score=203.09  Aligned_cols=250  Identities=20%  Similarity=0.253  Sum_probs=200.9

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ....|.+.+..+.|-++...|++|+.|..|++|++..++......+.              |-.++|+++.|.+++++++
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--------------Gs~g~it~~d~d~~~~~~i  235 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA--------------GSLGNITSIDFDSDNKHVI  235 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--------------ccCCCcceeeecCCCceEE
Confidence            34567889999999999999999999999999999877632222221              3344799999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      +++.|+.+++|++...+...++.+|.+.|+++.|. .....+++|+.|.+|++||+.    ...+..++. ....+..|.
T Consensus       236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~----k~~C~kt~l-~~S~cnDI~  309 (459)
T KOG0288|consen  236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQ----KAYCSKTVL-PGSQCNDIV  309 (459)
T ss_pred             eecCCCceeeeeccchhhhhhhcccccceeeehhh-ccccceeeccccchhhhhhhh----hhheecccc-ccccccceE
Confidence            99999999999999999999999999999999997 445559999999999999997    544444443 335566666


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      .+  ...+++|..|++|++||++...                                  .......+..       ..+
T Consensus       310 ~~--~~~~~SgH~DkkvRfwD~Rs~~----------------------------------~~~sv~~gg~-------vtS  346 (459)
T KOG0288|consen  310 CS--ISDVISGHFDKKVRFWDIRSAD----------------------------------KTRSVPLGGR-------VTS  346 (459)
T ss_pred             ec--ceeeeecccccceEEEeccCCc----------------------------------eeeEeecCcc-------eee
Confidence            65  5578999999999999999843                                  3333333331       123


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC----CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      +..+++|..|.+.+.|.++.+.|+.+.+....+.+.    ....+.+.|||++.|+++||.||.|+||++.+++...
T Consensus       347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~  423 (459)
T KOG0288|consen  347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK  423 (459)
T ss_pred             EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence            356668999999999999999999999888877632    2348899999999999999999999999999886543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=9.7e-25  Score=180.25  Aligned_cols=240  Identities=20%  Similarity=0.216  Sum_probs=201.8

Q ss_pred             eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883          170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  249 (498)
Q Consensus       170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l  249 (498)
                      +...+|..+++.+.++.+|.+|.+++.|.+..||-..+|+.+....                ||++.|+|+..+.+.+++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~----------------GHtGavW~~Did~~s~~l   67 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD----------------GHTGAVWCCDIDWDSKHL   67 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec----------------CCCceEEEEEecCCccee
Confidence            4557899999999999999999999999999999988887655544                799999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-----CCeEEEEcCcccc---CCCceeEEecc
Q 010883          250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN---VKGKPAGVLMG  321 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~~---~~~~~~~~~~~  321 (498)
                      ++|+.|.++++||+++|+++..+ ....+|..+.|+ .++++++....     .+.|.++|++...   ....+...+..
T Consensus        68 iTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   68 ITGSADQTAKLWDVETGKQLATW-KTNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             eeccccceeEEEEcCCCcEEEEe-ecCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence            99999999999999999998887 566789999998 77887776654     4679999997332   24456778888


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883          322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL  401 (498)
Q Consensus       322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (498)
                      +...++.+.|.|-+++|++|..||.|.+||++++.                                 +.+..-+.|.. 
T Consensus       146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---------------------------------~~v~s~~~h~~-  191 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---------------------------------ELVDSDEEHSS-  191 (327)
T ss_pred             CccceeeeeecccCCEEEEecCCCcEEEEEcccCc---------------------------------eeeechhhhcc-
Confidence            88999999999999999999999999999999853                                 23333334442 


Q ss_pred             EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC
Q 010883          402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW  467 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~  467 (498)
                           .+..+.+++|..++++++.|.+-++||..+.+.++++. ...||++.+++|....++.|+.
T Consensus       192 -----~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  192 -----KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             -----ccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCC
Confidence                 22345778899999999999999999999999999997 5679999999998887776654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.1e-25  Score=188.50  Aligned_cols=270  Identities=22%  Similarity=0.337  Sum_probs=224.6

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCcc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD  224 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (498)
                      .+++...++++.. .        ......+|...|..++-......+.+++.|.+.+||.++++.+...+.         
T Consensus       126 rivssFk~~t~~~-~--------lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~---------  187 (481)
T KOG0300|consen  126 RIVSSFKDGTVKF-R--------LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT---------  187 (481)
T ss_pred             hheeeecCCceeE-e--------ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec---------
Confidence            4555566665322 1        222446788899999988888899999999999999999999876654         


Q ss_pred             ccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC------CCC--------------------------------
Q 010883          225 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL------EAN--------------------------------  266 (498)
Q Consensus       225 ~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~------~~~--------------------------------  266 (498)
                             ||.+.|++++|++.+.++++++.|++..||..      ...                                
T Consensus       188 -------GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t  260 (481)
T KOG0300|consen  188 -------GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT  260 (481)
T ss_pred             -------ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence                   79999999999999999999999999999962      110                                


Q ss_pred             --eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883          267 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       267 --~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                        .++..+.+|.+.|.+..|. ..++.+++++.|.+..+||++    .+.++..+.+|....+.++-+|..+++++.+.|
T Consensus       261 iRvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVE----tge~v~~LtGHd~ELtHcstHptQrLVvTsSrD  335 (481)
T KOG0300|consen  261 IRVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVE----TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD  335 (481)
T ss_pred             eeeeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeec----cCceeccccCcchhccccccCCcceEEEEeccC
Confidence              1345677899999999997 889999999999999999998    999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS  424 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  424 (498)
                      .+.++||++..                                 -+.+..|.+|....  ....|..     +..+++|+
T Consensus       336 tTFRLWDFRea---------------------------------I~sV~VFQGHtdtV--TS~vF~~-----dd~vVSgS  375 (481)
T KOG0300|consen  336 TTFRLWDFREA---------------------------------IQSVAVFQGHTDTV--TSVVFNT-----DDRVVSGS  375 (481)
T ss_pred             ceeEeccchhh---------------------------------cceeeeecccccce--eEEEEec-----CCceeecC
Confidence            99999999852                                 26788999998543  3444443     45689999


Q ss_pred             cCCeEEEEECCCC-cEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCc
Q 010883          425 HDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP  485 (498)
Q Consensus       425 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~  485 (498)
                      .|.+|+|||+++. .++.++. ..++++.++.+..++.|+.--++..|++||+++...+..|
T Consensus       376 DDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP  436 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP  436 (481)
T ss_pred             CCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence            9999999999875 4677776 5678999999999999999999999999999988765544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.6e-25  Score=184.15  Aligned_cols=275  Identities=17%  Similarity=0.159  Sum_probs=201.3

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEEE
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iwd  204 (498)
                      .+|.+-|+|+.|.+.|+++|+|+.|++|+|||..++ ...........|.+.|..+.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            578899999999999999999999999999996543 23334445667888999999976  589999999999999998


Q ss_pred             CCCCce-------eccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe------ee
Q 010883          205 VGSGTM-------ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK------LS  269 (498)
Q Consensus       205 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~~------~~  269 (498)
                      -.....       .....+.              .-...|+++.|.|  -|-.||+++.||.|+||+....-      +.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~--------------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq  155 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLV--------------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ  155 (361)
T ss_pred             ecccccccccceeEEEEEee--------------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence            532111       1111111              1234799999999  56789999999999999865432      22


Q ss_pred             EEEe-------ccCCCeeEEEEeCC--CCCEEEEeeCC-----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-
Q 010883          270 LRIL-------AHTSDVNTVCFGDE--SGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-  334 (498)
Q Consensus       270 ~~~~-------~~~~~v~~~~~~~~--~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-  334 (498)
                      ..+.       .+..+..|+.|++.  ...+|+.|+.+     +.++||...........+..+.+|..+|+.|+|.|+ 
T Consensus       156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~  235 (361)
T KOG2445|consen  156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI  235 (361)
T ss_pred             hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence            2222       46678899999843  24678888766     578999876443355667788899999999999996 


Q ss_pred             ---CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883          335 ---GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP  411 (498)
Q Consensus       335 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (498)
                         -..||+++.|| |+||.++........                                                  
T Consensus       236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~--------------------------------------------------  264 (361)
T KOG2445|consen  236 GRSYHLLAVATKDG-VRIFKVKVARSAIEE--------------------------------------------------  264 (361)
T ss_pred             CCceeeEEEeecCc-EEEEEEeeccchhhh--------------------------------------------------
Confidence               35789999999 999999753211100                                                  


Q ss_pred             ccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                            .-+.++..-+.   +   .-+.+..+..|.+.|+.+.|+-.|..|++.|.||.|++|..+-.
T Consensus       265 ------ee~~~~~~~~~---l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  265 ------EEVLAPDLMTD---L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             ------hcccCCCCccc---c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence                  00000000011   1   22456778899999999999999999999999999999986543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=2.2e-24  Score=200.28  Aligned_cols=299  Identities=19%  Similarity=0.257  Sum_probs=227.9

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----EEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      .+.+|.+.|+++.|+|++..|++++.|.++.+|.-.+..-+.    ++-...+..+......|+|+++.+++-+..|-.+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            345999999999999999999999999999999987651121    1112223344678899999999999999999999


Q ss_pred             EEECCCCc-eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccC
Q 010883          202 IVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHT  276 (498)
Q Consensus       202 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----~~~~~~~~~  276 (498)
                      +|...... .....              .-.||...|.+++|.|.|.+|++.+.|-+-+++-.-..+    .+.+-.-|.
T Consensus       342 lWkt~d~~~w~~~~--------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG  407 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEP--------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG  407 (764)
T ss_pred             EEeccCccceeecc--------------ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence            99933221 11111              123788999999999999999999999999998654222    223334688


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc----------c------------------cC-----------C-----
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC----------L------------------NV-----------K-----  312 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~----------~------------------~~-----------~-----  312 (498)
                      ..++|+++- +.+..|++|.....+|+|+...          .                  ..           .     
T Consensus       408 yDl~c~~~v-n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~  486 (764)
T KOG1063|consen  408 YDLTCLSFV-NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA  486 (764)
T ss_pred             ccceeeehc-cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence            899999997 4477888999999999997530          0                  00           0     


Q ss_pred             ----------------------------CceeEEeccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCCCcc
Q 010883          313 ----------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNA  359 (498)
Q Consensus       313 ----------------------------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~  359 (498)
                                                  ...+..+.+|.-.|.+++.+|+++++|+++...     .|++|+..+-    
T Consensus       487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----  562 (764)
T KOG1063|consen  487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----  562 (764)
T ss_pred             eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch----
Confidence                                        001223456888899999999999999988653     5899998773    


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                                                    ..+..+.+|+...+.+      +|||||++|++.+.|.++.+|.......
T Consensus       563 ------------------------------~~~~~L~~HsLTVT~l------~FSpdg~~LLsvsRDRt~sl~~~~~~~~  606 (764)
T KOG1063|consen  563 ------------------------------LQVQELEGHSLTVTRL------AFSPDGRYLLSVSRDRTVSLYEVQEDIK  606 (764)
T ss_pred             ------------------------------hhhheecccceEEEEE------EECCCCcEEEEeecCceEEeeeeecccc
Confidence                                          3444677777443333      6777999999999999999998754322


Q ss_pred             ----EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          440 ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       440 ----~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                          ....+.|..-|+++.|+|++.+++|+|.|.+|++|..+..
T Consensus       607 ~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  607 DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence                3346789999999999999999999999999999999877

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=2.2e-23  Score=186.76  Aligned_cols=300  Identities=17%  Similarity=0.248  Sum_probs=224.4

Q ss_pred             CCCCccccCCCCceEEEEEcCC--CCEEEEEE--CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC
Q 010883          121 VNGPWPVDQTTSRAYVSQFSAD--GSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM  196 (498)
Q Consensus       121 ~~~~~~l~~h~~~v~~~~~s~d--g~~la~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~  196 (498)
                      ....+.+......|.|++||+-  |.+|+.-.  .+..+.|||...+.......   ..+..|....|+|.+..|+....
T Consensus       144 L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~nliit~G  220 (626)
T KOG2106|consen  144 LSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPNLIITCG  220 (626)
T ss_pred             ceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce---eccceEEEEEeccCCCcEEEEeC
Confidence            3344555677889999999983  56666543  34568899998875554433   23347889999997776666666


Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                      .+.+..|+.+++.......+.+..+            ..-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.
T Consensus       221 k~H~~Fw~~~~~~l~k~~~~fek~e------------kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~  287 (626)
T KOG2106|consen  221 KGHLYFWTLRGGSLVKRQGIFEKRE------------KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD  287 (626)
T ss_pred             CceEEEEEccCCceEEEeecccccc------------ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC
Confidence            7899999999887655444333221            13699999999997 8999999999999999988888888999


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc--------C----------------------------CCceeEEec
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--------V----------------------------KGKPAGVLM  320 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--------~----------------------------~~~~~~~~~  320 (498)
                      +.|.+++.. .++.+| +|+.|..|..||-.-..        .                            .........
T Consensus       288 ggv~~L~~l-r~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~  365 (626)
T KOG2106|consen  288 GGVFSLCML-RDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ  365 (626)
T ss_pred             CceEEEEEe-cCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence            999999997 666554 69999999999832000        0                            000112234


Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883          321 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV  400 (498)
Q Consensus       321 ~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (498)
                      +|......++.+|+...+++++.|+.+++|+-..                                    .+-+.     
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k------------------------------------~~wt~-----  404 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK------------------------------------LEWTK-----  404 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEccCCc------------------------------------eeEEE-----
Confidence            5777888999999999999999999999999221                                    11111     


Q ss_pred             eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          401 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       401 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                        .+....-+..|.|.| .+|.|+..|...+.|.++...+..-.. ..+++.++|+|+|.+||.|+.|+.|+||.++.++
T Consensus       405 --~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  405 --IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             --EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence              111112334677788 999999999999999999666655444 8899999999999999999999999999998876


Q ss_pred             CCC
Q 010883          481 EAA  483 (498)
Q Consensus       481 ~~~  483 (498)
                      ..-
T Consensus       481 ~~y  483 (626)
T KOG2106|consen  481 RKY  483 (626)
T ss_pred             cEE
Confidence            543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-24  Score=205.64  Aligned_cols=249  Identities=17%  Similarity=0.238  Sum_probs=202.4

Q ss_pred             CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc-eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  251 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~  251 (498)
                      ..|...-+.++|.|+|.+|++++.||.|++|+..... ......                .+...|.+++..  +.+|++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~----------------~~g~~v~~ia~~--s~~f~~   71 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID----------------ISGELVSSIACY--SNHFLT   71 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh----------------ccCceeEEEeec--ccceEE
Confidence            3566678999999999999999999999999976542 111111                022357666654  558999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883          252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS  331 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~  331 (498)
                      |+.+++|.+|.+.+++.-..+....-++++++|+ .+|++++.|+.|-.|++-++.    .......+.+|.++|.++.|
T Consensus        72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~  146 (933)
T KOG1274|consen   72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSY  146 (933)
T ss_pred             eeccceEEEeeCCCCCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeE
Confidence            9999999999999988766677778899999998 899999999999999999997    77888899999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce--eEEEEEEEe
Q 010883          332 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRTLIRCHF  409 (498)
Q Consensus       332 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  409 (498)
                      +|++++||+.+.||.|++||+.+.......                                  .+-..  .....+.+.
T Consensus       147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl----------------------------------~~v~k~n~~~~s~i~~  192 (933)
T KOG1274|consen  147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTL----------------------------------TGVDKDNEFILSRICT  192 (933)
T ss_pred             cCCCCEEEEEecCceEEEEEcccchhhhhc----------------------------------ccCCccccccccceee
Confidence            999999999999999999999974432221                                  11100  001134455


Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      .++|+|+|..++..+.|+.|.+|+..+.+....+.  .+...+.+++|+|.|+|||+++.||.|.|||+.+
T Consensus       193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            66888898889999999999999999999888775  3445599999999999999999999999999986

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=5e-24  Score=201.85  Aligned_cols=302  Identities=22%  Similarity=0.275  Sum_probs=233.8

Q ss_pred             cccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      .++.-.++|+.++|.-||+ .+|+|+..|.+-+||++..+.+..  ....|.+.|+...|.|....+++++.|+.+++|-
T Consensus       239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v--~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v  316 (910)
T KOG1539|consen  239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV--TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV  316 (910)
T ss_pred             EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee--eeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence            3444469999999999996 677788889999999998644443  3356777899999999999999999999888886


Q ss_pred             CCCCcee-ccccccccc-----------------------------------------c---------------------
Q 010883          205 VGSGTME-SLANVTEIH-----------------------------------------D---------------------  221 (498)
Q Consensus       205 ~~~~~~~-~~~~~~~~~-----------------------------------------~---------------------  221 (498)
                      .+++.-. +.......|                                         .                     
T Consensus       317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p  396 (910)
T KOG1539|consen  317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP  396 (910)
T ss_pred             eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence            5532210 000000000                                         0                     


Q ss_pred             -CccccccC----------------------------CC----Cc------eecEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 010883          222 -GLDFSAAD----------------------------DG----GY------SFGIFSLKFSTDGRELVAGSSDDCIYVYD  262 (498)
Q Consensus       222 -~~~~~~~~----------------------------~~----~h------~~~i~~~~~s~~g~~l~~g~~dg~i~vwd  262 (498)
                       ...|....                            .+    .+      ...+++++.++.|++.+.|...|.|-+|+
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN  476 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence             00000000                            00    11      24688999999999999999999999999


Q ss_pred             CCCCeeeEEE---eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE
Q 010883          263 LEANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI  339 (498)
Q Consensus       263 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  339 (498)
                      +.+|-....+   ..|..+|+.++. +.-++.+++++.+|.+++||..    ....+..+. -...++++..+.....++
T Consensus       477 mQSGi~r~sf~~~~ah~~~V~gla~-D~~n~~~vsa~~~Gilkfw~f~----~k~l~~~l~-l~~~~~~iv~hr~s~l~a  550 (910)
T KOG1539|consen  477 MQSGIHRKSFGDSPAHKGEVTGLAV-DGTNRLLVSAGADGILKFWDFK----KKVLKKSLR-LGSSITGIVYHRVSDLLA  550 (910)
T ss_pred             cccCeeecccccCccccCceeEEEe-cCCCceEEEccCcceEEEEecC----Ccceeeeec-cCCCcceeeeeehhhhhh
Confidence            9999887777   489999999999 4778899999999999999996    444555444 456778888888888999


Q ss_pred             EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883          340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY  419 (498)
Q Consensus       340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  419 (498)
                      .+..|-.|+++|..+                                  ...++.+.+|....+-      .+|||||++
T Consensus       551 ~~~ddf~I~vvD~~t----------------------------------~kvvR~f~gh~nritd------~~FS~DgrW  590 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVT----------------------------------RKVVREFWGHGNRITD------MTFSPDGRW  590 (910)
T ss_pred             hhcCceeEEEEEchh----------------------------------hhhhHHhhccccceee------eEeCCCCcE
Confidence            999999999999987                                  3566777888744332      377889999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC-CcEEEecC
Q 010883          420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEF  476 (498)
Q Consensus       420 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D-g~i~iw~~  476 (498)
                      |++++.|++|++||+.++.++-.+. -..+++++.|+|+|.+|||+..| .-|++|.-
T Consensus       591 lisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  591 LISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            9999999999999999999998875 56789999999999999999988 67999963

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=3.4e-25  Score=186.65  Aligned_cols=268  Identities=18%  Similarity=0.244  Sum_probs=191.1

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc-ccccc-cccCccccccCCCCceecEEEEEEcCCCCE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL-ANVTE-IHDGLDFSAADDGGYSFGIFSLKFSTDGRE  248 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~  248 (498)
                      ....|..++.+.+|+|||.++++|+.|..|+|.|++.--.... ..+.. ..............|..+|+++.|+|....
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            3456788999999999999999999999999999873211110 00000 000001112233468889999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEE--EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE---Eecccc
Q 010883          249 LVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG---VLMGHL  323 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~~  323 (498)
                      |++|+.|++|+++|+......+.  ......+|.++.|+ |.|.+|+.|....++++||+.    ..++..   .-..|.
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~----T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVN----TYQCFVSANPDDQHT  261 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEecc----ceeEeeecCcccccc
Confidence            99999999999999976433222  22455689999997 889999999999999999997    333332   234689


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      +.|+++.+++.+++.++++.||.|++||=-+.                                  +++.++........
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----------------------------------rCv~t~~~AH~gse  307 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----------------------------------RCVRTIGNAHGGSE  307 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccH----------------------------------HHHHHHHhhcCCce
Confidence            99999999999999999999999999997663                                  34444432221122


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC-----CCeeeeEEcCCCCeEEEEe-CCCcEEEecCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-----SPVRDCSWHPSQPMLVSSS-WDGDVVRWEFP  477 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~  477 (498)
                      +    .+..|+.+|+|+++.+.|..|++|.+.+++++..+.+-.     .--+...|+....+++.-. ..+.+.-||..
T Consensus       308 v----cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR  383 (430)
T KOG0640|consen  308 V----CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR  383 (430)
T ss_pred             e----eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence            2    334567799999999999999999999999998886431     1223445665555555433 23556667766


Q ss_pred             CCCC
Q 010883          478 GNGE  481 (498)
Q Consensus       478 ~~~~  481 (498)
                      +.+.
T Consensus       384 tadr  387 (430)
T KOG0640|consen  384 TADR  387 (430)
T ss_pred             chhh
Confidence            5543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=193.01  Aligned_cols=287  Identities=18%  Similarity=0.236  Sum_probs=218.1

Q ss_pred             CEEEEEEC-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883          144 SLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       144 ~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      .+++++.. ...|.+|.+...........   ..++|.+++-+|+|.+|+.|+..+.|++|.+.+|.....+.       
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-------  120 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-------  120 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcc---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------
Confidence            45665543 45789999987544442222   33489999999999999999899999999999998866553       


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCeeeEEEeccCCCeeEEEEeCC-CCCEE
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---------ANKLSLRILAHTSDVNTVCFGDE-SGHLI  292 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l  292 (498)
                               +|-..|+|+.|+-||.+|++|+.||.|.+|++.         +-++...+..|.-+|+++...+. ....|
T Consensus       121 ---------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl  191 (476)
T KOG0646|consen  121 ---------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL  191 (476)
T ss_pred             ---------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence                     456689999999999999999999999999763         23567778899999999988632 35689


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY  372 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  372 (498)
                      +++|.|.++++||+.    .+..+..+. ....+.+++.+|-++.++.|+.+|.|.+.++........-           
T Consensus       192 ~TaS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~-----------  255 (476)
T KOG0646|consen  192 YTASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG-----------  255 (476)
T ss_pred             EEecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc-----------
Confidence            999999999999997    666666665 4578999999999999999999999999988764321100           


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD  452 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  452 (498)
                             -.....+..+..+..+.+|.....+.+.    +++.||.+|++|+.||.|+|||+.+.+++.++....++|+.
T Consensus       256 -------v~~k~~~~~~t~~~~~~Gh~~~~~ITcL----ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn  324 (476)
T KOG0646|consen  256 -------VNQKGRHEENTQINVLVGHENESAITCL----AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN  324 (476)
T ss_pred             -------ccccccccccceeeeeccccCCcceeEE----EEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence                   0012223345677788888864444443    45559999999999999999999999999998867899999


Q ss_pred             eEEcCCCCeEEE-EeCCCcEEEecC
Q 010883          453 CSWHPSQPMLVS-SSWDGDVVRWEF  476 (498)
Q Consensus       453 l~~sp~~~~l~s-~~~Dg~i~iw~~  476 (498)
                      +.+.|-.+-.+. -...-.+-.|++
T Consensus       325 L~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  325 LQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             eEeeccccceecccccCccCCchHh
Confidence            999776553333 222333444443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=8.4e-25  Score=193.81  Aligned_cols=219  Identities=15%  Similarity=0.212  Sum_probs=179.9

Q ss_pred             CCCccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE----EEEEeecCCCceeEEEEEeCC-CCCeEEEEE
Q 010883          122 NGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSP-DQRHLVYAS  195 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s  195 (498)
                      .+...|.+|...-+.++|++.. -.|++|+.|++|.+||+.....    +.......+|...|..++|+| +..++++++
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence            3445889999999999999975 4789999999999999976432    455566789999999999999 557888999


Q ss_pred             CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe-eeEEEe
Q 010883          196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK-LSLRIL  273 (498)
Q Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~  273 (498)
                      .|+.+.|||++++ ......             ...+|+.+|.|++|+| ++..||+|+.|++|.+||+++.. ++..+.
T Consensus       248 dd~~L~iwD~R~~-~~~~~~-------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e  313 (422)
T KOG0264|consen  248 DDGKLMIWDTRSN-TSKPSH-------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE  313 (422)
T ss_pred             CCCeEEEEEcCCC-CCCCcc-------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence            9999999999974 111111             1126888999999999 66788999999999999998754 567888


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC----------CCceeEEeccccccEEEEEEcCCCCE-EEEEe
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEGITFIDSRGDGRY-LISNG  342 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~~  342 (498)
                      +|...|.++.|+|.....|++++.|+.+.+||+.....          ..+.+..-.||...|..+.|+|+... |++.+
T Consensus       314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            99999999999999999999999999999999964321          22345667789999999999998764 67888


Q ss_pred             CCCcEEEEeCCC
Q 010883          343 KDQAIKLWDIRK  354 (498)
Q Consensus       343 ~dg~i~iwd~~~  354 (498)
                      .|+.+.||.+..
T Consensus       394 eDN~LqIW~~s~  405 (422)
T KOG0264|consen  394 EDNILQIWQMAE  405 (422)
T ss_pred             CCceEEEeeccc
Confidence            999999999874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1.6e-22  Score=181.21  Aligned_cols=288  Identities=17%  Similarity=0.284  Sum_probs=213.5

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecC-CCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      ..-.+...+..|..+.|+|.+.-|+.....|.+.+|+...+....+.-... ..+..|.|++|.++|. +++|..+|.|.
T Consensus       192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~  270 (626)
T KOG2106|consen  192 KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNIL  270 (626)
T ss_pred             ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEE
Confidence            334556667888999999987655555567899999999885555443332 2236799999999997 56899999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------------
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--------------  267 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~--------------  267 (498)
                      ||+..+.+......                .|.+.|.+++...+|. |++|+.|..|..||-.-.+              
T Consensus       271 Iw~~~~~~~~k~~~----------------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iR  333 (626)
T KOG2106|consen  271 IWSKGTNRISKQVH----------------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIR  333 (626)
T ss_pred             EEeCCCceEEeEee----------------ecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCee
Confidence            99997665433222                3777999999999997 5669999999999832110              


Q ss_pred             --------------------------eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc
Q 010883          268 --------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG  321 (498)
Q Consensus       268 --------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  321 (498)
                                                ......+|......++.+ ++.+.+++++.|+.+++|+-      .++..... 
T Consensus       334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v~lW~~------~k~~wt~~-  405 (626)
T KOG2106|consen  334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHVRLWND------HKLEWTKI-  405 (626)
T ss_pred             EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceEEEccC------CceeEEEE-
Confidence                                      011223677788888887 77788999999999999992      23333322 


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883          322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL  401 (498)
Q Consensus       322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (498)
                      -..+..++.|+|.| .++.|...|...+.|.++                                   +.+.+.....  
T Consensus       406 ~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-----------------------------------~~lv~~~~d~--  447 (626)
T KOG2106|consen  406 IEDPAECADFHPSG-VVAVGTATGRWFVLDTET-----------------------------------QDLVTIHTDN--  447 (626)
T ss_pred             ecCceeEeeccCcc-eEEEeeccceEEEEeccc-----------------------------------ceeEEEEecC--
Confidence            35788899999999 999999999999999987                                   2222222222  


Q ss_pred             EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      ..+.    .+.|+|+|.+||.|+.|+.|+||.+... ....... .|..+|+.+.||+|+++|.+-+-|-.|..|....
T Consensus       448 ~~ls----~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~  522 (626)
T KOG2106|consen  448 EQLS----VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE  522 (626)
T ss_pred             CceE----EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence            1121    2367789999999999999999998764 3333332 3448999999999999999999999999994443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.1e-24  Score=205.52  Aligned_cols=208  Identities=16%  Similarity=0.222  Sum_probs=174.4

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeE
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV  200 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i  200 (498)
                      ++...+.+|.+.|..+.||.++ +|++++.|.+||+|++....++..+    .|..-|+|++|+| |.+|+++|+-|+.|
T Consensus       360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDDryFiSGSLD~Kv  434 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDDRYFISGSLDGKV  434 (712)
T ss_pred             cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCCCcEeecccccce
Confidence            4556789999999999999774 8999999999999999987666653    4666899999999 88999999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-------
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------  273 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-------  273 (498)
                      +||++...+......+..                 -|++++|.|||+..++|+.+|.+++|+....+......       
T Consensus       435 RiWsI~d~~Vv~W~Dl~~-----------------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  435 RLWSISDKKVVDWNDLRD-----------------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             EEeecCcCeeEeehhhhh-----------------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            999998877655444332                 69999999999999999999999999999887765443       


Q ss_pred             --ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc--EEEEEEcCCCCEEEEEeCCCcEEE
Q 010883          274 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKL  349 (498)
Q Consensus       274 --~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~dg~i~i  349 (498)
                        .|. .|+.+.|.|.+...+++.+.|..|+|||.+    ....+..++++...  -....|+.||++|++++.|..|++
T Consensus       498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi  572 (712)
T KOG0283|consen  498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI  572 (712)
T ss_pred             cccCc-eeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence              233 799999998777788899999999999997    66777777765432  345678899999999999999999


Q ss_pred             EeCCCCC
Q 010883          350 WDIRKMS  356 (498)
Q Consensus       350 wd~~~~~  356 (498)
                      |++....
T Consensus       573 W~~~~~~  579 (712)
T KOG0283|consen  573 WKNDSFN  579 (712)
T ss_pred             EeCCCCc
Confidence            9986543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4.7e-26  Score=212.17  Aligned_cols=257  Identities=25%  Similarity=0.342  Sum_probs=214.7

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      +.+++.+..+-.+++|+....         ..|...|.++..-..++.+++|+.|..+-+|.+........         
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~~---------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---------   65 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTREF---------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---------   65 (825)
T ss_pred             ccccceeeeeeccccccchhh---------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------
Confidence            344555555667788887542         24555677777767788999999999999998765433221         


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEE
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK  302 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  302 (498)
                             ..+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+.++.|+ |-+.++++|+.|+.++
T Consensus        66 -------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~  137 (825)
T KOG0267|consen   66 -------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLK  137 (825)
T ss_pred             -------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEeccccccccce
Confidence                   23688899999999999999999999999999999999999999999999999998 7788999999999999


Q ss_pred             EEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883          303 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR  382 (498)
Q Consensus       303 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      +||.+    ...+...+.+|...+..+.|+|+|++++.++.|..++|||+..                            
T Consensus       138 iwD~R----k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a----------------------------  185 (825)
T KOG0267|consen  138 IWDIR----KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA----------------------------  185 (825)
T ss_pred             ehhhh----ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc----------------------------
Confidence            99998    7888999999999999999999999999999999999999987                            


Q ss_pred             cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeE
Q 010883          383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML  462 (498)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l  462 (498)
                            +..+..|..|......      +.|.|..-+++.|+.|++|++||+++.+.+.........|.+++|+|++..+
T Consensus       186 ------gk~~~ef~~~e~~v~s------le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~  253 (825)
T KOG0267|consen  186 ------GKLSKEFKSHEGKVQS------LEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV  253 (825)
T ss_pred             ------cccccccccccccccc------cccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence                  3555566666533222      2466678889999999999999999999999988888999999999999988


Q ss_pred             EEEeCCC
Q 010883          463 VSSSWDG  469 (498)
Q Consensus       463 ~s~~~Dg  469 (498)
                      ++|..+.
T Consensus       254 ~~G~q~s  260 (825)
T KOG0267|consen  254 LSGEQIS  260 (825)
T ss_pred             ecCchhh
Confidence            8886543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.7e-23  Score=189.75  Aligned_cols=229  Identities=14%  Similarity=0.149  Sum_probs=181.1

Q ss_pred             cccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883          113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV  192 (498)
Q Consensus       113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  192 (498)
                      ..-++....++...++...+.|++++.+|.+..++.|+.||.+..++...+....... .....+.|.+++|+|++..|+
T Consensus        92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~~~~~i~  170 (691)
T KOG2048|consen   92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNPTGTKIA  170 (691)
T ss_pred             EEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecCCccEEE
Confidence            3445666666667778889999999999999999999999988888888775544443 334467899999999999999


Q ss_pred             EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883          193 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI  272 (498)
Q Consensus       193 ~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  272 (498)
                      .|+.||.|++||+.++...........  .+.      .+..--|+++.|..++ .|++|...|.|.+||...+.++..+
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d--~l~------k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~  241 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQTLHIITMQLD--RLS------KREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH  241 (691)
T ss_pred             ecccCceEEEEEcCCCceEEEeeeccc--ccc------cCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh
Confidence            999999999999998876552221110  000      0122358899998777 5999999999999999999999999


Q ss_pred             eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      ..|.+.|.+++.. ++++.+++++.|+.|..|.................|...|.+++..++  .|++|+.|..+.+-..
T Consensus       242 ~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  242 SCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             hhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            9999999999997 778899999999999988875332222234455678899999999877  8999999999888776


Q ss_pred             CC
Q 010883          353 RK  354 (498)
Q Consensus       353 ~~  354 (498)
                      +.
T Consensus       319 ~~  320 (691)
T KOG2048|consen  319 RE  320 (691)
T ss_pred             cc
Confidence            65

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=5.6e-24  Score=197.56  Aligned_cols=320  Identities=14%  Similarity=0.189  Sum_probs=231.9

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ..+.+|...|..++|+|.|.+|++.+.|.+-|+|--- .....+.+-.++-|...++|++|-+..-.+++|.....+|+|
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF  434 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF  434 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence            3568999999999999999999999999999998654 222355566667788899999999977778888889999999


Q ss_pred             ECCCCceeccc-----------------ccc------------ccccCcc----------cc------------------
Q 010883          204 DVGSGTMESLA-----------------NVT------------EIHDGLD----------FS------------------  226 (498)
Q Consensus       204 d~~~~~~~~~~-----------------~~~------------~~~~~~~----------~~------------------  226 (498)
                      +....-.....                 .++            ....+..          ..                  
T Consensus       435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL  514 (764)
T KOG1063|consen  435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL  514 (764)
T ss_pred             cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence            76421100000                 000            0000000          00                  


Q ss_pred             ---ccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC
Q 010883          227 ---AADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD  298 (498)
Q Consensus       227 ---~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  298 (498)
                         .+...||...|++++.+|+|+++|+++..     ..|++|+..+...+..+..|.-.|+.++|+ +++++|++.+.|
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRD  593 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRD  593 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecC
Confidence               01123899999999999999999998764     459999999998888999999999999998 899999999999


Q ss_pred             CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883          299 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP  378 (498)
Q Consensus       299 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (498)
                      .++.+|...............+.|..-|..+.|+|++.+|+|++.|++|++|.......                     
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d---------------------  652 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD---------------------  652 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh---------------------
Confidence            99999987533222233444778999999999999999999999999999999877421                     


Q ss_pred             cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc-EEEEEecCCeEEEEECCC-------Cc--E---EEEecc
Q 010883          379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVS-------GE--Q---VAALKY  445 (498)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~-------~~--~---~~~~~~  445 (498)
                                 +.+..+........+....+.+.+.++.. .+++|-..|.|.+|....       +.  .   +....+
T Consensus       653 -----------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~  721 (764)
T KOG1063|consen  653 -----------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG  721 (764)
T ss_pred             -----------hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence                       11111111111123334444555444443 788899999999999651       11  1   111235


Q ss_pred             CCCCeeeeEEcCCC----------CeEEEEeCCCcEEEecCC
Q 010883          446 HTSPVRDCSWHPSQ----------PMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       446 h~~~v~~l~~sp~~----------~~l~s~~~Dg~i~iw~~~  477 (498)
                      |.+.|+.+.|.|..          ..|++|+.|..++++++.
T Consensus       722 ~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  722 PDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             hHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            77889999999752          257999999999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.3e-25  Score=189.84  Aligned_cols=264  Identities=17%  Similarity=0.215  Sum_probs=203.9

Q ss_pred             cccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC
Q 010883          109 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ  188 (498)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  188 (498)
                      .|....+++.-...+.+.+..|.+.|..++++.  ..++++++|.+|+.|.++.. .... ...   ...+..+.-+..+
T Consensus        87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~t-ilg---~s~~~gIdh~~~~  159 (433)
T KOG0268|consen   87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHT-ILG---KSVYLGIDHHRKN  159 (433)
T ss_pred             cCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-ccee-eec---ccccccccccccc
Confidence            455566677777778899999999999999987  67888999999999998753 2222 222   2257777777777


Q ss_pred             CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe
Q 010883          189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      ..+++++.  .|.|||......+......                ...|.++.|+|.. ..|+++..|+.|.+||+.++.
T Consensus       160 ~~FaTcGe--~i~IWD~~R~~Pv~smswG----------------~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~  221 (433)
T KOG0268|consen  160 SVFATCGE--QIDIWDEQRDNPVSSMSWG----------------ADSISSVKFNPVETSILASCASDRSIVLYDLRQAS  221 (433)
T ss_pred             ccccccCc--eeeecccccCCccceeecC----------------CCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence            88888775  5999998765554433322                1268999999955 467777799999999999999


Q ss_pred             eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcE
Q 010883          268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI  347 (498)
Q Consensus       268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i  347 (498)
                      ++..+. ..-.-+.|+|+| +...|++|+.|..++.||++.   -..++....+|...|..++|+|.|+-|++|+.|.+|
T Consensus       222 Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI  296 (433)
T KOG0268|consen  222 PLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI  296 (433)
T ss_pred             ccceee-eeccccceecCc-cccceeeccccccceehhhhh---hcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence            887763 344568899995 888899999999999999984   346788899999999999999999999999999999


Q ss_pred             EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883          348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS  427 (498)
Q Consensus       348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  427 (498)
                      +||..+.+......                                  ..     .-+...++..||.|.+|+++||.|+
T Consensus       297 RIf~~~~~~SRdiY----------------------------------ht-----kRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  297 RIFPVNHGHSRDIY----------------------------------HT-----KRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             EEeecCCCcchhhh----------------------------------hH-----hhhheeeEEEEeccccEEEecCCCc
Confidence            99999874432211                                  11     1122335557777999999999999


Q ss_pred             eEEEEECCCCcEEE
Q 010883          428 CVYVYDLVSGEQVA  441 (498)
Q Consensus       428 ~i~iwd~~~~~~~~  441 (498)
                      .|++|.....+.+.
T Consensus       338 nvRlWka~Aseklg  351 (433)
T KOG0268|consen  338 NVRLWKAKASEKLG  351 (433)
T ss_pred             ceeeeecchhhhcC
Confidence            99999976655443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=5.8e-24  Score=183.86  Aligned_cols=214  Identities=19%  Similarity=0.273  Sum_probs=170.3

Q ss_pred             cccCCCCceEEEEEcCCC--CEEEEEECCCeEEEEECCCC-------------eEEEEEeecCCCceeEEEEEeCCCC-C
Q 010883          126 PVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-------------WKIQKDILAKSLRWTVTDTSLSPDQ-R  189 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg--~~la~~~~dg~i~vw~~~~~-------------~~~~~~~~~~~~~~~v~~~~~sp~~-~  189 (498)
                      ....|.+.|+.+.-++-|  .+.|+-+..|.|.||++...             .....+....+|...=..++|||-. .
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            445678888888888765  46666678899999998532             1223344556788888999999932 3


Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK-  267 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~-  267 (498)
                      .|++|..-+.|++|...++....-..             ...+|+..|..++|||. ...|++|+.||+|+|||++.+. 
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~-------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~  292 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQR-------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK  292 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCc-------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence            47788888899999998876533222             22368889999999994 4589999999999999999883 


Q ss_pred             --eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCC
Q 010883          268 --LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD  344 (498)
Q Consensus       268 --~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d  344 (498)
                        ++. ...|.+.|+.|.|+ ....+|++|+.||+++|||+|..+ .++++..+.-|..+|++|.|+|. ...|++++.|
T Consensus       293 ~~~~~-~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D  369 (440)
T KOG0302|consen  293 KAAVS-TKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGED  369 (440)
T ss_pred             cceeE-eeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence              333 36899999999998 555599999999999999999776 45899999999999999999995 4678889999


Q ss_pred             CcEEEEeCCCC
Q 010883          345 QAIKLWDIRKM  355 (498)
Q Consensus       345 g~i~iwd~~~~  355 (498)
                      .+|.+||+...
T Consensus       370 ~QitiWDlsvE  380 (440)
T KOG0302|consen  370 NQITIWDLSVE  380 (440)
T ss_pred             CcEEEEEeecc
Confidence            99999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=5.4e-24  Score=178.26  Aligned_cols=234  Identities=19%  Similarity=0.312  Sum_probs=179.2

Q ss_pred             CCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEE
Q 010883          174 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA  251 (498)
Q Consensus       174 ~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~  251 (498)
                      .|.+.|+++...+ .|+++++|+.||.|.+||++.............+..+ .......+|...|.++.|-| |.-.+.+
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCccceeeeeeeEEeeecCceeec
Confidence            4567899999988 7899999999999999999865421111111111000 11222347999999999999 6668899


Q ss_pred             EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC--CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      ++-|.+++|||.++.+....+ ..++.|.+-+++|-.  ..++++|..|-.|++.|+.    .+.....+.+|.+.|.++
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vlaV  194 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLAV  194 (397)
T ss_pred             ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEEE
Confidence            999999999999998876666 456677777776432  3578888899999999998    888999999999999999


Q ss_pred             EEcCCCCE-EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883          330 DSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH  408 (498)
Q Consensus       330 ~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (498)
                      .|+|...+ |++|+.||.|++||++...                                                    
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRras----------------------------------------------------  222 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRAS----------------------------------------------------  222 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeeccc----------------------------------------------------
Confidence            99998765 6789999999999998621                                                    


Q ss_pred             eccccCCCCcEEEEEecCCeEEEEECCCCcE---EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                                        |.+++.|..+++.   +..-..|.+.|+.++|+.++.++++++.|..+++|+...+....
T Consensus       223 ------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  223 ------------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             ------------------ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence                              2233444333322   22334799999999999999999999999999999998876543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=2e-23  Score=182.38  Aligned_cols=327  Identities=19%  Similarity=0.207  Sum_probs=211.5

Q ss_pred             CCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          131 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       131 ~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ..+|+.+.|.+++. .||+|+.|..|++|.++.+      ..+.-......|...|+++.|+|+|..||+|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            56899999999876 9999999999999988653      2444455667888899999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      ....-...............-.......+|...|..++|+|++.++++++.|..+++||+..|+....+..|...+..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            87631110000000000000011122346888999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccC-----------------CCceeEEeccccc----cEEEEEEcCCCCEEEEEe
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNV-----------------KGKPAGVLMGHLE----GITFIDSRGDGRYLISNG  342 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------~~~~~~~~~~~~~----~v~~l~~~~~~~~l~s~~  342 (498)
                      |- +.++++++-+.|...+.+.+.....                 .+...+.+  |.+    -...++|+|+|.+|++.+
T Consensus       173 wD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  173 WD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             cc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhhhhhhcccCCCCcEEEccc
Confidence            95 8889999999998777766531100                 00011111  211    134578899999888754


Q ss_pred             C----CCcE-----EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          343 K----DQAI-----KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       343 ~----dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      .    .+.+     ++++-.....+........              ...+...+......+........    .+.+  
T Consensus       250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~--------------k~~lavr~~pVy~elrp~~~~~~----~~~l--  309 (434)
T KOG1009|consen  250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK--------------KPALAVRFSPVYYELRPLSSEKF----LFVL--  309 (434)
T ss_pred             ceeeeCCceeeceeEeeccccccCceeecCCCC--------------cceEEEEeeeeEEEecccccccc----cccc--
Confidence            2    1222     2222221111100000000              00000000000001111000000    1111  


Q ss_pred             CCCCcEEEEEecCCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                       |-+-.+|+++. ..|+|||.++..++.... -|-.+|++++|++||..|+..+.||...+-.+...+.-
T Consensus       310 -pyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  310 -PYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             -ccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence             23445556655 569999999988877764 58889999999999999999999999887766655443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=6.1e-24  Score=197.38  Aligned_cols=239  Identities=23%  Similarity=0.303  Sum_probs=196.1

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEE-EEEcC-CCCE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-LKFST-DGRE  248 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~-~g~~  248 (498)
                      ...+|...|..+++.+.. .++++|.||++++|+-..++........              +|.+-|.+ +++-+ ++-.
T Consensus         9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~--------------~~~g~i~~~i~y~e~~~~~   73 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE--------------GPKGFIANSICYAESDKGR   73 (745)
T ss_pred             EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc--------------cCcceeeccceeccccCcc
Confidence            446788788888876544 7889999999999998766654432221              23334444 67765 5556


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEE
Q 010883          249 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF  328 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~  328 (498)
                      +++|+.|++|.+|.+.+..+...+.+|...|.|+... .++. +++||.|.++++|-.      ++....+.+|...|++
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~-~iSgSWD~TakvW~~------~~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG-EDGT-LISGSWDSTAKVWRI------GELVYSLQGHTASVWA  145 (745)
T ss_pred             eEeecccceEEEEecCCCCchhhhhccccceeeeecC-CcCc-eEecccccceEEecc------hhhhcccCCcchheee
Confidence            9999999999999999999999999999999999975 5555 899999999999985      4666679999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883          329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH  408 (498)
Q Consensus       329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (498)
                      ++.-|++ .+++|+.|.+|++|.-.                                    ..+.++.+|..........
T Consensus       146 v~~l~e~-~~vTgsaDKtIklWk~~------------------------------------~~l~tf~gHtD~VRgL~vl  188 (745)
T KOG0301|consen  146 VASLPEN-TYVTGSADKTIKLWKGG------------------------------------TLLKTFSGHTDCVRGLAVL  188 (745)
T ss_pred             eeecCCC-cEEeccCcceeeeccCC------------------------------------chhhhhccchhheeeeEEe
Confidence            9999887 89999999999999863                                    5677888887544433221


Q ss_pred             eccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                             +...+++++.||.|++|++ +|+.+.++.+|..-|.+++..+++..+++++.|++++||+..
T Consensus       189 -------~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  189 -------DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             -------cCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence                   4556899999999999999 899999999999999999988888899999999999999976

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-22  Score=187.37  Aligned_cols=283  Identities=14%  Similarity=0.233  Sum_probs=218.7

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      -.++|.++||+.+.+.||.+-.+|.|.+|++..++.....+.. +....|.+++|++ +..|.+.+.+|.|.-||+.+.+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence            3678999999999999999999999999999998777666554 5566899999994 5567788889999999999887


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--EeccCCCeeEEEEeCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDE  287 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~  287 (498)
                      .......                ..+.|++++.+|.+..++.|+.||.++.++...++....  +...++.|.+++|+ +
T Consensus       102 ~~~~~d~----------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~  164 (691)
T KOG2048|consen  102 QKYNIDS----------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-P  164 (691)
T ss_pred             eeEEecC----------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec-C
Confidence            6544432                233899999999999999999999888888888876543  33566899999997 8


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEe----cc----ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----MG----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~~----~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      ++..+++|+.||.|++||..    .+..+...    .+    ...-|+++.|-.+ ..|++|...|+|.+||...+.   
T Consensus       165 ~~~~i~~Gs~Dg~Iriwd~~----~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gT---  236 (691)
T KOG2048|consen  165 TGTKIAGGSIDGVIRIWDVK----SGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGT---  236 (691)
T ss_pred             CccEEEecccCceEEEEEcC----CCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcc---
Confidence            88889999999999999997    44443311    11    2234677777754 469999999999999998743   


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                                                     .+..+..|...      ..+++..+++.++++++.|+.|.-|...+++.
T Consensus       237 -------------------------------LiqS~~~h~ad------Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  237 -------------------------------LIQSHSCHDAD------VLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             -------------------------------hhhhhhhhhcc------eeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence                                           33333333321      12234455889999999999999998877643


Q ss_pred             ----EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          440 ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       440 ----~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                          ......|...|.+++..++  .|++|+.|+++.+-....
T Consensus       280 ~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  280 EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence                2223478889999999877  899999999988866544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.1e-25  Score=209.64  Aligned_cols=202  Identities=28%  Similarity=0.491  Sum_probs=183.9

Q ss_pred             ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883          233 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK  312 (498)
Q Consensus       233 h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  312 (498)
                      |...+.++..-..++.+++|+.|-.+-+|.+.....+..+.+|..+|.++.|. ....+|++|+.+|+|++||+.    .
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~-~~E~LlaagsasgtiK~wDle----e  101 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD-TSERLLAAGSASGTIKVWDLE----E  101 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC-cchhhhcccccCCceeeeehh----h
Confidence            55577888877788899999999999999998888888899999999999997 788899999999999999998    8


Q ss_pred             CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       313 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      .+.++.+.+|...+..+.|+|-+.+++.|+.|+.+++||++.                                  ..+.
T Consensus       102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------------------------------~Gc~  147 (825)
T KOG0267|consen  102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------------------------------KGCS  147 (825)
T ss_pred             hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----------------------------------cCce
Confidence            888999999999999999999999999999999999999997                                  3677


Q ss_pred             EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEE
Q 010883          393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV  472 (498)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~  472 (498)
                      ..+.+|.....+.      .|+|+|++++.|+.|..++|||+..|+.+..|..|.+.|..+.|+|..-++++|+.|++|+
T Consensus       148 ~~~~s~~~vv~~l------~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  148 HTYKSHTRVVDVL------RLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             eeecCCcceeEEE------eecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence            8888877544443      7888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCC
Q 010883          473 RWEFPGN  479 (498)
Q Consensus       473 iw~~~~~  479 (498)
                      +||+.+-
T Consensus       222 f~dletf  228 (825)
T KOG0267|consen  222 FWDLETF  228 (825)
T ss_pred             eecccee
Confidence            9999843

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3.5e-24  Score=191.73  Aligned_cols=250  Identities=21%  Similarity=0.304  Sum_probs=199.6

Q ss_pred             CCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          174 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       174 ~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      .|..-|.++.+|...+++.+|+. |-|+|||+...... .+..+...            ....-|.++.+.|||+.|++|
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl------------~rdnyiRSckL~pdgrtLivG  483 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL------------NRDNYIRSCKLLPDGRTLIVG  483 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccccc------------CcccceeeeEecCCCceEEec
Confidence            56667889999999999999875 67999999754211 11111111            112268999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeEE--EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          253 SSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      +.-.++.|||+....+...  +....-.+..++.+ ++.++.+++..||.|.|||++    ....+..+.+|.+.+.||.
T Consensus       484 GeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLh----nq~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCID  558 (705)
T ss_pred             cccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcc----cceeeecccCCCCCceeEE
Confidence            9999999999987654322  33333456778887 889999999999999999998    8889999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      +++||..|.+|+-|.+|+.||++.......                                     |.    ...-+|+
T Consensus       559 is~dGtklWTGGlDntvRcWDlregrqlqq-------------------------------------hd----F~SQIfS  597 (705)
T KOG0639|consen  559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-------------------------------------HD----FSSQIFS  597 (705)
T ss_pred             ecCCCceeecCCCccceeehhhhhhhhhhh-------------------------------------hh----hhhhhee
Confidence            999999999999999999999998543221                                     11    1122467


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      +.++|++.+|++|-.++.+.|.... +.....+..|.+-|.++.|.+-|+++++.+.|+.+..|...-+...-
T Consensus       598 Lg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  598 LGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             cccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence            7788899999999999999998864 44456667799999999999999999999999999999988776543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=1.5e-23  Score=181.44  Aligned_cols=263  Identities=21%  Similarity=0.257  Sum_probs=190.3

Q ss_pred             CCCceeEEEEEeCCCC--CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCE
Q 010883          173 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE  248 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~--~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~  248 (498)
                      ..|.+.++.+.-++-+  .+.++-+..|.|+||++...-..........+....-+.....+|...=+.++|||  .| .
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~  226 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R  226 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence            4566678888777754  46666778999999998642110000000001111112233457888889999999  44 4


Q ss_pred             EEEEeCCCeEEEEECCCCeee---EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc
Q 010883          249 LVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG  325 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  325 (498)
                      |++|..-+.|++|...++...   ..+.+|...|..++|+|.....|++||.||+|+|||+|...  .+.....+.|.+.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--~~~~~~~kAh~sD  304 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--KKAAVSTKAHNSD  304 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC--ccceeEeeccCCc
Confidence            888888889999999887643   23557999999999999899999999999999999999442  2333344889999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883          326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI  405 (498)
Q Consensus       326 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (498)
                      |+.|.|+.+..+|++|+.||+++|||+|..+.                               ++++..|+.|....  .
T Consensus       305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~-------------------------------~~pVA~fk~Hk~pI--t  351 (440)
T KOG0302|consen  305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKS-------------------------------GQPVATFKYHKAPI--T  351 (440)
T ss_pred             eeeEEccCCcceeeecCCCceEEEEEhhhccC-------------------------------CCcceeEEeccCCe--e
Confidence            99999999888999999999999999998543                               47888898888543  4


Q ss_pred             EEEeccccCCCCcEEEEEecCCeEEEEECCCCcE----------------EEEeccC--CCCeeeeEEcCCCC-eEEEEe
Q 010883          406 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----------------VAALKYH--TSPVRDCSWHPSQP-MLVSSS  466 (498)
Q Consensus       406 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----------------~~~~~~h--~~~v~~l~~sp~~~-~l~s~~  466 (498)
                      .+.|+|.   +...|++++.|.+|.|||+.--.-                .+.+--|  ...|..+.|++.-+ +|++.+
T Consensus       352 sieW~p~---e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa  428 (440)
T KOG0302|consen  352 SIEWHPH---EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA  428 (440)
T ss_pred             EEEeccc---cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence            4455554   567889999999999999853210                0112224  34688999999887 888888


Q ss_pred             CCCcEEEec
Q 010883          467 WDGDVVRWE  475 (498)
Q Consensus       467 ~Dg~i~iw~  475 (498)
                      .||. .||.
T Consensus       429 ~dGf-nVfk  436 (440)
T KOG0302|consen  429 IDGF-NVFK  436 (440)
T ss_pred             ccce-eEEE
Confidence            8984 4443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.1e-23  Score=185.99  Aligned_cols=195  Identities=21%  Similarity=0.239  Sum_probs=159.4

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEE------------------EeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEE
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQK------------------DILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHI  202 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~------------------~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~i  202 (498)
                      -|+++|.|+.|..|.|||+.--..+..                  .....+|...|.+++|+..- +.||+||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            368999999999999999863211111                  11234688888899998754 68889999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      ||+.++++.....                .|...|.++.|+| ....|++|+.|++|.+.|.+........-...+.|-.
T Consensus       271 WD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk  334 (463)
T KOG0270|consen  271 WDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK  334 (463)
T ss_pred             EEcCCCCcceehh----------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence            9999998866554                2566899999999 5678999999999999999854333333356688999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      ++|.|.....++++..||+|+-+|+|.   .++++.++..|.++|.++++++. ..++++++.|+.|++|++...
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~---~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRN---PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCC---CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            999988889999999999999999993   45899999999999999999875 457889999999999999863

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.6e-24  Score=212.51  Aligned_cols=292  Identities=19%  Similarity=0.326  Sum_probs=220.8

Q ss_pred             EEEEEcCCCC-EEEEEE----------CCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEeCCCCCe----EEEEECC
Q 010883          135 YVSQFSADGS-LFVAGF----------QASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRH----LVYASMS  197 (498)
Q Consensus       135 ~~~~~s~dg~-~la~~~----------~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~----l~~~s~d  197 (498)
                      -.++|||++. ++|+|.          .+.++.||.+......  .+...........+.++|.+.+..    ||.|..|
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence            3578999986 666543          3455667765432111  111222223346889999997765    8888899


Q ss_pred             CeEEEEECCCC---ceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883          198 PIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL  273 (498)
Q Consensus       198 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~  273 (498)
                      |.|.+||...-   .......             ....|.+.|..+.|++... .||+|+.+|.|.|||++.-+......
T Consensus        90 G~I~ly~p~~~~~~~~~~~la-------------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~  156 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLA-------------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG  156 (1049)
T ss_pred             CceEEecchhhccCcchHHHh-------------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC
Confidence            99999997652   2111111             1225888999999999554 99999999999999998865544432


Q ss_pred             --ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc--cEEEEEEcCCC-CEEEEEeCCC---
Q 010883          274 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDG-RYLISNGKDQ---  345 (498)
Q Consensus       274 --~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~-~~l~s~~~dg---  345 (498)
                        ...+.|.+++|+....++|++++.+|.+.|||++    ..+++..+..+..  .+..++|+|+. ..|++++.|.   
T Consensus       157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr----~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P  232 (1049)
T KOG0307|consen  157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR----KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP  232 (1049)
T ss_pred             CCCCcccceEeccchhhhHHhhccCCCCCceecccc----CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence              2457899999997778899999999999999999    6677766665554  47789999986 3466666553   


Q ss_pred             cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec
Q 010883          346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  425 (498)
                      .|.+||+|...                                 ..++.+.+|.  ..++...|++.   |..+|++++.
T Consensus       233 viqlWDlR~as---------------------------------sP~k~~~~H~--~GilslsWc~~---D~~lllSsgk  274 (1049)
T KOG0307|consen  233 VIQLWDLRFAS---------------------------------SPLKILEGHQ--RGILSLSWCPQ---DPRLLLSSGK  274 (1049)
T ss_pred             eeEeecccccC---------------------------------Cchhhhcccc--cceeeeccCCC---CchhhhcccC
Confidence            59999999743                                 4566677777  45666666665   6799999999


Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCC
Q 010883          426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      |+.|.+|+.++++.+..+......+..+.|+|..+ .++.++-||.|-|+.+.+...
T Consensus       275 D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  275 DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             CCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence            99999999999999999988888999999999988 888889999999999987763

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2e-23  Score=178.51  Aligned_cols=293  Identities=16%  Similarity=0.211  Sum_probs=202.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  221 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (498)
                      +.+|++...|.|++||..++..+...   .++...++.+.|..  ....+.+++.||+|++||++.......+...... 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f---k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF---KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee---cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence            67889999999999999998666544   45555778888876  4567889999999999999987655544433211 


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCee-eEEE-eccCCCeeEEEEeCCCCCEEEEe
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKL-SLRI-LAHTSDVNTVCFGDESGHLIYSG  295 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~  295 (498)
                                  ..+..|++.+..++.+++|+.    +-.|.+||++..+. +..+ ..|...|+++.|+|.+.++|++|
T Consensus       117 ------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG  184 (376)
T KOG1188|consen  117 ------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG  184 (376)
T ss_pred             ------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence                        126778888778888888763    67799999998776 4444 37999999999999999999999


Q ss_pred             eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCccccccccee
Q 010883          296 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW  374 (498)
Q Consensus       296 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  374 (498)
                      |.||.|.+||+...+.. ..+.....|...|..+.|..++ +.|.+-+...+..+|++...........+...       
T Consensus       185 SvDGLvnlfD~~~d~Ee-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~-------  256 (376)
T KOG1188|consen  185 SVDGLVNLFDTKKDNEE-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS-------  256 (376)
T ss_pred             cccceEEeeecCCCcch-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch-------
Confidence            99999999999744322 2333344577889999999877 45888888999999999986643322111000       


Q ss_pred             ecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECC---C---CcEEEEecc-C
Q 010883          375 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLV---S---GEQVAALKY-H  446 (498)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~---~---~~~~~~~~~-h  446 (498)
                                       ............++.++.    ..+....+.++. -|...++-+.   +   .+.+..+.+ |
T Consensus       257 -----------------~~d~r~~~~~dY~I~~~~----~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~  315 (376)
T KOG1188|consen  257 -----------------ADDLRKEDNCDYVINEHS----PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH  315 (376)
T ss_pred             -----------------hhhHHhhhhhhheeeccc----CCCcceEEEeccccCceeEEEeeecccccccCccccccCCc
Confidence                             000000000011111111    113444444443 4555554333   3   344556665 7


Q ss_pred             CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      ...|+++.|...+.++.|||.||.+.+|......+
T Consensus       316 ~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e  350 (376)
T KOG1188|consen  316 EEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATE  350 (376)
T ss_pred             HHHHHHHhhhcccceeeccCCCceEEEEecCCccc
Confidence            78899999998889999999999999999654433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=1.3e-22  Score=172.52  Aligned_cols=309  Identities=20%  Similarity=0.269  Sum_probs=219.9

Q ss_pred             ccccCCCCceEEEEEcC-----CCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCC----CCeEEE
Q 010883          125 WPVDQTTSRAYVSQFSA-----DGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPD----QRHLVY  193 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~-----dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~  193 (498)
                      .....|+.+|+.++|++     +-..+|+.+. ..+.+|+....-  .+.+......+......++|+-+    ..++|.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34567899999999985     2245666654 478899876542  33333334456777888898764    348899


Q ss_pred             EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883          194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI  272 (498)
Q Consensus       194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~  272 (498)
                      ++.-|.|+|.|+.+++......                +|...|+.+.+.|+. +++++++.|..|++|++++..++..+
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~----------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf  174 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYR----------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF  174 (385)
T ss_pred             ecceeEEEEEecchhhhcccee----------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence            9999999999999887654443                688899999999965 68899999999999999999998876


Q ss_pred             e---ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC--------------C-------ceeE---Eecccccc
Q 010883          273 L---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--------------G-------KPAG---VLMGHLEG  325 (498)
Q Consensus       273 ~---~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------~-------~~~~---~~~~~~~~  325 (498)
                      -   +|.+.|.++.|+ .++.+|++++.|.++++|++......              .       .+..   +-.-|...
T Consensus       175 GG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny  253 (385)
T KOG1034|consen  175 GGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY  253 (385)
T ss_pred             cccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence            4   799999999998 88899999999999999998721100              0       0000   11235566


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883          326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI  405 (498)
Q Consensus       326 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (498)
                      |-|+.|-  |.++++-+-++.|..|.............              ++.      .+...+..++-.......+
T Consensus       254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vk--------------p~e------s~~Ti~~~~~~~~c~iWfi  311 (385)
T KOG1034|consen  254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVK--------------PPE------SATTILGEFDYPMCDIWFI  311 (385)
T ss_pred             HHHHHHH--hhheeecccCceEEEEecchhhhhhhccC--------------CCc------cceeeeeEeccCccceEEE
Confidence            6666664  47899989999999998844322110000              000      0012233333333223333


Q ss_pred             EEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE--EEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          406 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       406 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ...    |.|-++.||.|...|.|++||+...++.  .++.  .....|...+|+.|+.+|+...+|++|.-||.-
T Consensus       312 rf~----~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  312 RFA----FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEe----ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            333    4456899999999999999999887653  2222  124579999999999999999999999999853

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.8e-24  Score=201.06  Aligned_cols=251  Identities=20%  Similarity=0.324  Sum_probs=191.2

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCC
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD  256 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg  256 (498)
                      ...+|...++-..|+.++. ..+.|+.+..........+.....         ..-...+..+.|.. +.++||+++..|
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k---------qn~~~S~~DVkW~~~~~NlIAT~s~nG  110 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK---------QNKFYSAADVKWGQLYSNLIATCSTNG  110 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccc---------cceeeehhhcccccchhhhheeecCCC
Confidence            4666777788888887765 367777766543222111110000         00112566788885 567899999999


Q ss_pred             eEEEEECCC---CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          257 CIYVYDLEA---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       257 ~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      .|.+||+..   .+.+..+..|...++++.|++...++|++|+.||+|++||++    ......++.+..+.|..+.|+|
T Consensus       111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR----~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR----SKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----cccccccccccchhhhceeecc
Confidence            999999987   566677889999999999999999999999999999999999    6677777888889999999998


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          334 -DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       334 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                       .+..|+++...|.+++||+|...                                 +....+..|....      ++..
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~---------------------------------r~~~k~~AH~GpV------~c~n  227 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPD---------------------------------RCEKKLTAHNGPV------LCLN  227 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCch---------------------------------hHHHHhhcccCce------EEEe
Confidence             46789999999999999999743                                 4455556666322      3336


Q ss_pred             cCCCCcEEEEEecCCeEEEEECCCCcE--EEEeccCCCCeeeeEEcCCCC-eEEEEe--CCCcEEEecCCCCCCC
Q 010883          413 YSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSS--WDGDVVRWEFPGNGEA  482 (498)
Q Consensus       413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~-~l~s~~--~Dg~i~iw~~~~~~~~  482 (498)
                      |+|++.+||+|+.|+.|+|||..+++.  +.++. ...+|..+.|-|+.+ .|++++  .|-.|+|||+...-.+
T Consensus       228 whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  228 WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             ecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            677999999999999999999986543  34443 357899999999988 677775  5888999999876543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=1.8e-21  Score=180.82  Aligned_cols=256  Identities=17%  Similarity=0.163  Sum_probs=181.0

Q ss_pred             ceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCce
Q 010883          133 RAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTM  210 (498)
Q Consensus       133 ~v~~~~~s~dg~~l-a~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~  210 (498)
                      .+.+++|+|+|+.+ ++++.++.|++||..+++......   .+. .+..++|+|+++.++++ +.++.|++||+.+++.
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~  107 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKV  107 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence            46789999999976 566778999999999875544322   122 35678999999977665 4589999999988654


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  289 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  289 (498)
                      ......                 ...+.+++|+|+|++++++..++ .+.+||..+++....+. ....+.+++|+ +++
T Consensus       108 ~~~~~~-----------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s-~dg  168 (300)
T TIGR03866       108 LAEIPV-----------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT-ADG  168 (300)
T ss_pred             EeEeeC-----------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC-CCC
Confidence            332221                 11467899999999999988765 46778998887765543 33456789997 677


Q ss_pred             CEEE-EeeCCCeEEEEcCccccCCCceeEEecccc-------ccEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCCCccc
Q 010883          290 HLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-------EGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNAS  360 (498)
Q Consensus       290 ~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~  360 (498)
                      ++|+ ++..++.|++||+.    .++.+..+..+.       .....++|+|+++++++ .+.++.+.+||+++..    
T Consensus       169 ~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----  240 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----  240 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----
Confidence            7765 55569999999997    555444443221       12346889999998654 4456789999987632    


Q ss_pred             cccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcE
Q 010883          361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQ  439 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~  439 (498)
                                                    .+.......       ..+.+.|+|+|++|++++ .+|.|.+||+.++++
T Consensus       241 ------------------------------~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       241 ------------------------------VLDYLLVGQ-------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             ------------------------------EEEEEEeCC-------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence                                          222211111       123446788999998874 589999999999999


Q ss_pred             EEEeccCCCCeeeeEEcC
Q 010883          440 VAALKYHTSPVRDCSWHP  457 (498)
Q Consensus       440 ~~~~~~h~~~v~~l~~sp  457 (498)
                      +..++.. ...+.++++|
T Consensus       284 ~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       284 IKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEEEcc-cccceeEeCC
Confidence            9999754 5558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.3e-22  Score=179.26  Aligned_cols=302  Identities=15%  Similarity=0.169  Sum_probs=207.5

Q ss_pred             eEEEEEcCCCCEEEEEECCC---e--EEEEECCC-CeEEEEEeecCCCceeEEEEEeCC-------CCCeEEEEECCCeE
Q 010883          134 AYVSQFSADGSLFVAGFQAS---Q--IRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-------DQRHLVYASMSPIV  200 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg---~--i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp-------~~~~l~~~s~d~~i  200 (498)
                      .-.+..-|+.++++++-.+.   .  |+||+-.. ...++.-.....   ...|++|..       .|+++|.|+.|..|
T Consensus       128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpa---fPLC~ewld~~~~~~~~gNyvAiGtmdp~I  204 (463)
T KOG0270|consen  128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPA---FPLCIEWLDHGSKSGGAGNYVAIGTMDPEI  204 (463)
T ss_pred             cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccC---cchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence            34556677777777765432   2  55665443 222222222222   345666643       35799999999999


Q ss_pred             EEEECCCCcee-ccccccc----cccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEec
Q 010883          201 HIVDVGSGTME-SLANVTE----IHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILA  274 (498)
Q Consensus       201 ~iwd~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~  274 (498)
                      .|||+.--... ....+..    .............+|+..|.+++|+..- +.||+|+.|.+|.+||+.++++...+..
T Consensus       205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~  284 (463)
T KOG0270|consen  205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH  284 (463)
T ss_pred             EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence            99998632211 1111110    0000111223345799999999999754 4789999999999999999999999988


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~  353 (498)
                      |.+.|.++.|+|..+.+|++|+.|++|.+.|.|.....+    ..-.-.+.|-.++|.|.. ..++++..||+|+-+|+|
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~----~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG----KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             cCCceeEEEecCCCceEEEeccccceEEeeeccCccccC----ceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence            999999999999999999999999999999998422111    111235778899999864 567788899999999999


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd  433 (498)
                      ...                                 +++.+++.|......+  .++..   ...++++++.|+.|.+|+
T Consensus       361 ~~~---------------------------------~~vwt~~AHd~~ISgl--~~n~~---~p~~l~t~s~d~~Vklw~  402 (463)
T KOG0270|consen  361 NPG---------------------------------KPVWTLKAHDDEISGL--SVNIQ---TPGLLSTASTDKVVKLWK  402 (463)
T ss_pred             CCC---------------------------------CceeEEEeccCCcceE--EecCC---CCcceeeccccceEEEEe
Confidence            853                                 6777778887543333  23222   356899999999999999


Q ss_pred             CCCCcE--EEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCC
Q 010883          434 LVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       434 ~~~~~~--~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +..-..  +..-.-.-+...|.++.|+-. .|+.|+..+.++|||+....
T Consensus       403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            865433  221111123466778888776 77888888899999998764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=176.52  Aligned_cols=300  Identities=16%  Similarity=0.147  Sum_probs=223.4

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS  197 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d  197 (498)
                      ...+.+|.+-|+++.||.++++||+|+.|..++||+++.-      +++.  +....|...|.|++|....+.|.+|..+
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~--~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG--VMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce--eccCccccceEEEEEccCCeeEecCCCc
Confidence            3567899999999999999999999999999999998642      2222  2345677899999999999999999999


Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-ee--EEEec
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LS--LRILA  274 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~--~~~~~  274 (498)
                      ++|.+-|+++.+.+.+.....              ..+.|+.+..+|..+.|++.+.++.|.+||..... ..  ..+..
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~--------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENN--------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             ceeEeeecccceeeeeecccC--------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence            999999999988766554322              23479999999988899999999999999998655 21  22223


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc---cccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  351 (498)
                      .......+.|+|....+|++.+..+-+.+||++.....--....+.+.   ...-..+.|+|+|..|++--....-.+||
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D  272 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD  272 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence            445678899999999999999999999999998332111111111111   12235678999999999887777777888


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc----cCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK----GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS  427 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  427 (498)
                      +.+..                                 -.+..+.    +.....++..++|.     +...+++|+.+-
T Consensus       273 ~~S~R---------------------------------~~V~k~D~N~~GY~N~~T~KS~~F~-----~D~~v~tGSD~~  314 (609)
T KOG4227|consen  273 FISQR---------------------------------CFVLKSDHNPNGYCNIKTIKSMTFI-----DDYTVATGSDHW  314 (609)
T ss_pred             eeccc---------------------------------ceeEeccCCCCcceeeeeeeeeeee-----cceeeeccCccc
Confidence            87621                                 1112222    11223344445444     344599999999


Q ss_pred             eEEEEECCCC-----------------------cEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          428 CVYVYDLVSG-----------------------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       428 ~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      .|++|.+...                       +.+..+++|.+-++.+.|+|...+|++.+....++||.-.
T Consensus       315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            9999987531                       1345678999999999999999999999999999999743

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.90  E-value=3.4e-23  Score=170.87  Aligned_cols=299  Identities=16%  Similarity=0.204  Sum_probs=205.1

Q ss_pred             cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883          119 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  198 (498)
Q Consensus       119 ~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~  198 (498)
                      +|..+.+.|++|.+.|+++.|..+++ |.+|..-|.|.+|++.+........  ..+...|+.+.--|+ ..|.+-+.|+
T Consensus         2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~-d~l~tqgRd~   77 (323)
T KOG0322|consen    2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPN-DSLDTQGRDP   77 (323)
T ss_pred             CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh--hhccceeeceeecCC-cchhhcCCCc
Confidence            46677888999999999999998876 8889999999999999864333221  145568999998887 5677888999


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-----CC----EEEEEeCCC-eEEEEECCCCee
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GR----ELVAGSSDD-CIYVYDLEANKL  268 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----g~----~l~~g~~dg-~i~vwd~~~~~~  268 (498)
                      .+.+|++..+.......+                   .++++-|.+.     ++    .++.-+... .+.+-|......
T Consensus        78 ~L~lw~ia~s~~i~i~Si-------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq  138 (323)
T KOG0322|consen   78 LLILWTIAYSAFISIHSI-------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ  138 (323)
T ss_pred             eEEEEEccCcceEEEeee-------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence            999999987665444332                   3344444331     11    111111100 022222222111


Q ss_pred             eEEE----eccCCCeeEEEEeCCCC--CEEEEeeCCCeEEEEcCcccc------CCCceeEEeccccccEEEEEEcCCCC
Q 010883          269 SLRI----LAHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRCLN------VKGKPAGVLMGHLEGITFIDSRGDGR  336 (498)
Q Consensus       269 ~~~~----~~~~~~v~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~v~~l~~~~~~~  336 (498)
                      +...    .+..+.+.|..+-...+  -++++|..+|.+.+||+....      ...+.......|..+|.++.+.+.-.
T Consensus       139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~  218 (323)
T KOG0322|consen  139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD  218 (323)
T ss_pred             eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence            1111    13345677776532222  367788899999999997321      11134445567999999999988777


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC
Q 010883          337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG  416 (498)
Q Consensus       337 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  416 (498)
                      .=++|+.+..+..|.+.........                            .....++....        -...+-||
T Consensus       219 rGisgga~dkl~~~Sl~~s~gslq~----------------------------~~e~~lknpGv--------~gvrIRpD  262 (323)
T KOG0322|consen  219 RGISGGADDKLVMYSLNHSTGSLQI----------------------------RKEITLKNPGV--------SGVRIRPD  262 (323)
T ss_pred             CCcCCCccccceeeeeccccCcccc----------------------------cceEEecCCCc--------cceEEccC
Confidence            7788888889999998763211110                            11111111110        11234569


Q ss_pred             CcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          417 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       417 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      ++++|+++.|+.||||..++.++++.++.|...|++++|+|+..++|+++.|++|.+|++
T Consensus       263 ~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  263 GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999999999999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=3.7e-22  Score=178.58  Aligned_cols=263  Identities=15%  Similarity=0.165  Sum_probs=196.4

Q ss_pred             ceEEEEEcCCCCEEEE--EECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          133 RAYVSQFSADGSLFVA--GFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~--~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      .+.++.|+.... |++  .+.|..|++|.-.... .+.......+.  .-.|++......|+++|+..+.|+|||++...
T Consensus        36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL  112 (673)
T ss_pred             cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence            389999988765 443  3457889999765430 11111111121  33444444555899999999999999998554


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-CCCeeEEEEeCCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDES  288 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~  288 (498)
                      +....+                +|...|+++.++....+||+++..|.|.|..+.++.....+... ...|.-+.|++..
T Consensus       113 ~hr~lk----------------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk  176 (673)
T KOG4378|consen  113 IHRFLK----------------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK  176 (673)
T ss_pred             Hhhhcc----------------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc
Confidence            433332                57789999999999999999999999999999998877777543 3456689999888


Q ss_pred             CCEEEEeeCCCeEEEEcCccccCCCce-eEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883          289 GHLIYSGSDDNLCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                      ..+|.+++.+|.|.+||+.    ...+ ......|..+...|+|+|. ..+|++.+.|..|.+||++....         
T Consensus       177 r~lL~~asd~G~VtlwDv~----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s---------  243 (673)
T KOG4378|consen  177 RFLLSIASDKGAVTLWDVQ----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS---------  243 (673)
T ss_pred             ceeeEeeccCCeEEEEecc----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc---------
Confidence            8899999999999999996    3333 3445679999999999995 56788999999999999986321         


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEecc
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKY  445 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~  445 (498)
                                               ...+...       ......+|+++|.+|++|+..|.|+.||++.. .++..+..
T Consensus       244 -------------------------~~~l~y~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  244 -------------------------TDRLTYS-------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             -------------------------cceeeec-------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence                                     1111111       11123478889999999999999999999864 57888899


Q ss_pred             CCCCeeeeEEcCCC
Q 010883          446 HTSPVRDCSWHPSQ  459 (498)
Q Consensus       446 h~~~v~~l~~sp~~  459 (498)
                      |...|++++|-|.-
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence            99999999998764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=9e-22  Score=181.18  Aligned_cols=125  Identities=17%  Similarity=0.194  Sum_probs=99.7

Q ss_pred             CccccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE--E-EEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          124 PWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK--I-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~--~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      .-.+.+|.+.|+.+.|+|- ..+||+|+.|..|+||.+..|..  + .......+..-.|.++.|+|...-|+..+..|.
T Consensus        72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~  151 (1012)
T KOG1445|consen   72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS  151 (1012)
T ss_pred             cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence            4568899999999999994 46899999999999999986521  1 111223344557899999998877777778899


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  264 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~  264 (498)
                      ++|||+.+++......                +|...|.++.|+.||..|++.+.|..|+|||.+
T Consensus       152 v~i~D~stqk~~~el~----------------~h~d~vQSa~WseDG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELS----------------GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             EEEEEcccCceeeccc----------------CCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence            9999999887643322                677789999999999999999999999999865

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.3e-21  Score=180.26  Aligned_cols=309  Identities=19%  Similarity=0.219  Sum_probs=204.4

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV  203 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iw  203 (498)
                      .....|...|..+.|-|....|++++.|.++++||+.++...... ...+|.+.|.+++|.|.. ..+++|+.||.|.||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            345689999999999996678999999999999999988655543 567899999999999955 578889999999999


Q ss_pred             ECCCCceecccc----ccccccC-------ccccccCCCCceecEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCee
Q 010883          204 DVGSGTMESLAN----VTEIHDG-------LDFSAADDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANKL  268 (498)
Q Consensus       204 d~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~h~~~i~~---~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~  268 (498)
                      |+.-........    +...+.+       ..-.......+...|.+   +.+..|...||+++. |+.|+|||+.....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            986443211111    0111111       11111112234445555   556678888999887 99999999987654


Q ss_pred             eEEE--------ecc---CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE--EEEEEcCCC
Q 010883          269 SLRI--------LAH---TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI--TFIDSRGDG  335 (498)
Q Consensus       269 ~~~~--------~~~---~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~  335 (498)
                      ..+.        ..|   .-.+.++.. +..|.+|++.+.|+.|++|++...  ...++..+.++...-  ..-..+||+
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~--s~sP~~~~sg~~~~sf~vks~lSpd~  329 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSL--SISPVAEFSGKLNSSFYVKSELSPDD  329 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEecccc--CcCchhhccCcccceeeeeeecCCCC
Confidence            3222        123   234666666 366778887788999999999754  334455555443321  122368999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883          336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST  415 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  415 (498)
                      .++++|+.|...++|.+.+..                                 .....+.+|...++.+  .|.+.  +
T Consensus       330 ~~l~SgSsd~~ayiw~vs~~e---------------------------------~~~~~l~Ght~eVt~V--~w~pS--~  372 (720)
T KOG0321|consen  330 CSLLSGSSDEQAYIWVVSSPE---------------------------------APPALLLGHTREVTTV--RWLPS--A  372 (720)
T ss_pred             ceEeccCCCcceeeeeecCcc---------------------------------CChhhhhCcceEEEEE--eeccc--c
Confidence            999999999999999998854                                 3444566676444433  34332  2


Q ss_pred             CCcEEEEEecCCeEEEEECCCCc--------------EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGE--------------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~--------------~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ... +++++.|..++||++..+-              ....+++|...+..+.|+-.+.+....  .+..++|...
T Consensus       373 ~t~-v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP  445 (720)
T KOG0321|consen  373 TTP-VATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP  445 (720)
T ss_pred             CCC-ceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc
Confidence            344 5666999999999986542              123445666666666665444333322  3445555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=2.5e-21  Score=179.25  Aligned_cols=274  Identities=16%  Similarity=0.163  Sum_probs=208.5

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  212 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~  212 (498)
                      .|+.++|-|||..|+.+. +..+.+||.+.|..++   ...+|...|.+++|+.||+.+++|+.|..|.+|+-.-.... 
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-   88 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence            799999999999888774 4579999999995554   55789999999999999999999999999999986532221 


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  292 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  292 (498)
                        +               ..|...|.|+.|+|-...|++++-+ ..-+|........ .. .....+.+.+|. .+|++|
T Consensus        89 --k---------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWt-nDGqyl  147 (1081)
T KOG1538|consen   89 --K---------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWT-NDGQYL  147 (1081)
T ss_pred             --e---------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeec-CCCcEE
Confidence              1               1367799999999999999998765 3678877654332 11 234578889997 899999


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEE---eccccccEEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGV---LMGHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      +.|-.+|+|.+-+-     .+++...   --+..++|.+++|+|..     ..+++.....++.++.+...         
T Consensus       148 alG~~nGTIsiRNk-----~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---------  213 (1081)
T KOG1538|consen  148 ALGMFNGTISIRNK-----NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---------  213 (1081)
T ss_pred             EEeccCceEEeecC-----CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------
Confidence            99999999999865     3333333   33577899999999863     45677777777777776541         


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  444 (498)
                                                .+-.-      .+..--..+..|-++|.+++.|+.|+.+.+|. +.|-.+.++.
T Consensus       214 --------------------------~Igk~------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg  260 (1081)
T KOG1538|consen  214 --------------------------QIGKD------RALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVG  260 (1081)
T ss_pred             --------------------------eeccc------ccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecc
Confidence                                      11100      00000011234667999999999999999997 4677788887


Q ss_pred             cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .....|+.++..|+++.++.|+.||+|..|++...
T Consensus       261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             ccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            77889999999999999999999999999987543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=2.1e-21  Score=162.39  Aligned_cols=285  Identities=18%  Similarity=0.243  Sum_probs=200.1

Q ss_pred             ccccCCCCceEEEEEcCCC-CEEEEEECC-------CeEEEEECCCCeEE------EEEe-ecCCCceeEEEEEeCCCCC
Q 010883          125 WPVDQTTSRAYVSQFSADG-SLFVAGFQA-------SQIRIYDVERGWKI------QKDI-LAKSLRWTVTDTSLSPDQR  189 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg-~~la~~~~d-------g~i~vw~~~~~~~~------~~~~-~~~~~~~~v~~~~~sp~~~  189 (498)
                      ..+..|.++|+.++-+|-. ++|+++..+       -.+-||.+......      .... ....+-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            3466788999999999955 566666542       23679998754211      0000 1113344899999999999


Q ss_pred             eEEEEECCCeEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 010883          190 HLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      .|++.. |+.|.+|++..+... .......           ..++....++-+|+|  ||+.+++. .|+++..||+++.
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~-----------s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~  203 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSE-----------SAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM  203 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccc-----------cccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence            988776 788999999877652 1111111           113455788999999  78877765 5789999999988


Q ss_pred             eeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCC
Q 010883          267 KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD  344 (498)
Q Consensus       267 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d  344 (498)
                      +....+. +|...|..+.|+|....+|++|+.||.|++||.|   ....++..+.+|...|.++.|+|. .++|++++.|
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence            7766665 7888999999998778899999999999999998   356788999999999999999995 4678899999


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS  424 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  424 (498)
                      ..|.+|...............                         .......+..                        
T Consensus       281 s~V~Lsca~svSSE~qi~~~~-------------------------dese~e~~ds------------------------  311 (370)
T KOG1007|consen  281 SAVNLSCASSVSSEQQIEFED-------------------------DESESEDEDS------------------------  311 (370)
T ss_pred             ceeEEEecccccccccccccc-------------------------ccccCcchhh------------------------
Confidence            999999887643222110000                         0000000000                        


Q ss_pred             cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCC
Q 010883          425 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       425 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~  478 (498)
                       .-.++  -+ ....+.++..|...|.+++||.-.+ .+|+-+.||.+.|=.++.
T Consensus       312 -eer~k--pL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  312 -EERVK--PL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             -HHhcc--cc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence             00000  01 1123556778999999999999888 677889999999877653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.7e-21  Score=174.40  Aligned_cols=275  Identities=15%  Similarity=0.240  Sum_probs=195.5

Q ss_pred             CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE--ECCCeEEEEECCCCceeccccccccccCcccccc
Q 010883          151 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA  228 (498)
Q Consensus       151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (498)
                      ....+++||+................ .+.++.|+.... |+++  +.|..+++|.-... ...+.......        
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~--------   78 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TPEVPRVRKLT--------   78 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCC-cceeeeccccce-EEEeecCCceeEEEecccCC-CCccceeeccc--------
Confidence            34469999987653333332222222 489999987664 5544  45778889875432 11111111100        


Q ss_pred             CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc
Q 010883          229 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC  308 (498)
Q Consensus       229 ~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~  308 (498)
                         +.  .-.|++......++++|+..+.|.|||+....+.+.+..|.+.|+++.|+ ..+.+|++++..|.|.|..+. 
T Consensus        79 ---gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~-  151 (673)
T KOG4378|consen   79 ---GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTK-  151 (673)
T ss_pred             ---cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecc-
Confidence               01  33455555556899999999999999999777777888999999999998 788999999999999999986 


Q ss_pred             ccCCCceeEEeccccc-cEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          309 LNVKGKPAGVLMGHLE-GITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       309 ~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                         .+.....+....+ .|.-+.|+|..++ |.+++.+|.|.+||+.......                           
T Consensus       152 ---t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~---------------------------  201 (673)
T KOG4378|consen  152 ---TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF---------------------------  201 (673)
T ss_pred             ---cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc---------------------------
Confidence               5444555554433 4568899997765 5578899999999998743211                           


Q ss_pred             CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEe
Q 010883          387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS  466 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~  466 (498)
                            .....|..  ....++|+|.   +..+|++.+.|..|++||+.+.+...++. ...+...++|+++|.+|+.|.
T Consensus       202 ------~~~~~HsA--P~~gicfsps---ne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~  269 (673)
T KOG4378|consen  202 ------HASEAHSA--PCRGICFSPS---NEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN  269 (673)
T ss_pred             ------chhhhccC--CcCcceecCC---ccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec
Confidence                  11223331  2223344544   66788899999999999999887777775 456899999999999999999


Q ss_pred             CCCcEEEecCCCCCCCCCc
Q 010883          467 WDGDVVRWEFPGNGEAAPP  485 (498)
Q Consensus       467 ~Dg~i~iw~~~~~~~~~~~  485 (498)
                      ..|.|..||+...+.+...
T Consensus       270 s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  270 SKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             CCceEEEEecccCCCCceE
Confidence            9999999999987765443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.7e-22  Score=196.05  Aligned_cols=254  Identities=18%  Similarity=0.272  Sum_probs=196.9

Q ss_pred             CCCCceEEEEEcCCCCE----EEEEECCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeE
Q 010883          129 QTTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIV  200 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~----la~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i  200 (498)
                      ....+-+.++|.+.|..    ||.|..||.|.+||...   +.....+.....|.+.|..+.|++.+. +||+|+.||.|
T Consensus        62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI  141 (1049)
T KOG0307|consen   62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI  141 (1049)
T ss_pred             cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence            34667899999998876    88899999999999875   444444556678999999999999665 99999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCC--
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--  277 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--  277 (498)
                      .|||+..-+........              .-...|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+.+  
T Consensus       142 ~iWDlnn~~tP~~~~~~--------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  142 LIWDLNKPETPFTPGSQ--------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             EEeccCCcCCCCCCCCC--------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence            99999874432222100              12237999999974 45788889999999999999988887766554  


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCC---eEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 010883          278 DVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~  353 (498)
                      .+..++|+|.+...|++++.|.   .|.+||+|   ....++..+.+|..+|.++.|.+.+ .+|++++.|+.|.+|+..
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR---~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR---FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeeccc---ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence            5788999988788888887764   69999998   3456778889999999999999865 889999999999999998


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd  433 (498)
                      +.                                  +.+..+....  ..+..+.|++.   +...+++++.||.|-||.
T Consensus       285 tg----------------------------------Evl~~~p~~~--nW~fdv~w~pr---~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  285 TG----------------------------------EVLGELPAQG--NWCFDVQWCPR---NPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             Cc----------------------------------eEeeecCCCC--cceeeeeecCC---Ccchhhhheeccceeeee
Confidence            83                                  3333333322  23344555554   556899999999999999


Q ss_pred             CCCCc
Q 010883          434 LVSGE  438 (498)
Q Consensus       434 ~~~~~  438 (498)
                      +....
T Consensus       326 l~~~~  330 (1049)
T KOG0307|consen  326 LQGTD  330 (1049)
T ss_pred             eecCC
Confidence            87654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.5e-21  Score=163.27  Aligned_cols=210  Identities=22%  Similarity=0.277  Sum_probs=157.3

Q ss_pred             CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--E--EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883          229 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--L--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW  304 (498)
Q Consensus       229 ~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vw  304 (498)
                      ...+|...|++++|+.||+.|++++.|+.|++|++..-...  +  +..-.-+..+.+.|.|....++++.-...++++|
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            34589999999999999999999999999999998763211  1  1111223568899986666677777777899999


Q ss_pred             cCccccCCCce---------eEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceee
Q 010883          305 DRRCLNVKGKP---------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM  375 (498)
Q Consensus       305 d~~~~~~~~~~---------~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  375 (498)
                      .+.... .+..         ..--..|.-.+..+-...++.+|++++.|..|.+|+++.                     
T Consensus       161 k~~K~~-dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG---------------------  218 (420)
T KOG2096|consen  161 KLVKKT-DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG---------------------  218 (420)
T ss_pred             Eeeecc-cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC---------------------
Confidence            875221 1111         011123556677777888899999999999999999984                     


Q ss_pred             cCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC---C-----cEEEEeccCC
Q 010883          376 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS---G-----EQVAALKYHT  447 (498)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~---~-----~~~~~~~~h~  447 (498)
                                    +.+..+......      .+..+.||+|++|++++..-.|++|.+--   |     ..+..+++|.
T Consensus       219 --------------q~L~~idtnq~~------n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  219 --------------QLLQSIDTNQSS------NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             --------------ceeeeecccccc------ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence                          444444433211      12336789999999999999999998632   2     3466788999


Q ss_pred             CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ..|..++|+++...++|.+.||+++|||.+-..
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence            999999999999999999999999999987543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=9.8e-21  Score=171.67  Aligned_cols=224  Identities=14%  Similarity=0.258  Sum_probs=162.9

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV  200 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i  200 (498)
                      ....|.+|++-|+|++|+.||.+||+|+.|-.+.|||.-..+.++.  ...+|...|.++.|.|  +.+++++|..|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            3567899999999999999999999999999999999986555443  4468888999999999  45788999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee----------
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLS----------  269 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~----------  269 (498)
                      +++|+...+....      ..+.......-..|...|..++-.|++ ..+.+++.||+|+-+|++....-          
T Consensus       120 ~lfdl~~~~~~~~------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  120 KLFDLDSSKEGGM------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             EEEeccccccccc------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence            9999985332111      111111122223577789999999988 78999999999999999763210          


Q ss_pred             EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc----CCC----------ceeEEec-ccc-----------
Q 010883          270 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----VKG----------KPAGVLM-GHL-----------  323 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~----~~~----------~~~~~~~-~~~-----------  323 (498)
                      ..+...--...|+..+|.+..+|++|+.|-..++||.+...    ..+          .++..+. +|.           
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence            11112223567899999999999999999999999954110    000          0111111 121           


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      ..++.+.|+|+|.-|++.-....|+++|+..
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence            1256788999998888776667899999876

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.2e-20  Score=183.43  Aligned_cols=310  Identities=20%  Similarity=0.226  Sum_probs=216.5

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEEECC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iwd~~  206 (498)
                      +...+-..+.|+|-...++++...-.|+|||.+.+..+............|+.+.+-.  |..++++++.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            3444667889999999999998777899999999877766655555566899999865  55789999999999999843


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEe
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG  285 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~  285 (498)
                      .... ...++.....++.-...   +-.+.=.-+.|.....+|++++.-..|+|||......+..+. +....|+++.-.
T Consensus      1142 ~~~~-~~~eLVTaw~~Ls~~~~---~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1142 ADKW-KKPELVTAWSSLSDQLP---GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred             cccc-CCceeEEeeccccccCc---cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc
Confidence            2210 00111111111100000   000111446788766677777778899999999888777665 445677888776


Q ss_pred             CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc--EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      ...++.+++|..||.|++||.|... ....+...+.|...  |..+.+.+.|- .|++|+.||.|++||++......   
T Consensus      1218 ~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--- 1293 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--- 1293 (1387)
T ss_pred             ccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---
Confidence            5678999999999999999998654 33567788888887  99999988765 49999999999999999842111   


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA  442 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  442 (498)
                                                   ..+...|.....   ...++...++...+|+|+. +.|.||++ .|+.+..
T Consensus      1294 -----------------------------~~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~ 1339 (1387)
T KOG1517|consen 1294 -----------------------------FLTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNI 1339 (1387)
T ss_pred             -----------------------------cceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEec-Chhhhcc
Confidence                                         011111110000   0112233446788999998 99999998 4555555


Q ss_pred             eccC-------CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          443 LKYH-------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       443 ~~~h-------~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ++.+       .+.+.+++|+|...+||.|+.|.+|.||......
T Consensus      1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            4422       3578999999999999999999999999876543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1e-20  Score=160.25  Aligned_cols=243  Identities=17%  Similarity=0.192  Sum_probs=175.7

Q ss_pred             EEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeE
Q 010883          179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI  258 (498)
Q Consensus       179 v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i  258 (498)
                      ..|+.|++.|.+||+|+.||.|.|||+.+......+.                +|..+|.+++||+||+.|++++.|..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls----------------aH~~pi~sl~WS~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS----------------AHVRPITSLCWSRDGRKLLTSSRDWSI   89 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh----------------ccccceeEEEecCCCCEeeeecCCcee
Confidence            7889999999999999999999999998866433322                688899999999999999999999999


Q ss_pred             EEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------cccEEEEEEc
Q 010883          259 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSR  332 (498)
Q Consensus       259 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~  332 (498)
                      .+||+..+.++.++ ...++|..+.|+|.+.+.+++.-.+..-.+-++.    .  +.......      ...-.+..|.
T Consensus        90 ~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s----~--~~h~~Lp~d~d~dln~sas~~~fd  162 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS----D--PKHSVLPKDDDGDLNSSASHGVFD  162 (405)
T ss_pred             EEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEec----C--CceeeccCCCcccccccccccccc
Confidence            99999999988887 5778999999998877777766655555555553    1  11111111      1112233588


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                      +.|++|++|...|.+.++|..+...                                  +..++-.. ...+...    .
T Consensus       163 r~g~yIitGtsKGkllv~~a~t~e~----------------------------------vas~rits-~~~IK~I----~  203 (405)
T KOG1273|consen  163 RRGKYIITGTSKGKLLVYDAETLEC----------------------------------VASFRITS-VQAIKQI----I  203 (405)
T ss_pred             CCCCEEEEecCcceEEEEecchhee----------------------------------eeeeeech-heeeeEE----E
Confidence            8999999999999999999988432                                  23222221 1112222    3


Q ss_pred             cCCCCcEEEEEecCCeEEEEECCCC-------c--EEEEec--cCCCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 010883          413 YSTGQKYIYTGSHDSCVYVYDLVSG-------E--QVAALK--YHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG  480 (498)
Q Consensus       413 ~s~~~~~l~~g~~dg~i~iwd~~~~-------~--~~~~~~--~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~~~  480 (498)
                      ++..|++|+.-+.|..|+.|++..-       +  +.+.++  -....-.+++|+.+|.+++.++ .-..++||+-..+.
T Consensus       204 ~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs  283 (405)
T KOG1273|consen  204 VSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS  283 (405)
T ss_pred             EeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc
Confidence            4447999999999999999997621       1  112221  1123456789999999888776 34579999987775


Q ss_pred             CCC
Q 010883          481 EAA  483 (498)
Q Consensus       481 ~~~  483 (498)
                      ...
T Consensus       284 LVK  286 (405)
T KOG1273|consen  284 LVK  286 (405)
T ss_pred             eee
Confidence            543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2e-21  Score=173.71  Aligned_cols=321  Identities=18%  Similarity=0.254  Sum_probs=240.1

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV  200 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i  200 (498)
                      ....|..|.+-|..+.|+..|..|++|+.|..|.+||...+.....  ...+|...|....|-|  +.+-|++++.||.|
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCce
Confidence            3467899999999999999999999999999999999998754443  4567888898889998  45789999999999


Q ss_pred             EEEECCCCceec-cccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEe---cc
Q 010883          201 HIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---AH  275 (498)
Q Consensus       201 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~---~~  275 (498)
                      ++=.+....... ...              ...|.++|.-++.-|+. ..|.+++.|+.+.-+|+.++.+...+.   .+
T Consensus       212 r~s~i~~t~~~e~t~r--------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~  277 (559)
T KOG1334|consen  212 RVSEILETGYVENTKR--------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD  277 (559)
T ss_pred             eeeeeccccceeccee--------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence            987764332222 221              22477789999999965 468899999999999998876543332   33


Q ss_pred             CC---CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC--CceeEEecc------ccccEEEEEEcCCCCEEEEEeCC
Q 010883          276 TS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GKPAGVLMG------HLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       276 ~~---~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                      ..   ....++..|.+.+.+++|+.|..+++||.+.....  ...+..+..      ..-.|++++|+.++.-|++...|
T Consensus       278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnD  357 (559)
T KOG1334|consen  278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYND  357 (559)
T ss_pred             CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecc
Confidence            33   56788888888889999999999999998744321  112222222      23469999999888888888888


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE-EEccCceeEEEEEEEeccccCCCCcEEEEE
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA-TYKGHSVLRTLIRCHFSPVYSTGQKYIYTG  423 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  423 (498)
                      -.|+++.-...........                      .+..+.+. .|++|....++..+-   .|.|...|+++|
T Consensus       358 e~IYLF~~~~~~G~~p~~~----------------------s~~~~~~k~vYKGHrN~~TVKgVN---FfGPrsEyVvSG  412 (559)
T KOG1334|consen  358 EDIYLFNKSMGDGSEPDPS----------------------SPREQYVKRVYKGHRNSRTVKGVN---FFGPRSEYVVSG  412 (559)
T ss_pred             cceEEeccccccCCCCCCC----------------------cchhhccchhhcccccccccceee---eccCccceEEec
Confidence            8899994332211000000                      00012333 388998777765544   356688999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      +.=|.|.||+-.+++.+..+.+-..-|+||.=+|--+.||++|-|..|+||...+.+....
T Consensus       413 SDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~  473 (559)
T KOG1334|consen  413 SDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATE  473 (559)
T ss_pred             CccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccC
Confidence            9999999999999999988887777999999999999999999999999998866555443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=9.9e-20  Score=152.62  Aligned_cols=288  Identities=18%  Similarity=0.259  Sum_probs=202.0

Q ss_pred             CceEEEEEcC--C-CCEEEEEEC----CCeEEEEECC--CCeEEEEEeecCCCceeEEEEEeCCCCC-----eEEEEECC
Q 010883          132 SRAYVSQFSA--D-GSLFVAGFQ----ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQR-----HLVYASMS  197 (498)
Q Consensus       132 ~~v~~~~~s~--d-g~~la~~~~----dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~-----~l~~~s~d  197 (498)
                      -+++++.||.  + +-+||.|+.    .+.|.|-.+.  +++.+..  ....|..+++.+.|.|+..     +||+.+  
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--  120 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATSS--  120 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccccCcchhhccc--
Confidence            3577888883  3 347888874    4567776554  3333322  2257888999999999873     555543  


Q ss_pred             CeEEEEECCCC--ceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe---eeEE
Q 010883          198 PIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSLR  271 (498)
Q Consensus       198 ~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~---~~~~  271 (498)
                      ..+++|.+...  +......         +.......+..++++..|+. +-++|.+.+-|.+..|||++++.   ....
T Consensus       121 D~LRlWri~~ee~~~~~~~~---------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  121 DFLRLWRIGDEESRVELQSV---------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             CeEEEEeccCcCCceehhhh---------hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            47999998743  2211111         11122234566999999997 67789999999999999999873   3567


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCC-CcEEE
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD-QAIKL  349 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d-g~i~i  349 (498)
                      +.+|...|..++|.....+.|++.+.||.||+||+|... ....+..-.....+...++|++ |.+++|+-..| ..|.|
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI  270 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence            779999999999986667899999999999999999554 2223333333356788899987 45677776665 46999


Q ss_pred             EeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeE
Q 010883          350 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV  429 (498)
Q Consensus       350 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  429 (498)
                      .|+|...                                 ..+..+++|..  .+....|.|.   ....|++++.|..+
T Consensus       271 LDiR~P~---------------------------------tpva~L~~H~a--~VNgIaWaPh---S~~hictaGDD~qa  312 (364)
T KOG0290|consen  271 LDIRVPC---------------------------------TPVARLRNHQA--SVNGIAWAPH---SSSHICTAGDDCQA  312 (364)
T ss_pred             EEecCCC---------------------------------cceehhhcCcc--cccceEecCC---CCceeeecCCcceE
Confidence            9999743                                 56777888874  3444556665   56789999999999


Q ss_pred             EEEECCCCc------EEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEE
Q 010883          430 YVYDLVSGE------QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVR  473 (498)
Q Consensus       430 ~iwd~~~~~------~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~i  473 (498)
                      .|||+.+.-      ++..+. -.+.|+.+.|++..+ +++.+. ++.+.+
T Consensus       313 liWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  313 LIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             EEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            999997632      233333 457899999997655 666664 445544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=3e-20  Score=165.05  Aligned_cols=255  Identities=19%  Similarity=0.246  Sum_probs=182.1

Q ss_pred             CCCceeEEEEEeCCCC--CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEE
Q 010883          173 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGREL  249 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~--~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l  249 (498)
                      .-+.+.|++++|+|..  +++|+|...|.|-+||+.+.+..... +.           -...|..+|.++.|+| +-..+
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~-v~-----------~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG-VY-----------LFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc-eE-----------EeccCCccccceEecCCChhhe
Confidence            3455689999999954  58888889999999999633221110 00           0125778999999999 44679


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883          250 VAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT  327 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  327 (498)
                      ++.+.||+|++-|++.+.....+.  .....+..+.|+ .+...++.+..=|...+||++..   +.....+.-|...|+
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~~---~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRTD---GSEYENLRLHKKKIT  326 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeecC---Cccchhhhhhhcccc
Confidence            999999999999998875433332  244566778886 55666777777779999999933   333555667888999


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          328 FIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       328 ~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      .++++|-. .+|++++.|++++|||++.......                              ++...-.|.  ..+..
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------------------------p~lst~~Hr--rsV~s  374 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------------------------PFLSTLPHR--RSVNS  374 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCC------------------------------cceeccccc--ceeee
Confidence            99999954 5789999999999999998654332                              111112232  23333


Q ss_pred             EEeccccCCCCcEEEEEecCCeEEEEECC----CCcEEEEeccCCC------CeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLV----SGEQVAALKYHTS------PVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~------~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      .    .|||.+..|++.+.|..|+|||..    .-.+..++. |..      ......|.|+..++++|-.-..|-|+|-
T Consensus       375 A----yFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  375 A----YFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             e----EEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence            3    455566669999999999999983    333444443 321      2345689999999999999889999998


Q ss_pred             CCCC
Q 010883          477 PGNG  480 (498)
Q Consensus       477 ~~~~  480 (498)
                      ..+.
T Consensus       450 ~~~q  453 (498)
T KOG4328|consen  450 NGGQ  453 (498)
T ss_pred             CCCE
Confidence            7765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=2e-20  Score=159.37  Aligned_cols=252  Identities=19%  Similarity=0.233  Sum_probs=188.2

Q ss_pred             CCCCceEEEEEcCCC----CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEE
Q 010883          129 QTTSRAYVSQFSADG----SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV  203 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg----~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iw  203 (498)
                      .|...-+.++|+-|-    .+||+|+.-|.|+|.|+.++....   ...+|.+.|+.+.|.|+. ++++++|.|..|++|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw  163 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW  163 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence            578889999998764    479999999999999999874444   335788899999999965 788999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--------------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--------------  269 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~--------------  269 (498)
                      ++++..++.++...             .||.+.|.++.|+++|.+|++++.|.+|.+|++...+..              
T Consensus       164 nI~~~~Cv~VfGG~-------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t  230 (385)
T KOG1034|consen  164 NIQTDVCVAVFGGV-------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT  230 (385)
T ss_pred             eccCCeEEEEeccc-------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence            99999988776543             378889999999999999999999999999999843210              


Q ss_pred             --------E------EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc----------CCCceeEEecccccc
Q 010883          270 --------L------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----------VKGKPAGVLMGHLEG  325 (498)
Q Consensus       270 --------~------~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~  325 (498)
                              .      +-.-|...|-|+.|.   ++++++-+-++.|..|..-...          .....+..+.-....
T Consensus       231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~  307 (385)
T KOG1034|consen  231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD  307 (385)
T ss_pred             cCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence                    0      112477788888886   6899999999999999872111          111223334434445


Q ss_pred             EEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          326 ITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       326 v~~l~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      |..+.  |.|-++.||.|...|.|.+||++.......                                .++..+....+
T Consensus       308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~--------------------------------ttl~~s~~~~t  355 (385)
T KOG1034|consen  308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC--------------------------------TTLTHSKSGST  355 (385)
T ss_pred             eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC--------------------------------ceEEeccccce
Confidence            66655  456688999999999999999998543211                                11111111111


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                          ....+||.||.+|+..+.|+.|.-||..
T Consensus       356 ----VRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  356 ----VRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ----eeeeeecccCcEEEEEeCCCcEEEEEee
Confidence                2233677899999999999999999954

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=4.8e-18  Score=165.94  Aligned_cols=292  Identities=32%  Similarity=0.505  Sum_probs=222.6

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEe-CCCCC-eEEEEEC-CCeEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSL-SPDQR-HLVYASM-SPIVH  201 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~-sp~~~-~l~~~s~-d~~i~  201 (498)
                      .+..|...+.++.|.+.+..++.++.|+.+.+|+...+. ..........  ..+..+.+ ++++. .++..+. |+.+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence            567899999999999999999999999999999998875 3333222111  35666777 88887 5555444 89999


Q ss_pred             EEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEeccCCCe
Q 010883          202 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       202 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      +|+... ........                .|...|..++|+|++..+++++. ++.+++|++..+..+..+..|...|
T Consensus       138 ~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  201 (466)
T COG2319         138 LWDLSTPGKLIRTLE----------------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV  201 (466)
T ss_pred             EEEecCCCeEEEEEe----------------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence            999987 33222221                35668999999999998888886 9999999999988888888899999


Q ss_pred             eEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeE-EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883          280 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       280 ~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                      .+++|+ +++. ++++++.|+.|++||..    .+.... .+.+|.... ...|+|++..+++++.|+.+++|+++....
T Consensus       202 ~~~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         202 SSLAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             EEEEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            999998 6666 55555999999999876    556666 688888775 448999998999999999999999987431


Q ss_pred             ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883          358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG  437 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  437 (498)
                                                       .+..+..|.  ..+...    .+.|++..+++++.|+.+.+||..+.
T Consensus       276 ---------------------------------~~~~~~~~~--~~v~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         276 ---------------------------------LLRTLSGHS--SSVLSV----AFSPDGKLLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             ---------------------------------EEEEEecCC--ccEEEE----EECCCCCEEEEeeCCCcEEEEEcCCC
Confidence                                             122223332  122222    45557788888998999999999888


Q ss_pred             cEEEEec--cCCCCeeeeEEcCCCCeEEEE-eCCCcEEEecCCCCC
Q 010883          438 EQVAALK--YHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGNG  480 (498)
Q Consensus       438 ~~~~~~~--~h~~~v~~l~~sp~~~~l~s~-~~Dg~i~iw~~~~~~  480 (498)
                      .......  .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            8776665  788889999994332455555 688999999998775

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1.7e-19  Score=151.29  Aligned_cols=252  Identities=20%  Similarity=0.327  Sum_probs=184.1

Q ss_pred             ceeEEEEEeCC--C-CCeEEEEEC----CCeEEEEECC--CCceeccccccccccCccccccCCCCceecEEEEEEcCCC
Q 010883          176 RWTVTDTSLSP--D-QRHLVYASM----SPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG  246 (498)
Q Consensus       176 ~~~v~~~~~sp--~-~~~l~~~s~----d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g  246 (498)
                      .+++.++.|+.  + .-+|+.|+.    .+.|.|..+.  +++......               ..|..+++.+.|.|+.
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~---------------fd~~YP~tK~~wiPd~  108 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN---------------FDHPYPVTKLMWIPDS  108 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC---------------CCCCCCccceEecCCc
Confidence            34678888884  3 347777774    4566666554  233222221               2477799999999976


Q ss_pred             C-----EEEEEeCCCeEEEEECCCCeeeE----E-----EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883          247 R-----ELVAGSSDDCIYVYDLEANKLSL----R-----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK  312 (498)
Q Consensus       247 ~-----~l~~g~~dg~i~vwd~~~~~~~~----~-----~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  312 (498)
                      .     +||+.  +..+++|.+...+...    .     -..+..++++..|+.-+.+++.+++-|-++.|||+.... .
T Consensus       109 ~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-~  185 (364)
T KOG0290|consen  109 KGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-S  185 (364)
T ss_pred             cccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-c
Confidence            3     44443  3469999987422111    1     124668999999998899999999999999999998331 3


Q ss_pred             CceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCce
Q 010883          313 GKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS  391 (498)
Q Consensus       313 ~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (498)
                      +.....+.+|...|..++|...+ +.|++.+.||.+++||+|....                                 .
T Consensus       186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---------------------------------S  232 (364)
T KOG0290|consen  186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---------------------------------S  232 (364)
T ss_pred             cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---------------------------------c
Confidence            34567788999999999999855 5789999999999999998542                                 2


Q ss_pred             EEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-CeEEEEECCC-CcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCC
Q 010883          392 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWD  468 (498)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~D  468 (498)
                      ...|+.......+.+..++..   |-+++|+-..| ..|.|.|++. ..++.++++|.+.|+.++|.|... .|.|+|+|
T Consensus       233 TIIYE~p~~~~pLlRLswnkq---DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  233 TIIYEDPSPSTPLLRLSWNKQ---DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             eEEecCCCCCCcceeeccCcC---CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence            223333333345555555554   67788876655 5799999986 567899999999999999999776 99999999


Q ss_pred             CcEEEecCCCCCC
Q 010883          469 GDVVRWEFPGNGE  481 (498)
Q Consensus       469 g~i~iw~~~~~~~  481 (498)
                      ..+.|||+.....
T Consensus       310 ~qaliWDl~q~~~  322 (364)
T KOG0290|consen  310 CQALIWDLQQMPR  322 (364)
T ss_pred             ceEEEEecccccc
Confidence            9999999986544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.7e-18  Score=141.67  Aligned_cols=281  Identities=16%  Similarity=0.226  Sum_probs=190.4

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCC-------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..|++-+++|.+++|++|..+|.|-+..+.+-       ...........|.++|..++|.  ..+|++++ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            34667789999999999999999999987641       1112233447899999999997  45666665 59999998


Q ss_pred             CCCCce----eccccccccc-cCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          205 VGSGTM----ESLANVTEIH-DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       205 ~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      ......    ........+. .+.        -.--.|+++...|..+-++.++.|+.++-||+++|+..+.+++|++.|
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~--------~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYv  159 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDA--------VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYV  159 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCc--------ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCccee
Confidence            754322    1121111111 000        011168999999877767777799999999999999999999999999


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc---------cc-ccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------HL-EGITFIDSRGDGRYLISNGKDQAIKL  349 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~-~~v~~l~~~~~~~~l~s~~~dg~i~i  349 (498)
                      .++.-- .....+++|+.||++++||.+    +.+.+..+..         |- ..|-+++.+  ..++++|+ ...+.+
T Consensus       160 H~vv~R-~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lsl  231 (325)
T KOG0649|consen  160 HSVVGR-NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSL  231 (325)
T ss_pred             eeeeec-ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeE
Confidence            999884 445567899999999999998    6666655542         21 235566554  45677654 457999


Q ss_pred             EeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeE
Q 010883          350 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV  429 (498)
Q Consensus       350 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  429 (498)
                      |.++.....                                .+..+.++.....         |  +...+++++..+.|
T Consensus       232 whLrsse~t--------------------------------~vfpipa~v~~v~---------F--~~d~vl~~G~g~~v  268 (325)
T KOG0649|consen  232 WHLRSSEST--------------------------------CVFPIPARVHLVD---------F--VDDCVLIGGEGNHV  268 (325)
T ss_pred             EeccCCCce--------------------------------EEEecccceeEee---------e--ecceEEEeccccce
Confidence            999985432                                2222233322111         1  35678888888889


Q ss_pred             EEEECCCCcEEEEeccCCCCeeeeEEcCCC-CeEEEEeCCCcEEEec
Q 010883          430 YVYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWE  475 (498)
Q Consensus       430 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~~~Dg~i~iw~  475 (498)
                      .-|.+ +|.............++..|+..- ++|-.++..+.+.|+.
T Consensus       269 ~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  269 QSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             eeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            99987 566555555555556666665433 3555666677777653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=1.9e-18  Score=162.07  Aligned_cols=283  Identities=12%  Similarity=0.156  Sum_probs=173.7

Q ss_pred             EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCC-CceeccccccccccCc
Q 010883          146 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS-GTMESLANVTEIHDGL  223 (498)
Q Consensus       146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~  223 (498)
                      +++...++.|.+|++.+...+....... .......++++|++++|++++ .++.|.+|++.. +.........      
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------   77 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------   77 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence            3344678999999996432222211111 223577889999999987765 478899999863 3322111111      


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe----eeEEEeccCCCeeEEEEeCCCCCEEE-EeeC
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIY-SGSD  297 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~  297 (498)
                               .......++|+|++++|++++. ++.|.+|++.+..    .+..+ .+.....+++++ +++++++ +...
T Consensus        78 ---------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~-p~g~~l~v~~~~  146 (330)
T PRK11028         78 ---------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANID-PDNRTLWVPCLK  146 (330)
T ss_pred             ---------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeC-CCCCEEEEeeCC
Confidence                     0113567999999998888764 7899999997432    22222 233456778897 6666664 5556


Q ss_pred             CCeEEEEcCccccCCC-c--eeEEeccccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCCCccccccCcccccccce
Q 010883          298 DNLCKVWDRRCLNVKG-K--PAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYR  373 (498)
Q Consensus       298 dg~i~vwd~~~~~~~~-~--~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  373 (498)
                      ++.|.+||+.....-. .  ...... .......+.|+|++++++++.. ++.|.+|++.......              
T Consensus       147 ~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~--------------  211 (330)
T PRK11028        147 EDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI--------------  211 (330)
T ss_pred             CCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE--------------
Confidence            7999999996311000 0  001111 1234678999999999988776 8999999997421100              


Q ss_pred             eecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCc----EEEEeccCCC
Q 010883          374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGE----QVAALKYHTS  448 (498)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~----~~~~~~~h~~  448 (498)
                                      ..+..+.................++|++++++++.. ++.|.+|++....    .+..... ..
T Consensus       212 ----------------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~  274 (330)
T PRK11028        212 ----------------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ET  274 (330)
T ss_pred             ----------------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cc
Confidence                            011111110000000001112356789999999865 7899999986543    2222222 13


Q ss_pred             CeeeeEEcCCCCeEEEEeC-CCcEEEecCCC
Q 010883          449 PVRDCSWHPSQPMLVSSSW-DGDVVRWEFPG  478 (498)
Q Consensus       449 ~v~~l~~sp~~~~l~s~~~-Dg~i~iw~~~~  478 (498)
                      ....+.|+|+|++|+++.. +++|.+|+++.
T Consensus       275 ~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        275 QPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             cCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            4568999999998887775 89999998864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.85  E-value=7.5e-21  Score=180.39  Aligned_cols=293  Identities=15%  Similarity=0.254  Sum_probs=218.6

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..|.+|.++|+|+.|...|.++++|+.|..|+||..+++.++.   ...+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            3567999999999999999999999999999999999875544   5679999999999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE----e-ccCCCe
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----L-AHTSDV  279 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~----~-~~~~~v  279 (498)
                      +..+..+.+..                ||++.|++++|+|-.    +.+.||++++||..- ......    . .....+
T Consensus       261 l~~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~  319 (1113)
T KOG0644|consen  261 LPDGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLV  319 (1113)
T ss_pred             cCCCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccce
Confidence            99988766654                799999999999954    677899999999871 111111    0 123455


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCc
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      .++.|. ..+.-+++|+.|+.-..|......          .+...+..+..+.+. .+.+++-.+-.+++|++-++   
T Consensus       320 ~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---  385 (1113)
T KOG0644|consen  320 DSILFE-NNGDRFLTGSRDGEARNHEFEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---  385 (1113)
T ss_pred             eeeecc-ccccccccccCCcccccchhhHhh----------hhccceEEEeccccccccceeeeeeeEeeeeecccc---
Confidence            666775 677889999999999988875221          122222222222222 35566667778999998873   


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                                                     +.++...+|.....+..  ++|.   +.+...+++.||...|||+..|.
T Consensus       386 -------------------------------~l~H~l~ghsd~~yvLd--~Hpf---n~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  386 -------------------------------QLLHNLMGHSDEVYVLD--VHPF---NPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             -------------------------------hhhhhhcccccceeeee--ecCC---CcHhhhhccCCCceEeeecccCC
Confidence                                           44555556664444443  2332   56778899999999999999998


Q ss_pred             EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccchhceeeceec
Q 010883          439 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFY  497 (498)
Q Consensus       439 ~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~f~  497 (498)
                      +++.+.-..+.+.+.+||+||..++....-|.++|.....++      ..++.+..+||
T Consensus       430 pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~------s~k~ak~dqff  482 (1113)
T KOG0644|consen  430 PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK------SQKKAKYDQFF  482 (1113)
T ss_pred             cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc------cccccccceEe
Confidence            877665335677888999999999999888999998765443      23345555555

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=1.3e-19  Score=166.08  Aligned_cols=243  Identities=17%  Similarity=0.226  Sum_probs=185.5

Q ss_pred             eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC--
Q 010883          170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--  247 (498)
Q Consensus       170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~--  247 (498)
                      ....+|.+.|.+|...|.|.+|++|+.||+|+||.+.++.++....+..                 .|.|++|+|.+.  
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-----------------~I~~vaw~P~~~~~  456 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-----------------EIRSVAWNPLSDLC  456 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-----------------eeEEEEecCCCCce
Confidence            4557899999999999999999999999999999999999988776543                 799999999665  


Q ss_pred             EEEEEeCCCeEEEEECCCC-------------------------------------eeeEEEeccCCCeeEEEEeCCCCC
Q 010883          248 ELVAGSSDDCIYVYDLEAN-------------------------------------KLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       248 ~l~~g~~dg~i~vwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                      .||++-.. .+.|.+..-|                                     .-+.....|...|+.+.|+ ..|.
T Consensus       457 vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGD  534 (733)
T KOG0650|consen  457 VLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGD  534 (733)
T ss_pred             eEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCc
Confidence            34444332 2444332111                                     0122334688899999998 8899


Q ss_pred             EEEEeeCC---CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883          291 LIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       291 ~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      +|++...+   ..|.|+++.    .......|....+.|.++.|+|...+|++++. ..|+|||+.....          
T Consensus       535 YlatV~~~~~~~~VliHQLS----K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel----------  599 (733)
T KOG0650|consen  535 YLATVMPDSGNKSVLIHQLS----KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL----------  599 (733)
T ss_pred             eEEEeccCCCcceEEEEecc----cccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH----------
Confidence            99988765   468899986    44445556556788999999999988888765 5799999976221          


Q ss_pred             ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEeccC
Q 010883          368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYH  446 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h  446 (498)
                                              +..+...      ....-+++++|.|.-|+.|+.|+.+..||+.-+ ++.+++..|
T Consensus       600 ------------------------vKkL~tg------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H  649 (733)
T KOG0650|consen  600 ------------------------VKKLLTG------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH  649 (733)
T ss_pred             ------------------------HHHHhcC------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh
Confidence                                    1111111      122233466778999999999999999999765 567888899


Q ss_pred             CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      ...+++++|++..+++++|+.||++.|+.-
T Consensus       650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             hhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            999999999999999999999999998853

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-18  Score=165.59  Aligned_cols=295  Identities=15%  Similarity=0.144  Sum_probs=205.1

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC--CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      ..|.-.++|.++||+++++|+|..||.|.+|.--.  +... .....+=|...|++++|+++|.+|++|+..+.+.+|.+
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~-t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE-TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc-cceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence            46777799999999999999999999999997443  2222 22233445568999999999999999999999999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-----------
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-----------  274 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----------  274 (498)
                      ++++...+.++..                 +|..+.++||+.+.+....|+.|.+....+......+.+           
T Consensus       281 ~T~~kqfLPRLgs-----------------~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~  343 (792)
T KOG1963|consen  281 ETGKKQFLPRLGS-----------------PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR  343 (792)
T ss_pred             cCCCcccccccCC-----------------eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence            9998655555433                 899999999999999999999999998766554443332           


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-----------cccccEEEEEEcCCCCEEEEEeC
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----------GHLEGITFIDSRGDGRYLISNGK  343 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------~~~~~v~~l~~~~~~~~l~s~~~  343 (498)
                      ..+-.+.+++. |..+.++-.+..|.|.+||+.    +...+..+.           .+.-.++.++.+-.|.+++|.-.
T Consensus       344 ~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~----td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~  418 (792)
T KOG1963|consen  344 PQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLY----TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA  418 (792)
T ss_pred             ccccceeEEEc-CCCCceeecCCCceEEEEecc----ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence            23345677886 556677778889999999997    333333321           12335677777778888887642


Q ss_pred             --------CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          344 --------DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       344 --------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                              ||  .+++|-.........+                             .......|....  ...++....
T Consensus       419 ~~d~~~~~~~e~~LKFW~~n~~~kt~~L-----------------------------~T~I~~PH~~~~--vat~~~~~~  467 (792)
T KOG1963|consen  419 RIDKFNFFDGEVSLKFWQYNPNSKTFIL-----------------------------NTKINNPHGNAF--VATIFLNPT  467 (792)
T ss_pred             eehhhhccCceEEEEEEEEcCCcceeEE-----------------------------EEEEecCCCcee--EEEEEecCc
Confidence                    32  4677776543221110                             111222333222  222222222


Q ss_pred             CCCCcEEEEEecCCeEEEEECCCCc----------EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          414 STGQKYIYTGSHDSCVYVYDLVSGE----------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       414 s~~~~~l~~g~~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      +  ....++++.||.++||-+...+          +...-..|..++++++|+.||. +++++.|++|.+||..+.
T Consensus       468 r--s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  468 R--SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             c--cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence            2  2278999999999999883321          2222224789999999999996 555667889999999883

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=4.1e-19  Score=154.98  Aligned_cols=206  Identities=18%  Similarity=0.282  Sum_probs=162.4

Q ss_pred             CCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeE
Q 010883          230 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC  301 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  301 (498)
                      ..||+++|..++|+| +...||+|+.|.+|.||.+..+       +++..+.+|...|-.++|+|.-.+.|++++.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            348999999999999 6678999999999999998765       34667889999999999998889999999999999


Q ss_pred             EEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883          302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA  381 (498)
Q Consensus       302 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (498)
                      .+|++.    ++..+..+. |.+.|.++.|+.||.+|++.+.|..|+|||.++.                          
T Consensus       157 ~iWnv~----tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~--------------------------  205 (472)
T KOG0303|consen  157 SIWNVG----TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG--------------------------  205 (472)
T ss_pred             EEEecc----CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC--------------------------
Confidence            999998    777777777 9999999999999999999999999999999983                          


Q ss_pred             ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe---cCCeEEEEECCCCcE---EEEeccCCCCeeeeEE
Q 010883          382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSW  455 (498)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~  455 (498)
                              ..+..-.+|...... +..|-.    +|.++.+|-   .+..+-+||....+.   ...+. .+..|.---|
T Consensus       206 --------~~v~e~~~heG~k~~-Raifl~----~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFy  271 (472)
T KOG0303|consen  206 --------TVVSEGVAHEGAKPA-RAIFLA----SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFY  271 (472)
T ss_pred             --------cEeeecccccCCCcc-eeEEec----cCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeee
Confidence                    444444455443322 222222    677555553   367899999766443   34444 3445666678


Q ss_pred             cCCCCeEEEEe-CCCcEEEecCCCCC
Q 010883          456 HPSQPMLVSSS-WDGDVVRWEFPGNG  480 (498)
Q Consensus       456 sp~~~~l~s~~-~Dg~i~iw~~~~~~  480 (498)
                      .+|..++..+| .|+.|+.|++....
T Consensus       272 D~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  272 DPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCCCCEEEEEecCCcceEEEEecCCC
Confidence            88988776665 69999999998765

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=6.9e-19  Score=148.78  Aligned_cols=224  Identities=20%  Similarity=0.312  Sum_probs=157.6

Q ss_pred             CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCCCeEEEEc
Q 010883          231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWD  305 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~vwd  305 (498)
                      .+|..-|.++.|.+-|+.+|+|+.|++|.|||....    .+....+.|.+.|..+.|.+| -|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            367778999999999999999999999999996543    355667899999999999754 489999999999999997


Q ss_pred             Cccc--c---CCCceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883          306 RRCL--N---VKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP  378 (498)
Q Consensus       306 ~~~~--~---~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (498)
                      -...  +   .......++......|+.+.|.|.  |-.+++++.||.++||+.........-....     .+..+..+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~-----Ei~~~~~p  164 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH-----EIQNVIDP  164 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh-----hhhhccCC
Confidence            5211  1   123455667778889999999984  6789999999999999986632211100000     00000000


Q ss_pred             cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-----CeEEEEECCCC----cEEEEeccCCCC
Q 010883          379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----SCVYVYDLVSG----EQVAALKYHTSP  449 (498)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~----~~~~~~~~h~~~  449 (498)
                      |.                .+.  ....+..|++.. -...+||+|+.+     +.++||....+    ..+.++.+|..+
T Consensus       165 p~----------------~~~--~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp  225 (361)
T KOG2445|consen  165 PG----------------KNK--QPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP  225 (361)
T ss_pred             cc----------------ccc--CcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence            00                000  111112222211 134578888776     57889976553    346677799999


Q ss_pred             eeeeEEcCCC----CeEEEEeCCCcEEEecCCCC
Q 010883          450 VRDCSWHPSQ----PMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       450 v~~l~~sp~~----~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      |++++|.|+-    .+||+++.|| |+||++...
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~  258 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVA  258 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEeec
Confidence            9999999963    3899999999 999999853

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=1.3e-18  Score=166.78  Aligned_cols=280  Identities=13%  Similarity=0.166  Sum_probs=197.1

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG  231 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (498)
                      +.+.||++............   ...|+++.|+| +..+|+.|..+|.|.+||+..+.......+.          ....
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~---~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls----------~~~~  288 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLES---PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS----------ALEV  288 (555)
T ss_pred             ceEEEEecCCCCCceEEEec---CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc----------cccc
Confidence            47899999876333333322   33799999999 5567788889999999999877653211111          1223


Q ss_pred             CceecEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeE-----EEe-------ccCCCeeEEEEeCCCCCEEEEeeC
Q 010883          232 GYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSL-----RIL-------AHTSDVNTVCFGDESGHLIYSGSD  297 (498)
Q Consensus       232 ~h~~~i~~~~~s~~g~--~l~~g~~dg~i~vwd~~~~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~l~s~s~  297 (498)
                      .|+.++..+.|..+..  -+++++.||.|..|+++.-....     ...       .....+++++|.+.+.+.|+.|+.
T Consensus       289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe  368 (555)
T KOG1587|consen  289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE  368 (555)
T ss_pred             cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence            6888999999987544  49999999999999876533211     011       122468999998888999999999


Q ss_pred             CCeEEEEcCccccCCC----ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccce
Q 010883          298 DNLCKVWDRRCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR  373 (498)
Q Consensus       298 dg~i~vwd~~~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  373 (498)
                      +|.|.--+........    +....+..|.++|+++.++|=+..++..+.|-+++||.-....                 
T Consensus       369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-----------------  431 (555)
T KOG1587|consen  369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-----------------  431 (555)
T ss_pred             CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-----------------
Confidence            9999884443222222    3455667789999999999977655555559999999977321                 


Q ss_pred             eecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC--cEEEEeccCCCCee
Q 010883          374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVR  451 (498)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~  451 (498)
                                      .++..+..+.  ..+....|+|.   ....++++..||.|.|||+...  .++.....+....+
T Consensus       432 ----------------~Pl~~~~~~~--~~v~~vaWSpt---rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~  490 (555)
T KOG1587|consen  432 ----------------SPLLSLDSSP--DYVTDVAWSPT---RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALT  490 (555)
T ss_pred             ----------------Ccchhhhhcc--ceeeeeEEcCc---CceEEEEEcCCCceehhhhhccccCCcccccccccccc
Confidence                            2233333333  12444455554   3467888888999999998654  45555555667778


Q ss_pred             eeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          452 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       452 ~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      .+.|++.|+.|+.|...|.+++|++...-..+
T Consensus       491 ~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~  522 (555)
T KOG1587|consen  491 RVRWSPNGKLLAVGDANGTTHILKLSESLAVP  522 (555)
T ss_pred             eeecCCCCcEEEEecCCCcEEEEEcCchhhcc
Confidence            88999999999999999999999997554433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=3e-19  Score=165.70  Aligned_cols=263  Identities=17%  Similarity=0.228  Sum_probs=197.1

Q ss_pred             CCccccccccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEE
Q 010883          102 GRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD  181 (498)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~  181 (498)
                      |..-+-+++....+-+.-.....+++.+|++.|+|++|+.||+++|+|+.|..|.+|+-.-.     -.....|...|.|
T Consensus        24 GsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-----G~LkYSH~D~IQC   98 (1081)
T KOG1538|consen   24 GTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-----GILKYSHNDAIQC   98 (1081)
T ss_pred             CceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-----ceeeeccCCeeeE
Confidence            33344455555555555555667899999999999999999999999999999999986532     1233467889999


Q ss_pred             EEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883          182 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  261 (498)
Q Consensus       182 ~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw  261 (498)
                      +.|+|-...|++++-+ ..-+|..+.........                  ...|.+++|..||++|+.|-.+|+|.+-
T Consensus        99 MsFNP~~h~LasCsLs-dFglWS~~qK~V~K~ks------------------s~R~~~CsWtnDGqylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   99 MSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKS------------------SSRIICCSWTNDGQYLALGMFNGTISIR  159 (1081)
T ss_pred             eecCchHHHhhhcchh-hccccChhhhhHHhhhh------------------heeEEEeeecCCCcEEEEeccCceEEee
Confidence            9999999999998764 47789876554332221                  2278999999999999999999999998


Q ss_pred             ECCCCeeeEEEe---ccCCCeeEEEEeCCC----CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883          262 DLEANKLSLRIL---AHTSDVNTVCFGDES----GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD  334 (498)
Q Consensus       262 d~~~~~~~~~~~---~~~~~v~~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  334 (498)
                      +-. ++....+.   +...+|.+++|+|..    ...+++.....++.+|.+     .++.+..-....-...|+.+-++
T Consensus       160 Nk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~CisYf~N  233 (1081)
T KOG1538|consen  160 NKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPCCISYFTN  233 (1081)
T ss_pred             cCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCchhheeccC
Confidence            653 33333333   467899999998643    357888888888888888     45555544444455678999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      |.+++.|+.|+.+.+|.-..                                   -.+-+...      .....|..+..
T Consensus       234 GEy~LiGGsdk~L~~fTR~G-----------------------------------vrLGTvg~------~D~WIWtV~~~  272 (1081)
T KOG1538|consen  234 GEYILLGGSDKQLSLFTRDG-----------------------------------VRLGTVGE------QDSWIWTVQAK  272 (1081)
T ss_pred             CcEEEEccCCCceEEEeecC-----------------------------------eEEeeccc------cceeEEEEEEc
Confidence            99999999999999997543                                   11111111      22345666778


Q ss_pred             CCCcEEEEEecCCeEEEEECC
Q 010883          415 TGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~  435 (498)
                      |++++++.|+.||+|.-|++.
T Consensus       273 PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  273 PNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cCCceEEEEEccCeeehhhhH
Confidence            899999999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=4.3e-19  Score=154.84  Aligned_cols=234  Identities=14%  Similarity=0.206  Sum_probs=172.3

Q ss_pred             CCeEEEEECC-CCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccC
Q 010883          152 ASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  229 (498)
Q Consensus       152 dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (498)
                      .|-..|--+. .|+.-.......+|+++|..++|+| +...||+||.|.+|.||.+..+-......         .+...
T Consensus        56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------epvv~  126 (472)
T KOG0303|consen   56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------EPVVE  126 (472)
T ss_pred             CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------cceEE
Confidence            3344444433 2322333445578999999999999 66789999999999999997654432222         11122


Q ss_pred             CCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc
Q 010883          230 DGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC  308 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~  308 (498)
                      ..||...|--++|+|.. +.|++++.|..|.+||+.+++.+.++. |...|.++.|+ .+|.+|++.+.|..|+|||.+ 
T Consensus       127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr-  203 (472)
T KOG0303|consen  127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPR-  203 (472)
T ss_pred             EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec-cCCceeeeecccceeEEEcCC-
Confidence            34799999999999954 578899999999999999999988886 99999999998 899999999999999999999 


Q ss_pred             ccCCCceeEEecccccc-EEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883          309 LNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL  384 (498)
Q Consensus       309 ~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (498)
                         .++.+..-.+|.+. -..+.|-.++..+.+|-   .+.++-+||..+.+....                        
T Consensus       204 ---~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~------------------------  256 (472)
T KOG0303|consen  204 ---RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIA------------------------  256 (472)
T ss_pred             ---CCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcce------------------------
Confidence               88888888888763 34455777888554443   467899999887553311                        


Q ss_pred             cCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCc
Q 010883          385 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGE  438 (498)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~  438 (498)
                             ...+....       ...-|.|.+|.++|+.++ .|+.|+-|.+....
T Consensus       257 -------~~elDtSn-------Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  257 -------LQELDTSN-------GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             -------eEEeccCC-------ceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence                   12222221       123346777888887655 59999999987655

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=6.1e-20  Score=167.32  Aligned_cols=258  Identities=16%  Similarity=0.223  Sum_probs=179.1

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ....|...|..++|.|....|++++.||.+.+|+++.........+        .+.....+|.++|.|+++.+++.+++
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~--------epi~tfraH~gPVl~v~v~~n~~~~y  360 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV--------EPILTFRAHEGPVLCVVVPSNGEHCY  360 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce--------eeeEEEecccCceEEEEecCCceEEE
Confidence            4456677899999999999999999999999999943111111110        11122347999999999999999999


Q ss_pred             EEeCCCeEEEEECCCC----------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec
Q 010883          251 AGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM  320 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  320 (498)
                      +|+.||+|+.|++...          .....+.+|.+.|+.++++ .....|++++.||++++|+..    ...+ .++.
T Consensus       361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~~----~~~~-~~f~  434 (577)
T KOG0642|consen  361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEPT----EESP-CTFG  434 (577)
T ss_pred             eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec-ccccceeeecCCceEEeeccC----CcCc-cccC
Confidence            9999999999976532          1234577999999999998 667789999999999999985    2222 2332


Q ss_pred             ccc--ccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883          321 GHL--EGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG  397 (498)
Q Consensus       321 ~~~--~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (498)
                      ...  +...++.+.... .+.++   +...+.+++..+...                               +.+..+..
T Consensus       435 ~~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~-------------------------------s~~~~~~s  480 (577)
T KOG0642|consen  435 EPKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVV-------------------------------SDLLIFES  480 (577)
T ss_pred             CccccCCcceEeeccchhHhhhh---hcccccccchhhhhh-------------------------------hheeeccc
Confidence            222  233445543222 12222   233333333332211                               11111111


Q ss_pred             Cc-----eeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEE
Q 010883          398 HS-----VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV  472 (498)
Q Consensus       398 ~~-----~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~  472 (498)
                      ..     ....+.....    .|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.||.++
T Consensus       481 ~~~~~~~~~~~in~vVs----~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~  556 (577)
T KOG0642|consen  481 SASPGPRRYPQINKVVS----HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVR  556 (577)
T ss_pred             cCCCcccccCccceEEe----cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceee
Confidence            10     0011222223    33678899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCC
Q 010883          473 RWEFPGNG  480 (498)
Q Consensus       473 iw~~~~~~  480 (498)
                      +|.+....
T Consensus       557 l~kld~k~  564 (577)
T KOG0642|consen  557 LWKLDVKT  564 (577)
T ss_pred             hhhccchh
Confidence            99986543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.83  E-value=2.2e-18  Score=146.66  Aligned_cols=214  Identities=15%  Similarity=0.116  Sum_probs=171.5

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC-C
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-G  206 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~-~  206 (498)
                      +-...+|+|.+|++|++.+|.+.....|.||................|...|+.+.|+|..+.|++++.|..-++|.. .
T Consensus         7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            344678999999999999999999999999999877656666677889999999999999999999999999999998 5


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee----EEEeccCCCeeEE
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTV  282 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~  282 (498)
                      .++......+..              +....+++.|+|.++.||+|+....|.||-++...--    ..-..+.+.|+++
T Consensus        87 ~~~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl  152 (361)
T KOG1523|consen   87 GGTWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL  152 (361)
T ss_pred             CCeeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee
Confidence            666555444433              4447999999999999999999999999987654321    1223577889999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccC--------------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK  348 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~  348 (498)
                      .|+ +++-+|++|+.|+.++++.......              -+..+..+....+.+..+.|+|+|..|+-.+.|..+.
T Consensus       153 dWh-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~  231 (361)
T KOG1523|consen  153 DWH-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS  231 (361)
T ss_pred             ecc-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence            998 7888999999999999997531111              1112223334557899999999999999999999999


Q ss_pred             EEeCCCCC
Q 010883          349 LWDIRKMS  356 (498)
Q Consensus       349 iwd~~~~~  356 (498)
                      +-|.....
T Consensus       232 ~~da~~p~  239 (361)
T KOG1523|consen  232 FVDAAGPS  239 (361)
T ss_pred             EeecCCCc
Confidence            99987754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=1.3e-16  Score=155.88  Aligned_cols=291  Identities=28%  Similarity=0.450  Sum_probs=215.3

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCe
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPI  199 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~  199 (498)
                      .....+..|...|.+++|+|++.++++++. |+.+++|++..+..+..   ...|...|.+++|+|++. .+++++.|+.
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  222 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---LAGHTDPVSSLAFSPDGGLLIASGSSDGT  222 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---eccCCCceEEEEEcCCcceEEEEecCCCc
Confidence            445677899999999999999999998885 99999999987544433   234777999999999998 5555589999


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEeccCCC
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD  278 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~  278 (498)
                      |++||...+..... .              ..+|.... ...|++++..+++++.++.+++|++..... ...+..|...
T Consensus       223 i~~wd~~~~~~~~~-~--------------~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  286 (466)
T COG2319         223 IRLWDLSTGKLLRS-T--------------LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS  286 (466)
T ss_pred             EEEEECCCCcEEee-e--------------cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence            99998775544331 0              01233343 338999998899999999999999987664 4444678899


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCC
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKM  355 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~  355 (498)
                      +.++.|. +++..+++++.|+.+.+||..    .........  .|...+..+.+.+++..++.+ ..|+.+.+|++...
T Consensus       287 v~~~~~~-~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  361 (466)
T COG2319         287 VLSVAFS-PDGKLLASGSSDGTVRLWDLE----TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG  361 (466)
T ss_pred             EEEEEEC-CCCCEEEEeeCCCcEEEEEcC----CCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence            9999998 567777779999999999886    444444443  677789999994332456555 67889999999873


Q ss_pred             CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE-EEecCCeEEEEEC
Q 010883          356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVYDL  434 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iwd~  434 (498)
                      .                                  ..........   .    ....+++ ...++ .+..++.+.+|+.
T Consensus       362 ~----------------------------------~~~~~~~~~~---~----~~~~~~~-~~~~~~~~~~~~~~~~~~~  399 (466)
T COG2319         362 K----------------------------------PLKTLEGHSN---V----LSVSFSP-DGRVVSSGSTDGTVRLWDL  399 (466)
T ss_pred             c----------------------------------eeEEecCCce---E----EEEEECC-CCCEEEEecCCCceEEEec
Confidence            2                                  1111111111   1    1123333 22333 3788999999999


Q ss_pred             CCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          435 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       435 ~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      ...........+...+....+++++..+++++.++.+.+|+...
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             ccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            99888777765447899999999999999999999999999987

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=4.4e-18  Score=163.04  Aligned_cols=278  Identities=16%  Similarity=0.160  Sum_probs=192.9

Q ss_pred             cccccccCCCCCccccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEE---EEEeecCCCceeEEEEEeCCCC
Q 010883          113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQ  188 (498)
Q Consensus       113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~  188 (498)
                      ..++.+.....+...-.-..+|.|++|+|. .++||.|..+|.|.+||+..+...   ........|..+++.+.|..+.
T Consensus       224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~  303 (555)
T KOG1587|consen  224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE  303 (555)
T ss_pred             EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence            344455444556666677899999999995 578888999999999999876431   1223345788899999998755


Q ss_pred             Ce--EEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 010883          189 RH--LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA  265 (498)
Q Consensus       189 ~~--l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~  265 (498)
                      .-  +++++.||.|..|+++.-.............    ...........+++++|.+ +-..+++|+..|.|.--+...
T Consensus       304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             CCCceEEEecCCcEeeeeccccccchhhccccccc----ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            44  8999999999999876433211111111000    0001112233789999998 556799999999998743322


Q ss_pred             Ce--------eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-C
Q 010883          266 NK--------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-R  336 (498)
Q Consensus       266 ~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~  336 (498)
                      .+        ....+..|.++|.++.++|-...+|++++ |.+|+||...   ....++..+..+...+++++|||.. .
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---~~~~Pl~~~~~~~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---VIASPLLSLDSSPDYVTDVAWSPTRPA  455 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc---CCCCcchhhhhccceeeeeEEcCcCce
Confidence            21        12345578899999999976666666666 9999999875   2456777777788889999999965 5


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC
Q 010883          337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG  416 (498)
Q Consensus       337 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  416 (498)
                      .|+++..||.|.+||+......+                                +.......      .......++++
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~P--------------------------------v~s~~~~~------~~l~~~~~s~~  497 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEP--------------------------------VLSQKVCS------PALTRVRWSPN  497 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCC--------------------------------cccccccc------cccceeecCCC
Confidence            67788889999999998744322                                22222111      11122256668


Q ss_pred             CcEEEEEecCCeEEEEECCC
Q 010883          417 QKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       417 ~~~l~~g~~dg~i~iwd~~~  436 (498)
                      |+.|++|...|.+++|++..
T Consensus       498 g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  498 GKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CcEEEEecCCCcEEEEEcCc
Confidence            99999999999999999853

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=6.7e-18  Score=167.03  Aligned_cols=317  Identities=16%  Similarity=0.197  Sum_probs=202.4

Q ss_pred             cccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeE
Q 010883          126 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV  200 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i  200 (498)
                      .++.|...|..++.+++. .++++|+.||+|++|++..-    ...............+.++.+.+.+..+|+++.||.|
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            567899999999988765 99999999999999998641    2222233333345689999999999999999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCeeeEEEe--ccC
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHT  276 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~  276 (498)
                      ++.+++.................       .+...-|..-+|.. .+. .|+.+...+.|..||+.......++.  ...
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~-------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNL-------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EEEEccccccccceeeeeecccc-------cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            99998763211111100000000       00111233334443 233 68888888999999998766544443  345


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEEEcCC---CCEEEEEe--CCCcEEEE
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGD---GRYLISNG--KDQAIKLW  350 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~---~~~l~s~~--~dg~i~iw  350 (498)
                      +.|++++.. +.+++++.|+..|.+.+||+|    -..++..+. ++..+|+.+..+|-   ....++++  ..+.|.+|
T Consensus      1196 G~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1196 GLVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             cceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            789999996 788899999999999999999    666666654 34467777777653   34555444  46789999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY  430 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  430 (498)
                      ++.++.....+-.........  +          ..+.+.   .-+.+.  .....+.    +...+.++++|+.|..|+
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls--~----------~~Ps~~---~~kp~~--~~~~~~~----~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILS--Y----------ALPSND---ARKPDS--LAGISCG----VCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchh--h----------hccccc---CCCCCc--ccceeee----cccCCceeeecCCcccee
Confidence            999875443332110000000  0          000000   000000  1111111    222467889999999999


Q ss_pred             EEECCCCcEE------------------------------------------------EEe--------ccCCCCeeeeE
Q 010883          431 VYDLVSGEQV------------------------------------------------AAL--------KYHTSPVRDCS  454 (498)
Q Consensus       431 iwd~~~~~~~------------------------------------------------~~~--------~~h~~~v~~l~  454 (498)
                      .||....+..                                                ..+        ..|..+|++++
T Consensus      1330 ~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma 1409 (1431)
T KOG1240|consen 1330 KWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMA 1409 (1431)
T ss_pred             eccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhh
Confidence            9996532111                                                000        13778899998


Q ss_pred             EcCCCC-eEEEEeCCCcEEEec
Q 010883          455 WHPSQP-MLVSSSWDGDVVRWE  475 (498)
Q Consensus       455 ~sp~~~-~l~s~~~Dg~i~iw~  475 (498)
                      +....+ +|++++.||.|+||.
T Consensus      1410 ~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1410 TLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhccCccEEEEecCCCeeeecC
Confidence            876554 899999999999994

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=5e-18  Score=149.96  Aligned_cols=205  Identities=21%  Similarity=0.246  Sum_probs=155.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE
Q 010883          238 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG  317 (498)
Q Consensus       238 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  317 (498)
                      .+++|+.+|..|++|+.||.++||+..+...+.....|...|.++.|+ +++.+|++-+.| ..+||+.+    .+..+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~----~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVN----TGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEec----cCchhh
Confidence            789999999999999999999999999888888888999999999998 899999999999 99999998    555554


Q ss_pred             Eecc--ccccEEEEEEcCCC---C--EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883          318 VLMG--HLEGITFIDSRGDG---R--YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ  390 (498)
Q Consensus       318 ~~~~--~~~~v~~l~~~~~~---~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (498)
                      ....  .......+.|+.|+   .  .++....-+.|+.||+.........                            +
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l----------------------------~  273 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL----------------------------R  273 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc----------------------------c
Confidence            4432  22345567777666   2  2333334566777776542211000                            0


Q ss_pred             eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                      .......+       ....+++.|+||++++.|+.||.|-|++..+.+.++..+ .|...|+.+.|+||.+++++.+.|.
T Consensus       274 ~~~~~~~~-------~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  274 LRKKIKRF-------KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             hhhhhhcc-------CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence            00000111       112344677899999999999999999999988877664 8999999999999999999999999


Q ss_pred             cEEEecCCCCCCCC
Q 010883          470 DVVRWEFPGNGEAA  483 (498)
Q Consensus       470 ~i~iw~~~~~~~~~  483 (498)
                      .+.+..+.......
T Consensus       347 ~~~v~~l~vd~~~~  360 (398)
T KOG0771|consen  347 EAAVTKLAVDKTMQ  360 (398)
T ss_pred             ceeEEEEeeccccc
Confidence            99999988755443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=9.5e-19  Score=161.48  Aligned_cols=243  Identities=16%  Similarity=0.193  Sum_probs=172.9

Q ss_pred             eCCCCCeEEE--EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEE
Q 010883          184 LSPDQRHLVY--ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYV  260 (498)
Q Consensus       184 ~sp~~~~l~~--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~v  260 (498)
                      |..+...+++  ++..|.|.||++...-...--.+.....            ...|+++.|.| |...|++++.||.|++
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N------------gt~vtDl~WdPFD~~rLAVa~ddg~i~l  654 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN------------GTLVTDLHWDPFDDERLAVATDDGQINL  654 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc------------CceeeecccCCCChHHeeecccCceEEE
Confidence            3444555554  4557899999987543222222222221            12699999999 7788999999999999


Q ss_pred             EECCCCe-------eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          261 YDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       261 wd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      |.+..+.       +...+..|...|+++.|+|--.+.|++++.|.+|++||++    ..+....+.+|.+.|..++|+|
T Consensus       655 Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~----~~~~~~~l~gHtdqIf~~AWSp  730 (1012)
T KOG1445|consen  655 WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA----NAKLYSRLVGHTDQIFGIAWSP  730 (1012)
T ss_pred             EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh----hhhhhheeccCcCceeEEEECC
Confidence            9987653       3456778999999999998888999999999999999998    7788889999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      +|+.+++.+.||+|++|+.++....                                 +..-.+... ....++.|..  
T Consensus       731 dGr~~AtVcKDg~~rVy~Prs~e~p---------------------------------v~Eg~gpvg-tRgARi~wac--  774 (1012)
T KOG1445|consen  731 DGRRIATVCKDGTLRVYEPRSREQP---------------------------------VYEGKGPVG-TRGARILWAC--  774 (1012)
T ss_pred             CCcceeeeecCceEEEeCCCCCCCc---------------------------------cccCCCCcc-CcceeEEEEe--
Confidence            9999999999999999999885432                                 221111111 1112333443  


Q ss_pred             CCCCcEEEEEecC----CeEEEEECCCC--cEEEEeccC-CCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCC
Q 010883          414 STGQKYIYTGSHD----SCVYVYDLVSG--EQVAALKYH-TSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       414 s~~~~~l~~g~~d----g~i~iwd~~~~--~~~~~~~~h-~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~  480 (498)
                        ||+++++.+.|    ..|.+||..+-  ..+.+..-. .-.+.--.+.+|.. ++++|-.|..|.+|++-...
T Consensus       775 --dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  775 --DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             --cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence              89998887765    46889987653  333332211 11112223455655 67788889999999986554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=8.7e-19  Score=159.89  Aligned_cols=272  Identities=11%  Similarity=0.109  Sum_probs=192.8

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-----CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      ..+..|.+.|..++|.|-...|++++.||+|.+|++..     ...+.......+|.++|.|+++.+++..+.+|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            47789999999999999999999999999999999932     3456667788899999999999999999999999999


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCC
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTS  277 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~  277 (498)
                      |+.|++....- .    ...++.. .-.....||++.|+.+++++....|++++.||++++|+.....+ ..+.  ...+
T Consensus       368 I~~w~~p~n~d-p----~ds~dp~-vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g  440 (577)
T KOG0642|consen  368 IRCWNLPPNQD-P----DDSYDPS-VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG  440 (577)
T ss_pred             eeeeccCCCCC-c----ccccCcc-hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence            99998762211 0    0000000 01112348999999999999988999999999999999876655 2222  2224


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc-------ccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      ...++.+-.......++...-+.-.+++..    ....+..+..       -...+..+.++|...+.+++..|+.|+++
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e----v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~  516 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDME----VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF  516 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhh----hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence            456666642222233333333333333332    2222222211       12346778899999999999999999999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY  430 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  430 (498)
                      |..+.                                  ..+.....|..      ...+.++.|+|-+|++++.|+.++
T Consensus       517 dn~~~----------------------------------~~l~s~~a~~~------svtslai~~ng~~l~s~s~d~sv~  556 (577)
T KOG0642|consen  517 DNKTG----------------------------------KILHSMVAHKD------SVTSLAIDPNGPYLMSGSHDGSVR  556 (577)
T ss_pred             ccccc----------------------------------ccchheeeccc------eecceeecCCCceEEeecCCceee
Confidence            99874                                  33333333332      233447778999999999999999


Q ss_pred             EEECCCCcEEEEeccCC
Q 010883          431 VYDLVSGEQVAALKYHT  447 (498)
Q Consensus       431 iwd~~~~~~~~~~~~h~  447 (498)
                      +|.+....++.....|.
T Consensus       557 l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  557 LWKLDVKTCVLESTAHR  573 (577)
T ss_pred             hhhccchheeecccccc
Confidence            99998888777766664

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=4.1e-16  Score=135.52  Aligned_cols=280  Identities=15%  Similarity=0.252  Sum_probs=199.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC--eEEEEECCCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~--~i~iwd~~~~  208 (498)
                      ...+..+.|+.|...|..|+.|| .++|+.+.-.+..   ........|.-+-|+  ..++|..+.+.  .+++++.+.+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence            45677788999999999999998 6788877643311   111222245555564  45566655543  5889988877


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec---cCCCeeEEEEe
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFG  285 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~  285 (498)
                      ..+.....+.                 +|.++.++.+  .|+++-.+ .|+|||+++.+.+.++..   +...+.++.++
T Consensus        79 ~~ICe~~fpt-----------------~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n  138 (391)
T KOG2110|consen   79 TTICEIFFPT-----------------SILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPN  138 (391)
T ss_pred             ceEEEEecCC-----------------ceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccC
Confidence            7665554433                 7999999754  56666554 499999999999887753   44556666665


Q ss_pred             CCCCCEEEEee--CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCCCccccc
Q 010883          286 DESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCN  362 (498)
Q Consensus       286 ~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~  362 (498)
                       ..+.+++.-+  ..|.|.+||+.    +-+++..+..|.+.+.+++|+++|.+||+++..|+ |||+.+.+        
T Consensus       139 -~~n~ylAyp~s~t~GdV~l~d~~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--------  205 (391)
T KOG2110|consen  139 -NANCYLAYPGSTTSGDVVLFDTI----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--------  205 (391)
T ss_pred             -CCCceEEecCCCCCceEEEEEcc----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------
Confidence             4455666533  46899999998    78889999999999999999999999999999997 79999977        


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE---
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ---  439 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~---  439 (498)
                                                ++.+..|+.......    .++.+|+|++.+|++.+..++|+||.+.....   
T Consensus       206 --------------------------G~kl~eFRRG~~~~~----IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~  255 (391)
T KOG2110|consen  206 --------------------------GQKLYEFRRGTYPVS----IYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPP  255 (391)
T ss_pred             --------------------------ccEeeeeeCCceeeE----EEEEEECCCCCeEEEecCCCeEEEEEecccccCCC
Confidence                                      566777765553333    45667888999999999999999998753210   


Q ss_pred             ----------------------------------EEEeccCCCCe-eeeEEc--CCCCeEEEEeCCCcEEEecCCCC
Q 010883          440 ----------------------------------VAALKYHTSPV-RDCSWH--PSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       440 ----------------------------------~~~~~~h~~~v-~~l~~s--p~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                                                        ....+...+.. ..+.+.  +..+.+..++.||.++.|.++..
T Consensus       256 ~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  256 ESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK  332 (391)
T ss_pred             CCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence                                              00001011111 223333  46778999999999999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=4.6e-18  Score=164.34  Aligned_cols=235  Identities=20%  Similarity=0.220  Sum_probs=163.2

Q ss_pred             CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCcccccc
Q 010883          152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA  228 (498)
Q Consensus       152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (498)
                      +..|.+||.+... ...   ...+...+...+|+|||+.|++++.+   ..|++||+.+++...+....           
T Consensus       183 ~~~i~i~d~dg~~-~~~---lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-----------  247 (429)
T PRK01742        183 PYEVRVADYDGFN-QFI---VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-----------  247 (429)
T ss_pred             eEEEEEECCCCCC-ceE---eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence            4689999987653 222   23445579999999999999988754   37999999887643332211           


Q ss_pred             CCCCceecEEEEEEcCCCCEEEEEe-CCCeE--EEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEE
Q 010883          229 DDGGYSFGIFSLKFSTDGRELVAGS-SDDCI--YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVW  304 (498)
Q Consensus       229 ~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i--~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vw  304 (498)
                         +   ....++|+|||+.|+.+. .+|.+  ++||+.+++. ..+..+...+....|+ ++++.|+.+ ..+|...||
T Consensus       248 ---g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~  319 (429)
T PRK01742        248 ---G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVY  319 (429)
T ss_pred             ---C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEE
Confidence               1   233689999999888765 57754  5557766654 5566777778899998 677765544 467888898


Q ss_pred             cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883          305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL  384 (498)
Q Consensus       305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (498)
                      ++...   +.....+ .+..  ....|+|||++|+..+.++ +.+||+.+...                           
T Consensus       320 ~~~~~---~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~---------------------------  365 (429)
T PRK01742        320 RMSAS---GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST---------------------------  365 (429)
T ss_pred             EEECC---CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe---------------------------
Confidence            87522   1222222 3333  4578999999998887765 66699876321                           


Q ss_pred             cCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC--CCCcEEEEeccCCCCeeeeEEcCC
Q 010883          385 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL--VSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                              ..+....       ...++.|+|||++|+.++.++.+.+|++  .+|+.+..+..|.+.+...+|+|-
T Consensus       366 --------~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        366 --------EVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             --------EEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence                    1111110       0135678999999999999998888876  358888889888889999999985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=1.2e-17  Score=142.33  Aligned_cols=255  Identities=16%  Similarity=0.221  Sum_probs=177.6

Q ss_pred             EEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccc---ccccccCccccccCCCCceecEEEEEEc-------CCCCE
Q 010883          179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN---VTEIHDGLDFSAADDGGYSFGIFSLKFS-------TDGRE  248 (498)
Q Consensus       179 v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~~~~s-------~~g~~  248 (498)
                      ...+.|+|||..|++-+.|..+++|++...-......   ....+..+..      .....|...+|-       |+..+
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~------~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY------QEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe------ccCCEEEEEEeeeccccCCCccce
Confidence            4457899999999999999999999985422111100   0000000000      011256777765       56778


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEec--cCC---CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE----e
Q 010883          249 LVAGSSDDCIYVYDLEANKLSLRILA--HTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----L  319 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~  319 (498)
                      +++.+.+.-|.+||.-+++....+.+  |..   ...+++|+ +++..|++|. ...|++||+...........+    -
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGK  203 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccc
Confidence            99999999999999999998766653  433   34689998 8898887764 679999999422211111111    1


Q ss_pred             ccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883          320 MGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH  398 (498)
Q Consensus       320 ~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (498)
                      .+..+-|.+++|+|- ...++.++....+-||.-..                                  ..++..+.+|
T Consensus       204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----------------------------------~~pl~llggh  249 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----------------------------------RRPLQLLGGH  249 (406)
T ss_pred             ccccceeeeeeccCCCCcceeeecccceeeeEecCC----------------------------------CCceeeeccc
Confidence            233667899999995 45899999988888887665                                  3566666677


Q ss_pred             ceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCC-CcEEEEeccCCC-Cee--eeEEcCCCCeEEEEeCCCcEEE
Q 010883          399 SVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS-GEQVAALKYHTS-PVR--DCSWHPSQPMLVSSSWDGDVVR  473 (498)
Q Consensus       399 ~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~-~~~~~~~~~h~~-~v~--~l~~sp~~~~l~s~~~Dg~i~i  473 (498)
                      ....+..      .|.++|+.|++|.. |-.|..||++. +.++..+..|.+ .-.  -....|++++|++|+.||.|++
T Consensus       250 ~gGvThL------~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v  323 (406)
T KOG2919|consen  250 GGGVTHL------QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV  323 (406)
T ss_pred             CCCeeeE------EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE
Confidence            7444433      56669999999986 77899999976 556777777765 222  3455788999999999999999


Q ss_pred             ecCCCCCC
Q 010883          474 WEFPGNGE  481 (498)
Q Consensus       474 w~~~~~~~  481 (498)
                      ||+.....
T Consensus       324 wdlk~~gn  331 (406)
T KOG2919|consen  324 WDLKDLGN  331 (406)
T ss_pred             EecCCCCC
Confidence            99988544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.3e-18  Score=149.24  Aligned_cols=263  Identities=12%  Similarity=0.115  Sum_probs=184.8

Q ss_pred             CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      .+|.+.|+++.|+.++++|++|+.|..+++|+++..-.....+....         ....|...|.|++|...++.+++|
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~---------~~~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV---------MEHPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee---------ccCccccceEEEEEccCCeeEecC
Confidence            47888999999999999999999999999999875322222111110         112466789999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeEEEeccC---CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          253 SSDDCIYVYDLEANKLSLRILAHT---SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      ..+++|...|+++.+.+..+ .|.   +.|..+..+ |..+.|++.+.++.|.+||.+.......++. +.........+
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~  200 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTA  200 (609)
T ss_pred             CCcceeEeeecccceeeeee-cccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceee
Confidence            99999999999998877665 444   589999998 4578999999999999999984432333332 22344567788


Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883          330 DSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH  408 (498)
Q Consensus       330 ~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (498)
                      .|+|. ..+|++++..+-+.+||++......-.                                 +.+......-..-.
T Consensus       201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~---------------------------------~~~~~~L~~~~~~~  247 (609)
T KOG4227|consen  201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQ---------------------------------RSMFKGLPQENTEW  247 (609)
T ss_pred             eecCCCceeEEeccccCCCCceeeccccchHHh---------------------------------hhccccCcccchhh
Confidence            89995 467788888899999999985432211                                 11100000000011


Q ss_pred             eccccCCCCcEEEEEecCCeEEEEECCCCcE-EEEeccCC-------CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~-------~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      .+..|+|+|+.+++--....-.+||+.+.++ +..+. |.       ..+.+++|.-|.. +++|+.+-.|++|.++...
T Consensus       248 M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~  325 (609)
T KOG4227|consen  248 MGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRAN  325 (609)
T ss_pred             hheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCc
Confidence            2335677888888776666667888877443 33333 32       3567788876654 9999999999999998765


Q ss_pred             CC
Q 010883          481 EA  482 (498)
Q Consensus       481 ~~  482 (498)
                      +.
T Consensus       326 ds  327 (609)
T KOG4227|consen  326 DS  327 (609)
T ss_pred             cc
Confidence            54

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=4.7e-18  Score=142.50  Aligned_cols=218  Identities=15%  Similarity=0.215  Sum_probs=166.3

Q ss_pred             CCCCCcccc-CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEeCC--CCCeEEE
Q 010883          120 PVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSP--DQRHLVY  193 (498)
Q Consensus       120 ~~~~~~~l~-~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~sp--~~~~l~~  193 (498)
                      +.+....|+ .+-+.|.|+.|.|++..||+-. |..|.+|+++.+..+.....   ...++...++-+|+|  +++.+++
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence            333334444 5566999999999999999875 78899999998765322222   123455788899999  7787776


Q ss_pred             EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eeeEE
Q 010883          194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-KLSLR  271 (498)
Q Consensus       194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~-~~~~~  271 (498)
                      .+ |++++.||+++......+.  .             .|...|..+.|+|+.+ +|++|+.||.|++||.+.- .++..
T Consensus       190 t~-d~tl~~~D~RT~~~~~sI~--d-------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  190 TS-DSTLQFWDLRTMKKNNSIE--D-------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             eC-CCcEEEEEccchhhhcchh--h-------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence            54 7899999999765433222  1             4556899999999765 6788999999999999764 46778


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc-------------------------CCCceeEEeccccccE
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-------------------------VKGKPAGVLMGHLEGI  326 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------------------------~~~~~~~~~~~~~~~v  326 (498)
                      +.+|.-.|.++.|+|...+++++|+.|..|.+|......                         .....+.++..|.+.|
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV  333 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV  333 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence            889999999999999899999999999999999653211                         1223455677899999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEeCCC
Q 010883          327 TFIDSRG-DGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       327 ~~l~~~~-~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .+++|+. |.=.||+-+.||.+.|=.+..
T Consensus       334 Y~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  334 YALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            9999987 445678899999998866543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.80  E-value=1.4e-17  Score=142.24  Aligned_cols=331  Identities=18%  Similarity=0.208  Sum_probs=203.5

Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCceeccc
Q 010883          136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~~~~~  214 (498)
                      -++|||+|+++|+++.- .+.|-|..+-+..+. ...   -..|..+.|..|..+++.+ ..++.|.+|++...+....+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql-f~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL-FLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHH-HHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence            36899999999999765 788888876422211 111   2268889999998877765 56889999999876543332


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY  293 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  293 (498)
                      .  +              ...++.+++|+|||+.|+. ..-+-.|.+|.+.+.+... +.-.+..+..++|+ +++++.+
T Consensus        88 d--e--------------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~-~dg~f~a  149 (447)
T KOG4497|consen   88 D--E--------------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH-PDGQFCA  149 (447)
T ss_pred             c--c--------------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC-CCCceee
Confidence            2  1              2237899999999976655 4557889999998876543 22233456788887 7888777


Q ss_pred             EeeCC------------------------------------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883          294 SGSDD------------------------------------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       294 s~s~d------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                      ..+.-                                    ..+.+||.-    -.-.+..+ .-.-++..++|+|.+++
T Consensus       150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~----Leykv~aY-e~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV----LEYKVYAY-ERGLGLKFVEWSPCNQF  224 (447)
T ss_pred             eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch----hhheeeee-eeccceeEEEeccccce
Confidence            66531                                    234444431    11111111 12256889999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCCcccc---------------ccCcccccccceeecCCcCcccccCCC-----------Cce
Q 010883          338 LISNGKDQAIKLWDIRKMSSNASC---------------NLGFRSYEWDYRWMDYPPQARDLKHPC-----------DQS  391 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  391 (498)
                      |++|+.|+.+++.+--+-+.-..+               .............+.++|.........           ...
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            999999999988654332211111               000111111222333333222111110           111


Q ss_pred             EEEEccCceeEEEEEEEeccccCCCCcEEEEEec--CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          392 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                      +..++............-..+||+|..++++-..  -+.+.+||+...+.-..+. ...+|....|+|..+.|+.+....
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~s  383 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKS  383 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCc
Confidence            2222211111111112223468889999998765  4689999998877665554 456899999999999898888888


Q ss_pred             cEEEecCCCCCCCCCccchhceeece
Q 010883          470 DVVRWEFPGNGEAAPPLNKKRIRRRQ  495 (498)
Q Consensus       470 ~i~iw~~~~~~~~~~~~~~~~~~~~~  495 (498)
                      .+++|..........+.....+...+
T Consensus       384 rLY~W~psg~~~V~vP~~GF~i~~l~  409 (447)
T KOG4497|consen  384 RLYFWAPSGPRVVGVPKKGFNIQKLQ  409 (447)
T ss_pred             eEEEEcCCCceEEecCCCCceeeeEE
Confidence            89999988765544444444444444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2e-17  Score=135.40  Aligned_cols=253  Identities=15%  Similarity=0.249  Sum_probs=170.8

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      .|..-+|+|.+++|++|..+|.|.+..+.+-........     + ....-...+|.++|+.++|.  ..+|++|+ ||.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~-----g-k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~   82 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPP-----G-KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGL   82 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCC-----C-CcceeeccccCCCeeeeeee--hhheeecc-Cce
Confidence            466778999999999999999999999865322111100     0 01111224789999999998  33566665 599


Q ss_pred             EEEEECCCCee------eE--EEeccC-----CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883          258 IYVYDLEANKL------SL--RILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE  324 (498)
Q Consensus       258 i~vwd~~~~~~------~~--~~~~~~-----~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  324 (498)
                      |+-|..+....      +.  ....|.     ..|+++-.-|..+. ++.++.|+.++-||++    .++....+++|++
T Consensus        83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE----~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLE----DGRIQREYRGHTD  157 (325)
T ss_pred             EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEec----CCEEEEEEcCCcc
Confidence            99987654221      11  111222     46788888644444 5555589999999998    9999999999999


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883          325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL  404 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (498)
                      .|.++.-......+++|+.||++++||.++.+.....                               ..++.....+.-
T Consensus       158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i-------------------------------e~yk~~~~lRp~  206 (325)
T KOG0649|consen  158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI-------------------------------EPYKNPNLLRPD  206 (325)
T ss_pred             eeeeeeecccCcceeecCCCccEEEEeccccceeEEe-------------------------------ccccChhhcCcc
Confidence            9999998666667999999999999999985433221                               111111111100


Q ss_pred             EEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          405 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       405 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                       -..|-.+...+..+|++|+. -.+.+|.+++.++...+. -..++..+.|.  ...+++++..+.|.-|.+.+.-
T Consensus       207 -~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl  277 (325)
T KOG0649|consen  207 -WGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVL  277 (325)
T ss_pred             -cCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee--cceEEEeccccceeeeeeccEE
Confidence             00011122236678887764 459999999999888775 45678888994  4568888877788888876543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=4e-16  Score=146.36  Aligned_cols=252  Identities=15%  Similarity=0.157  Sum_probs=159.2

Q ss_pred             CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCC
Q 010883          131 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~  208 (498)
                      .+....++++||+++|++++ .++.|.+|+++....+..... .........++|+|++++|++++. ++.|.+|++.+.
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            34567889999999987765 478899999973212211111 112224678999999999988775 789999999642


Q ss_pred             c-eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEE-----Ee-ccCCCee
Q 010883          209 T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLR-----IL-AHTSDVN  280 (498)
Q Consensus       209 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~-----~~-~~~~~v~  280 (498)
                      . ........              .+...+.+++++|+|+++++++ .++.|.+||+.+...+..     .. .......
T Consensus       113 g~~~~~~~~~--------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~  178 (330)
T PRK11028        113 GIPVAPIQII--------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR  178 (330)
T ss_pred             CCCCCceeec--------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence            2 21111100              0111466788999999886655 568999999976432211     11 1234467


Q ss_pred             EEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCCceeEEeccc------cccEEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 010883          281 TVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK-DQAIKLWDI  352 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~  352 (498)
                      .++|+ +++++++++.. ++.|.+|++.......+.+..+..+      ......+.++|++++++++.. ++.|.+|++
T Consensus       179 ~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        179 HMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            89997 78888877776 8999999996211111223332211      112346889999999988854 688999998


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEE
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYV  431 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~i  431 (498)
                      .....                                 . ..+.++...   ........++|||++|++++. +++|.+
T Consensus       258 ~~~~~---------------------------------~-~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v  300 (330)
T PRK11028        258 SEDGS---------------------------------V-LSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISV  300 (330)
T ss_pred             eCCCC---------------------------------e-EEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEE
Confidence            65211                                 1 011111000   011223467889999998876 889999


Q ss_pred             EECC
Q 010883          432 YDLV  435 (498)
Q Consensus       432 wd~~  435 (498)
                      |++.
T Consensus       301 ~~~~  304 (330)
T PRK11028        301 YEID  304 (330)
T ss_pred             EEEc
Confidence            9874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=5.8e-17  Score=142.28  Aligned_cols=273  Identities=15%  Similarity=0.185  Sum_probs=186.6

Q ss_pred             eeEEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883          177 WTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  255 (498)
Q Consensus       177 ~~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d  255 (498)
                      .+|..+.|.++.. .|++|+.|..|++|.+..+....--...       ........|...|+++.|+|+|..|++|+.+
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V-------~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~   86 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV-------EYLSSLSRHTRAVNVVRFSPDGELLASGGDG   86 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE-------EEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence            3899999999776 9999999999999998765432210000       0112334688899999999999999999999


Q ss_pred             CeEEEEECC--------C--------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe
Q 010883          256 DCIYVYDLE--------A--------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL  319 (498)
Q Consensus       256 g~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  319 (498)
                      |.|.+|-..        +        ......+.+|...|..++|+ ++++++++++.|..+++||+.    .+.....+
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~----~G~l~~~~  161 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH----AGQLLAIL  161 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec----cceeEeec
Confidence            999999765        2        12334566899999999998 889999999999999999998    89999999


Q ss_pred             ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc
Q 010883          320 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS  399 (498)
Q Consensus       320 ~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (498)
                      ..|...+..++|.|-++++++-+.|...+.+.+...........         ..+    .........+...+.+..  
T Consensus       162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~---------~~m----~~~~~~~~e~~s~rLfhD--  226 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL---------DIM----PAKAFNEREGKSTRLFHD--  226 (434)
T ss_pred             cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee---------eEe----eecccCCCCcceeeeeec--
Confidence            99999999999999999999999998777777665322111100         000    000000001112222211  


Q ss_pred             eeEEEEEEEeccccCCCCcEEEEEec----CC-----eEEEEECCC-CcEEEEeccCCCCeeeeEEcC------------
Q 010883          400 VLRTLIRCHFSPVYSTGQKYIYTGSH----DS-----CVYVYDLVS-GEQVAALKYHTSPVRDCSWHP------------  457 (498)
Q Consensus       400 ~~~~~~~~~~~~~~s~~~~~l~~g~~----dg-----~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp------------  457 (498)
                        .+...+.+.++|+|||.+|++...    .+     ..++|+-.. .++...+..-..++..+.|+|            
T Consensus       227 --eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~  304 (434)
T KOG1009|consen  227 --ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEK  304 (434)
T ss_pred             --CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccc
Confidence              122334456678899999987542    22     345665432 244555655556666666655            


Q ss_pred             ------CCCeEEEEeCCCcEEEecCCCC
Q 010883          458 ------SQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       458 ------~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                            .+-.+|.++ ...|+|||....
T Consensus       305 ~~~~lpyrlvfaiAt-~~svyvydtq~~  331 (434)
T KOG1009|consen  305 FLFVLPYRLVFAIAT-KNSVYVYDTQTL  331 (434)
T ss_pred             cccccccceEEEEee-cceEEEeccccc
Confidence                  222345554 457999997653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=8.1e-19  Score=166.76  Aligned_cols=244  Identities=20%  Similarity=0.275  Sum_probs=189.7

Q ss_pred             cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883          172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  251 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~  251 (498)
                      ..+|...|.|+.|...|.++++|+.|..++||..+++.+.....                ||.+.|+.++.+.++.++++
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r----------------Ghs~ditdlavs~~n~~iaa  249 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR----------------GHSGDITDLAVSSNNTMIAA  249 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC----------------CCccccchhccchhhhhhhh
Confidence            34788899999999999999999999999999998887654433                78999999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEE
Q 010883          252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFID  330 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~  330 (498)
                      ++.|..|++|-+..+.++..+.+|++.|++++|+|-     .+.+.||++++||.+-.. .......+. ....-+.++.
T Consensus       250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~~  323 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSIL  323 (1113)
T ss_pred             cccCceEEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccc-cccCCCCCCcccccceeeee
Confidence            999999999999999999999999999999999843     278899999999987110 000000011 1224566777


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      |-.++.-+++++.|+.-..|.+........                                             ...|.
T Consensus       324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~---------------------------------------------~lif~  358 (1113)
T KOG0644|consen  324 FENNGDRFLTGSRDGEARNHEFEQLAWRSN---------------------------------------------LLIFV  358 (1113)
T ss_pred             ccccccccccccCCcccccchhhHhhhhcc---------------------------------------------ceEEE
Confidence            878888899999999988887754211000                                             00000


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCCC
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ..-+.-..+.+++-.+-.+.+|++.+|.+++.+.+|...+..+.++|-.+ ...+++.||...|||+..+...
T Consensus       359 t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi  431 (1113)
T KOG0644|consen  359 TRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI  431 (1113)
T ss_pred             eccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence            00011124666777788899999999999999999999999999999877 5568899999999999877544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.4e-16  Score=143.33  Aligned_cols=293  Identities=18%  Similarity=0.248  Sum_probs=201.0

Q ss_pred             CCCCceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883          129 QTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      .|...-+.+..+|||+|+. +|..--.|++||+.+-..-..   .+-....|.-.-++.|-..++.-..|.+|.+-.-. 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE---RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE---RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee---ecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence            4677788999999999755 566778999999986421111   11112234444455555556666667777654322 


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      |.. ....++.                 .-.+++++.-..-|++++....|+-++++.|..+..+....+.++++..+ +
T Consensus       125 G~h-y~~RIP~-----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~  185 (703)
T KOG2321|consen  125 GRH-YRTRIPK-----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN-E  185 (703)
T ss_pred             Cee-eeeecCc-----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-C
Confidence            211 1111111                 23456666544446666666789999999999988888788999999998 6


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCce--eEEeccccc-----cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVLMGHLE-----GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS  360 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~-----~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  360 (498)
                      ...+|++|+.+|.|..||.++....+..  ......|.+     .|+++.|+.+|-.+++|..+|.+.|||++....   
T Consensus       186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p---  262 (703)
T KOG2321|consen  186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP---  262 (703)
T ss_pred             ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---
Confidence            7789999999999999999833211111  111222333     399999999999999999999999999998432   


Q ss_pred             cccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE
Q 010883          361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV  440 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~  440 (498)
                                                      .....|.....+....|...  .+++.|++. ....++|||-.+|+..
T Consensus       263 --------------------------------l~~kdh~~e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  263 --------------------------------LLVKDHGYELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDECTGKPM  307 (703)
T ss_pred             --------------------------------eeecccCCccceeeeccccc--CCCceEEec-chHHhhhcccccCCce
Confidence                                            22233443344555555544  234445444 4567999999999999


Q ss_pred             EEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          441 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       441 ~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      ..+.. ...++++++-|++-+++++-.++.+..|=++.-+.++
T Consensus       308 asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP  349 (703)
T KOG2321|consen  308 ASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP  349 (703)
T ss_pred             eeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence            88874 4459999999999999999999999888887665543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=5.4e-17  Score=147.27  Aligned_cols=265  Identities=14%  Similarity=0.193  Sum_probs=178.6

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-------CCCeEEEEECCCeEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-------DQRHLVYASMSPIVH  201 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------~~~~l~~~s~d~~i~  201 (498)
                      .|...|.|+.|+.+...+.++.++-.+.-|++.+. .......+...  -.+.+-.-|       ....++.++.||.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~   88 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRFV   88 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCccc--CCccccccccccCCCCCcceEEEEcCCceEE
Confidence            45666789999988887777755544444555443 22111111111  011111111       224788889999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      |.+-. ++......                .|.+.+.+-.|+|||.-|++++.||.|++|.- +|-+..++.....+|.|
T Consensus        89 il~k~-~rVE~sv~----------------AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c  150 (737)
T KOG1524|consen   89 ILNKS-ARVERSIS----------------AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRC  150 (737)
T ss_pred             Eeccc-chhhhhhh----------------hhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEE
Confidence            88743 33222211                47779999999999999999999999999984 45444455567789999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      ++|.|..++.+++.+  +.+.+=.+.    ....+..+..|.+-|.++.|++..+.+++|+.|-..++||-..       
T Consensus       151 ~~W~p~S~~vl~c~g--~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-------  217 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQG--GHISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-------  217 (737)
T ss_pred             EEECCCCCceEEecC--CeEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-------
Confidence            999866666766655  455555554    4556667889999999999999999999999999999999754       


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                  +.+..-..|..  .+.    +.+|.|+ +.++.++.+ +++           
T Consensus       218 ----------------------------~~Lf~S~~~ey--~IT----Sva~npd-~~~~v~S~n-t~R-----------  250 (737)
T KOG1524|consen  218 ----------------------------ANLFTSAAEEY--AIT----SVAFNPE-KDYLLWSYN-TAR-----------  250 (737)
T ss_pred             ----------------------------cccccCChhcc--cee----eeeeccc-cceeeeeee-eee-----------
Confidence                                        33333333332  222    3356667 556666543 232           


Q ss_pred             EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883          442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                      --+...+.|..++||+||..++.|...|.+.+=
T Consensus       251 ~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  251 FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            112356789999999999999999999987653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=7.3e-15  Score=127.87  Aligned_cols=285  Identities=16%  Similarity=0.185  Sum_probs=185.6

Q ss_pred             CceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          132 SRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ..|--+-||.  .++|..+.+  +.+++++...+..+.......    +|.++.++.  +.|++.-.+ .|.|||+.+.+
T Consensus        47 ~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mk  117 (391)
T KOG2110|consen   47 VSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRMNR--KRLVVCLEE-SIYIYDIKDMK  117 (391)
T ss_pred             eEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEEcc--ceEEEEEcc-cEEEEecccce
Confidence            3455555654  456655543  459999998886666654333    699999854  455655544 49999999988


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      ....+.....             +...+.++.+++.+.+|+.-+  ..|.|.+||+.+-+.+..+..|.+.+.+++|+ +
T Consensus       118 lLhTI~t~~~-------------n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~  183 (391)
T KOG2110|consen  118 LLHTIETTPP-------------NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-P  183 (391)
T ss_pred             eehhhhccCC-------------CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-C
Confidence            7666554322             222577777777888888744  36899999999999999999999999999998 8


Q ss_pred             CCCEEEEeeCCCe-EEEEcCccccCCCceeEEecccc--ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          288 SGHLIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGHL--EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       288 ~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      +|.+||++|..|+ |||+.+.    .+..+..+..-.  ..|.+++|+|++++|++.+..++|.+|.+............
T Consensus       184 ~G~llATASeKGTVIRVf~v~----~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~  259 (391)
T KOG2110|consen  184 DGTLLATASEKGTVIRVFSVP----EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPT  259 (391)
T ss_pred             CCCEEEEeccCceEEEEEEcC----CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCC
Confidence            9999999999997 6899997    788887776433  35889999999999999999999999999875522221100


Q ss_pred             ccc---ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC--CcE
Q 010883          365 FRS---YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--GEQ  439 (498)
Q Consensus       365 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~  439 (498)
                      ...   ..+......+-|....-.....+.....+......... +.+..  .+...++.+++.||.++.|.+..  |..
T Consensus       260 ~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~-~~l~~--~~~~~~v~vas~dG~~y~y~l~~~~gGe  336 (391)
T KOG2110|consen  260 AGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNI-CSLSS--IQKIPRVLVASYDGHLYSYRLPPKEGGE  336 (391)
T ss_pred             CCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccce-EEeec--cCCCCEEEEEEcCCeEEEEEcCCCCCce
Confidence            000   00000111111111111112222333322222111111 11111  12567899999999999998754  444


Q ss_pred             EEEeccC
Q 010883          440 VAALKYH  446 (498)
Q Consensus       440 ~~~~~~h  446 (498)
                      ...++.|
T Consensus       337 c~lik~h  343 (391)
T KOG2110|consen  337 CALIKRH  343 (391)
T ss_pred             eEEEEee
Confidence            4444434

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.76  E-value=2.6e-16  Score=135.34  Aligned_cols=308  Identities=17%  Similarity=0.272  Sum_probs=198.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEeecCCC------------ceeEEEEEeCCCCC--eEEEE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--IQKDILAKSL------------RWTVTDTSLSPDQR--HLVYA  194 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~--~~~~~~~~~~------------~~~v~~~~~sp~~~--~l~~~  194 (498)
                      ..-|.++.|..+|.+||+|..+|.|.+|.-+....  ..-....+.|            ...|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45689999999999999999999999997543221  1111111122            24789999998764  66677


Q ss_pred             ECCCeEEEEECCCCceec-cccccc-----------------cccCcccc--ccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          195 SMSPIVHIVDVGSGTMES-LANVTE-----------------IHDGLDFS--AADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~-~~~~~~-----------------~~~~~~~~--~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      +.|.+|++|.+....... -...+.                 ....+...  ..-..+|+..|.++.++.|+..++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            889999999986543322 000000                 00000000  011247999999999999999888874 


Q ss_pred             CCeEEEEECCCCeeeEEE---ecc-----CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee----------
Q 010883          255 DDCIYVYDLEANKLSLRI---LAH-----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA----------  316 (498)
Q Consensus       255 dg~i~vwd~~~~~~~~~~---~~~-----~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------  316 (498)
                      |=.|.+|+++--.....+   ..+     ..-|++..|+|...++|+-.+..|+|++-|+|....-....          
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            667999998754332222   222     24588899998889999999999999999998321111111          


Q ss_pred             --EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEE
Q 010883          317 --GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT  394 (498)
Q Consensus       317 --~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (498)
                        .-+..--..|..+.|+++|+++++-.. -+|++||+....                                 +++.+
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~---------------------------------~pv~t  309 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA---------------------------------KPVET  309 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC---------------------------------CcceE
Confidence              111222345788999999999997654 579999996532                                 44444


Q ss_pred             EccCceeEE---------EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE-EEe-------------------c-
Q 010883          395 YKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-AAL-------------------K-  444 (498)
Q Consensus       395 ~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~-------------------~-  444 (498)
                      +..|.....         .+--.|..+|+.++.++++|+..+.+++|++..|... .++                   . 
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~  389 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS  389 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence            444432111         1112234456778899999999999999996654221 000                   0 


Q ss_pred             cC-------------CCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883          445 YH-------------TSPVRDCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       445 ~h-------------~~~v~~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                      +.             ...|...+|+|..+.+|.+..++ ++|+
T Consensus       390 g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  390 GKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             CCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            00             12356678999999888887653 5554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.7e-17  Score=146.56  Aligned_cols=197  Identities=17%  Similarity=0.190  Sum_probs=148.7

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      .+++|+++|..|++|+.||++|||+..+.   ........|...|.++.|+|||+.|++.+.| ..+||++.++......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            89999999999999999999999997764   2333445677799999999999999999999 8999999998543333


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCC---CE--EEEEeCCCeEEEEECCCCee-----eEEEeccCCCeeEEEE
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---RE--LVAGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCF  284 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g---~~--l~~g~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~  284 (498)
                      ....              .......+.|+.|+   .+  ++.....+.|..|++...+.     ..+...-...|++++.
T Consensus       224 t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  224 TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV  289 (398)
T ss_pred             CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence            2111              11246678888877   33  33333456677776654322     1112233457999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCcee-EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      + .++++++.|+.||.|-|++..    .-+.+ ..-..|...|+.+.|+||.+++++.+.|....+..+..
T Consensus       290 S-~dGkf~AlGT~dGsVai~~~~----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  290 S-DDGKFLALGTMDGSVAIYDAK----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             c-CCCcEEEEeccCCcEEEEEec----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            8 899999999999999999986    33333 34457999999999999999999999999988887764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=4.7e-17  Score=147.64  Aligned_cols=208  Identities=15%  Similarity=0.173  Sum_probs=160.3

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL  223 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (498)
                      ..|+.++.||.+.|.+-...  +.+  ....|.+.|.+-.|+|||.-|++++.||.|++|.-...-...+.+.       
T Consensus        76 d~~~i~s~DGkf~il~k~~r--VE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~-------  144 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR--VER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN-------  144 (737)
T ss_pred             ceEEEEcCCceEEEecccch--hhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-------
Confidence            46888889999988875432  232  3357888999999999999999999999999998654221111111       


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEE
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV  303 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~v  303 (498)
                                ..+|.|++|.|+...++.+- .+.+.|=.+.....+.+.+.|.+-|.++.|+ +..+++++|+.|-..++
T Consensus       145 ----------~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKv  212 (737)
T KOG1524|consen  145 ----------EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKI  212 (737)
T ss_pred             ----------CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEe
Confidence                      12799999999888776654 4578888888877788899999999999998 77899999999999999


Q ss_pred             EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccc
Q 010883          304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD  383 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (498)
                      ||.     .+.++..-..|.-+|++++|+|+ ..++.++.+ ++++=..+.                             
T Consensus       213 WD~-----~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~~-----------------------------  256 (737)
T KOG1524|consen  213 WDA-----QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPRV-----------------------------  256 (737)
T ss_pred             ecc-----cCcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCCc-----------------------------
Confidence            997     68888888889999999999999 666666543 344211111                             


Q ss_pred             ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883          384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY  432 (498)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  432 (498)
                                            ...|..+||+||..+++|+..|.+.+=
T Consensus       257 ----------------------GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  257 ----------------------GSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ----------------------cceEEEEEcCCCceeeccccCceEEEe
Confidence                                  234566788899999999998876553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.4e-15  Score=146.67  Aligned_cols=235  Identities=17%  Similarity=0.209  Sum_probs=158.4

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---CCeEEEEECCCCceeccccccccccCccccccC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  229 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (498)
                      ..|.+||.+.... ... .  .+...+...+|+|||+.|+..+.   +..|.+|++.+++...+.....           
T Consensus       179 ~~l~~~d~dg~~~-~~l-t--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~-----------  243 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVV-H--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-----------  243 (429)
T ss_pred             eeEEEEcCCCCCC-EEe-e--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----------
Confidence            3689999876532 222 1  23447899999999999987653   4579999998876544332211           


Q ss_pred             CCCceecEEEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-CCeEEEE-
Q 010883          230 DGGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVW-  304 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~~g~~l~~g-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~vw-  304 (498)
                            .+..++|+|||+.|+.. +.+|  .|++||+.+++.. .+..+...+....|+ |+++.|+..+. ++...+| 
T Consensus       244 ------~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~  315 (429)
T PRK03629        244 ------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYK  315 (429)
T ss_pred             ------CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEE
Confidence                  24467999999988865 3344  5999999887653 444555677889998 77877766654 4555555 


Q ss_pred             -cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883          305 -DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ  380 (498)
Q Consensus       305 -d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (498)
                       |+.    .+ ....+..+........|+|||++|+..+.+   ..|.+||+.+..                        
T Consensus       316 ~d~~----~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~------------------------  366 (429)
T PRK03629        316 VNIN----GG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------------------------  366 (429)
T ss_pred             EECC----CC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC------------------------
Confidence             553    22 233333344455678899999999876643   358888887632                        


Q ss_pred             cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe---EEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883          381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC---VYVYDLVSGEQVAALKYHTSPVRDCSWHP  457 (498)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~---i~iwd~~~~~~~~~~~~h~~~v~~l~~sp  457 (498)
                                 ...+....       ....|.|+|||++|+.++.++.   ++++++ +|.....+..|.+.+...+|+|
T Consensus       367 -----------~~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        367 -----------VQVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             -----------eEEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence                       11111110       1135688999999999988764   677787 5666677878888999999997


Q ss_pred             C
Q 010883          458 S  458 (498)
Q Consensus       458 ~  458 (498)
                      -
T Consensus       428 ~  428 (429)
T PRK03629        428 Y  428 (429)
T ss_pred             C
Confidence            3

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.9e-15  Score=143.40  Aligned_cols=309  Identities=15%  Similarity=0.116  Sum_probs=207.6

Q ss_pred             ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      +.+|.. =.++.+++.|.+.+..-.+ .+.+|+..++. ..........|...+++.+++|.++++|+|..||.|.+|.-
T Consensus       157 ~~~~~~-~~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d  234 (792)
T KOG1963|consen  157 LKEHQE-PKSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD  234 (792)
T ss_pred             hhhhcC-CccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence            334433 4678899999887777544 68899987743 12222233467777899999999999999999999999985


Q ss_pred             CCC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          206 GSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       206 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      -.. .........             .=|..+|.+++|+++|.+|++|+..+.+.+|.+++++ ..-++.-.++|..+.+
T Consensus       235 ~~~~~~~~t~t~l-------------HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~v  300 (792)
T KOG1963|consen  235 FGSSDDSETCTLL-------------HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVV  300 (792)
T ss_pred             cccccccccceEE-------------EecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEE
Confidence            431 111111111             1255589999999999999999999999999999998 4556677889999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE--------eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      + +++.+.+....|+.|.+......... ..+..        -....+-.+.++++|..+.++-.+..|.|.+||+-+..
T Consensus       301 S-~ds~~~sl~~~DNqI~li~~~dl~~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~  378 (792)
T KOG1963|consen  301 S-PDSDLYSLVLEDNQIHLIKASDLEIK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS  378 (792)
T ss_pred             c-CCCCeEEEEecCceEEEEeccchhhh-hhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence            8 88888888899999999876422111 01111        11123446788899988889999999999999998754


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--------C--
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------D--  426 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------d--  426 (498)
                      .....                             .+.....+.............+.+..|.++++.-.        |  
T Consensus       379 ~i~~~-----------------------------~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e  429 (792)
T KOG1963|consen  379 TIYKL-----------------------------QVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE  429 (792)
T ss_pred             eeeeE-----------------------------EEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence            33221                             01111111111122222333345557888888632        3  


Q ss_pred             CeEEEEECCCCcEEE----Ee-ccCCCCeeeeEEcCC-CC-eEEEEeCCCcEEEecCCCCCCC
Q 010883          427 SCVYVYDLVSGEQVA----AL-KYHTSPVRDCSWHPS-QP-MLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 g~i~iwd~~~~~~~~----~~-~~h~~~v~~l~~sp~-~~-~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      -.+++|-......-.    .+ ..|...+...++.+. .. ..++++.||.++||-+.+....
T Consensus       430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~  492 (792)
T KOG1963|consen  430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI  492 (792)
T ss_pred             EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence            357888765543322    22 368776666665543 33 7999999999999999666544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.75  E-value=4.2e-16  Score=141.66  Aligned_cols=278  Identities=17%  Similarity=0.198  Sum_probs=180.7

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCC-CceeEEEEEe-----CCCCCeEEEEECCCeEEEEECC
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSL-----SPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~~~~-----sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      .+....++-.|.+|+..- ...+.+|+...+..+...+.... .....+|-+|     .|.+--|+++-.-|.|.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            455566666777877663 34688998875422222111110 0112333334     4567778888888999998876


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG  285 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  285 (498)
                      ..+...++......            ....|+|+.|-|. ...++++-.+|.+++||.+          +....+...|.
T Consensus       204 ~~~~sklfne~r~i------------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~  261 (636)
T KOG2394|consen  204 NFEVSKLFNEERLI------------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQ  261 (636)
T ss_pred             hhHHHHhhhhcccc------------cccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCccc
Confidence            64333323222111            1237999999994 4467777889999999972          11112222221


Q ss_pred             -CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          286 -DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       286 -~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                       .+++..+....       |--.   ....++..+.--.+.|+.++|+|||++||+.+.||.++|||+.++.....    
T Consensus       262 ~~k~~~~f~i~t-------~ksk---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~----  327 (636)
T KOG2394|consen  262 ALKDGDQFAILT-------SKSK---KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV----  327 (636)
T ss_pred             ccCCCCeeEEee-------eecc---ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH----
Confidence             13444443322       1111   02245555555567899999999999999999999999999987432211    


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  444 (498)
                                                    +  ++....+.    +.+|||||+||++|++|--|.||.+..++.++.-+
T Consensus       328 ------------------------------m--kSYFGGLL----CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq  371 (636)
T KOG2394|consen  328 ------------------------------M--KSYFGGLL----CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ  371 (636)
T ss_pred             ------------------------------H--HhhccceE----EEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence                                          1  11112233    33677799999999999999999999999999999


Q ss_pred             cCCCCeeeeEEcCC-----------------------------------C-------------CeEEEEeCCCcEEEecC
Q 010883          445 YHTSPVRDCSWHPS-----------------------------------Q-------------PMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       445 ~h~~~v~~l~~sp~-----------------------------------~-------------~~l~s~~~Dg~i~iw~~  476 (498)
                      +|.+.|..++|.|-                                   +             -.|.+.+.|-.+.+||+
T Consensus       372 GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDl  451 (636)
T KOG2394|consen  372 GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDL  451 (636)
T ss_pred             ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEec
Confidence            99999999999830                                   1             14678889999999999


Q ss_pred             CCCCCCC
Q 010883          477 PGNGEAA  483 (498)
Q Consensus       477 ~~~~~~~  483 (498)
                      ......+
T Consensus       452 teD~L~~  458 (636)
T KOG2394|consen  452 TEDVLVP  458 (636)
T ss_pred             chhhccc
Confidence            8765444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.1e-17  Score=149.25  Aligned_cols=247  Identities=18%  Similarity=0.207  Sum_probs=166.4

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE  248 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~  248 (498)
                      ...+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+......               .||...|.++.|-|  +.+.
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------TgHtaNIFsvKFvP~tnnri  109 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------TGHTANIFSVKFVPYTNNRI  109 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------cccccceeEEeeeccCCCeE
Confidence            456899999999999999999999999999999987655443332               27888999999999  5678


Q ss_pred             EEEEeCCCeEEEEECCCC----------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC---C--
Q 010883          249 LVAGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---G--  313 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~--  313 (498)
                      +++|..|..|+++|+...          .....+..|...|..++-.|...+.+.+++.||+|+-+|++....-   .  
T Consensus       110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~  189 (758)
T KOG1310|consen  110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC  189 (758)
T ss_pred             EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence            999999999999999852          2344556799999999998666799999999999999999843210   0  


Q ss_pred             -ceeEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCcccc-ccCcccccccceeecCCcCcccccCCCCc
Q 010883          314 -KPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASC-NLGFRSYEWDYRWMDYPPQARDLKHPCDQ  390 (498)
Q Consensus       314 -~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (498)
                       ..+..+....-...++..+|. ..+|++|+.|-..++||.+........ .........+.+++.+       ..  ..
T Consensus       190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y-------f~--p~  260 (758)
T KOG1310|consen  190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY-------FS--PG  260 (758)
T ss_pred             cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe-------ec--Cc
Confidence             011111222234678889985 568899999999999997653221111 0000000001000000       00  00


Q ss_pred             eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                      .+....+  .......+....+|+|+|.-|++.-..-.|+++|+..++....+
T Consensus       261 hlkn~~g--n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  261 HLKNSQG--NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cccCccc--ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            0111111  11223344555688999988888777778999999887765444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=1.2e-17  Score=148.97  Aligned_cols=272  Identities=19%  Similarity=0.256  Sum_probs=206.7

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      ...-+.+.++.+|+.|+.|+.-|.|-.+|..++.....+.    ....|.++.|-.+.+++|++- ...+.|||-..-+.
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl  203 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL  203 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEE
Confidence            4456789999999999999999999999999885554433    334799999999999888764 57899999776555


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                      ..+....                  .|..+.|.|..-+|++++..|.+..-|+.+|+.+..+..-.+.+..++-+ |-+.
T Consensus       204 HClk~~~------------------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~Na  264 (545)
T KOG1272|consen  204 HCLKRHI------------------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNA  264 (545)
T ss_pred             eehhhcC------------------chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccc
Confidence            4444322                  68889999998889999999999999999999999998888899999998 6677


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      .+-+|...|+|.+|...    ...++..+..|.++|.+|++.++|+|++|.+.|..++|||++.....            
T Consensus       265 Vih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql------------  328 (545)
T KOG1272|consen  265 VIHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL------------  328 (545)
T ss_pred             eEEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc------------
Confidence            89999999999999997    78888899999999999999999999999999999999999985421            


Q ss_pred             cceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE-CCCC--cEEEEeccC
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD-LVSG--EQVAALKYH  446 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd-~~~~--~~~~~~~~h  446 (498)
                                            .++.. +..        ...++|  .+-+++.+....|.||. .-.+  ..-..+-.|
T Consensus       329 ----------------------~t~~tp~~a--------~~ls~S--qkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H  376 (545)
T KOG1272|consen  329 ----------------------HTYRTPHPA--------SNLSLS--QKGLLALSYGDHVQIWKDALKGSGHGETPYMNH  376 (545)
T ss_pred             ----------------------ceeecCCCc--------cccccc--cccceeeecCCeeeeehhhhcCCCCCCcchhhh
Confidence                                  11111 110        111333  23344445556799995 2221  111112123


Q ss_pred             --CCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883          447 --TSPVRDCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       447 --~~~v~~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                        .++|.++.|+|-...|-.|-.-|.-.|.
T Consensus       377 ~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  377 RCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             ccCcccccceeccHHHeeeccccCCceeEe
Confidence              4689999999988777777665544443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=1.9e-16  Score=134.98  Aligned_cols=246  Identities=15%  Similarity=0.140  Sum_probs=173.2

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      .+|+|.+|++|...+|++.....|.||.....+.-.....             ...|...|+.+.|+|..+.|++++.|.
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~ht-------------ls~Hd~~vtgvdWap~snrIvtcs~dr   77 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHT-------------LSEHDKIVTGVDWAPKSNRIVTCSHDR   77 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceecee-------------hhhhCcceeEEeecCCCCceeEccCCC
Confidence            4899999999999999999999999999887763222211             124667899999999999999999999


Q ss_pred             eEEEEEC-CCC--eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          257 CIYVYDL-EAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       257 ~i~vwd~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      .-+||.. ..+  ++...+..+....+++.|+ |.++.|++|+....|.||-.+..+.-......-..+...|++++|+|
T Consensus        78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp  156 (361)
T KOG1523|consen   78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP  156 (361)
T ss_pred             CccccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence            9999998 333  4556677899999999998 78899999999999999988633222222233445678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      ++-+|++|+.|+.++++..--.....    ......|+            -..+.++.+..+....      .......|
T Consensus       157 nnVLlaaGs~D~k~rVfSayIK~Vde----kpap~pWg------------sk~PFG~lm~E~~~~g------gwvh~v~f  214 (361)
T KOG1523|consen  157 NNVLLAAGSTDGKCRVFSAYIKGVDE----KPAPTPWG------------SKMPFGQLMSEASSSG------GWVHGVLF  214 (361)
T ss_pred             CcceecccccCcceeEEEEeeecccc----CCCCCCCc------------cCCcHHHHHHhhccCC------CceeeeEe
Confidence            99999999999999998642110000    00001111            0111123333332111      12233467


Q ss_pred             CCCCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEEcCC
Q 010883          414 STGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       414 s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~  458 (498)
                      +|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+
T Consensus       215 s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  215 SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence            7899999999999999999987664 34444333367777777543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.73  E-value=2.5e-14  Score=133.83  Aligned_cols=309  Identities=16%  Similarity=0.131  Sum_probs=185.2

Q ss_pred             CEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883          144 SLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       144 ~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      ++++ +-..++.|.|.|..+.+.+........   .-..+.|+|||+++.+++.||.|.++|+.+.+.........    
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----   78 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----   78 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence            4554 455689999999999877766543322   23457799999999999999999999999998766654332    


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEecc-------CCCeeEEEEeCCCCCEEEE
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTVCFGDESGHLIYS  294 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s  294 (498)
                                   ...++++++||++++++. ..+.+.++|.++.+.+..+...       ...+..+..+|....++++
T Consensus        79 -------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~  145 (369)
T PF02239_consen   79 -------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN  145 (369)
T ss_dssp             -------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred             -------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence                         577899999999998776 5889999999999998887632       3456778777444445555


Q ss_pred             eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccCccccc----
Q 010883          295 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYE----  369 (498)
Q Consensus       295 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~----  369 (498)
                      --..+.|.+.|....   ..................|+|++++++++ ..+..|-++|..+.........+.....    
T Consensus       146 lkd~~~I~vVdy~d~---~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~  222 (369)
T PF02239_consen  146 LKDTGEIWVVDYSDP---KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGA  222 (369)
T ss_dssp             ETTTTEEEEEETTTS---SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred             EccCCeEEEEEeccc---cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccc
Confidence            556688888887622   12222233334567788999999987664 4566899999887655443322221111    


Q ss_pred             ----------ccceeec------CCcCccc-ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE----ecCCe
Q 010883          370 ----------WDYRWMD------YPPQARD-LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG----SHDSC  428 (498)
Q Consensus       370 ----------~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----~~dg~  428 (498)
                                |......      ...+... ......+.+..+......       .....+|+++++.+.    ...++
T Consensus       223 ~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-------lFi~thP~s~~vwvd~~~~~~~~~  295 (369)
T PF02239_consen  223 NFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-------LFIKTHPDSRYVWVDTFLNPDADT  295 (369)
T ss_dssp             EEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---------EE--TT-SEEEEE-TT-SSHT-
T ss_pred             cccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-------ceeecCCCCccEEeeccCCCCCce
Confidence                      1111000      0000000 111223344444433211       111347799999998    44589


Q ss_pred             EEEEECCCCcEEEEeccC-CCCeeeeEEcCCCCeEEEEeCCC--cEEEecCCCCCCC
Q 010883          429 VYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEA  482 (498)
Q Consensus       429 i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~~~Dg--~i~iw~~~~~~~~  482 (498)
                      |.++|..+.+.+..+... ...+..+.|+++|+.+..+.+++  .|.+||..+.++.
T Consensus       296 v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  296 VQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence            999999999888887632 23589999999999666555443  6999998876543

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.7e-15  Score=145.08  Aligned_cols=214  Identities=17%  Similarity=0.141  Sum_probs=145.7

Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEe
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRIL  273 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~  273 (498)
                      +..|.+||........+.                 .|...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +.
T Consensus       183 ~~~i~i~d~dg~~~~~lt-----------------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~  244 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVN-----------------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA  244 (429)
T ss_pred             eEEEEEECCCCCCceEec-----------------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee
Confidence            368999998765432221                 233468999999999999987653   469999998876422 22


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 010883          274 AHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWD  351 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd  351 (498)
                      ...+....++|+ |+++.|+.+ +.+|.+.||.+..   .......+..+...+....|+|||+.|+..+ .++...||+
T Consensus       245 ~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~  320 (429)
T PRK01742        245 SFRGHNGAPAFS-PDGSRLAFASSKDGVLNIYVMGA---NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR  320 (429)
T ss_pred             cCCCccCceeEC-CCCCEEEEEEecCCcEEEEEEEC---CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence            233344578998 778777665 4688766664321   2233455666777788999999999877655 578888888


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEE
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV  431 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  431 (498)
                      +....                                 .....+ .+..        +.+.|+|||++|+.++.++ +.+
T Consensus       321 ~~~~~---------------------------------~~~~~l-~~~~--------~~~~~SpDG~~ia~~~~~~-i~~  357 (429)
T PRK01742        321 MSASG---------------------------------GGASLV-GGRG--------YSAQISADGKTLVMINGDN-VVK  357 (429)
T ss_pred             EECCC---------------------------------CCeEEe-cCCC--------CCccCCCCCCEEEEEcCCC-EEE
Confidence            75421                                 111111 1110        2457899999999887765 666


Q ss_pred             EECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          432 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       432 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ||+.+++.......+  ....++|+|+|++|+.++.+|.+.+|.+.
T Consensus       358 ~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        358 QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            999988765333322  34678899999999999999988888763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.7e-14  Score=125.15  Aligned_cols=318  Identities=12%  Similarity=0.102  Sum_probs=191.4

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCc
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ...+..++|++.-..+|++..|-.|++|+-... ....  .....+..|++++|-|.+ +.|++|+..| |.+|.....-
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~--Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK--LKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce--ecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence            455778899997778899999999999997763 2221  223334479999999954 5677777655 8899875321


Q ss_pred             -eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          210 -MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       210 -~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                       ..........+   ........|| .+|++++|.+||..+++++. +..|.|||..++..+.-.....+.++-+.|+ |
T Consensus       174 n~~r~~~~~s~~---~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-P  248 (445)
T KOG2139|consen  174 NANRNIRMMSTH---HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-P  248 (445)
T ss_pred             cccccccccccc---chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-C
Confidence             11111111111   1111122345 48999999999999999875 5789999999988765554566788999998 8


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      ++.+|++++-|+..++|....   ..... ......+.|....|+|+|++|+.... |.-++|.+...........    
T Consensus       249 dgd~lfaAt~davfrlw~e~q---~wt~e-rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~----  319 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQENQ---SWTKE-RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR----  319 (445)
T ss_pred             CCCEEEEecccceeeeehhcc---cceec-ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC----
Confidence            899999999999999996541   22222 22223458999999999998765543 3455666554322211100    


Q ss_pred             ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC--------eEEEEECCCCcE
Q 010883          368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--------CVYVYDLVSGEQ  439 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--------~i~iwd~~~~~~  439 (498)
                       ..+........+...+....++.           ..-...-+++|.|.|.+||+.-..+        .|.+||....-.
T Consensus       320 -~~~~k~~lliaDL~e~ti~ag~~-----------l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~  387 (445)
T KOG2139|consen  320 -PQSIKRVLLIADLQEVTICAGQR-----------LCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP  387 (445)
T ss_pred             -cccceeeeeeccchhhhhhcCcc-----------cccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence             00011111111111111111100           0011122346778999999876543        367788655433


Q ss_pred             EEEec-c--CCCCeeeeEEcC---CCCeEEEEeCCCcEEEecCCC
Q 010883          440 VAALK-Y--HTSPVRDCSWHP---SQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       440 ~~~~~-~--h~~~v~~l~~sp---~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      +.... +  .......++|+|   ++++|..+=..|.+.-|.+.-
T Consensus       388 vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  388 VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence            32221 1  111234566666   455777776778888877643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.5e-15  Score=146.99  Aligned_cols=251  Identities=16%  Similarity=0.220  Sum_probs=175.2

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCC
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSD  255 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~d  255 (498)
                      +...+.|+|-...++++...-.|+|||.+.++....+......             ...|+.+.+..  |..++++|+.|
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-------------~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP-------------DTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC-------------CCccceeeeecccchhheeeeccC
Confidence            4566788898888999887789999999998875554433322             12688888876  55689999999


Q ss_pred             CeEEEEECCCC-----eeeEEEec-------cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cc
Q 010883          256 DCIYVYDLEAN-----KLSLRILA-------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GH  322 (498)
Q Consensus       256 g~i~vwd~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~  322 (498)
                      |.|+||+-...     +.+....+       ..+.-.-+.|....| +|++++.-..|+|||..    ....+..+. +.
T Consensus      1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~----~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAH----KEQVVADIPYGS 1207 (1387)
T ss_pred             ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecc----cceeEeecccCC
Confidence            99999964332     23332221       111224456764444 45555558899999997    444444443 33


Q ss_pred             cccEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883          323 LEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL  401 (498)
Q Consensus       323 ~~~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (498)
                      ...|+++.-+ +.|+.|++|..||.|++||.+....                               +..+..++.|...
T Consensus      1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------------------------------ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-------------------------------DSLVCVYREHNDV 1256 (1387)
T ss_pred             CccceeecccccCCceEEEeecCCceEEeecccCCc-------------------------------cccceeecccCCc
Confidence            4456776654 3479999999999999999987432                               2456777777766


Q ss_pred             EEEEEEEeccccCCCCc-EEEEEecCCeEEEEECCCCcEEEE--eccCC--C-CeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          402 RTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVAA--LKYHT--S-PVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~--~-~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      ..++...+..    +|- -|++|+.||.|++||++.......  +..|.  + ..+++..+++.+.+|+|+. +.|+||+
T Consensus      1257 ~~Iv~~slq~----~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1257 EPIVHLSLQR----QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred             ccceeEEeec----CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence            5555554443    333 599999999999999988533222  22333  3 5999999999999999998 9999999


Q ss_pred             CCCCCCC
Q 010883          476 FPGNGEA  482 (498)
Q Consensus       476 ~~~~~~~  482 (498)
                      +.+....
T Consensus      1332 ~~G~~l~ 1338 (1387)
T KOG1517|consen 1332 LSGEQLN 1338 (1387)
T ss_pred             cChhhhc
Confidence            9876544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.4e-15  Score=130.91  Aligned_cols=195  Identities=17%  Similarity=0.282  Sum_probs=148.7

Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-c
Q 010883          247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-E  324 (498)
Q Consensus       247 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~  324 (498)
                      ..+|++..+|.|++||..+++.+..+.++...++.+.|... .++.+.+++.||+|++||+|...  ......+..+. .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA--ESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch--hhhheeccCCCCC
Confidence            46889999999999999999999999999999999999743 67899999999999999999442  23334444554 4


Q ss_pred             cEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE-ccCc
Q 010883          325 GITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHS  399 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  399 (498)
                      +..+++.+-+++.+++|..    +-.|.+||+|..+.                                 .+..+ ..|.
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq---------------------------------~l~~~~eSH~  165 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ---------------------------------LLRQLNESHN  165 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccc---------------------------------hhhhhhhhcc
Confidence            6677777667788887753    56799999998543                                 12222 3344


Q ss_pred             eeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE----EEEeccCCCCeeeeEEcCCC-CeEEEEeCCCcEEEe
Q 010883          400 VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRW  474 (498)
Q Consensus       400 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~~-~~l~s~~~Dg~i~iw  474 (498)
                      ..  +....|.|.   +.++|++|+.||.|.|||+.....    +.++ .|...|..+.|..++ +.|.+-+...+..+|
T Consensus       166 DD--VT~lrFHP~---~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~  239 (376)
T KOG1188|consen  166 DD--VTQLRFHPS---DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIY  239 (376)
T ss_pred             Cc--ceeEEecCC---CCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEE
Confidence            33  334446665   789999999999999999876432    2333 477889999999877 357788889999999


Q ss_pred             cCCCCCCC
Q 010883          475 EFPGNGEA  482 (498)
Q Consensus       475 ~~~~~~~~  482 (498)
                      ++..+.+.
T Consensus       240 ele~~~~~  247 (376)
T KOG1188|consen  240 ELEDGSEE  247 (376)
T ss_pred             EccCCChh
Confidence            99988754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.1e-14  Score=139.25  Aligned_cols=234  Identities=21%  Similarity=0.206  Sum_probs=154.2

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  229 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (498)
                      ..|.+||..... ...+   ..+...+.+.+|+|||+.|++.+.+   ..|.+||+.+++...+....            
T Consensus       184 ~~l~i~D~~g~~-~~~l---t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------  247 (433)
T PRK04922        184 YALQVADSDGYN-PQTI---LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------  247 (433)
T ss_pred             EEEEEECCCCCC-ceEe---ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC------------
Confidence            468999986542 2222   2334478999999999999988743   47999999887654332211            


Q ss_pred             CCCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCe--EEE
Q 010883          230 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKV  303 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~~g~~l~~-g~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~--i~v  303 (498)
                           +...+.+|+|||+.|+. .+.+|  .|++||+.+++. ..+..+.......+|+ ++++.|+.++ .+|.  |++
T Consensus       248 -----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~  320 (433)
T PRK04922        248 -----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYR  320 (433)
T ss_pred             -----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEE
Confidence                 13446899999997764 44444  699999988775 4455665566788998 6777776665 4455  555


Q ss_pred             EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883          304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ  380 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (498)
                      +|+.    .+. ...+..+......++|+|||++|+..+.++   .|.+||+.+...                       
T Consensus       321 ~dl~----~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-----------------------  372 (433)
T PRK04922        321 VAAS----GGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-----------------------  372 (433)
T ss_pred             EECC----CCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-----------------------
Confidence            6654    222 222322333455789999999998765443   589999876321                       


Q ss_pred             cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883          381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP  457 (498)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp  457 (498)
                                  ..+....       ....+.|+|||++|+..+.+   +.|+++++. +.....+..+.+.+...+|+|
T Consensus       373 ------------~~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        373 ------------RTLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ------------EECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence                        1111110       01245788999988877663   468888884 455666666677888889987

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.2e-14  Score=140.35  Aligned_cols=237  Identities=21%  Similarity=0.240  Sum_probs=152.6

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  229 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (498)
                      ..|.++|.+.. .....   ..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...+....            
T Consensus       176 ~~L~~~D~dG~-~~~~l---~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------------  239 (427)
T PRK02889        176 YQLQISDADGQ-NAQSA---LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------------  239 (427)
T ss_pred             cEEEEECCCCC-CceEe---ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------------
Confidence            45777777543 22222   1334578899999999999987753   46999999988654332211            


Q ss_pred             CCCceecEEEEEEcCCCCEEEE-EeCCCeEEE--EECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCeEEEEc
Q 010883          230 DGGYSFGIFSLKFSTDGRELVA-GSSDDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWD  305 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd  305 (498)
                           +.+.+.+|+|||+.|+. .+.+|...|  +|+..+. ...+..+........|+ ++++.|+..+ .+|...+|.
T Consensus       240 -----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        240 -----GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             -----CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEE
Confidence                 13567899999998875 566766444  4555544 45555566666778998 6777766555 356667776


Q ss_pred             CccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883          306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR  382 (498)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      +...  .+. ...+..+........|+|||++|+..+.++   .|.+||+.+..                          
T Consensus       313 ~~~~--~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~--------------------------  363 (427)
T PRK02889        313 MPAS--GGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ--------------------------  363 (427)
T ss_pred             EECC--CCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC--------------------------
Confidence            5411  222 222222223344678999999998777654   59999987632                          


Q ss_pred             cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883          383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                               ...+....       ....|.|+|||+.|+.++.++   .+++.++ ++.....+..+.+.+...+|+|-
T Consensus       364 ---------~~~lt~~~-------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        364 ---------VTALTDTT-------RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ---------eEEccCCC-------CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence                     11111111       013568899999998887654   4666676 56666677667788889999874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=5.5e-14  Score=136.54  Aligned_cols=234  Identities=18%  Similarity=0.202  Sum_probs=154.6

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---CCeEEEEECCCCceeccccccccccCccccccC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  229 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (498)
                      ..|.++|.+... ....   ..+...+...+|+|||+.|+..+.   +..|.+||+.+++...+..              
T Consensus       182 ~~l~~~d~dg~~-~~~l---t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~--------------  243 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYL---TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN--------------  243 (435)
T ss_pred             eEEEEECCCCCC-cEEE---ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------
Confidence            478889886542 2222   234557999999999999998764   4689999998886543322              


Q ss_pred             CCCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-CC--eEEE
Q 010883          230 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV  303 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~~g~~l~~-g~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~v  303 (498)
                         +.+.+...+|+|||+.|+. .+.++  .|++||+.+++. ..+..+........|+ ++++.|+..+. +|  .|++
T Consensus       244 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~  318 (435)
T PRK05137        244 ---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYV  318 (435)
T ss_pred             ---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEE
Confidence               1224667899999998764 44444  488889988765 4566666667789998 67777776653 33  5777


Q ss_pred             EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883          304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ  380 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (498)
                      +|+.    . .....+..+...+....|+|||+.|+....+   ..|.+||+....                        
T Consensus       319 ~d~~----g-~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~------------------------  369 (435)
T PRK05137        319 MNAD----G-SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG------------------------  369 (435)
T ss_pred             EECC----C-CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc------------------------
Confidence            7874    2 2333443344556778899999999877654   357778865421                        


Q ss_pred             cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC------CeEEEEECCCCcEEEEeccCCCCeeeeE
Q 010883          381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD------SCVYVYDLVSGEQVAALKYHTSPVRDCS  454 (498)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~  454 (498)
                                 ...+....       ....+.|+|||+.|+..+.+      ..++++|+..+.. ..+. ..+.+...+
T Consensus       370 -----------~~~lt~~~-------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~  429 (435)
T PRK05137        370 -----------ERILTSGF-------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPA  429 (435)
T ss_pred             -----------eEeccCCC-------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcc
Confidence                       11111100       12456889999998876543      3688889866554 3444 345577888


Q ss_pred             EcCC
Q 010883          455 WHPS  458 (498)
Q Consensus       455 ~sp~  458 (498)
                      |+|-
T Consensus       430 Wsp~  433 (435)
T PRK05137        430 WSPL  433 (435)
T ss_pred             cCCC
Confidence            8874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=5.3e-14  Score=122.14  Aligned_cols=205  Identities=21%  Similarity=0.185  Sum_probs=138.5

Q ss_pred             CCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEE-----------EEEeecCCCceeEEEEEeCCCCCeEEEEEC-
Q 010883          130 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI-----------QKDILAKSLRWTVTDTSLSPDQRHLVYASM-  196 (498)
Q Consensus       130 h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-  196 (498)
                      ....|+|++|-|.+ +.|+.|+..| |.+|..+.....           .......+| .+|++++|.+||..+++++. 
T Consensus       139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence            45679999999975 6788888765 899987542111           112233455 48999999999999999886 


Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                      |..|.|||..++....+...                ..+.+.-+.|||||.+|++++-|+..++|+........+.....
T Consensus       217 sssi~iWdpdtg~~~pL~~~----------------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs  280 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPK----------------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS  280 (445)
T ss_pred             cceEEEEcCCCCCccccccc----------------CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC
Confidence            56899999999987665521                11268889999999999999999999999665544333344455


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc--CCCc---------eeEEec-----c----ccccEEEEEEcCCCC
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--VKGK---------PAGVLM-----G----HLEGITFIDSRGDGR  336 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~---------~~~~~~-----~----~~~~v~~l~~~~~~~  336 (498)
                      +.|...+|+|....+|++.+..-.  +|.+....  ....         .+..+.     .    -.+.+.+++|.|.|.
T Consensus       281 grvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe  358 (445)
T KOG2139|consen  281 GRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE  358 (445)
T ss_pred             CceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC
Confidence            699999998544445555554433  33332110  0000         011110     1    135688999999999


Q ss_pred             EEEEEeCCC--------cEEEEeCCC
Q 010883          337 YLISNGKDQ--------AIKLWDIRK  354 (498)
Q Consensus       337 ~l~s~~~dg--------~i~iwd~~~  354 (498)
                      +|++.-..+        .|.+||.+.
T Consensus       359 yLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  359 YLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             EEEEEEcCCchhhhhhhhhhhhcccc
Confidence            999876543        366677665

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.3e-12  Score=111.86  Aligned_cols=282  Identities=14%  Similarity=0.182  Sum_probs=182.3

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CC------CeEEEEEC
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS------PIVHIVDV  205 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d------~~i~iwd~  205 (498)
                      ....++|+.|..-+++|..+| .+||+.+--   .+......+.+.+.-+..--..++|+..+ .+      +.|.|||-
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~---ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF---KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCch---hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence            344599999999999998776 899998752   11111111111121122222445565433 22      37999995


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEecc--CCCeeEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAH--TSDVNTV  282 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~--~~~v~~~  282 (498)
                      ...++......                 ..+|.++.+.++  .|++.- .+.|+||... +.+.++.+...  ...+.++
T Consensus        83 ~k~~~i~el~f-----------------~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~  142 (346)
T KOG2111|consen   83 LKERCIIELSF-----------------NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSL  142 (346)
T ss_pred             ccCcEEEEEEe-----------------ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEee
Confidence            44444333332                 237999999866  466554 5679999988 44555555422  3334444


Q ss_pred             EEeCCCCCEEEE-eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCCCccc
Q 010883          283 CFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNAS  360 (498)
Q Consensus       283 ~~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~  360 (498)
                      +-. .+..+|+. |-.-|.|+|-|+....  ..+...+.+|...|.+++.+-+|..+|+++..|+ |+|||..+      
T Consensus       143 ~~~-~~k~~LafPg~k~GqvQi~dL~~~~--~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~------  213 (346)
T KOG2111|consen  143 CPT-SNKSLLAFPGFKTGQVQIVDLASTK--PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED------  213 (346)
T ss_pred             cCC-CCceEEEcCCCccceEEEEEhhhcC--cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC------
Confidence            432 33344444 3456999999997332  1135778899999999999999999999999998 89999988      


Q ss_pred             cccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc--
Q 010883          361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--  438 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--  438 (498)
                                                  +..+..++......    ..++++|||+..+|+++|..|+|+||.+....  
T Consensus       214 ----------------------------g~~l~E~RRG~d~A----~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~  261 (346)
T KOG2111|consen  214 ----------------------------GTLLQELRRGVDRA----DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENT  261 (346)
T ss_pred             ----------------------------CcEeeeeecCCchh----eEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCC
Confidence                                        35555555443322    23566888899999999999999999876422  


Q ss_pred             -E---------------------EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          439 -Q---------------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       439 -~---------------------~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                       .                     +..++-..++..-++|-.+.+.++..+.||..+-+.+...
T Consensus       262 ~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  262 EDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             ccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence             1                     1112223456666788877666777778898776665544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.1e-13  Score=133.45  Aligned_cols=202  Identities=17%  Similarity=0.148  Sum_probs=137.0

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCC-
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSP-  198 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~-  198 (498)
                      ...+..+...+...+|||||+.||..+.   +..|.+|++.+++... .....+   .+..++|+|||+.|+.. +.++ 
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~---~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPR---HNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCC---CcCCeEECCCCCEEEEEEcCCCC
Confidence            4456667788999999999999987643   4579999998874322 222222   35568999999988875 3344 


Q ss_pred             -eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeeeEEEec
Q 010883          199 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILA  274 (498)
Q Consensus       199 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-g--~i~vwd~~~~~~~~~~~~  274 (498)
                       .|.+||+.+++...+...                 ...+....|+|||+.|+..+.+ +  .|+++|+.+++. ..+..
T Consensus       267 ~~I~~~d~~tg~~~~lt~~-----------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~  328 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDG-----------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW  328 (429)
T ss_pred             cEEEEEECCCCCEEEccCC-----------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec
Confidence             599999988765443221                 1146678999999988877754 3  566668777654 34444


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc---EE
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA---IK  348 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~---i~  348 (498)
                      +........|+ +++++|+..+.+   ..|.+||+.    .+. ...+... .......|+|||+.|+.++.++.   +.
T Consensus       329 ~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~----~g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~  401 (429)
T PRK03629        329 EGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA----TGG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLN  401 (429)
T ss_pred             CCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC----CCC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEE
Confidence            44556678898 777777765543   358888986    333 2333321 22346789999999999888764   66


Q ss_pred             EEeCCC
Q 010883          349 LWDIRK  354 (498)
Q Consensus       349 iwd~~~  354 (498)
                      ++++..
T Consensus       402 ~~~~~G  407 (429)
T PRK03629        402 LVSTDG  407 (429)
T ss_pred             EEECCC
Confidence            677643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=8.6e-13  Score=121.28  Aligned_cols=293  Identities=15%  Similarity=0.215  Sum_probs=187.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-----EC-----CCeE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-----SM-----SPIV  200 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-----s~-----d~~i  200 (498)
                      ..++...++|++|+++|.+ .+..++|++...+..+...    ... .+.++.|+|-+.+|.+-     ..     ...+
T Consensus        34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~----~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~  107 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCV----ELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV  107 (566)
T ss_pred             CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEe----ccc-eeeeeeecccccccccccccccccCCCCCCCce
Confidence            3447889999999998877 4568999999887522222    122 68999999999999862     11     2357


Q ss_pred             EEEECCCCceecccccccccc--Cccccc-----------------------cCCCCceecEEEEEEcCCCC--EEEE--
Q 010883          201 HIVDVGSGTMESLANVTEIHD--GLDFSA-----------------------ADDGGYSFGIFSLKFSTDGR--ELVA--  251 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~h~~~i~~~~~s~~g~--~l~~--  251 (498)
                      .+|+++++.....+... ...  ...|+.                       ....-|...|..+.++|.+.  .+|+  
T Consensus       108 ~v~~vet~~~~s~~q~k-~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv  186 (566)
T KOG2315|consen  108 LVYNVETGVQRSQIQKK-MQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV  186 (566)
T ss_pred             eeeeeccceehhheehh-hhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence            89999985432222211 111  011111                       11112455788888888633  3443  


Q ss_pred             ---EeCCCeEEEEECCCCeeeEEE---eccCCCeeEEEEeCCCCCEEEEeeC--C---------CeEEEEcCccccCCCc
Q 010883          252 ---GSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSD--D---------NLCKVWDRRCLNVKGK  314 (498)
Q Consensus       252 ---g~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~s~--d---------g~i~vwd~~~~~~~~~  314 (498)
                         ++.-+.|+||.......-..+   .-....-..+.|++....+|+.++.  |         .++++.++.     +.
T Consensus       187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-----g~  261 (566)
T KOG2315|consen  187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-----GE  261 (566)
T ss_pred             cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-----Cc
Confidence               344567899987632221111   1122334557787444444444432  2         367777774     33


Q ss_pred             eeEEeccccccEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          315 PAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      ....-....++|.++.|+|+++.+++  |-+-..+.|||++.                                   ..+
T Consensus       262 s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----------------------------------~~v  306 (566)
T KOG2315|consen  262 SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----------------------------------KPV  306 (566)
T ss_pred             eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----------------------------------CEe
Confidence            33333335799999999999987664  55677899999985                                   344


Q ss_pred             EEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC--
Q 010883          393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW--  467 (498)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~--  467 (498)
                      ..+....  +      ....|+|.|++|+.++.   .|.|-|||+.+.+++..+....  -+-+.|+|||.+|+|+..  
T Consensus       307 ~df~egp--R------N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaP  376 (566)
T KOG2315|consen  307 FDFPEGP--R------NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAP  376 (566)
T ss_pred             EeCCCCC--c------cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccc
Confidence            4333221  1      12246779999998876   4899999999999998887543  355799999999988864  


Q ss_pred             ----CCcEEEecCCCCC
Q 010883          468 ----DGDVVRWEFPGNG  480 (498)
Q Consensus       468 ----Dg~i~iw~~~~~~  480 (498)
                          |+.++||++.+..
T Consensus       377 RlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  377 RLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             cEEecCCeEEEEecCce
Confidence                7889999998753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.64  E-value=6.9e-14  Score=139.18  Aligned_cols=261  Identities=13%  Similarity=0.141  Sum_probs=167.9

Q ss_pred             cCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883          172 AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  249 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l  249 (498)
                      .+.|...|..++.++.. .++++||.||+|++|+...-... .....     ...+..     -...+.++...+.+..+
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS-----~ltys~-----~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS-----ELTYSP-----EGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeee-----eEEEec-----cCCceEEEEeccCCCeE
Confidence            45667788888887755 99999999999999998642221 00000     000100     12378899999999999


Q ss_pred             EEEeCCCeEEEEECCCCee-------eEEEecc-CCCe-eEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEE-
Q 010883          250 VAGSSDDCIYVYDLEANKL-------SLRILAH-TSDV-NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGV-  318 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~-------~~~~~~~-~~~v-~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~-  318 (498)
                      |+++.||.|.+.++.....       .+....+ .+.+ ..-+|...... .++.+..-+.|..||++..    ..... 
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~----~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR----HDAWRL 1189 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh----hhHHhh
Confidence            9999999999999876211       1111112 2233 33344433344 7888889999999999833    32222 


Q ss_pred             -eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883          319 -LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG  397 (498)
Q Consensus       319 -~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (498)
                       .....+.|++++.+|.+++++.|...|.+.+||+|-.                                  .++..+..
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~----------------------------------~~i~sw~~ 1235 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR----------------------------------VPILSWEH 1235 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecC----------------------------------ceeecccC
Confidence             2234578999999999999999999999999999973                                  33333332


Q ss_pred             CceeEEEEEEEeccccCCCCcEEEEE-e-cCCeEEEEECCCCcEEEEeccC-------------------CCCeeeeEEc
Q 010883          398 HSVLRTLIRCHFSPVYSTGQKYIYTG-S-HDSCVYVYDLVSGEQVAALKYH-------------------TSPVRDCSWH  456 (498)
Q Consensus       398 ~~~~~~~~~~~~~~~~s~~~~~l~~g-~-~dg~i~iwd~~~~~~~~~~~~h-------------------~~~v~~l~~s  456 (498)
                      ... ..+.....++. .+.....+++ + ..+.|-+|++.+|.+...+...                   .-....+.+.
T Consensus      1236 P~~-~~i~~v~~~~~-~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1236 PAR-APIRHVWLCPT-YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred             ccc-CCcceEEeecc-CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence            111 22222222322 2233444444 3 4678999999998766555322                   1112233444


Q ss_pred             CCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          457 PSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       457 p~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ..+.++.+|+.|+.|+.||.......
T Consensus      1314 ~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             cCCceeeecCCccceeeccCCCcccc
Confidence            45668999999999999999876544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=4.2e-15  Score=135.29  Aligned_cols=187  Identities=19%  Similarity=0.256  Sum_probs=132.2

Q ss_pred             cCCCCEEEEEECCCeEEEEECCCCeEEEEEee--cCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCceeccccc
Q 010883          140 SADGSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANV  216 (498)
Q Consensus       140 s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~~~~~~~~  216 (498)
                      .|+|--|..|..-|.|.+.|.... .+.++..  ..-....|+++.|.|.+ ..++++-.+|.+.++|..-.........
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~  260 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY  260 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence            345666778888888888886542 1111110  01123489999999955 4556667799999998632111111111


Q ss_pred             cccccCccccccCC------------CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          217 TEIHDGLDFSAADD------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       217 ~~~~~~~~~~~~~~------------~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      ....++-.|.....            .--.+.|...+|+|||++||+.+.||.++|+|..+.+++..++.--+...|++|
T Consensus       261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence            11111111111100            011337889999999999999999999999999998887766666788999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                      + ||+++|++|+.|-.|.||.+.    ..+.+..-.+|...|..++|.
T Consensus       341 S-PDGKyIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  341 S-PDGKYIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             c-CCccEEEecCCcceEEEEEec----cceEEEeccccccceeeEeec
Confidence            8 899999999999999999998    888999999999999999998

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.64  E-value=3e-13  Score=116.05  Aligned_cols=277  Identities=14%  Similarity=0.183  Sum_probs=174.8

Q ss_pred             CCceEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EECCCeEEEEECCCC
Q 010883          131 TSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s~d~~i~iwd~~~~  208 (498)
                      -..|.-+.|..|..+++. ...++.|.+|++...+-..++.   ....++.+++|||||+.|+. ...+-.|.+|.+.+.
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---cCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence            345677889998876665 4678899999998765444443   33447999999999976654 556889999999887


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------------------------------
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------------------------  255 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---------------------------------  255 (498)
                      +...+.....                 .+..++|+|||++.+.++..                                 
T Consensus       125 ~~~~~~~pK~-----------------~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs  187 (447)
T KOG4497|consen  125 KGYLLPHPKT-----------------NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS  187 (447)
T ss_pred             eeEEeccccc-----------------CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence            7654443332                 34556666666655544321                                 


Q ss_pred             ---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC---------------------
Q 010883          256 ---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---------------------  311 (498)
Q Consensus       256 ---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------  311 (498)
                         ..+.+||---.-.+..+ .-.-.+..++|+ |.+++|+.|+.|+.+++.+--..+.                     
T Consensus       188 Pdg~~laVwd~~Leykv~aY-e~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke  265 (447)
T KOG4497|consen  188 PDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE  265 (447)
T ss_pred             CCCcEEEEecchhhheeeee-eeccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence               12334442211111111 122467889998 7899999999999998854110000                     


Q ss_pred             -----------------------------------------CCceeEEeccccccEEEEEEcCCCCEEEEEeC--CCcEE
Q 010883          312 -----------------------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIK  348 (498)
Q Consensus       312 -----------------------------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--dg~i~  348 (498)
                                                               ..++...+....-++--++|++|..++++-..  -..+-
T Consensus       266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW  345 (447)
T KOG4497|consen  266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW  345 (447)
T ss_pred             hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence                                                     00001111122334667899999999887653  35799


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC  428 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  428 (498)
                      +||++..+.....                                  ...   ..+...    .|.|....|+.+.....
T Consensus       346 ~Wdlq~l~l~avL----------------------------------iQk---~piraf----~WdP~~prL~vctg~sr  384 (447)
T KOG4497|consen  346 LWDLQNLKLHAVL----------------------------------IQK---HPIRAF----EWDPGRPRLVVCTGKSR  384 (447)
T ss_pred             EEechhhhhhhhh----------------------------------hhc---cceeEE----EeCCCCceEEEEcCCce
Confidence            9999874322111                                  000   112222    34556777777777778


Q ss_pred             EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883          429 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV  471 (498)
Q Consensus       429 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i  471 (498)
                      +++|.......+.. ....-.|..+.|+-+|..++-++.|-..
T Consensus       385 LY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  385 LYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             EEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceE
Confidence            99999765444433 3344679999999999999999998643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.9e-15  Score=134.71  Aligned_cols=265  Identities=18%  Similarity=0.215  Sum_probs=189.7

Q ss_pred             cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEE
Q 010883          172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGREL  249 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l  249 (498)
                      +..|.+.|..+.|+..|..|++++.|..|.+||...+.....+.               .||...|....|.|  +.+.+
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------------SGH~~NvfQaKFiP~s~d~ti  202 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------------SGHCNNVFQAKFIPFSGDRTI  202 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---------------cccccchhhhhccCCCCCcCc
Confidence            45788899999999999999999999999999998876543332               26777888888988  44679


Q ss_pred             EEEeCCCeEEEEECCCCe-e--eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc--
Q 010883          250 VAGSSDDCIYVYDLEANK-L--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--  324 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--  324 (498)
                      ++++.||.|++=.+.... +  ...+..|.++|..++.-|....-|++++.|+.+.-+|+++........ .-..+..  
T Consensus       203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~  281 (559)
T KOG1334|consen  203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKER  281 (559)
T ss_pred             eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccc
Confidence            999999999987664332 2  345668999999999988888999999999999999998554333332 2223333  


Q ss_pred             -cEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883          325 -GITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR  402 (498)
Q Consensus       325 -~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (498)
                       ....++..|.. ..+++++.|..+++||.+........                            ..+..+..+....
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n----------------------------~~~~~f~p~hl~~  333 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN----------------------------GVLDKFCPHHLVE  333 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc----------------------------chhhhcCCccccc
Confidence             56788888855 48999999999999999885433221                            1222222222111


Q ss_pred             EEEEEEeccccCCCCcEEEEEecCCeEEEEECCC--C----------cEEEE-eccCCC--CeeeeEE-cCCCCeEEEEe
Q 010883          403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--G----------EQVAA-LKYHTS--PVRDCSW-HPSQPMLVSSS  466 (498)
Q Consensus       403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~----------~~~~~-~~~h~~--~v~~l~~-sp~~~~l~s~~  466 (498)
                      .-...+...+|+.++.-|.+.-.|-.|+++.-..  |          ..+.. +++|..  .|..+.| -|...++++|+
T Consensus       334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS  413 (559)
T KOG1334|consen  334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS  413 (559)
T ss_pred             cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence            1112223346666777777777788899995433  2          12233 678864  4667754 56778999999


Q ss_pred             CCCcEEEecCCCCC
Q 010883          467 WDGDVVRWEFPGNG  480 (498)
Q Consensus       467 ~Dg~i~iw~~~~~~  480 (498)
                      +=|.|.||+-.+++
T Consensus       414 DCGhIFiW~K~t~e  427 (559)
T KOG1334|consen  414 DCGHIFIWDKKTGE  427 (559)
T ss_pred             ccceEEEEecchhH
Confidence            99999999977654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=8e-16  Score=137.43  Aligned_cols=230  Identities=17%  Similarity=0.198  Sum_probs=184.8

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      ....+.++.+|++|+.|+..|.|..+|..+++....+.+.+                 .|.++.|..+.+++|++ ....
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-----------------tv~Dv~~LHneq~~AVA-QK~y  192 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-----------------TVRDVTFLHNEQFFAVA-QKKY  192 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-----------------hhhhhhhhcchHHHHhh-hhce
Confidence            46778999999999999999999999999998877766554                 68889999888877776 5667


Q ss_pred             EEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883          258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                      ++|||- .|..+..+..| ..|..+.|. |.--+|++++..|.++.-|+.    .++.+..+....+.+..+.-+|-...
T Consensus       193 ~yvYD~-~GtElHClk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS----~GklVa~~~t~~G~~~vm~qNP~NaV  265 (545)
T KOG1272|consen  193 VYVYDN-NGTELHCLKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDVS----TGKLVASIRTGAGRTDVMKQNPYNAV  265 (545)
T ss_pred             EEEecC-CCcEEeehhhc-Cchhhhccc-chhheeeecccCCceEEEeec----hhhhhHHHHccCCccchhhcCCccce
Confidence            999995 45566777555 578999997 677889999999999999998    88888888888889999999999889


Q ss_pred             EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883          338 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ  417 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  417 (498)
                      +-+|...|+|.+|.....                                  .++..+-.|....      .++++.++|
T Consensus       266 ih~GhsnGtVSlWSP~sk----------------------------------ePLvKiLcH~g~V------~siAv~~~G  305 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSK----------------------------------EPLVKILCHRGPV------SSIAVDRGG  305 (545)
T ss_pred             EEEcCCCceEEecCCCCc----------------------------------chHHHHHhcCCCc------ceEEECCCC
Confidence            999999999999998763                                  2333333444222      223667799


Q ss_pred             cEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          418 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       418 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      +|+++.+.|..++|||++.-..+.++.. .-+...+++|..|  +++++....|.||.
T Consensus       306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             cEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence            9999999999999999998887777654 4567888998666  44445556799995

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.7e-13  Score=130.61  Aligned_cols=215  Identities=20%  Similarity=0.172  Sum_probs=141.0

Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEec
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILA  274 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~  274 (498)
                      ..|.+||........+..                 +...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..
T Consensus       184 ~~l~i~D~~g~~~~~lt~-----------------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~  245 (433)
T PRK04922        184 YALQVADSDGYNPQTILR-----------------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVAS  245 (433)
T ss_pred             EEEEEECCCCCCceEeec-----------------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eecc
Confidence            368899986554332221                 2236889999999999998774   346999999887653 3444


Q ss_pred             cCCCeeEEEEeCCCCCEE-EEeeCCC--eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCc--EE
Q 010883          275 HTSDVNTVCFGDESGHLI-YSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IK  348 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l-~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~--i~  348 (498)
                      ..+...++.|+ ++++.| ++.+.+|  .|++||+.    .+. ...+..+.......+|+|||+.|+..+. +|.  |+
T Consensus       246 ~~g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~----~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy  319 (433)
T PRK04922        246 FRGINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLG----SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIY  319 (433)
T ss_pred             CCCCccCceEC-CCCCEEEEEEeCCCCceEEEEECC----CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            55556688998 667655 4556665  58999986    333 4455555555677899999998887764 444  55


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC-
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS-  427 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-  427 (498)
                      ++|+.....                                +.+ ++.+..        ...+.|||||++|+..+.++ 
T Consensus       320 ~~dl~~g~~--------------------------------~~l-t~~g~~--------~~~~~~SpDG~~Ia~~~~~~~  358 (433)
T PRK04922        320 RVAASGGSA--------------------------------ERL-TFQGNY--------NARASVSPDGKKIAMVHGSGG  358 (433)
T ss_pred             EEECCCCCe--------------------------------EEe-ecCCCC--------ccCEEECCCCCEEEEEECCCC
Confidence            566554210                                011 111111        12457889999998876543 


Q ss_pred             --eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC---CcEEEecCCCC
Q 010883          428 --CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGN  479 (498)
Q Consensus       428 --~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D---g~i~iw~~~~~  479 (498)
                        .|++||+.+++.. .+. +........|+|||++|+..+.+   +.|.++++.+.
T Consensus       359 ~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        359 QYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             ceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence              6999999888765 443 33345678999999987766653   35777777554

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=8.8e-14  Score=122.06  Aligned_cols=258  Identities=19%  Similarity=0.183  Sum_probs=176.7

Q ss_pred             eeEEEEEeCCCCC--eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          177 WTVTDTSLSPDQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       177 ~~v~~~~~sp~~~--~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      ..|+.++|.-+++  .+...+.+..+..+.+....+.....-.          ......+.+|..++.. || .|++|-.
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~----------~~~~l~~~~I~gl~~~-dg-~Litc~~  123 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDA----------KTVSLGTKSIKGLKLA-DG-TLITCVS  123 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccc----------cccccccccccchhhc-CC-EEEEEec
Confidence            3577777765553  3333335555666655544432221000          0001223356666554 44 5888889


Q ss_pred             CCeEEEEECCCCe----eeEEEeccCCCeeEEEEeCCCCCEEEEeeCC--CeEEEEcCccccCCCceeEEeccc------
Q 010883          255 DDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKPAGVLMGH------  322 (498)
Q Consensus       255 dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~------  322 (498)
                      +|.+.+|..+.+.    .+..+.. ...+..+.-++....++++|+..  ..+.+||+.    ..+++..-..-      
T Consensus       124 sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle----~~~qiw~aKNvpnD~L~  198 (412)
T KOG3881|consen  124 SGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLE----QSKQIWSAKNVPNDRLG  198 (412)
T ss_pred             CCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecc----cceeeeeccCCCCcccc
Confidence            9999999988443    2233323 35667777777778889999999  899999997    44333322211      


Q ss_pred             ---cccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883          323 ---LEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG  397 (498)
Q Consensus       323 ---~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (498)
                         .-.++.+.|-+.  ...|++++.-+.+++||.+...                                 +++..+..
T Consensus       199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---------------------------------RPV~~fd~  245 (412)
T KOG3881|consen  199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR---------------------------------RPVAQFDF  245 (412)
T ss_pred             ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC---------------------------------cceeEecc
Confidence               124677888887  7899999999999999998643                                 44555544


Q ss_pred             CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      ......      +....|++++|++|..-|.+..||++.++.+.. +++-.+.|+++..+|.+++|+++|-|..|+|+|+
T Consensus       246 ~E~~is------~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  246 LENPIS------STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ccCcce------eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence            332222      224456899999999999999999999998877 8889999999999999999999999999999999


Q ss_pred             CCCCCCCCccchhc
Q 010883          477 PGNGEAAPPLNKKR  490 (498)
Q Consensus       477 ~~~~~~~~~~~~~~  490 (498)
                      .+.........+.+
T Consensus       320 ktrkll~kvYvKs~  333 (412)
T KOG3881|consen  320 KTRKLLHKVYVKSR  333 (412)
T ss_pred             ccchhhhhhhhhcc
Confidence            98655544444444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.62  E-value=2.5e-13  Score=114.87  Aligned_cols=276  Identities=19%  Similarity=0.200  Sum_probs=178.0

Q ss_pred             CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC---CCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccc
Q 010883          152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA  227 (498)
Q Consensus       152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (498)
                      -|.+.+|++...+...-..........+..+.|.-   +|. .++-+-..|.|.++..........+..-....   .  
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k---i--  119 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK---I--  119 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh---h--
Confidence            46788999877544331111222233577777764   444 55666778889998865433222221111000   0  


Q ss_pred             cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEc
Q 010883          228 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD  305 (498)
Q Consensus       228 ~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd  305 (498)
                           ......++.|++.+..++++..+|.+.+-+........  .++.|.-.+....|+..+++++++|+.|+.+..||
T Consensus       120 -----~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D  194 (339)
T KOG0280|consen  120 -----SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD  194 (339)
T ss_pred             -----hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence                 00035678999999999999999999866655554433  67899999999999988889999999999999999


Q ss_pred             CccccCCCceeE-EeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccc
Q 010883          306 RRCLNVKGKPAG-VLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD  383 (498)
Q Consensus       306 ~~~~~~~~~~~~-~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (498)
                      +|..   .+.+. ..+-|..+|.+|.-+| .+.+|++|+.|..|++||.|++..+...                      
T Consensus       195 ~R~p---~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~----------------------  249 (339)
T KOG0280|consen  195 IRIP---KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK----------------------  249 (339)
T ss_pred             ecCC---cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----------------------
Confidence            9832   23333 2556889999999876 5789999999999999999986533211                      


Q ss_pred             ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC--c---EEEEeccCCCCeeeeEEcCC
Q 010883          384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--E---QVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~l~~sp~  458 (498)
                                 -   .....+.+...+|...  +++|+++-.+| .+|-+...+  +   .....+.|.+-+..-.|...
T Consensus       250 -----------~---~v~GGVWRi~~~p~~~--~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~  312 (339)
T KOG0280|consen  250 -----------A---KVGGGVWRIKHHPEIF--HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK  312 (339)
T ss_pred             -----------C---ccccceEEEEecchhh--hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc
Confidence                       0   0012333344444321  33444444444 556655443  2   33444578887888888655


Q ss_pred             CCeEEEEe-CCCcEE-EecCCCC
Q 010883          459 QPMLVSSS-WDGDVV-RWEFPGN  479 (498)
Q Consensus       459 ~~~l~s~~-~Dg~i~-iw~~~~~  479 (498)
                      ..+|+||+ .|..++ +|-.-++
T Consensus       313 ~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  313 DSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cceeeeeeccccceeeeeeeccC
Confidence            56888876 677755 8865443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=4.1e-13  Score=130.47  Aligned_cols=206  Identities=17%  Similarity=0.125  Sum_probs=141.3

Q ss_pred             CCCCCccccCCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EE
Q 010883          120 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-AS  195 (498)
Q Consensus       120 ~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s  195 (498)
                      ....+..+..|...+.+.+|||||+.|+..+.   +..|.+||+.++.... .   ..+.+.+...+|+|||+.|+. .+
T Consensus       190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l---~~~~g~~~~~~~SPDG~~la~~~~  265 (435)
T PRK05137        190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V---GNFPGMTFAPRFSPDGRKVVMSLS  265 (435)
T ss_pred             CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e---ecCCCcccCcEECCCCCEEEEEEe
Confidence            34445667788899999999999999988764   4689999998874322 1   223446778999999998765 44


Q ss_pred             CCC--eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-C--CeEEEEECCCCeeeE
Q 010883          196 MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLSL  270 (498)
Q Consensus       196 ~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-d--g~i~vwd~~~~~~~~  270 (498)
                      .++  .|.+||+.++....+..                 +........|+|||+.|+..+. +  ..|+++|+..++. .
T Consensus       266 ~~g~~~Iy~~d~~~~~~~~Lt~-----------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~  327 (435)
T PRK05137        266 QGGNTDIYTMDLRSGTTTRLTD-----------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R  327 (435)
T ss_pred             cCCCceEEEEECCCCceEEccC-----------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E
Confidence            444  47888988876543322                 1123556899999999888764 2  3688999877654 4


Q ss_pred             EEeccCCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---
Q 010883          271 RILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---  344 (498)
Q Consensus       271 ~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---  344 (498)
                      .+..+...+....|+ ++++.|+..+.+   ..|.+||+.    . .....+. ....+..+.|+|||+.|+..+.+   
T Consensus       328 ~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~----~-~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~  400 (435)
T PRK05137        328 RISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPD----G-SGERILT-SGFLVEGPTWAPNGRVIMFFRQTPGS  400 (435)
T ss_pred             EeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECC----C-CceEecc-CCCCCCCCeECCCCCEEEEEEccCCC
Confidence            454455667778998 778877766543   357788874    2 2223332 22346778999999998765543   


Q ss_pred             ---CcEEEEeCCC
Q 010883          345 ---QAIKLWDIRK  354 (498)
Q Consensus       345 ---g~i~iwd~~~  354 (498)
                         ..+.++|+..
T Consensus       401 ~~~~~L~~~dl~g  413 (435)
T PRK05137        401 GGAPKLYTVDLTG  413 (435)
T ss_pred             CCcceEEEEECCC
Confidence               2577777765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.59  E-value=1.2e-13  Score=114.97  Aligned_cols=253  Identities=15%  Similarity=0.144  Sum_probs=161.7

Q ss_pred             CCCcccc-CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-----CCC----eE
Q 010883          122 NGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-----DQR----HL  191 (498)
Q Consensus       122 ~~~~~l~-~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~----~l  191 (498)
                      .....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+....      -.++++.|.+     .++    .+
T Consensus        46 r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~S------i~~nslgFCrfSl~~~~k~~eqll  118 (323)
T KOG0322|consen   46 RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHS------IVVNSLGFCRFSLVKKPKNSEQLL  118 (323)
T ss_pred             ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEee------eeccccccccceeccCCCcchhhe
Confidence            3344455 67888999999998 457777899999999998753332211      2344444443     221    11


Q ss_pred             EEEECCC-eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCC--EEEEEeCCCeEEEEECCCCe
Q 010883          192 VYASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR--ELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       192 ~~~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~--~l~~g~~dg~i~vwd~~~~~  267 (498)
                      ++-+... .+++-|.........            ......+..+.+.|..+.- ++.  ++++|..+|.|.+||+.++.
T Consensus       119 ~yp~rgsde~h~~D~g~~tqv~i------------~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~  186 (323)
T KOG0322|consen  119 EYPSRGSDETHKQDGGDTTQVQI------------ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGD  186 (323)
T ss_pred             ecCCcccchhhhhccCccceeEc------------cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCc
Confidence            1111100 122222111111111            1111123344677777543 333  56778889999999999973


Q ss_pred             e----------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883          268 L----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       268 ~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                      .          ......|..+|.++.|. +.-..=++|+.+..+..|.+......-..-....-..-+|..+...||++.
T Consensus       187 ~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI  265 (323)
T KOG0322|consen  187 KIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI  265 (323)
T ss_pred             eeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE
Confidence            3          33445799999999996 444445678888889999886321122222223334467888999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883          338 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ  417 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  417 (498)
                      +|+++.|+.|+||..+++                                  +++..++-|..  .+    .+.+|+|+.
T Consensus       266 lATAGWD~RiRVyswrtl----------------------------------~pLAVLkyHsa--gv----n~vAfspd~  305 (323)
T KOG0322|consen  266 LATAGWDHRIRVYSWRTL----------------------------------NPLAVLKYHSA--GV----NAVAFSPDC  305 (323)
T ss_pred             EeecccCCcEEEEEeccC----------------------------------Cchhhhhhhhc--ce----eEEEeCCCC
Confidence            999999999999999984                                  56666666662  22    334777899


Q ss_pred             cEEEEEecCCeEEEEEC
Q 010883          418 KYIYTGSHDSCVYVYDL  434 (498)
Q Consensus       418 ~~l~~g~~dg~i~iwd~  434 (498)
                      .++|+++.|++|-+|++
T Consensus       306 ~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  306 ELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhccCCceEEeeec
Confidence            99999999999999986

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=5.5e-13  Score=128.93  Aligned_cols=196  Identities=19%  Similarity=0.206  Sum_probs=128.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCCeEEEEcCccccC
Q 010883          236 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNV  311 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~  311 (498)
                      .+.+.+|+|||+.|+..+.+   ..|++||+.+++.. .+....+.+....|+ |+++.|+ +.+.+|...+|.+..   
T Consensus       197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~---  271 (427)
T PRK02889        197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA---  271 (427)
T ss_pred             CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC---
Confidence            68899999999999887643   46999999988753 344455666789998 6676665 667788877776541   


Q ss_pred             CCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883          312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ  390 (498)
Q Consensus       312 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (498)
                      .+.....+..+........|+|||+.|+..+. ++...||.+......                               .
T Consensus       272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-------------------------------~  320 (427)
T PRK02889        272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-------------------------------A  320 (427)
T ss_pred             CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-------------------------------e
Confidence            22334555555555677889999998886654 466667665421100                               0


Q ss_pred             eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC
Q 010883          391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW  467 (498)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~  467 (498)
                      ....+.+.        ....+.|||||++|+..+.++   .|++||+.+++... +..+ .......|+|||+.|+.++.
T Consensus       321 ~~lt~~g~--------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        321 QRVTFTGS--------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             EEEecCCC--------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEe
Confidence            01111111        112457889999998877654   69999998887543 3322 34567899999998877765


Q ss_pred             CC-c--EEEecCC
Q 010883          468 DG-D--VVRWEFP  477 (498)
Q Consensus       468 Dg-~--i~iw~~~  477 (498)
                      ++ .  +.+.++.
T Consensus       391 ~~g~~~l~~~~~~  403 (427)
T PRK02889        391 QGGRSVLAAVSSD  403 (427)
T ss_pred             cCCCEEEEEEECC
Confidence            44 3  4444553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=9.2e-12  Score=116.64  Aligned_cols=258  Identities=16%  Similarity=0.168  Sum_probs=154.8

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCcee
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTME  211 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~  211 (498)
                      .-..+.|+|||+++++++.||.|.++|+.+++.+.+.....    ....+++++||++++++. ..+.+.++|.++.+..
T Consensus        38 ~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   38 PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred             ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence            33457899999999999999999999999998776654332    478899999999999876 4889999999998776


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeE-EEeccCCCeeEEEEeCCCC
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESG  289 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~  289 (498)
                      ...........         +....+..+..+|....++..- ..+.|.+.|....+.+. +............|. +++
T Consensus       114 ~~I~~~~~~~~---------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d-pdg  183 (369)
T PF02239_consen  114 KTIPTGGMPVD---------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD-PDG  183 (369)
T ss_dssp             EEEE--EE-TT---------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE--TTS
T ss_pred             eeccccccccc---------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC-ccc
Confidence            65443322110         1223677888888888555554 45889999987765332 233344566788886 777


Q ss_pred             CEEEEe-eCCCeEEEEcCcccc---------------------------------------------------CCCceeE
Q 010883          290 HLIYSG-SDDNLCKVWDRRCLN---------------------------------------------------VKGKPAG  317 (498)
Q Consensus       290 ~~l~s~-s~dg~i~vwd~~~~~---------------------------------------------------~~~~~~~  317 (498)
                      ++++++ ..+..|-++|.....                                                   ...+.+.
T Consensus       184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~  263 (369)
T PF02239_consen  184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK  263 (369)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred             ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence            776554 455677777764110                                                   0111122


Q ss_pred             EeccccccEEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE
Q 010883          318 VLMGHLEGITFIDSRGDGRYLISN----GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA  393 (498)
Q Consensus       318 ~~~~~~~~v~~l~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (498)
                      .+.....+ ..+..+|+++++.+.    ...+.|.++|.++..                                  .+.
T Consensus       264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~----------------------------------~~~  308 (369)
T PF02239_consen  264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK----------------------------------VVK  308 (369)
T ss_dssp             EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE----------------------------------EEE
T ss_pred             EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc----------------------------------eeE
Confidence            22222222 456678888888877    344778888888742                                  222


Q ss_pred             EEccCceeEEEEEEEeccccCCCCcEEEEEecC--CeEEEEECCCCcEEEEec
Q 010883          394 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--SCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~  444 (498)
                      .+..... ..    ..++.|++||+.+..+..+  +.|.+||..+.+.+.++.
T Consensus       309 ~i~~~~~-~~----~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  309 TITPGPG-KR----VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEeccCC-Cc----EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            2221111 01    2344678899988776654  369999999999998886

...

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.57  E-value=5.5e-12  Score=114.70  Aligned_cols=299  Identities=16%  Similarity=0.168  Sum_probs=196.2

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC-------
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-------  198 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~-------  198 (498)
                      .+..-.-++..++|||.|.+|++....| |.+|.......+....    |. .|..+.|+|.++||.+-+..+       
T Consensus        27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~----~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e  100 (561)
T COG5354          27 RFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR----HP-DVKYLDFSPNEKYLVTWSREPIIEPEIE  100 (561)
T ss_pred             cccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee----cC-CceecccCcccceeeeeccCCccChhhc
Confidence            3444677889999999999999887665 8999987764333322    22 599999999999999976543       


Q ss_pred             --------eEEEEECCCCceecccccccccc----CccccccCC-------------------CC------ceecEEEEE
Q 010883          199 --------IVHIVDVGSGTMESLANVTEIHD----GLDFSAADD-------------------GG------YSFGIFSLK  241 (498)
Q Consensus       199 --------~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------~~------h~~~i~~~~  241 (498)
                              .+.+||+.++.....+.......    .+.++....                   ..      ....|....
T Consensus       101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFs  180 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFS  180 (561)
T ss_pred             cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEE
Confidence                    49999999988765544332220    011111100                   00      124678888


Q ss_pred             EcCCC--CEEEE-----EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-----------CCCeEEE
Q 010883          242 FSTDG--RELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-----------DDNLCKV  303 (498)
Q Consensus       242 ~s~~g--~~l~~-----g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-----------~dg~i~v  303 (498)
                      |+|.+  ..|+.     .+..+.+++|.+..+..+....-....-..+.|. ..+++|+.--           ....+++
T Consensus       181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl  259 (561)
T COG5354         181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYL  259 (561)
T ss_pred             ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEE
Confidence            99853  34444     3457889999998776655443333344567786 5566554321           1246788


Q ss_pred             EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883          304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA  381 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (498)
                      +++.     ...+.......++|...+|.|.++.+++.  -++..+.++|++..                          
T Consensus       260 ~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--------------------------  308 (561)
T COG5354         260 LRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--------------------------  308 (561)
T ss_pred             Eeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc--------------------------
Confidence            8875     23333333567899999999998877654  47888999999862                          


Q ss_pred             ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEE-EeccCCCCeeeeEEcC
Q 010883          382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHP  457 (498)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp  457 (498)
                                +..+-.... .      ..+.|||.+++++.++.|   |.|.+||....-.+. .+.+.  ...-+.|+|
T Consensus       309 ----------l~~~~Pe~~-r------NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp  369 (561)
T COG5354         309 ----------LRFYFPEQK-R------NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP  369 (561)
T ss_pred             ----------eEEecCCcc-c------ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence                      111111111 1      123678899999997765   789999987665444 56543  345578999


Q ss_pred             CCCeEEEEe------CCCcEEEecCCCCCC
Q 010883          458 SQPMLVSSS------WDGDVVRWEFPGNGE  481 (498)
Q Consensus       458 ~~~~l~s~~------~Dg~i~iw~~~~~~~  481 (498)
                      |+.++.+..      .|..|.||++.+..-
T Consensus       370 d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         370 DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             CceEEEecCCCcccccCcceEEEEecCchh
Confidence            999877663      378899999987643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.57  E-value=2.5e-12  Score=125.11  Aligned_cols=233  Identities=21%  Similarity=0.231  Sum_probs=150.3

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD  229 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (498)
                      ..|.++|...+. ...+.   .+...+...+|+|||++|+.++.+   ..|++||+.+++.......             
T Consensus       170 ~~l~~~d~~g~~-~~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-------------  232 (417)
T TIGR02800       170 YELQVADYDGAN-PQTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-------------  232 (417)
T ss_pred             ceEEEEcCCCCC-CEEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-------------
Confidence            358888876442 22222   233368889999999999987754   4799999988765433221             


Q ss_pred             CCCceecEEEEEEcCCCCEEEEE-eCC--CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-CC--eEEE
Q 010883          230 DGGYSFGIFSLKFSTDGRELVAG-SSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV  303 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~~g~~l~~g-~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~v  303 (498)
                          ...+.+++|+|||+.|+.. +.+  ..|++||+.+++. ..+..+........|+ ++++.|+..+. ++  .|.+
T Consensus       233 ----~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~  306 (417)
T TIGR02800       233 ----PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYM  306 (417)
T ss_pred             ----CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEE
Confidence                1245668999999977654 333  3599999988754 4444555555677898 67777765554 33  5777


Q ss_pred             EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883          304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ  380 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (498)
                      +|+.    .+. ...+..+...+..+.|+|++++|+.++.++   .|.+||+.+..                        
T Consensus       307 ~d~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~------------------------  357 (417)
T TIGR02800       307 MDAD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG------------------------  357 (417)
T ss_pred             EECC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC------------------------
Confidence            7765    332 334444556677889999999999888775   78888887521                        


Q ss_pred             cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEc
Q 010883          381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWH  456 (498)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s  456 (498)
                                 ...+....       ....+.|+|||++|+..+.++   .+++.+. +++....+..+.+.+..++|+
T Consensus       358 -----------~~~l~~~~-------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       358 -----------ERVLTDTG-------LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             -----------eEEccCCC-------CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence                       11111110       012457888999888877754   4566664 455556665555666666664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.3e-13  Score=125.11  Aligned_cols=262  Identities=15%  Similarity=0.149  Sum_probs=173.5

Q ss_pred             CCceeEEEEEeCCCCCeEE-EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          174 SLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       174 ~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      .+...-+.|..+|||+|++ +|..-..|++||+..-.......+..                ..|.-.-.+.|-..++.-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDa----------------e~V~feiLsDD~SK~v~L  112 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDA----------------EVVDFEILSDDYSKSVFL  112 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccc----------------cceeEEEeccchhhheEe
Confidence            4455678899999999876 46668899999998754432221111                134444445555556666


Q ss_pred             eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          253 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                      ..|..|-+..-.......+   -+..-..++++.+...+++.|+ ...|+-+++.    .+..+..+....+.++++..+
T Consensus       113 ~~DR~IefHak~G~hy~~R---IP~~GRDm~y~~~scDly~~gs-g~evYRlNLE----qGrfL~P~~~~~~~lN~v~in  184 (703)
T KOG2321|consen  113 QNDRTIEFHAKYGRHYRTR---IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLE----QGRFLNPFETDSGELNVVSIN  184 (703)
T ss_pred             ecCceeeehhhcCeeeeee---cCcCCccccccCCCccEEEeec-CcceEEEEcc----ccccccccccccccceeeeec
Confidence            7777776654322211112   2334567888766666665554 4578888887    888888888788999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                      +-..+|++|+.+|.|.+||.+..+........                         ..+....+......    ..+..
T Consensus       185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~-------------------------~~v~s~pg~~~~~s----vTal~  235 (703)
T KOG2321|consen  185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA-------------------------SSVNSHPGGDAAPS----VTALK  235 (703)
T ss_pred             CccceEEecccCceEEEecchhhhhheeeecc-------------------------cccCCCccccccCc----ceEEE
Confidence            99999999999999999999985433222110                         00000011111111    23345


Q ss_pred             cCCCCcEEEEEecCCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCC--CeEEEEeCCCcEEEecCCCCCCCCCccchh
Q 010883          413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAPPLNKK  489 (498)
Q Consensus       413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~--~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~  489 (498)
                      |+.+|-.+++|+.+|.|+|||+++.+++..-. +..-+|..+.|.+.+  +.++|. +...++|||-.+++.........
T Consensus       236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~  314 (703)
T KOG2321|consen  236 FRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS  314 (703)
T ss_pred             ecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC
Confidence            67689999999999999999999988875543 335689999998763  456665 35689999998887665444333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.5e-12  Score=126.34  Aligned_cols=234  Identities=21%  Similarity=0.187  Sum_probs=146.3

Q ss_pred             eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccCC
Q 010883          154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  230 (498)
Q Consensus       154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
                      .|.++|.+.... ...   ......+....|+|||+.|+..+.+   ..|.+||+.+++...+.....            
T Consensus       199 ~l~i~d~dG~~~-~~l---~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------  262 (448)
T PRK04792        199 QLMIADYDGYNE-QML---LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------  262 (448)
T ss_pred             EEEEEeCCCCCc-eEe---ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------
Confidence            577778765422 221   1234478899999999999887643   268999998876543322111            


Q ss_pred             CCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCC--eEEEE
Q 010883          231 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW  304 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~-g~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg--~i~vw  304 (498)
                           .....+|+|||+.|+. .+.+|  .|+++|+.+++. ..+..+.......+|+ ++++.|+..+ .++  .|.++
T Consensus       263 -----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        263 -----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             -----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence                 2346799999998875 45555  488889988765 4455565667788998 6677665544 344  45556


Q ss_pred             cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883          305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA  381 (498)
Q Consensus       305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (498)
                      |+.    .++. ..+...........|+|||++|+..+.+ +  .|.++|+.+..                         
T Consensus       336 dl~----~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-------------------------  385 (448)
T PRK04792        336 NLA----SGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-------------------------  385 (448)
T ss_pred             ECC----CCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-------------------------
Confidence            664    3332 2222222233457899999998876553 3  35556665521                         


Q ss_pred             ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-C--eEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883          382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                                ...+....       ....|.|+|||+.|+..+.+ |  .+++++. +|.....+..+.+.+...+|+|-
T Consensus       386 ----------~~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        386 ----------MQVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             ----------eEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence                      11111110       11245788899988876654 3  4778886 56666777766777888999874

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=2.8e-13  Score=119.00  Aligned_cols=215  Identities=17%  Similarity=0.183  Sum_probs=158.2

Q ss_pred             ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEeecCCCceeEEEEEeCCCCCeE-EEEECC--CeEEE
Q 010883          127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHL-VYASMS--PIVHI  202 (498)
Q Consensus       127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l-~~~s~d--~~i~i  202 (498)
                      +.....+|-.++.. | ..|++|-.+|.+.+|....+..-. ....... ...+..+.-+|...++ ++|+..  ..+.|
T Consensus       101 ~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             cccccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceee
Confidence            33445566666554 3 357778889999999988442100 1111111 1257777777766555 458888  78999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCe
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDV  279 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v  279 (498)
                      ||++..+.+...+... .+.+.+.      -.-.++++.|.+.  ...||+++.-+.|++||...+ +++..+.-...++
T Consensus       178 wdle~~~qiw~aKNvp-nD~L~Lr------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~i  250 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVP-NDRLGLR------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPI  250 (412)
T ss_pred             eecccceeeeeccCCC-Cccccce------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcc
Confidence            9999875433322111 1111111      1226889999987  789999999999999999865 4667777778899


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE-eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      +++... ++++++++|..-|.+..||++    .++.... +.+..+.|++|..+|.++++++++-|..|+|+|+.+..
T Consensus       251 s~~~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  251 SSTGLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             eeeeec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            999997 889999999999999999998    6666655 88889999999999999999999999999999999843

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=7.1e-12  Score=107.39  Aligned_cols=178  Identities=17%  Similarity=0.226  Sum_probs=128.3

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC-ceeccccccccccCccccccCCC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDG  231 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~  231 (498)
                      ..|.|||=.....+....    ...+|.++.+.++.  |++. ..+.|.||...+. +....+......           
T Consensus        75 NkviIWDD~k~~~i~el~----f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NP-----------  136 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS----FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNP-----------  136 (346)
T ss_pred             ceEEEEecccCcEEEEEE----eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCC-----------
Confidence            469999955444444332    33479999997653  4444 4678999998743 332222211101           


Q ss_pred             CceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCee--eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe-EEEEcCc
Q 010883          232 GYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVWDRR  307 (498)
Q Consensus       232 ~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-i~vwd~~  307 (498)
                         ....++.-+.+..+||. |-.-|.|.|-|+...+.  ...+.+|.+.|.|++.+ .+|.++|++|..|+ |||||..
T Consensus       137 ---kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~  212 (346)
T KOG2111|consen  137 ---KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTE  212 (346)
T ss_pred             ---CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcC
Confidence               12334433334445554 33469999999987665  46788999999999998 88999999999997 7999998


Q ss_pred             cccCCCceeEEeccc--cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          308 CLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       308 ~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                          .++.+..+..-  ...|.+++|+|+..+|++++..|+|.|+.++...
T Consensus       213 ----~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  213 ----DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ----CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence                88888887643  3469999999999999999999999999998744

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=4.5e-12  Score=123.47  Aligned_cols=234  Identities=20%  Similarity=0.246  Sum_probs=148.7

Q ss_pred             eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccCC
Q 010883          154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  230 (498)
Q Consensus       154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
                      .|.++|.+.+. .....   .+...+....|+|||+.|+..+.+   ..|.+|++.+++...+....             
T Consensus       180 ~l~~~d~~g~~-~~~l~---~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-------------  242 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLL---QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-------------  242 (430)
T ss_pred             EEEEECCCCCC-ceEEe---cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence            47778877543 22221   234478899999999999887654   37999999888664433211             


Q ss_pred             CCceecEEEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCC--eEEEE
Q 010883          231 GGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW  304 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg--~i~vw  304 (498)
                          +.+....|+|||+.|+.. ..+|  .|++||+.+++. ..+..+........|+ ++++.|+..+ .+|  .|+++
T Consensus       243 ----g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~  316 (430)
T PRK00178        243 ----GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKV  316 (430)
T ss_pred             ----CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEE
Confidence                134468999999988754 3444  689999988765 3455566666778998 6676665544 344  56667


Q ss_pred             cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883          305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA  381 (498)
Q Consensus       305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (498)
                      |+.    .+.. ..+...........|+|||+.|+..+.+ +  .|.+||+.+..                         
T Consensus       317 d~~----~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~-------------------------  366 (430)
T PRK00178        317 NVN----GGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS-------------------------  366 (430)
T ss_pred             ECC----CCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC-------------------------
Confidence            765    3332 2222122233457899999999877653 3  47888887632                         


Q ss_pred             ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883          382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                                ...+....       ....+.|+|||+.++..+.+   ..|+++++. +.....+..+.+.+...+|+|-
T Consensus       367 ----------~~~lt~~~-------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        367 ----------VRILTDTS-------LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ----------EEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence                      11111100       01245788899999887654   357778874 4444556556677888889874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=7.5e-13  Score=112.52  Aligned_cols=151  Identities=13%  Similarity=0.271  Sum_probs=103.9

Q ss_pred             eEEEEeCCCCCEEEEeeC----------CCeEEEEcCccccCCCceeEEecc-ccccEEEEEEcCCCCEEEEE--eCCCc
Q 010883          280 NTVCFGDESGHLIYSGSD----------DNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISN--GKDQA  346 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~--~~dg~  346 (498)
                      ..+.|+ +.|++|+.-..          -|...+|.++.   ...+...+.- ..++|.+++|+|+|+.|++.  ..++.
T Consensus         9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~---~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~   84 (194)
T PF08662_consen    9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE---KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK   84 (194)
T ss_pred             EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEec---CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence            346676 55554443322          13455555542   2233434432 34579999999999987654  46779


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-  425 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-  425 (498)
                      |.+||++.                                   ..+..+.....    .    ...|||+|++|++++. 
T Consensus        85 v~lyd~~~-----------------------------------~~i~~~~~~~~----n----~i~wsP~G~~l~~~g~~  121 (194)
T PF08662_consen   85 VTLYDVKG-----------------------------------KKIFSFGTQPR----N----TISWSPDGRFLVLAGFG  121 (194)
T ss_pred             cEEEcCcc-----------------------------------cEeEeecCCCc----e----EEEECCCCCEEEEEEcc
Confidence            99999963                                   44555543221    1    2367789999999875 


Q ss_pred             --CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC------CCcEEEecCCCC
Q 010883          426 --DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW------DGDVVRWEFPGN  479 (498)
Q Consensus       426 --dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~------Dg~i~iw~~~~~  479 (498)
                        .|.|.+||+.+.+.+.... |. .++.++|+|||++|+++..      |+.++||++.+.
T Consensus       122 n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  122 NLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence              4679999999999888875 33 4789999999999998864      788999999765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=1.3e-12  Score=111.13  Aligned_cols=150  Identities=18%  Similarity=0.263  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE--ECCCeEEE
Q 010883          135 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI  202 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--s~d~~i~i  202 (498)
                      ..+.|+|+|++|+.-..          -+...+|.++........... ...++|.+++|+|+|+.+++.  ..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            46789999998775432          234556666332112222222 223469999999999987654  35679999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEeccCCCe
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      ||++.... ..+.                  ...+..+.|+|+|++|++++.   .|.|.+||+.+.+.+... .|. .+
T Consensus        88 yd~~~~~i-~~~~------------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~-~~  146 (194)
T PF08662_consen   88 YDVKGKKI-FSFG------------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHS-DA  146 (194)
T ss_pred             EcCcccEe-Eeec------------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccC-cE
Confidence            99963222 1111                  126788999999999999874   467999999988887665 333 47


Q ss_pred             eEEEEeCCCCCEEEEeeC------CCeEEEEcCc
Q 010883          280 NTVCFGDESGHLIYSGSD------DNLCKVWDRR  307 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~------dg~i~vwd~~  307 (498)
                      +.++|+ |+|++|+++..      |+.++||+..
T Consensus       147 t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  147 TDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEEc-CCCCEEEEEEeccceeccccEEEEEec
Confidence            899998 88999998874      6888999983

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=7.7e-13  Score=130.05  Aligned_cols=199  Identities=22%  Similarity=0.311  Sum_probs=149.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe---eE--EEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883          236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV---NT--VCFGDESGHLIYSGSDDNLCKVWDRRCLN  310 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v---~~--~~~~~~~~~~l~s~s~dg~i~vwd~~~~~  310 (498)
                      .|....+..+...++.++.++.+.+||...+.....+. +...+   .+  +-++ .+.-++++|+.-+.|.+|+..   
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s-~~~~~i~~gsv~~~iivW~~~---  163 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDS-AEELYIASGSVFGEIIVWKPH---  163 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEecc-CcEEEEEeccccccEEEEecc---
Confidence            44555566677789999999999999998877665553 22211   11  1223 566789999999999999987   


Q ss_pred             CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883          311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ  390 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (498)
                       .......+.+|.+.|..+.++.||+++++.+.|..+++|++.+.....                               
T Consensus       164 -~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------------------  211 (967)
T KOG0974|consen  164 -EDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------------------  211 (967)
T ss_pred             -ccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------------------------
Confidence             222233788999999999999999999999999999999999854221                               


Q ss_pred             eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC-CCeeeeEEcCCCCeEEEEeCCC
Q 010883          391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                        .+.-+|+  ..+..+.    +.|+  .+++++.|.+.++|+. .++.+..+..|. ..|+.++..++...++|++.||
T Consensus       212 --~~~fgHs--aRvw~~~----~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  212 --CTGFGHS--ARVWACC----FLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             --ccccccc--ceeEEEE----eccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence              1233444  2333443    4335  8999999999999975 455666787776 5699999999999999999999


Q ss_pred             cEEEecCCCCCCC
Q 010883          470 DVVRWEFPGNGEA  482 (498)
Q Consensus       470 ~i~iw~~~~~~~~  482 (498)
                      .+++|++......
T Consensus       281 ~lk~~~l~~r~~e  293 (967)
T KOG0974|consen  281 TLKLWDLNGRGLE  293 (967)
T ss_pred             chhhhhhhccccc
Confidence            9999998766543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=2.8e-12  Score=126.20  Aligned_cols=201  Identities=18%  Similarity=0.221  Sum_probs=158.2

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCC-CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      .+.|....+.-+...++.++.+..+.+||...+....+.....- .-....-+.++++.-++++|+.-+.|.+|+....+
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            34444466777778899999999999999987754443321111 01123334567788899999999999999987221


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCCCeeEEEEeCCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES  288 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~  288 (498)
                      ...                ...||.+.|.++.|+.||+++++.+.|.++++|++++.+... ...+|...|..++|. ++
T Consensus       167 ~p~----------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n  229 (967)
T KOG0974|consen  167 KPI----------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN  229 (967)
T ss_pred             Ccc----------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc
Confidence            111                223789999999999999999999999999999999988766 566999999999997 44


Q ss_pred             CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc-cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                        .+++++.|-++++|+.     .+..+..+.+|.. .|..++..++...+++++.|+.+++||+...
T Consensus       230 --~i~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  230 --RIITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             --eeEEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence              8999999999999977     4666668888865 5899999999999999999999999998764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=3.7e-11  Score=112.82  Aligned_cols=286  Identities=16%  Similarity=0.197  Sum_probs=171.9

Q ss_pred             EEEEECC----CeEEEEEC--CCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----CCeEEEEECCCC--ceecc
Q 010883          146 FVAGFQA----SQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SPIVHIVDVGSG--TMESL  213 (498)
Q Consensus       146 la~~~~d----g~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----d~~i~iwd~~~~--~~~~~  213 (498)
                      +++|+..    +.|.+|++  +++. +...... ........++++|++++|.++..    ++.|..|++...  +...+
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~-l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~   79 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGT-LTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL   79 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTE-EEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCC-ceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence            4556555    68999888  4443 3222221 12225677899999999999877    468999888763  44333


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-CeeeEE--Eec-----------cCCC
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA-NKLSLR--ILA-----------HTSD  278 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~-~~~~~~--~~~-----------~~~~  278 (498)
                      ......              ......++++|++++|+++.. +|.|.++++.. +.....  ...           ....
T Consensus        80 ~~~~~~--------------g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h  145 (345)
T PF10282_consen   80 NSVPSG--------------GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH  145 (345)
T ss_dssp             EEEEES--------------SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred             eeeccC--------------CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence            222210              114567999999999998874 89999999987 433222  111           2345


Q ss_pred             eeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC
Q 010883          279 VNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKM  355 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~  355 (498)
                      ..++.++ |+++++++.. ....|.+|++......-.....+ .........+.|+|+++++++.. .++.|.++++...
T Consensus       146 ~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~  224 (345)
T PF10282_consen  146 PHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS  224 (345)
T ss_dssp             EEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence            6789997 7777766654 34589999986221111111222 23445688999999999886654 5678999988732


Q ss_pred             CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEEC
Q 010883          356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDL  434 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~  434 (498)
                      ......                           .+.+..+.......   .......++|||++|+++.. .+.|.+|++
T Consensus       225 ~g~~~~---------------------------~~~~~~~~~~~~~~---~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  225 DGSLTE---------------------------IQTISTLPEGFTGE---NAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             TTEEEE---------------------------EEEEESCETTSCSS---SSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             CCceeE---------------------------EEEeeecccccccc---CCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            110000                           00111110000000   01122357789999998775 678999998


Q ss_pred             C--CCc--EEEEeccCCCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCC
Q 010883          435 V--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG  478 (498)
Q Consensus       435 ~--~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~  478 (498)
                      .  +++  .+..+.......+.++++|+|++|+++. .++.|.+|+++.
T Consensus       275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            3  333  3444444445589999999999888776 667899998853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=4.6e-12  Score=116.24  Aligned_cols=285  Identities=15%  Similarity=0.178  Sum_probs=173.6

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-----------CCeE
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----------SPIV  200 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-----------d~~i  200 (498)
                      -.-+-+.|||-|.||++-...| |.+|--.+-..+++.    .|. .|.-+.|||..+||++-+.           ...+
T Consensus       211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF----~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF----YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc----cCC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence            3446789999999999998776 889976553333332    344 5899999999999998653           2479


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN  280 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~  280 (498)
                      .|||+.+|.....+........             .-.-..||.|++++|.-..+ +|.||+..+-.++-.-.-.-..|.
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~-------------~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr  350 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYL-------------KWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIR  350 (698)
T ss_pred             EEEEccccchhcceeccCCCcc-------------ccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCcccc
Confidence            9999999988776655321100             12236899999999887765 588988766433222222234455


Q ss_pred             EEEEeCCCCCEEEEeeCC----------------C-----------------------------------------eEEE
Q 010883          281 TVCFGDESGHLIYSGSDD----------------N-----------------------------------------LCKV  303 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~d----------------g-----------------------------------------~i~v  303 (498)
                      ...|+ |.+++||-=...                .                                         .+-|
T Consensus       351 ~Fsws-P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eI  429 (698)
T KOG2314|consen  351 DFSWS-PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEI  429 (698)
T ss_pred             CcccC-CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEE
Confidence            55665 334444321110                0                                         1111


Q ss_pred             EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883          304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ  380 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (498)
                      +.++.   ..-++.. ......|...+|-|.|..+++-+..   .++.+|.+.+.....                     
T Consensus       430 frire---KdIpve~-velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~---------------------  484 (698)
T KOG2314|consen  430 FRIRE---KDIPVEV-VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP---------------------  484 (698)
T ss_pred             EEeec---cCCCcee-eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch---------------------
Confidence            11110   0011111 1234667788999999888765543   468888877422111                     


Q ss_pred             cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe---cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883          381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP  457 (498)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp  457 (498)
                               ..+..+...        .+....|+|.|++++.+.   ..|.+.++|+.-..+...-.......+.+.|.|
T Consensus       485 ---------~lVk~~dk~--------~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP  547 (698)
T KOG2314|consen  485 ---------SLVKELDKK--------FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP  547 (698)
T ss_pred             ---------hhhhhhccc--------ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC
Confidence                     122222221        112335677899988764   478999999874333222212223467899999


Q ss_pred             CCCeEEEEeC------CCcEEEecCCCC
Q 010883          458 SQPMLVSSSW------DGDVVRWEFPGN  479 (498)
Q Consensus       458 ~~~~l~s~~~------Dg~i~iw~~~~~  479 (498)
                      .|++++|++.      |.--++|++.+.
T Consensus       548 tGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  548 TGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             CCCEEEEeeehhhhccccceEEEEeecH
Confidence            9999999875      455678888765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.50  E-value=5.4e-13  Score=115.26  Aligned_cols=207  Identities=17%  Similarity=0.197  Sum_probs=152.6

Q ss_pred             ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      -.....+++++.++++...|+.|-..|++.-+.+... ++.........|...|..+-|+-...++++.+.|..+.---.
T Consensus        64 ~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~  143 (404)
T KOG1409|consen   64 YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT  143 (404)
T ss_pred             hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence            3556788999999999999999999999999887653 122222334567789999999999999999999887654444


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeEEEeccCCCeeEEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~  283 (498)
                      +.+...........                 .+++.+.-.  +...|...|.|.+..+  ..-.++.++.+|.+.+.+++
T Consensus       144 e~~~~lg~Y~~~~~-----------------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~  204 (404)
T KOG1409|consen  144 ESGNRLGGYNFETP-----------------ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK  204 (404)
T ss_pred             ccCCcccceEeecc-----------------CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence            44443322222211                 111111111  4455656666665544  44556788889999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      |. +...+|++|..|..+.+||+-   ........+.+|...|..+..-+--+.+++++.||.|.+|+.+...
T Consensus       205 Wd-~~~~~LfSg~~d~~vi~wdig---g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  205 WD-PGQRLLFSGASDHSVIMWDIG---GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             Ec-CCCcEEEeccccCceEEEecc---CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            96 788899999999999999996   2334566788899999999888888899999999999999998744

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=3.4e-10  Score=106.39  Aligned_cols=283  Identities=18%  Similarity=0.227  Sum_probs=166.2

Q ss_pred             ceEEEEEcCCCCEEEEEEC----CCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECC
Q 010883          133 RAYVSQFSADGSLFVAGFQ----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVG  206 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~----dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~  206 (498)
                      ...-++++|++++|.+...    ++.|..|.+... ..+...............++++|++++|+++.. +|.|.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            3456789999999999877    468999988764 233332222212335678999999999999885 8899999998


Q ss_pred             C-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe--eeE--EEe-ccCCCe
Q 010883          207 S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK--LSL--RIL-AHTSDV  279 (498)
Q Consensus       207 ~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~--~~~--~~~-~~~~~v  279 (498)
                      . +.......... +.+.  .+...........++.|+|+|+++++... ...|++|++....  +..  .+. ......
T Consensus       118 ~~g~l~~~~~~~~-~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP  194 (345)
T PF10282_consen  118 DDGSLGEVVQTVR-HEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP  194 (345)
T ss_dssp             TTSEEEEEEEEEE-SEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred             CCcccceeeeecc-cCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence            7 44333322110 0000  00001111225788999999998887653 4579999997765  321  222 344667


Q ss_pred             eEEEEeCCCCCEEE-EeeCCCeEEEEcCccccCCCceeEEeccc------cccEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 010883          280 NTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNG-KDQAIKLWD  351 (498)
Q Consensus       280 ~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd  351 (498)
                      +.+.|+ +++++++ +...++.|.++++.........+......      ......|.++|||++|+++. ..+.|.+|+
T Consensus       195 Rh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~  273 (345)
T PF10282_consen  195 RHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD  273 (345)
T ss_dssp             EEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred             cEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence            899998 5666665 44567889999886221111222222111      12578899999999987765 456799999


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEE
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVY  430 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~  430 (498)
                      +.......                              ..+..+....  .    ......++|+|++|+++.. ++.|.
T Consensus       274 ~d~~~g~l------------------------------~~~~~~~~~G--~----~Pr~~~~s~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  274 LDPATGTL------------------------------TLVQTVPTGG--K----FPRHFAFSPDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             ECTTTTTE------------------------------EEEEEEEESS--S----SEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             EecCCCce------------------------------EEEEEEeCCC--C----CccEEEEeCCCCEEEEEecCCCeEE
Confidence            95421100                              1111111100  0    0123366789999998875 57899


Q ss_pred             EEEC--CCCcEEEEec-cCCCCeeeeEE
Q 010883          431 VYDL--VSGEQVAALK-YHTSPVRDCSW  455 (498)
Q Consensus       431 iwd~--~~~~~~~~~~-~h~~~v~~l~~  455 (498)
                      +|++  .+|.+...-. ..-....|+.|
T Consensus       318 vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  318 VFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            9876  4666543332 12334556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=1.6e-11  Score=119.54  Aligned_cols=193  Identities=21%  Similarity=0.152  Sum_probs=126.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCC--eEEEEcCccc
Q 010883          236 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDN--LCKVWDRRCL  309 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg--~i~vwd~~~~  309 (498)
                      .+.+.+|+|||++|+.+...   ..|++||+.+++.. .+..+...+.+++|+ ++++.|+ +.+.++  .|++||+.  
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~--  266 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD--  266 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC--
Confidence            57888999999999987654   47999999987653 344556667789998 6666554 555554  58888875  


Q ss_pred             cCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                        .+ ....+..+........|+|||+.|+..+. ++  .|.++|+....                              
T Consensus       267 --~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------------  313 (417)
T TIGR02800       267 --GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------------------------------  313 (417)
T ss_pred             --CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence              33 33444445455557789999998876654 33  47777765421                              


Q ss_pred             CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEE
Q 010883          387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV  463 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  463 (498)
                           ...+..+.      .....+.|+|+|++|+.++.++   .|++||+.++... .+... .......|+|++++|+
T Consensus       314 -----~~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~  380 (417)
T TIGR02800       314 -----VRRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMIL  380 (417)
T ss_pred             -----EEEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence                 11111111      1123457888999999988776   8999999886543 33222 2345678999999887


Q ss_pred             EEeCCC---cEEEecCCC
Q 010883          464 SSSWDG---DVVRWEFPG  478 (498)
Q Consensus       464 s~~~Dg---~i~iw~~~~  478 (498)
                      .++.++   .+.+.+...
T Consensus       381 ~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       381 YATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             EEEeCCCcEEEEEEECCC
Confidence            776654   355555444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.48  E-value=1.2e-11  Score=114.82  Aligned_cols=194  Identities=17%  Similarity=0.185  Sum_probs=156.7

Q ss_pred             cCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC------C--------------CCCeEEEEECCCe
Q 010883          140 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS------P--------------DQRHLVYASMSPI  199 (498)
Q Consensus       140 s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s------p--------------~~~~l~~~s~d~~  199 (498)
                      .|-+.++|....||.+++|+..++.....+.......+.-++..|.      |              |...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3456799999999999999999986655554444444455555552      2              2346777888999


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      |.+|++..++.......              ++|.+.|.++.++.+-..|.+++.|+.+..|+....+..+........+
T Consensus        82 v~~ys~~~g~it~~~st--------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~  147 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLST--------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV  147 (541)
T ss_pred             EEEEEecCCeEEEEEec--------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence            99999999887655442              2577799999999999999999999999999999999999998889999


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-----CCEEEEE-eCCCcEEEEeCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----GRYLISN-GKDQAIKLWDIR  353 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~s~-~~dg~i~iwd~~  353 (498)
                      .+++++ +++..+++++  +.|++||+.    ..+.+..+.+|.++|.+++|.-+     |.+++++ ..+..+.+|-++
T Consensus       148 ~sl~is-~D~~~l~~as--~~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  148 SSLCIS-PDGKILLTAS--RQIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             ceEEEc-CCCCEEEecc--ceEEEEEcc----CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            999998 7788998887  589999998    89999999999999999999876     6666654 445568888776


Q ss_pred             C
Q 010883          354 K  354 (498)
Q Consensus       354 ~  354 (498)
                      .
T Consensus       221 ~  221 (541)
T KOG4547|consen  221 K  221 (541)
T ss_pred             c
Confidence            5

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=1.9e-12  Score=111.96  Aligned_cols=276  Identities=15%  Similarity=0.229  Sum_probs=171.9

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccc--cCccccccCCCCceecEEEEEEcCCCC--EEEEEe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGS  253 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~~g~--~l~~g~  253 (498)
                      -|.++.|...|.+|++|..+|.|.++.-...... ........  ...+|..-..-.....|..+.|.+++.  .++..+
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            5889999999999999999999999975432210 11111000  000111000011223688999998664  677778


Q ss_pred             CCCeEEEEECCCCeee-----------------------------------EEE-eccCCCeeEEEEeCCCCCEEEEeeC
Q 010883          254 SDDCIYVYDLEANKLS-----------------------------------LRI-LAHTSDVNTVCFGDESGHLIYSGSD  297 (498)
Q Consensus       254 ~dg~i~vwd~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~~l~s~s~  297 (498)
                      .|.+|++|.+......                                   +.+ .+|...|+++.++ .+.+.++++ .
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lSA-D  183 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLSA-D  183 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEeec-c
Confidence            8999999987532110                                   000 1588889999998 777777665 5


Q ss_pred             CCeEEEEcCccccCCCceeEE----eccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883          298 DNLCKVWDRRCLNVKGKPAGV----LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY  372 (498)
Q Consensus       298 dg~i~vwd~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  372 (498)
                      |=.|.+|.+...+.....+-.    +.....-|++..|+|. .+.++-.+..|+|++-|+|....-...           
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h-----------  252 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH-----------  252 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch-----------
Confidence            789999998744322222211    1223456888999995 567888889999999999953211000           


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC-CCcEEEEeccCC----
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHT----  447 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~----  447 (498)
                              ...+..+.+..-     .+....+++......||++|+|+++-.. -+|++||+. ..+++.+++.|.    
T Consensus       253 --------sKlfEepedp~~-----rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  253 --------SKLFEEPEDPSS-----RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             --------hhhhccccCCcc-----hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence                    000000000000     0111112222334467889999998765 469999994 456777766553    


Q ss_pred             --------CCe---eeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          448 --------SPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       448 --------~~v---~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                              ..|   ..++|+-++.+++||+....+++++...+..
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence                    223   4579999999999999999999999665543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=5.3e-11  Score=114.58  Aligned_cols=242  Identities=12%  Similarity=0.101  Sum_probs=144.2

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe--EEEEEC-C--CeEEEEECCCCceeccccccccccCccccc
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSA  227 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~s~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (498)
                      +.|.+.|.+.+.. ..+.   .....+..-+|+|||+.  ++..+. +  ..|.+.++.+++...+.....         
T Consensus       165 ~~l~~~d~dG~~~-~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---------  231 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---------  231 (428)
T ss_pred             ceEEEEcCCCCCc-eEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------
Confidence            3677777765532 2221   12335677899999975  322333 3  368888998876544433221         


Q ss_pred             cCCCCceecEEEEEEcCCCCEEEEEeC-CC--eE--EEEECCCC--eeeEEEec-cCCCeeEEEEeCCCCCEEEEee-CC
Q 010883          228 ADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CI--YVYDLEAN--KLSLRILA-HTSDVNTVCFGDESGHLIYSGS-DD  298 (498)
Q Consensus       228 ~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg--~i--~vwd~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s-~d  298 (498)
                              .....+|+|||+.|+..+. +|  .+  .+|++..+  .....+.. +.......+|+ |+++.|+..+ .+
T Consensus       232 --------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~  302 (428)
T PRK01029        232 --------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKD  302 (428)
T ss_pred             --------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCC
Confidence                    3446799999998887653 22  33  44677653  12233332 23345678998 7777666554 56


Q ss_pred             CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceee
Q 010883          299 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM  375 (498)
Q Consensus       299 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  375 (498)
                      |...+|.+.... .+.....+..+...+....|+|||+.|+..+.+   ..|.+||+.+...                  
T Consensus       303 g~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------------  363 (428)
T PRK01029        303 GRPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------------  363 (428)
T ss_pred             CCceEEEEECcc-cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------------------
Confidence            765565442110 122234444455567788999999998876543   3689999876321                  


Q ss_pred             cCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCCCcEEEEeccCCCCeee
Q 010883          376 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRD  452 (498)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~  452 (498)
                                       ..+....      .....+.|+|||+.|+....   ...|+++|+..++...... ..+.+..
T Consensus       364 -----------------~~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~  419 (428)
T PRK01029        364 -----------------YQLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRF  419 (428)
T ss_pred             -----------------EEccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccC
Confidence                             1111110      01134578889998876543   3579999998877544433 4556778


Q ss_pred             eEEcCCC
Q 010883          453 CSWHPSQ  459 (498)
Q Consensus       453 l~~sp~~  459 (498)
                      .+|+|-.
T Consensus       420 p~Ws~~~  426 (428)
T PRK01029        420 PSWGAFP  426 (428)
T ss_pred             ceecCCC
Confidence            8998754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=8.5e-10  Score=100.99  Aligned_cols=278  Identities=14%  Similarity=0.093  Sum_probs=167.8

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----------CCeEEEEECCCCceeccccccccccC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----------d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      ++|.|.|..+++.+.........    ..+ ++||++.|.++..          +..|.+||..+.+......+....+.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P----~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP----NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF  101 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC----cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence            88999999998666655433322    224 8999998887765          67999999999988766654432110


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-S-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL  300 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~  300 (498)
                      .         .......++++|||++|++.. . +..|.+.|+.+++.+..+.-- +...-+..+ +...+  +-+.||.
T Consensus       102 ~---------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~-e~~~~--~~~~Dg~  168 (352)
T TIGR02658       102 L---------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTA-NDTFF--MHCRDGS  168 (352)
T ss_pred             h---------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEec-CCccE--EEeecCc
Confidence            0         011344689999999998776 3 689999999999998887642 221222221 22222  3334555


Q ss_pred             EEEEcCccccCCCce-eE---EeccccccEE-EEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccccee
Q 010883          301 CKVWDRRCLNVKGKP-AG---VLMGHLEGIT-FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW  374 (498)
Q Consensus       301 i~vwd~~~~~~~~~~-~~---~~~~~~~~v~-~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  374 (498)
                      .....+..   .++. ..   .+.....++. .-.+.+ +|+++.+... |.|.+.|+........              
T Consensus       169 ~~~v~~d~---~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~--------------  230 (352)
T TIGR02658       169 LAKVGYGT---KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL--------------  230 (352)
T ss_pred             eEEEEecC---CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec--------------
Confidence            54443331   1111 00   1111000000 003344 7887776666 9999999765321110              


Q ss_pred             ecCCcCcccccCCCCceEEEEccCc---eeEEEEEEEeccccCCCCcEEEEEec----------CCeEEEEECCCCcEEE
Q 010883          375 MDYPPQARDLKHPCDQSVATYKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVA  441 (498)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~  441 (498)
                                     ..+..+....   ..... . .--.+++++++.+++...          .+.|.++|..+++.+.
T Consensus       231 ---------------~~~~~~~~~~~~~~wrP~-g-~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~  293 (352)
T TIGR02658       231 ---------------PAIEAFTEAEKADGWRPG-G-WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR  293 (352)
T ss_pred             ---------------ceeeeccccccccccCCC-c-ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence                           1111110000   00000 0 000356778888887532          2579999999999999


Q ss_pred             EeccCCCCeeeeEEcCCCC-eEEEEe-CCCcEEEecCCCCCCCCC
Q 010883          442 ALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~-~l~s~~-~Dg~i~iw~~~~~~~~~~  484 (498)
                      .+.. ...+..++++||++ +|++.. .++.|.+.|..+.+....
T Consensus       294 ~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       294 KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence            8873 45789999999999 777666 678899999988765443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.4e-11  Score=114.31  Aligned_cols=150  Identities=17%  Similarity=0.202  Sum_probs=108.9

Q ss_pred             CCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE------cC--------------
Q 010883          185 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF------ST--------------  244 (498)
Q Consensus       185 sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~------s~--------------  244 (498)
                      .|...++|....||.+++|+...++....+.....-.+             ..++..|      +|              
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~-------------t~~~~~w~L~~~~s~~k~~~~~~~~~~s~   68 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG-------------TCTYTKWGLSADYSPMKWLSLEKAKKASL   68 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccC-------------cceeEEEEEEeccchHHHHhHHHHhhccC
Confidence            34567899999999999999998877555443322111             2223322      22              


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc
Q 010883          245 DGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH  322 (498)
Q Consensus       245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  322 (498)
                      |-..++-|...|.|.+|++..++....+.  .|.+.|+++.++ .+-..|.+++.|+.+..|+..    ....++.+...
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~----~~~~~~~~~~~  143 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEK----EKVIIRIWKEQ  143 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecc----cceeeeeeccC
Confidence            33467888899999999999999888876  699999999997 777899999999999999987    66666666666


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          323 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       323 ~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      ...+.+++.+||+..+++++  ++|++||+.+
T Consensus       144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~  173 (541)
T KOG4547|consen  144 KPLVSSLCISPDGKILLTAS--RQIKVLDIET  173 (541)
T ss_pred             CCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence            66666777777666666554  2355555444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=8.5e-11  Score=114.08  Aligned_cols=194  Identities=18%  Similarity=0.166  Sum_probs=121.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCCe--EEEEcCccc
Q 010883          236 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCL  309 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~  309 (498)
                      .+.+..|+|||+.|+..+.+   ..|++||+.+++.. .+....+......|+ ++++.|+ +.+.+|.  |+++|+.  
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~--  294 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIA--  294 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECC--
Confidence            67889999999998876543   36999999887653 333333444578998 6676554 5566775  6777775  


Q ss_pred             cCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                        .+ ....+..+........|+|||+.|+..+. ++  .|.++|+.+...                             
T Consensus       295 --tg-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-----------------------------  342 (448)
T PRK04792        295 --TK-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-----------------------------  342 (448)
T ss_pred             --CC-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------------------------
Confidence              33 34445555556678899999998876553 34  466666654210                             


Q ss_pred             CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-C--eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEE
Q 010883          387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV  463 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  463 (498)
                         ..+ ++.+..        ...+.|+|||++|+..+.+ +  .|.++|+.+++.. .+... .......|+|||+.|+
T Consensus       343 ---~~L-t~~g~~--------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~  408 (448)
T PRK04792        343 ---SRL-TFEGEQ--------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVI  408 (448)
T ss_pred             ---EEE-ecCCCC--------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence               001 111111        1245788899998876653 3  5677888887653 33322 1233568999999776


Q ss_pred             EEeC-CCc--EEEecCCCC
Q 010883          464 SSSW-DGD--VVRWEFPGN  479 (498)
Q Consensus       464 s~~~-Dg~--i~iw~~~~~  479 (498)
                      ..+. +|.  +.+++.++.
T Consensus       409 ~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        409 YSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             EEEecCCceEEEEEECCCC
Confidence            6554 443  666776544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.2e-10  Score=113.42  Aligned_cols=195  Identities=21%  Similarity=0.180  Sum_probs=125.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCC--eEEEEcCccc
Q 010883          236 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDN--LCKVWDRRCL  309 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg--~i~vwd~~~~  309 (498)
                      .+....|+|||+.|+..+.+   ..|++||+.+++.. .+....+.+....|+ |+++.|+ +.+.+|  .|++||+.  
T Consensus       200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~--  275 (430)
T PRK00178        200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLA--  275 (430)
T ss_pred             ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEEC-CCCCEEEEEEccCCCceEEEEECC--
Confidence            68899999999999877643   46999999888653 343444555678998 6676665 555555  58888886  


Q ss_pred             cCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                        .+ ....+..+........|+|||+.|+..+. ++  .|+++|+.+...                             
T Consensus       276 --~~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-----------------------------  323 (430)
T PRK00178        276 --SR-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-----------------------------  323 (430)
T ss_pred             --CC-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------------------------
Confidence              33 33445555556667889999998876653 33  466677655221                             


Q ss_pred             CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-C--eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEE
Q 010883          387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV  463 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  463 (498)
                         ..+ .+.+.        ....+.|+|||++|+..+.+ +  .|++||+.+++... +. +........|+|||++|+
T Consensus       324 ---~~l-t~~~~--------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~  389 (430)
T PRK00178        324 ---ERV-TFVGN--------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLI  389 (430)
T ss_pred             ---EEe-ecCCC--------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEE
Confidence               000 11111        11235688899999887653 3  58899998876533 32 222334568999999887


Q ss_pred             EEeCC-C--cEEEecCCCCC
Q 010883          464 SSSWD-G--DVVRWEFPGNG  480 (498)
Q Consensus       464 s~~~D-g--~i~iw~~~~~~  480 (498)
                      .++.+ |  .|.++++.+..
T Consensus       390 ~~~~~~g~~~l~~~~~~g~~  409 (430)
T PRK00178        390 YATRQQGRGVLMLVSINGRV  409 (430)
T ss_pred             EEEecCCceEEEEEECCCCc
Confidence            66543 3  46667775443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=1.8e-12  Score=133.67  Aligned_cols=221  Identities=17%  Similarity=0.197  Sum_probs=166.5

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ..|.++.=+|...+.++|+.||.|++|....++.+..+....              . ..|+.+.|+.+|+.+..+..||
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------------~-s~vtr~~f~~qGnk~~i~d~dg 2273 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------------N-SRVTRSRFNHQGNKFGIVDGDG 2273 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--------------c-chhhhhhhcccCCceeeeccCC
Confidence            368888888999999999999999999998887665554332              1 4799999999999999999999


Q ss_pred             eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      .+.+|.+. .++......|......+.|. .  ..+++++   .++.+.+||....   +..-..-..|.+.++++++-|
T Consensus      2274 ~l~l~q~~-pk~~~s~qchnk~~~Df~Fi-~--s~~~tag~s~d~~n~~lwDtl~~---~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2274 DLSLWQAS-PKPYTSWQCHNKALSDFRFI-G--SLLATAGRSSDNRNVCLWDTLLP---PMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred             ceeecccC-CcceeccccCCccccceeee-e--hhhhccccCCCCCcccchhcccC---cccceeeeecCCCceEEEEcC
Confidence            99999987 66777778899999999997 2  5666664   4689999997522   222222378999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      ..+.|++|+.+|.|++||++..                                  +.++++..               +
T Consensus      2347 ~~qllisggr~G~v~l~D~rqr----------------------------------ql~h~~~~---------------~ 2377 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQR----------------------------------QLRHTFQA---------------L 2377 (2439)
T ss_pred             cceEEEecCCcCcEEEeehHHH----------------------------------HHHHHhhh---------------h
Confidence            9999999999999999999873                                  23333332               1


Q ss_pred             CCCCcEEEEEecCCeEEEEECCCCcEEEEecc---CCCC--e--eeeEEcCCCCeEEEEeCCCc
Q 010883          414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSP--V--RDCSWHPSQPMLVSSSWDGD  470 (498)
Q Consensus       414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~--v--~~l~~sp~~~~l~s~~~Dg~  470 (498)
                      . ...++++|+..|.++||++..-..+..+..   |.+-  .  ..+... ....|.+|+.||+
T Consensus      2378 ~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2378 D-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred             h-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence            1 356899999999999999988877776652   2211  0  112222 2346777777764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=5.1e-11  Score=112.72  Aligned_cols=287  Identities=11%  Similarity=0.108  Sum_probs=192.3

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------------EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP  198 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~  198 (498)
                      .....|++|+....++|+|+.||.++|..+.+..            .+.......+|...|.-+.|+.+.+.|-++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4567899999999999999999999999886531            1111234568999999999999999999999999


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTS  277 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~  277 (498)
                      .|.+|-+-.+.........              ....-|.+++|+.||..+.....||.|.|=.+..++... .+.+  .
T Consensus        94 lIiVWmlykgsW~EEMiNn--------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~  157 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINN--------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--Q  157 (1189)
T ss_pred             eEEEEeeecccHHHHHhhC--------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--h
Confidence            9999998877653221111              123369999999999999999999999887776554321 1111  2


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc---CCCceeE----EeccccccEEEEEEc--------CCCCEEEEEe
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---VKGKPAG----VLMGHLEGITFIDSR--------GDGRYLISNG  342 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~----~~~~~~~~v~~l~~~--------~~~~~l~s~~  342 (498)
                      ....+.|+ ++.+.++.+-..|.+.+||....-   ....+..    .+......|..+.|.        ||...|+++.
T Consensus       158 ~l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  158 LLAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             eccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence            23468898 777788888889999999974110   0000100    111112224455553        5778899999


Q ss_pred             CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      .+|.+.|..-.+...                                 ++..-.+    -.+    ....|+++|..|++
T Consensus       237 ~nGr~QiMR~eND~~---------------------------------Pvv~dtg----m~~----vgakWnh~G~vLAv  275 (1189)
T KOG2041|consen  237 ANGRMQIMRSENDPE---------------------------------PVVVDTG----MKI----VGAKWNHNGAVLAV  275 (1189)
T ss_pred             cCceehhhhhcCCCC---------------------------------CeEEecc----cEe----ecceecCCCcEEEE
Confidence            999888765444211                                 1111111    011    22357779999999


Q ss_pred             EecC---------CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          423 GSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       423 g~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ++.+         +.|.+|. .-|+.+.+++.....|++++|-..|-.++.+ .|+.|++=++.
T Consensus       276 cG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR  337 (1189)
T KOG2041|consen  276 CGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR  337 (1189)
T ss_pred             ccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence            8764         2566665 3578888888888899999997666555544 35665554443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.40  E-value=2.5e-12  Score=121.77  Aligned_cols=302  Identities=17%  Similarity=0.247  Sum_probs=193.5

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC--CeEEEEECCCeEEEEECCCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~s~d~~i~iwd~~~~  208 (498)
                      ..++.++.++|.|+-+|.++.-| +.+-|+......... ..+...+.|-.+.|+|..  .+-++......-.+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRW-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCcee-eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            56788899999999999998877 556777664222222 223345678888999854  34444445556678988643


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee-eEEEeccCCCeeEEEEeC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~  286 (498)
                      ....+.-.             ..||+..|+.+.|+|+.. .+++++.|..+..||+++... +.....-......++|+-
T Consensus       102 s~~aIef~-------------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny  168 (1081)
T KOG0309|consen  102 SSNAIEFV-------------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY  168 (1081)
T ss_pred             CccceEEE-------------EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence            32221111             127888999999999654 788899999999999988653 333334445668899986


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGF  365 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  365 (498)
                      .+++.++ .+....|++||++   ....++..+++|...|+.++|..- ...+.+.+.|++|+.||..+...........
T Consensus       169 k~p~vla-sshg~~i~vwd~r---~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt  244 (1081)
T KOG0309|consen  169 KDPNVLA-SSHGNDIFVWDLR---KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT  244 (1081)
T ss_pred             cCcchhh-hccCCceEEEecc---CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence            6666664 4566789999998   345678888899999999998652 3468899999999999998744322221111


Q ss_pred             ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC-CcEEEEec
Q 010883          366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALK  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~  444 (498)
                      ....|..+.+++..         +..+.                   +...+..+..---+.....|+..+ .++++++.
T Consensus       245 ~~piw~~r~~Pfg~---------g~~~m-------------------p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~  296 (1081)
T KOG0309|consen  245 NFPIWRGRYLPFGE---------GYCIM-------------------PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV  296 (1081)
T ss_pred             cCcceeccccccCc---------eeEec-------------------cccCCeeeeeccccchhhhhccccCCcceeeec
Confidence            11122111111100         00000                   000111111111122233444444 36789999


Q ss_pred             cCCCCeeeeEEcCC--------CC--eEEEEeCCCcEEEecCCCC
Q 010883          445 YHTSPVRDCSWHPS--------QP--MLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       445 ~h~~~v~~l~~sp~--------~~--~l~s~~~Dg~i~iw~~~~~  479 (498)
                      +|.+.|...-|-..        .+  .|+|-+.|..+++|-+...
T Consensus       297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            99999888777542        22  7999999999999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.40  E-value=5.4e-11  Score=100.97  Aligned_cols=207  Identities=18%  Similarity=0.177  Sum_probs=143.3

Q ss_pred             CCceEEEEEcC---CCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          131 TSRAYVSQFSA---DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       131 ~~~v~~~~~s~---dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      .+.++.+.|.-   +|. .|+-+-.+|.|.+|..........+.......-   ...++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            45566666654   444 566677789999998765533333322222221   24577899999999999999999866


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeeeEE-EeccCCCee
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE-ANKLSLR-ILAHTSDVN  280 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~-~~~~~~~-~~~~~~~v~  280 (498)
                      +............              .+|..++..+.|+. +.+.+.+|+.|+.+..||++ .++.+.. ...|...|.
T Consensus       149 ~~t~~~le~vq~w--------------k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~  214 (339)
T KOG0280|consen  149 YETEMVLEKVQTW--------------KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV  214 (339)
T ss_pred             ecceeeeeecccc--------------cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence            6555444332222              25777899999986 44688999999999999998 3344433 457899999


Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC
Q 010883          281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~  355 (498)
                      +|.-+|+.+.++++|+.|-.|++||.|..   ++++..-. -.++|..+.++|.-. .++.+++-.-.+|-+....
T Consensus       215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm---~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  215 SIYSSPPKPTYIATGSYDECIRVLDTRNM---GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             EEecCCCCCceEEEeccccceeeeehhcc---cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            99999999999999999999999999833   33333222 348899999998532 2334444444777777653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=1.7e-09  Score=95.19  Aligned_cols=279  Identities=16%  Similarity=0.198  Sum_probs=175.7

Q ss_pred             CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCC--CceeccccccccccCcccc
Q 010883          152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGS--GTMESLANVTEIHDGLDFS  226 (498)
Q Consensus       152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~  226 (498)
                      +.-|.+|++++...-......-.....++-++|+|+++.|.++..+   |.|..|.++.  |+...+-.....       
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~-------   87 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP-------   87 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-------
Confidence            4569999998532222222333445578999999999999887654   6677777764  554333222211       


Q ss_pred             ccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Ceee--EEEeccCCC----------eeEEEEeCCCCCEE
Q 010883          227 AADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA-NKLS--LRILAHTSD----------VNTVCFGDESGHLI  292 (498)
Q Consensus       227 ~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~~l  292 (498)
                             ..+...++++++|++++++.. .|.|.++-+.. |.+.  .....|.+.          +....+. |++++|
T Consensus        88 -------g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l  159 (346)
T COG2706          88 -------GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYL  159 (346)
T ss_pred             -------CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEE
Confidence                   113478999999999998875 57899998865 3322  122345544          7788886 788888


Q ss_pred             EEeeC-CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccc
Q 010883          293 YSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       293 ~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      ++.+- .-.|.+|++............+ ....+...|.|+|++++....+ -+++|-+|...........         
T Consensus       160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~---------  229 (346)
T COG2706         160 VVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE---------  229 (346)
T ss_pred             EEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE---------
Confidence            77653 3478999997332222222222 3445678999999999887655 4889999998874111000         


Q ss_pred             cceeecCCcCcccccCCCCceEEE----EccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCC--CcE--EE
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVAT----YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS--GEQ--VA  441 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~--~~~--~~  441 (498)
                                        -+.+.+    |.+..   ..    -...+++||++|+++.. ...|.+|.+..  +++  +.
T Consensus       230 ------------------lQ~i~tlP~dF~g~~---~~----aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~  284 (346)
T COG2706         230 ------------------LQTIDTLPEDFTGTN---WA----AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG  284 (346)
T ss_pred             ------------------eeeeccCccccCCCC---ce----eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence                              011111    11111   11    12246779999999865 34788887754  332  22


Q ss_pred             EeccCCCCeeeeEEcCCCCeEEEEeCC-CcEEEecCCCCC
Q 010883          442 ALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFPGNG  480 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~~l~s~~~D-g~i~iw~~~~~~  480 (498)
                      ....+...-++..++|.+++|+.+..| ..|.+|..+...
T Consensus       285 ~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         285 ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            223444557899999999998888754 468888876543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.39  E-value=2.3e-11  Score=103.96  Aligned_cols=269  Identities=17%  Similarity=0.259  Sum_probs=171.2

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCC------------ceeEEEEEeCCCC--CeEEEE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSL------------RWTVTDTSLSPDQ--RHLVYA  194 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~------------~~~v~~~~~sp~~--~~l~~~  194 (498)
                      ...|+++.|...|.||++|...|.|.+|.-+...  ...-....++|            ...|..+.|-.++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5679999999999999999999999999865432  01111112222            2368888887654  356667


Q ss_pred             ECCCeEEEEECCCCceeccccccccccCccc--------------------------ccc--CCCCceecEEEEEEcCCC
Q 010883          195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDF--------------------------SAA--DDGGYSFGIFSLKFSTDG  246 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--------------------------~~~--~~~~h~~~i~~~~~s~~g  246 (498)
                      +.|.+|++|.+.......+.. ....++..+                          .+.  ....|...|.++.|+.|.
T Consensus       106 tNdktiKlWKiyeknlk~va~-nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAE-NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhc-cccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            789999999986553211111 000000000                          000  124688899999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeee---EEEeccC-----CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc----
Q 010883          247 RELVAGSSDDCIYVYDLEANKLS---LRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK----  314 (498)
Q Consensus       247 ~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~-----~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----  314 (498)
                      ..++++. |=.|.+|+++-....   ..+..|.     .-|++..|+|...+.+.-.+..|.|++-|+|....-..    
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            8888764 667999988754322   2233343     45788999988888888899999999999982211011    


Q ss_pred             --------eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          315 --------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       315 --------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                              ...-+.+-...|..+.|+++|++|++-.. -+|+|||++....                             
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~-----------------------------  313 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN-----------------------------  313 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC-----------------------------
Confidence                    11112233456788999999999987654 4799999987442                             


Q ss_pred             CCCceEEEEccCcee---------EEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          387 PCDQSVATYKGHSVL---------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                          ++.+..-|...         ...+--.|...||.|.+.+++|+..+..-+|-+.
T Consensus       314 ----pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         314 ----PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             ----CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                23333222110         1112223445677788888888888777777643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.8e-10  Score=110.98  Aligned_cols=209  Identities=16%  Similarity=0.124  Sum_probs=127.4

Q ss_pred             CccccCCCCceEEEEEcCCCCEEE---EEECCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-C
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFV---AGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S  197 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la---~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d  197 (498)
                      +..+......+..-+|||||+.++   +...+|  .|.+.++.++.... +...   .+.....+|+|||+.|+..+. +
T Consensus       177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~---~g~~~~p~wSPDG~~Laf~s~~~  252 (428)
T PRK01029        177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILAL---QGNQLMPTFSPRKKLLAFISDRY  252 (428)
T ss_pred             ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecC---CCCccceEECCCCCEEEEEECCC
Confidence            344555667778889999997532   333343  58888888774322 2222   224556899999999987663 2


Q ss_pred             C----eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCe--EEEEECCC-Ceee
Q 010883          198 P----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEA-NKLS  269 (498)
Q Consensus       198 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~--i~vwd~~~-~~~~  269 (498)
                      |    .+.+|++..+.......+...             +.......+|+|||+.|+..+ .+|.  |+++++.. +...
T Consensus       253 g~~di~~~~~~~~~g~~g~~~~lt~~-------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        253 GNPDLFIQSFSLETGAIGKPRRLLNE-------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             CCcceeEEEeecccCCCCcceEeecC-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence            2    344567665321111111100             001234679999999888766 3554  55555542 2334


Q ss_pred             EEEeccCCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC---
Q 010883          270 LRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---  343 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---  343 (498)
                      ..+..+...+....|+ |+++.|+..+.+   ..|.+||+.    .++. ..+......+....|+|||+.|+....   
T Consensus       320 ~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~----~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g  393 (428)
T PRK01029        320 RLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLA----TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSN  393 (428)
T ss_pred             EEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECC----CCCe-EEccCCCCCccceEECCCCCEEEEEECCCC
Confidence            4555555677889998 778877765543   368999986    3333 334333345677899999998875443   


Q ss_pred             CCcEEEEeCCCC
Q 010883          344 DQAIKLWDIRKM  355 (498)
Q Consensus       344 dg~i~iwd~~~~  355 (498)
                      ...|.++|+...
T Consensus       394 ~~~L~~vdl~~g  405 (428)
T PRK01029        394 ESELYLISLITK  405 (428)
T ss_pred             CceEEEEECCCC
Confidence            346888888763

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=6.6e-12  Score=129.67  Aligned_cols=193  Identities=11%  Similarity=0.187  Sum_probs=148.0

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      ..+-..|.++.=+|.-.+.+||+.||.|++|....+..+........  ..|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCC
Confidence            44566788888899999999999999999999988866655443332  6899999999999999999999999999872


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCe-eeEEEeccCCCeeEEE
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEANK-LSLRILAHTSDVNTVC  283 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~---~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~  283 (498)
                      .-..   .              ...|.....+++|..  ..+++++   .++.+.+||..-.. .-..-..|.+.+++++
T Consensus      2283 k~~~---s--------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2283 KPYT---S--------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred             ccee---c--------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence            1111   0              113555677777765  4566654   46889999964321 1112268999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      +. |..++|++|+.+|.|++||++    ..+..+.++.         +. ...+|++++..|.++||++....
T Consensus      2344 ~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2344 YA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             Ec-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence            98 788999999999999999998    6555555543         34 55789999999999999998754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.34  E-value=3.3e-09  Score=96.12  Aligned_cols=175  Identities=18%  Similarity=0.151  Sum_probs=133.4

Q ss_pred             EcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC-eEEEEECCCCceeccccc
Q 010883          139 FSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESLANV  216 (498)
Q Consensus       139 ~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~-~i~iwd~~~~~~~~~~~~  216 (498)
                      |++ +|.++|..+. |...|.+...+..++     -++.+.|.-..+.-+++-++.|..|| .+-|+|..+++.......
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~  400 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD  400 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE-----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence            444 6788888865 567777766663333     24555788888988888999999999 899999999886544332


Q ss_pred             cccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee
Q 010883          217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS  296 (498)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s  296 (498)
                                       -+.|.++..+++|++++++.....|.+.|+.++.....-....+-|+.+.|+ ++++++|-+-
T Consensus       401 -----------------lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYaf  462 (668)
T COG4946         401 -----------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAF  462 (668)
T ss_pred             -----------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEec
Confidence                             1269999999999999999999999999999998765555677889999998 8899999877


Q ss_pred             CCC----eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883          297 DDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       297 ~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      -+|    .|+++|+.    .++ +.........-.+-+|.||+++|.--+
T Consensus       463 P~gy~tq~Iklydm~----~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         463 PEGYYTQSIKLYDMD----GGK-IYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CcceeeeeEEEEecC----CCe-EEEecCCcccccCcccCCCCcEEEEEe
Confidence            665    68999995    333 333333444445678999999887554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.34  E-value=6.4e-09  Score=108.34  Aligned_cols=328  Identities=16%  Similarity=0.189  Sum_probs=189.0

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEE----ECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw----~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ...+.|.++.|-+|...++.+..+|.|.+.    +..+. .+...   ......|.+++||||+..|+.++.++++.+.+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            446789999999999999999999999999    55443 12211   22334799999999999999999998887764


Q ss_pred             CCCCceeccccccccc-------------cCccccc----------------cCCCC---ceecEEEEEEcCCCCEEEEE
Q 010883          205 VGSGTMESLANVTEIH-------------DGLDFSA----------------ADDGG---YSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~-------------~~~~~~~----------------~~~~~---h~~~i~~~~~s~~g~~l~~g  252 (498)
                      .. -.......+....             ...+|..                ..+.+   +...-..++|-.||.++|+.
T Consensus       149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs  227 (928)
T PF04762_consen  149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS  227 (928)
T ss_pred             cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence            21 1111110000000             0000000                00001   33456779999999999988


Q ss_pred             eC---C---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC---CCeEEEEcCccccCCCceeEEecccc
Q 010883          253 SS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHL  323 (498)
Q Consensus       253 ~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~  323 (498)
                      +.   .   ..|+||+-+ |.+...-..-.+--.+++|. |.|++|++...   ...|.+|..+... .+.....+....
T Consensus       228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~  304 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEE  304 (928)
T ss_pred             EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCC
Confidence            74   2   579999976 55544443334445678996 88999988765   3567777764221 122222222345


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceee-cCCcCcc---cccCCCC-ceEEEEccC
Q 010883          324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM-DYPPQAR---DLKHPCD-QSVATYKGH  398 (498)
Q Consensus       324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~-~~~~~~~~~  398 (498)
                      ..|..+.|++|+..||....|. |.+|-..+..             |..+.. .++....   ...++.. ..+..+...
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~  370 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN  370 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------------EEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence            6799999999999999977665 9999887632             111110 0110000   0011111 112222111


Q ss_pred             ceeEEEEEEEe----ccccCCCCcEEEEEecCCeEEEEECCCCcE-----EEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          399 SVLRTLIRCHF----SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       399 ~~~~~~~~~~~----~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                      . ........|    ++..+|+..-++..-....+.+-.++....     ...+. -..+|.+++|++++..+++-..||
T Consensus       371 g-~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  371 G-QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             C-cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCC
Confidence            1 011112222    222223222222222223455555543321     12332 357899999999998899999999


Q ss_pred             cEEEecCCCCC
Q 010883          470 DVVRWEFPGNG  480 (498)
Q Consensus       470 ~i~iw~~~~~~  480 (498)
                      .|.+|......
T Consensus       449 ~l~~~~~~~~~  459 (928)
T PF04762_consen  449 SLSIYEWDLKN  459 (928)
T ss_pred             CEEEEEecCCC
Confidence            99999866544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.34  E-value=1.1e-08  Score=93.84  Aligned_cols=245  Identities=15%  Similarity=0.164  Sum_probs=146.1

Q ss_pred             EcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeecCC-C---ceeEEEEEeCCCCCeEEEEEC--CCeEEE
Q 010883          139 FSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS-L---RWTVTDTSLSPDQRHLVYASM--SPIVHI  202 (498)
Q Consensus       139 ~s~dg~~la~~~~----------dg~i~vw~~~~~~~~~~~~~~~~-~---~~~v~~~~~sp~~~~l~~~s~--d~~i~i  202 (498)
                      +||||+.|+++..          +..|.+||..+.+.+..+..... +   ......++++|||++|++...  ++.|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998887665          67899999999977776654322 1   123447899999999998763  689999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ceee-EEEe-ccC--C
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLS-LRIL-AHT--S  277 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~-~~~~-~~~--~  277 (498)
                      .|+.+++.......+..                 ..-...+++.. + +-+.||......+.+ ++.. .... .+.  .
T Consensus       133 vD~~~~kvv~ei~vp~~-----------------~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~  193 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDC-----------------YHIFPTANDTF-F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE  193 (352)
T ss_pred             EECCCCcEEEEEeCCCC-----------------cEEEEecCCcc-E-EEeecCceEEEEecCCCceEEeeeeeecCCcc
Confidence            99999988765554321                 11111211211 1 112333333322221 1111 1100 011  0


Q ss_pred             Cee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccC-CCceeEEecc-------ccccEEEEEEcCCCCEEEEEeC-----
Q 010883          278 DVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGK-----  343 (498)
Q Consensus       278 ~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~-----  343 (498)
                      ++. .-.|.+.++.+++.... |+|.+.|+..... .......+..       ..+.+.-++++|+++.+++...     
T Consensus       194 ~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~  272 (352)
T TIGR02658       194 YLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW  272 (352)
T ss_pred             ccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence            000 00445457777777666 9999999642211 1122222211       2234455999999998887431     


Q ss_pred             -----CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc
Q 010883          344 -----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK  418 (498)
Q Consensus       344 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  418 (498)
                           .+.|.++|..+.                                  +.+..+....       ..+..+++||++
T Consensus       273 thk~~~~~V~ViD~~t~----------------------------------kvi~~i~vG~-------~~~~iavS~Dgk  311 (352)
T TIGR02658       273 THKTASRFLFVVDAKTG----------------------------------KRLRKIELGH-------EIDSINVSQDAK  311 (352)
T ss_pred             cccCCCCEEEEEECCCC----------------------------------eEEEEEeCCC-------ceeeEEECCCCC
Confidence                 246888998773                                  3333333211       234557888999


Q ss_pred             -EEEEEe-cCCeEEEEECCCCcEEEEec
Q 010883          419 -YIYTGS-HDSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       419 -~l~~g~-~dg~i~iwd~~~~~~~~~~~  444 (498)
                       +|++.+ .++.|.++|+.+++.+..+.
T Consensus       312 p~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       312 PLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             eEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence             888776 57889999999999998883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.32  E-value=3.8e-09  Score=101.19  Aligned_cols=265  Identities=14%  Similarity=0.104  Sum_probs=164.1

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  221 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (498)
                      .+..+++++.+|.|..+|..+|+.+.+.........   ...  .++..+++++.++.+..+|..+|+.........   
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---  135 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---  135 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence            356788888899999999999977665433332111   111  256778888899999999999998765443321   


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEeCCCCCEEEEee
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGHLIYSGS  296 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~s~s  296 (498)
                                    .+.+.-.. .+..++.++.++.|+.||.++++.+.++......+     .+....   +..++.+.
T Consensus       136 --------------~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~  197 (377)
T TIGR03300       136 --------------EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGF  197 (377)
T ss_pred             --------------eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEEC
Confidence                          11111111 24467778889999999999998876664332211     112222   24677888


Q ss_pred             CCCeEEEEcCccccCCCceeEEecccc----c---cEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883          297 DDNLCKVWDRRCLNVKGKPAGVLMGHL----E---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       297 ~dg~i~vwd~~~~~~~~~~~~~~~~~~----~---~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      .+|.+..+|.+    .++.+.......    .   ....+.-+|  .+..+++++.+|.+..||..+...          
T Consensus       198 ~~g~v~ald~~----tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~----------  263 (377)
T TIGR03300       198 AGGKLVALDLQ----TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV----------  263 (377)
T ss_pred             CCCEEEEEEcc----CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE----------
Confidence            89999999987    554443221100    0   000011111  245788888899999999977421          


Q ss_pred             ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883          368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT  447 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~  447 (498)
                                              +-......        ...|.  .++..+++++.+|.|+.+|..+|+.+.......
T Consensus       264 ------------------------~W~~~~~~--------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~  309 (377)
T TIGR03300       264 ------------------------LWKRDASS--------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK  309 (377)
T ss_pred             ------------------------EEeeccCC--------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc
Confidence                                    11111000        01111  146678888899999999999999887653211


Q ss_pred             -CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          448 -SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       448 -~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                       ........  .+..|++++.||.|+++|..+++..
T Consensus       310 ~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       310 YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence             12222223  4568889999999999998776543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=1.8e-08  Score=88.78  Aligned_cols=287  Identities=15%  Similarity=0.150  Sum_probs=172.0

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCC--CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEE
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVH  201 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~---dg~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~  201 (498)
                      -.+.+..+-++|+|+++.|.++-.   +|.|-.|.++.  |. +...........+.+.+++++++++|+++.. .|.|.
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~-Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR-LTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe-EEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            345667788999999999988765   46788888775  42 2222111122224488999999999999886 57899


Q ss_pred             EEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEe---ccC
Q 010883          202 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRIL---AHT  276 (498)
Q Consensus       202 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~---~~~  276 (498)
                      ++.+.. |.......... +.+.  .++ ...-+..+.+..+.|++++|++..- ...|.+|++..+++...-.   ...
T Consensus       115 v~p~~~dG~l~~~v~~~~-h~g~--~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G  190 (346)
T COG2706         115 VYPLQADGSLQPVVQVVK-HTGS--GPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG  190 (346)
T ss_pred             EEEcccCCccccceeeee-cCCC--CCC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence            999865 44333222111 1110  000 0001113788999999999988753 2369999999876543221   344


Q ss_pred             CCeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEecc------ccccEEEEEEcCCCCEEEEEeC-CCcEE
Q 010883          277 SDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG------HLEGITFIDSRGDGRYLISNGK-DQAIK  348 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~-dg~i~  348 (498)
                      ...+.|.|+ |++++.+... -+++|-+|........-..++.+..      .......|..++||++|.++.. ...|.
T Consensus       191 ~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         191 AGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             CCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            567999998 7788776655 5889999998732111122222111      1235677889999999987754 33577


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC-
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS-  427 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-  427 (498)
                      +|.+....                                 ..+..........   .+.....++++|++|+++..++ 
T Consensus       270 ~f~V~~~~---------------------------------g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         270 VFSVDPDG---------------------------------GKLELVGITPTEG---QFPRDFNINPSGRFLIAANQKSD  313 (346)
T ss_pred             EEEEcCCC---------------------------------CEEEEEEEeccCC---cCCccceeCCCCCEEEEEccCCC
Confidence            77766532                                 1111111111000   0112224677899999998754 


Q ss_pred             eEEEEECC--CCcEEEEec-cCCCCeeeeEEc
Q 010883          428 CVYVYDLV--SGEQVAALK-YHTSPVRDCSWH  456 (498)
Q Consensus       428 ~i~iwd~~--~~~~~~~~~-~h~~~v~~l~~s  456 (498)
                      .|.+|...  +|++-.... .......|+.|.
T Consensus       314 ~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         314 NITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             cEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            57777654  455433332 233445566653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.1e-09  Score=99.45  Aligned_cols=253  Identities=19%  Similarity=0.288  Sum_probs=161.3

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC--CeEEE-----EECCCeEEEEECCC
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVY-----ASMSPIVHIVDVGS  207 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~-----~s~d~~i~iwd~~~  207 (498)
                      ++..|++|..+.|-- ..+.+.+|++.+...+...+    |...|+.+.+||.+  ..+|+     .+.-..|+||...-
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl----~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~  203 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKL----SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE  203 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCccceeeee----eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence            688999998765533 34679999998743333332    34469999999974  34443     34456899998763


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeC-----------CCeEEEEECCCCeeeEEEecc
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSS-----------DDCIYVYDLEANKLSLRILAH  275 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~-----------dg~i~vwd~~~~~~~~~~~~~  275 (498)
                      ..............             ..=..+.|++-|.-| +.++.           ..+++++++........+ ..
T Consensus       204 ~~~~~~~a~ksFFk-------------adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k  269 (566)
T KOG2315|consen  204 EGQHQPVANKSFFK-------------ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LK  269 (566)
T ss_pred             ccccchhhhccccc-------------cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CC
Confidence            32211111111110             023357888877633 22221           236888888844444333 45


Q ss_pred             CCCeeEEEEeCCCCCEEEE--eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEE
Q 010883          276 TSDVNTVCFGDESGHLIYS--GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLW  350 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iw  350 (498)
                      .++|.+++|+ +++.-+++  |-.--.+.|||++     +.++..+  ..++-+++-|+|.|++|+.++-+   |.|-||
T Consensus       270 ~GPVhdv~W~-~s~~EF~VvyGfMPAkvtifnlr-----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  270 EGPVHDVTWS-PSGREFAVVYGFMPAKVTIFNLR-----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             CCCceEEEEC-CCCCEEEEEEecccceEEEEcCC-----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence            7999999998 55654443  3445689999994     6666665  35777889999999999987764   789999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-----
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----  425 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----  425 (498)
                      |+.+...                                  +..+....    ..-+    .|+|||.++++++.     
T Consensus       342 Dv~n~K~----------------------------------i~~~~a~~----tt~~----eW~PdGe~flTATTaPRlr  379 (566)
T KOG2315|consen  342 DVPNRKL----------------------------------IAKFKAAN----TTVF----EWSPDGEYFLTATTAPRLR  379 (566)
T ss_pred             eccchhh----------------------------------ccccccCC----ceEE----EEcCCCcEEEEEeccccEE
Confidence            9988432                                  22222211    1111    57779999999875     


Q ss_pred             -CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883          426 -DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       426 -dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                       |+.++||+. +|..+....-.. ....+.|-|-
T Consensus       380 vdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~  411 (566)
T KOG2315|consen  380 VDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF  411 (566)
T ss_pred             ecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence             678999997 676665443222 5777778753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.26  E-value=1.3e-08  Score=97.57  Aligned_cols=261  Identities=18%  Similarity=0.143  Sum_probs=159.4

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  221 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (498)
                      ++..+++++.++.+..+|..+|+.+.+....    ..+.+.-.. .+..++.++.++.+..||..+++............
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~  178 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS----SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL  178 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC----ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence            4677888889999999999998766553321    122211111 34567777889999999999988755443321100


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-CC---C------e-eEEEEeCCCCC
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TS---D------V-NTVCFGDESGH  290 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~---~------v-~~~~~~~~~~~  290 (498)
                      .  .     ...    .+.... + ..++.+..++.+..+|..+++.+...... ..   .      + ....+   .+.
T Consensus       179 ~--~-----~~~----~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~  242 (377)
T TIGR03300       179 T--L-----RGS----ASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGG  242 (377)
T ss_pred             e--e-----cCC----CCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECC
Confidence            0  0     000    011111 2 36788888899999999999876543211 00   0      1 11122   245


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      .+++++.+|.++.||..    .++.+.....  ........  ++..+++++.+|.+..+|..+.....           
T Consensus       243 ~vy~~~~~g~l~a~d~~----tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W-----------  303 (377)
T TIGR03300       243 QVYAVSYQGRVAALDLR----SGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELW-----------  303 (377)
T ss_pred             EEEEEEcCCEEEEEECC----CCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEE-----------
Confidence            78888899999999997    5655544431  11112222  45678888899999999997743211           


Q ss_pred             cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCe
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV  450 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v  450 (498)
                                             .......     ....+|..  .+..|++++.+|.|+++|..+|+.+..++.+...+
T Consensus       304 -----------------------~~~~~~~-----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~  353 (377)
T TIGR03300       304 -----------------------KNDELKY-----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI  353 (377)
T ss_pred             -----------------------ccccccC-----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence                                   1100000     00111111  35688999999999999999999999988666544


Q ss_pred             e-eeEEcCCCCeEEEEeCCCcEEEe
Q 010883          451 R-DCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       451 ~-~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                      . +..+. ++ .|+.++.||.|+.+
T Consensus       354 ~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       354 ASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             ccCCEEE-CC-EEEEEeCCceEEEe
Confidence            3 33333 33 58888899998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=5.9e-10  Score=96.79  Aligned_cols=251  Identities=17%  Similarity=0.230  Sum_probs=173.2

Q ss_pred             cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC-CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ..++...|++...-|...-+++.+.|.+++||--. .++.-..+...               -..+++++.+.++...|+
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~---------------mP~~~~~~~y~~e~~~L~   84 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY---------------MPSPCSAMEYVSESRRLY   84 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh---------------CCCCceEeeeeccceEEE
Confidence            35666678888888888889999999999999643 33332222111               122799999999999999


Q ss_pred             EEeCCCeEEEEECC----CCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883          251 AGSSDDCIYVYDLE----ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI  326 (498)
Q Consensus       251 ~g~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v  326 (498)
                      +|-.+|++.-+.+.    .....+....|...+..+-|+ ....++++.+.|..+.---.+    .+..+..+.- ....
T Consensus        85 vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e----~~~~lg~Y~~-~~~~  158 (404)
T KOG1409|consen   85 VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTE----SGNRLGGYNF-ETPA  158 (404)
T ss_pred             EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeec----cCCcccceEe-eccC
Confidence            99999999988654    334555667899999999997 667888899988776544333    2221111100 0011


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      +++.+.-.  +...|...|.|.+-.+....                                -+.+.++.+|....    
T Consensus       159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~--------------------------------~~~i~~~~~h~~~~----  200 (404)
T KOG1409|consen  159 SALQFDAL--YAFVGDHSGQITMLKLEQNG--------------------------------CQLITTFNGHTGEV----  200 (404)
T ss_pred             CCCceeeE--EEEecccccceEEEEEeecC--------------------------------CceEEEEcCcccce----
Confidence            11111111  34445555655555443311                                25677777777433    


Q ss_pred             EEeccccCCCCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                        .+..|.+...+|++|..|..+.+||+.-.+ ....+.+|...|..+..-+--+.|++++.||.|.+|+++......
T Consensus       201 --~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~et  276 (404)
T KOG1409|consen  201 --TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVET  276 (404)
T ss_pred             --EEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecC
Confidence              333666788999999999999999997654 346678999999999998888999999999999999998765443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.24  E-value=9.6e-09  Score=109.10  Aligned_cols=269  Identities=13%  Similarity=0.139  Sum_probs=156.4

Q ss_pred             EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEeecC-----------CCceeEEEEEeCCCCCeEEEEEC-CCeEE
Q 010883          135 YVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAK-----------SLRWTVTDTSLSPDQRHLVYASM-SPIVH  201 (498)
Q Consensus       135 ~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp~~~~l~~~s~-d~~i~  201 (498)
                      ..++++++ |+++++-..++.|++||.... .+.......           ..-.....+++.++++.|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788875 667777777889999998754 332221100           01123678999998887666554 56899


Q ss_pred             EEECCCCceeccccccccccCccccccCC--CCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEecc---
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH---  275 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---  275 (498)
                      ++|..++....+.....  .+..+.....  ...-.....++|+| ++..+++...++.|++||..++... .+.+.   
T Consensus       650 ~id~~~~~V~tlag~G~--~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~  726 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGT--KGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE  726 (1057)
T ss_pred             EEecCCCEEEEEeccCc--ccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence            99988765433221100  0000000000  00011346899999 5666677777889999999877543 22111   


Q ss_pred             ------------CCCeeEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEE-------------ecc--------
Q 010883          276 ------------TSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGV-------------LMG--------  321 (498)
Q Consensus       276 ------------~~~v~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~--------  321 (498)
                                  -.....|+++ +++. ++++-+.++.|++||+..    +.....             +..        
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~t----g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKT----GGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             ccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCC----CcEEEEEecccccCcccccccCCCCchhhh
Confidence                        1235678998 5555 666667789999999862    221100             000        


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883          322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL  401 (498)
Q Consensus       322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (498)
                      .......++++++|+.+++-..++.|++||..+.........+..         .+         ..+..         .
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~---------G~---------~dG~~---------~  854 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA---------GF---------KDGKA---------L  854 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc---------CC---------CCCcc---------c
Confidence            011245889999999888888999999999876321110000000         00         00000         0


Q ss_pred             EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                      .........++++++|+++++-+.++.|++||+.+++.
T Consensus       855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            00000112235667899888888899999999988764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.24  E-value=2.1e-08  Score=91.80  Aligned_cols=266  Identities=17%  Similarity=0.257  Sum_probs=160.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECC---------------CeEEEEECCCCeEEEEEeecCCC--------------------
Q 010883          131 TSRAYVSQFSADGSLFVAGFQA---------------SQIRIYDVERGWKIQKDILAKSL--------------------  175 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~d---------------g~i~vw~~~~~~~~~~~~~~~~~--------------------  175 (498)
                      ...|.-+.|||.++||.+-+..               ..+.|||..+|..+.........                    
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv  150 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV  150 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence            3468889999999999985543               24899999887333221111100                    


Q ss_pred             ----------------------ceeEEEEEeCCCC--CeEEE-----EECCCeEEEEECCCCceeccccccccccCcccc
Q 010883          176 ----------------------RWTVTDTSLSPDQ--RHLVY-----ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS  226 (498)
Q Consensus       176 ----------------------~~~v~~~~~sp~~--~~l~~-----~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (498)
                                            ...|....|+|.+  ..||+     ....+.+++|.+..+..+....+...       
T Consensus       151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~-------  223 (561)
T COG5354         151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV-------  223 (561)
T ss_pred             cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-------
Confidence                                  0245555666643  23333     23455666666665544443333221       


Q ss_pred             ccCCCCceecEEEEEEcCCCCEEEEEe-----------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE-EE
Q 010883          227 AADDGGYSFGIFSLKFSTDGRELVAGS-----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YS  294 (498)
Q Consensus       227 ~~~~~~h~~~i~~~~~s~~g~~l~~g~-----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s  294 (498)
                               .=..+.|.+.|++|++--           ....++++++....+.... ...++|...+|.|...++. ++
T Consensus       224 ---------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         224 ---------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             ---------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEe
Confidence                     123578888888776532           1246888888754443333 6688999999985444433 33


Q ss_pred             eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCccccccc
Q 010883          295 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWD  371 (498)
Q Consensus       295 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~  371 (498)
                      |-.+-.+.++|++     +...  +......=+.+.|+|.+++++.++-|   |.+-+||....-               
T Consensus       294 g~~pa~~s~~~lr-----~Nl~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf---------------  351 (561)
T COG5354         294 GYMPASVSVFDLR-----GNLR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF---------------  351 (561)
T ss_pred             cccccceeecccc-----cceE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCce---------------
Confidence            4578889999996     3333  23344555678899999999998765   678999876511               


Q ss_pred             ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec------CCeEEEEECCCCcEEEEecc
Q 010883          372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------DSCVYVYDLVSGEQVAALKY  445 (498)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~  445 (498)
                                        ..+..+.+...    ..|    .||||+.++.+...      |..|.|||+.....-     
T Consensus       352 ------------------~~~~~~~~~n~----s~~----~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----  400 (561)
T COG5354         352 ------------------KVAGAFNGLNT----SYC----DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----  400 (561)
T ss_pred             ------------------EEEEEeecCCc----eEe----eccCCceEEEecCCCcccccCcceEEEEecCchhh-----
Confidence                              11212332221    111    57889999888643      788999998543322     


Q ss_pred             CCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          446 HTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       446 h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                         ..+.+.|.|.+++..+.+.+.
T Consensus       401 ---el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 ---ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ---hhhhccccCCcccceeeccCC
Confidence               345566777666655555443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.22  E-value=1.5e-08  Score=107.75  Aligned_cols=272  Identities=10%  Similarity=0.111  Sum_probs=158.7

Q ss_pred             EEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCe
Q 010883          180 TDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC  257 (498)
Q Consensus       180 ~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~  257 (498)
                      ..++++++ ++++++-+.++.|++||........... . ...+..- .......-.....+++.+++..|+++. .++.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~-g~~G~~d-G~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-T-GEEGLRD-GSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-C-CCcCCCC-CchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            45788875 5566666678889999986543221111 0 0000000 000001122467899999888666654 4567


Q ss_pred             EEEEECCCCeeeEEEecc-----------------CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec
Q 010883          258 IYVYDLEANKLSLRILAH-----------------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM  320 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  320 (498)
                      |+++|+.++.. .++.+.                 -.....++++|.++.++++.+.++.|++||..    .+. +..+.
T Consensus       648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~----~g~-v~~~~  721 (1057)
T PLN02919        648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS----DGV-TRVFS  721 (1057)
T ss_pred             EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC----CCe-EEEEe
Confidence            99999887653 333210                 12346789985477788888888999999985    222 11111


Q ss_pred             c---------------ccccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883          321 G---------------HLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL  384 (498)
Q Consensus       321 ~---------------~~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (498)
                      +               .......|+++|++..| ++.+.++.|++||+.+.........  ..        .++.     
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg--~~--------~~~~-----  786 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG--DP--------TFSD-----  786 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec--cc--------ccCc-----
Confidence            1               11235679999999854 5556678999999886431100000  00        0000     


Q ss_pred             cCCCCceEEEEccCce--eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-------------cCCCC
Q 010883          385 KHPCDQSVATYKGHSV--LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-------------YHTSP  449 (498)
Q Consensus       385 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------~h~~~  449 (498)
                            .+..+.....  ..........++++++|+++++-+.++.|++||..++.......             +.-..
T Consensus       787 ------~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~  860 (1057)
T PLN02919        787 ------NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE  860 (1057)
T ss_pred             ------ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence                  0000000000  00000011233567789988888889999999998876543221             11235


Q ss_pred             eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          450 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       450 v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      ...++++++|+++++-+.++.|++||+.++..
T Consensus       861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            67899999999999889999999999987653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=3.3e-10  Score=107.38  Aligned_cols=259  Identities=8%  Similarity=0.064  Sum_probs=168.7

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCcccc-ccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSD  255 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~s~~g~~l~~g~~d  255 (498)
                      ....+++|+....++++|+.||.+++..+.+.........-...  ..++ .....||...|.-+.|+.+.+.|-+...+
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~--snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAA--SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccc--cccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            36889999999999999999999999998765432222110000  1111 12345899999999999999999999999


Q ss_pred             CeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          256 DCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      |.|.||-+-.+.....+.  ...+-|.+++|+ .+|..++....||.|.+=.+.     +..+.-..-.......+.|++
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvd-----GNRIwgKeLkg~~l~hv~ws~  166 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVD-----GNRIWGKELKGQLLAHVLWSE  166 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeec-----cceecchhcchheccceeecc
Confidence            999999998876543332  345678999998 889999999999998887664     222211111112234688999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe-c--
Q 010883          334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF-S--  410 (498)
Q Consensus       334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--  410 (498)
                      |.+.++.+-.+|.+.+||....-..... .         ..   .-+        .....+-.++.    +....| +  
T Consensus       167 D~~~~Lf~~ange~hlydnqgnF~~Kl~-~---------~c---~Vn--------~tg~~s~~~~k----ia~i~w~~g~  221 (1189)
T KOG2041|consen  167 DLEQALFKKANGETHLYDNQGNFERKLE-K---------DC---EVN--------GTGIFSNFPTK----IAEIEWNTGP  221 (1189)
T ss_pred             cHHHHHhhhcCCcEEEecccccHHHhhh-h---------ce---EEe--------eeeeecCCCcc----ccceeeccCc
Confidence            9999988889999999997652110000 0         00   000        00000000000    001111 0  


Q ss_pred             -cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          411 -PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       411 -~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                       ....||...|+++-.+|.+.|..-.+......+. ..-.|....|+++|..|+.+|.|.
T Consensus       222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcc
Confidence             0134588899999999999887654433322332 225788999999999999998753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.20  E-value=1.7e-08  Score=91.60  Aligned_cols=191  Identities=19%  Similarity=0.183  Sum_probs=137.4

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-CCC---c-----eeEEEEE-eCC-CCCeEEEEECCCeEEEEEC
Q 010883          137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL---R-----WTVTDTS-LSP-DQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-~~~---~-----~~v~~~~-~sp-~~~~l~~~s~d~~i~iwd~  205 (498)
                      -..+.||+.++.. ..|.|.+||.++.. +.++... .-.   .     .+..-+. |++ +|.+++..|. |...|.+.
T Consensus       272 R~~nsDGkrIvFq-~~GdIylydP~td~-lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~  348 (668)
T COG4946         272 RNANSDGKRIVFQ-NAGDIYLYDPETDS-LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP  348 (668)
T ss_pred             cccCCCCcEEEEe-cCCcEEEeCCCcCc-ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence            3455688877754 56789999988752 2222111 000   0     0111111 444 6888888875 56777766


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      ..+-.+.+                  +|.+.|.-..+..++.-++.|..|| .+-|+|..+++. .++...-+.|.++..
T Consensus       349 ~~~~~iqv------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~v  409 (668)
T COG4946         349 WDGYSIQV------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKV  409 (668)
T ss_pred             CCCeeEEc------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEE
Confidence            55543322                  3455788888888888899999999 899999998875 456677789999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC----cEEEEeCCC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ----AIKLWDIRK  354 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg----~i~iwd~~~  354 (498)
                      + +++..++.+.....+.+.|+.    ++.....-+...+-|+.+.|+|++++||-+--+|    .|+++|+..
T Consensus       410 s-~dGK~~vvaNdr~el~vidid----ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         410 S-PDGKKVVVANDRFELWVIDID----NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             c-CCCcEEEEEcCceEEEEEEec----CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            7 889999999999999999998    6666555556667899999999999999776654    689999886

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=5.3e-08  Score=93.25  Aligned_cols=209  Identities=14%  Similarity=0.115  Sum_probs=125.2

Q ss_pred             eEEEEEeCCCCCe-EEEEECC---CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883          178 TVTDTSLSPDQRH-LVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  253 (498)
Q Consensus       178 ~v~~~~~sp~~~~-l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~  253 (498)
                      .+....|+|||+. ++..+.+   ..|.++|+.+++...+....                 +......|+|||+.|+...
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~  251 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTM  251 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEE
Confidence            5778999999985 6655443   57999999888765554321                 1355678999998776543


Q ss_pred             C---CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCC--eEEEEcCccccCCCceeEEeccccccEE
Q 010883          254 S---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVWDRRCLNVKGKPAGVLMGHLEGIT  327 (498)
Q Consensus       254 ~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~  327 (498)
                      .   +..|+++|+.+++. ..+..+........|+ |+++.|+..+ ..+  .|.+.|+.    .+.... +.....  .
T Consensus       252 ~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~----~g~~~r-lt~~g~--~  322 (419)
T PRK04043        252 APKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLN----SGSVEQ-VVFHGK--N  322 (419)
T ss_pred             ccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECC----CCCeEe-CccCCC--c
Confidence            2   35799999988764 4455454434556898 6776655554 334  56677775    333322 221111  1


Q ss_pred             EEEEcCCCCEEEEEeCC---------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883          328 FIDSRGDGRYLISNGKD---------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH  398 (498)
Q Consensus       328 ~l~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (498)
                      ...|+|||+.|+..+..         ..|.+.|+.+..                                   ...+...
T Consensus       323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----------------------------------~~~LT~~  367 (419)
T PRK04043        323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-----------------------------------IRRLTAN  367 (419)
T ss_pred             CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----------------------------------eEECCCC
Confidence            24899999998876643         256666765521                                   1111111


Q ss_pred             ceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEE
Q 010883          399 SVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSW  455 (498)
Q Consensus       399 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~  455 (498)
                      .       ....|.|+|||+.|+..+.++   .+.+.++.. .....+....+.+...+|
T Consensus       368 ~-------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~~~~p~W  419 (419)
T PRK04043        368 G-------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGKIQSIDW  419 (419)
T ss_pred             C-------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCccCCCCC
Confidence            0       113468899999887766532   466777744 333344333444544443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.15  E-value=5.8e-08  Score=83.11  Aligned_cols=149  Identities=19%  Similarity=0.201  Sum_probs=95.3

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          137 SQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      ++.+.||++||+- .|..|.|-...++.  .+.+........-.=..++||||+.+||.+...|+|+++|+.......+.
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~   81 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP   81 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence            5778999998877 67788887766541  22222233333334578999999999999999999999999875543222


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCC------CEEEEEeCCCeEEEEECCCC--e---eeEEE--e-ccCCCee
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------RELVAGSSDDCIYVYDLEAN--K---LSLRI--L-AHTSDVN  280 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g------~~l~~g~~dg~i~vwd~~~~--~---~~~~~--~-~~~~~v~  280 (498)
                      . ...     +.    +.....|..+.|.+-.      ..|++-...|.++-|-+..+  +   ....+  . .+...|.
T Consensus        82 p-~~~-----~~----~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~  151 (282)
T PF15492_consen   82 P-AMS-----FP----GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN  151 (282)
T ss_pred             c-ccc-----cC----CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence            2 110     10    1123467788776532      25677778888877765322  1   22222  2 2467899


Q ss_pred             EEEEeCCCCCEEEEeeC
Q 010883          281 TVCFGDESGHLIYSGSD  297 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~  297 (498)
                      ++.|. +..++|++|+.
T Consensus       152 ~~vy~-p~h~LLlVgG~  167 (282)
T PF15492_consen  152 SAVYH-PKHRLLLVGGC  167 (282)
T ss_pred             EEEEc-CCCCEEEEecc
Confidence            99997 56667766654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.15  E-value=5.9e-10  Score=98.95  Aligned_cols=163  Identities=20%  Similarity=0.215  Sum_probs=110.6

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC---eEEEEECCCCce
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTM  210 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~---~i~iwd~~~~~~  210 (498)
                      ...+..++.+++||.+..+....++++....+..+..........-+++.|..+......+...|   .+.+|....+..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            34456788888888888887777777655432112111112222344555555555555544434   455555444332


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG  289 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~  289 (498)
                      ..                 ..||-..+++++|+||+++|+++..|..|++-.....-.+..+. +|+..|..++..  ++
T Consensus       145 ~~-----------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~  205 (390)
T KOG3914|consen  145 EP-----------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DN  205 (390)
T ss_pred             ch-----------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cC
Confidence            21                 12677789999999999999999999999998887765555544 799999999995  46


Q ss_pred             CEEEEeeCCCeEEEEcCccccCCCceeEEe
Q 010883          290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVL  319 (498)
Q Consensus       290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  319 (498)
                      ..|++|+.|++|++||++    +++.+..+
T Consensus       206 ~~LlS~sGD~tlr~Wd~~----sgk~L~t~  231 (390)
T KOG3914|consen  206 YLLLSGSGDKTLRLWDIT----SGKLLDTC  231 (390)
T ss_pred             ceeeecCCCCcEEEEecc----cCCccccc
Confidence            679999999999999998    66665443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=6.2e-08  Score=93.24  Aligned_cols=216  Identities=13%  Similarity=0.052  Sum_probs=146.1

Q ss_pred             cccccCCCCCccccCCCCceEEEEEcCC------CC------EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEE
Q 010883          115 LSRYLPVNGPWPVDQTTSRAYVSQFSAD------GS------LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT  182 (498)
Q Consensus       115 ~~~~~~~~~~~~l~~h~~~v~~~~~s~d------g~------~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~  182 (498)
                      +.+....+..+.+..|...|+.+.|.|-      +.      +||++...|.|.+||...+..+.   ....+..++.++
T Consensus        39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl  115 (1062)
T KOG1912|consen   39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDL  115 (1062)
T ss_pred             EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhhe
Confidence            3344455666788899999999999883      12      56777778999999998873333   345666789999


Q ss_pred             EeCC---CC-CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCe
Q 010883          183 SLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDC  257 (498)
Q Consensus       183 ~~sp---~~-~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~  257 (498)
                      +|-|   +. ..|+.-....++.+|+..+|+.........                ....|+.+.| |.+++..-+..|.
T Consensus       116 ~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~----------------~iLs~f~~DPfd~rh~~~l~s~g~  179 (1062)
T KOG1912|consen  116 CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH----------------EILSCFRVDPFDSRHFCVLGSKGF  179 (1062)
T ss_pred             eeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC----------------cceeeeeeCCCCcceEEEEccCce
Confidence            9977   33 456666677899999999998754433221                1466788888 6777777777787


Q ss_pred             EEEEECCC-------CeeeEEEeccCC-------------------------CeeEEEEeCCCCCEEEEeeCCCeEEEEc
Q 010883          258 IYVYDLEA-------NKLSLRILAHTS-------------------------DVNTVCFGDESGHLIYSGSDDNLCKVWD  305 (498)
Q Consensus       258 i~vwd~~~-------~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~~l~s~s~dg~i~vwd  305 (498)
                      |.+.+.-.       ++..+.-..|..                         ....++|+|.-.+.++. .....+.++|
T Consensus       180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~d  258 (1062)
T KOG1912|consen  180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFD  258 (1062)
T ss_pred             EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEc
Confidence            77766432       122221112211                         01224566544444443 4567899999


Q ss_pred             CccccCCCceeEEeccccccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC
Q 010883          306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~s~~~dg~i~iwd~~~  354 (498)
                      ++    ...++....-..+.+..+.+-|++  ..|++...||.+.+|--+.
T Consensus       259 le----~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  259 LE----YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ch----hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            97    666777766667777788888876  4688999999999997654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.11  E-value=1.5e-07  Score=80.70  Aligned_cols=237  Identities=17%  Similarity=0.124  Sum_probs=133.9

Q ss_pred             EEeCCCCCeEEEEECCCeEEEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 010883          182 TSLSPDQRHLVYASMSPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY  259 (498)
Q Consensus       182 ~~~sp~~~~l~~~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~  259 (498)
                      ++.+++|+.||+. .|..|.|-..++.-  .+....++....             -.=.-++|+||+..||.+...|+|+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~-------------PQWRkl~WSpD~tlLa~a~S~G~i~   68 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN-------------PQWRKLAWSPDCTLLAYAESTGTIR   68 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC-------------chheEEEECCCCcEEEEEcCCCeEE
Confidence            5667889888765 46677776654421  111111111110             1456799999999999999999999


Q ss_pred             EEECCCCeeeEEEec-------cCCCeeEEEEeCCC-----CCEEEEeeCCCeEEEEcCcccc-CCCceeEE--ecc-cc
Q 010883          260 VYDLEANKLSLRILA-------HTSDVNTVCFGDES-----GHLIYSGSDDNLCKVWDRRCLN-VKGKPAGV--LMG-HL  323 (498)
Q Consensus       260 vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~--~~~-~~  323 (498)
                      ++|+....+ ..+..       -...|..+.|.+..     ...|++-..+|.++-|-+.... ........  +.. +.
T Consensus        69 vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp  147 (282)
T PF15492_consen   69 VFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP  147 (282)
T ss_pred             EEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence            999976443 33322       22466777775332     2356666778888777653211 12222222  222 46


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      .+|.++.++|..++|++|+....      ........                            ..-+..++.-     
T Consensus       148 ~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s~a~----------------------------~~GLtaWRiL-----  188 (282)
T PF15492_consen  148 HGINSAVYHPKHRLLLVGGCEQN------QDGMSKAS----------------------------SCGLTAWRIL-----  188 (282)
T ss_pred             CceeEEEEcCCCCEEEEeccCCC------CCcccccc----------------------------ccCceEEEEc-----
Confidence            78999999999898887765322      00000000                            0001111100     


Q ss_pred             EEEEEeccccCCCCcEEEEEecCC------eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDS------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                              .-+|..+.+ +...|+      +-.+|.+-+.+...........|..+..||||..||+...+|.|.+|+++
T Consensus       189 --------~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  189 --------SDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             --------CCCCcEEEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence                    001111111 111111      12334433333222223356789999999999999999999999999998


Q ss_pred             CCCC
Q 010883          478 GNGE  481 (498)
Q Consensus       478 ~~~~  481 (498)
                      .-..
T Consensus       260 sL~~  263 (282)
T PF15492_consen  260 SLRL  263 (282)
T ss_pred             cchh
Confidence            7543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.11  E-value=3.5e-07  Score=95.59  Aligned_cols=283  Identities=12%  Similarity=0.150  Sum_probs=168.9

Q ss_pred             CceEEEEEcCCCCEEEEEEC--CC--eEEEEECCCCeEEEEEeec-----CCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          132 SRAYVSQFSADGSLFVAGFQ--AS--QIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~--dg--~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ..+...+|.+..+.+..+..  ..  .|.+.....+.........     ......|.++.+-++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            45677777777654443332  22  3444444333211111111     123457999999999999999999999999


Q ss_pred             E----ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC--------------
Q 010883          203 V----DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--------------  264 (498)
Q Consensus       203 w----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~--------------  264 (498)
                      .    +..+......-.+.                 .+|.+++||||+..|+..+.+++|.+.+-.              
T Consensus       102 ~~~~~~~~~~~~E~VG~vd-----------------~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~  164 (928)
T PF04762_consen  102 VREDPDPDEDEIEIVGSVD-----------------SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF  164 (928)
T ss_pred             EEccCCCCCceeEEEEEEc-----------------CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence            9    55554443332222                 279999999999999999999988876421              


Q ss_pred             -C--------CeeeEEEec------------------------cCCCeeEEEEeCCCCCEEEEeeC---C---CeEEEEc
Q 010883          265 -A--------NKLSLRILA------------------------HTSDVNTVCFGDESGHLIYSGSD---D---NLCKVWD  305 (498)
Q Consensus       265 -~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~l~s~s~---d---g~i~vwd  305 (498)
                       .        |+....+.+                        +...-..|+|- .||.+|++.+.   .   ..++||+
T Consensus       165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEEC
Confidence             0        010011100                        23345678895 89999998875   2   5799999


Q ss_pred             CccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883          306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR  382 (498)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      ..     +....+...-.+--.+++|.|.|++||+...   ...|.+|.-+.... .                       
T Consensus       244 Re-----G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh-g-----------------------  294 (928)
T PF04762_consen  244 RE-----GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH-G-----------------------  294 (928)
T ss_pred             CC-----ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-e-----------------------
Confidence            74     4433333322333457899999999998764   23466665433110 0                       


Q ss_pred             cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE--EEEecc-CCCCeeeeEEcCCC
Q 010883          383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKY-HTSPVRDCSWHPSQ  459 (498)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~-h~~~v~~l~~sp~~  459 (498)
                             +  ..+........+.    ...|++|+..||....|. |.+|-..+..-  .+.+.. ....+..+.|+|..
T Consensus       295 -------e--F~l~~~~~~~~v~----~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  295 -------E--FTLRFDPEEEKVI----ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK  360 (928)
T ss_pred             -------e--EecCCCCCCceee----EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence                   0  0111001111222    335666999999987666 99999877542  223321 23345569999976


Q ss_pred             C-eEEEEeCCCcEEEec
Q 010883          460 P-MLVSSSWDGDVVRWE  475 (498)
Q Consensus       460 ~-~l~s~~~Dg~i~iw~  475 (498)
                      + .|...+.+|.+..++
T Consensus       361 p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  361 PLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCEEEEEecCCcEEEEE
Confidence            6 466666667665533

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=6.1e-10  Score=102.56  Aligned_cols=288  Identities=11%  Similarity=0.156  Sum_probs=185.9

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEE---EEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~-~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      ...+.+|+..|..++--.+.+-+++++.|++|++|.+... ..+   .-......|..+|.++.|-.+-++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            4567899999999987778888999999999999998642 111   1234566788899999999999888654  789


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEe-----
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRIL-----  273 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~-----  273 (498)
                      |++||.--++..........+           +-.+.|.|+. +-+...+.+| +...+|+++|.+.++.+..++     
T Consensus       806 iHlWDPFigr~Laq~~dapk~-----------~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~  873 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKE-----------GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP  873 (1034)
T ss_pred             ceeecccccchhHhhhcCccc-----------CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence            999998766553321111000           1111233332 1134444444 667899999999988766655     


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEE-EeC
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL-WDI  352 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~i-wd~  352 (498)
                      +...-+.+++.. +.|++++++-..|.|.+.|.+    +++.+..+....-....++ .|..+.|+....|..+.+ |..
T Consensus       874 ~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  874 GPNALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             CCchheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence            234568899997 789999999999999999999    7877777665544444443 345567777777888877 765


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY  432 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  432 (498)
                      -.+..                                    .+........   ..|-..   -|.-|+++.....+.+|
T Consensus       948 ldgim------------------------------------h~q~kpppep---ahflqs---vgpSLV~a~~Gn~lgVY  985 (1034)
T KOG4190|consen  948 LDGIM------------------------------------HLQDKPPPEP---AHFLQS---VGPSLVTAQNGNILGVY  985 (1034)
T ss_pred             cCCee------------------------------------eeccCCCCcc---hhhhhc---cCceeEEeccCcEEEEE
Confidence            44211                                    1111100000   001001   24456666666667777


Q ss_pred             ECCC----CcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883          433 DLVS----GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR  473 (498)
Q Consensus       433 d~~~----~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i  473 (498)
                      --..    ...+..++  ...+..++++.-|-..-+..|...|.|.+
T Consensus       986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            4211    11122222  23467888888888887788888888875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.5e-07  Score=90.20  Aligned_cols=194  Identities=11%  Similarity=0.029  Sum_probs=119.8

Q ss_pred             cEEEEEEcCCCCE-EEEEeC---CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE-EEeeCC--CeEEEEcCcc
Q 010883          236 GIFSLKFSTDGRE-LVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDD--NLCKVWDRRC  308 (498)
Q Consensus       236 ~i~~~~~s~~g~~-l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~d--g~i~vwd~~~  308 (498)
                      ......|+|||+. ++..+.   +..|+++|+.+++... +....+......|+ |+++.+ ++.+.+  ..|.++|+. 
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~-  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN-  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC-
Confidence            4678999999985 554443   3569999998887643 33455666778898 566544 444444  467777875 


Q ss_pred             ccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883          309 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK  385 (498)
Q Consensus       309 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (498)
                         .+ ....+..+........|+|||+.|+..+. .+  .|.++|+.+....                           
T Consensus       266 ---~g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~---------------------------  314 (419)
T PRK04043        266 ---TK-TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE---------------------------  314 (419)
T ss_pred             ---CC-cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE---------------------------
Confidence               33 33444444433445679999998876653 23  5777777653210                           


Q ss_pred             CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---------CeEEEEECCCCcEEEEeccCCCCeeeeEEc
Q 010883          386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWH  456 (498)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s  456 (498)
                           . .++.+.          +.+.|||||++|+..+..         ..|++.|+.++... .+... .......|+
T Consensus       315 -----r-lt~~g~----------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~S  376 (419)
T PRK04043        315 -----Q-VVFHGK----------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFS  376 (419)
T ss_pred             -----e-CccCCC----------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEEC
Confidence                 0 011111          123678899988876653         36889999888653 44332 233468999


Q ss_pred             CCCCeEEEEeCC-Cc--EEEecCCCCCC
Q 010883          457 PSQPMLVSSSWD-GD--VVRWEFPGNGE  481 (498)
Q Consensus       457 p~~~~l~s~~~D-g~--i~iw~~~~~~~  481 (498)
                      |||+.|+..+.+ +.  +.+.++++...
T Consensus       377 PDG~~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        377 SDGGSIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             CCCCEEEEEEccCCcEEEEEEecCCCee
Confidence            999977665543 33  55666655433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.09  E-value=4.1e-08  Score=82.69  Aligned_cols=194  Identities=12%  Similarity=0.029  Sum_probs=129.5

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      -+||.|+..|...+|...+.+......  ..+...|+-+.=.- ...-+..++.|.++++.+++.+..........    
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~c--d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~----  158 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQC--DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN----  158 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeee--cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc----
Confidence            579999999999999998763333222  22221222111111 12345677889999999887654322222111    


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeE-EEeccCCCeeEEEEeCCCCCEEEEeeCCC
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSL-RILAHTSDVNTVCFGDESGHLIYSGSDDN  299 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  299 (498)
                                  -.+.++++++|++++++.+....|..|.+....  .+. ......+.-.+..|+ .....+|++..||
T Consensus       159 ------------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qdg  225 (344)
T KOG4532|consen  159 ------------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQDG  225 (344)
T ss_pred             ------------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecCC
Confidence                        047889999999999999999999999886543  222 223445566788997 7788999999999


Q ss_pred             eEEEEcCccccCCCc-eeEEeccccccEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCC
Q 010883          300 LCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       300 ~i~vwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~--~l~s~~~dg~i~iwd~~~~~  356 (498)
                      ++.|||+|....... ....-..|.+.+..+.|++.|.  +|+..-.-+.+.+.|+++..
T Consensus       226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            999999985432221 1223345889999999998653  34444445679999999854

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=3.7e-09  Score=90.67  Aligned_cols=272  Identities=14%  Similarity=0.179  Sum_probs=163.1

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc--CccccccCCCCceecEEEEEEcCCC--CEEEEE
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD--GLDFSAADDGGYSFGIFSLKFSTDG--RELVAG  252 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~s~~g--~~l~~g  252 (498)
                      ..|+++.|...|.||++|...|.|.++.-....- ...+.....+  ..+|.--..-.-...|..+.|..++  ..++..
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccc-cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3699999999999999999999999998654331 1111110000  0111100000112368888888654  357777


Q ss_pred             eCCCeEEEEECCCCe-------------------------------------ee----EE-E-eccCCCeeEEEEeCCCC
Q 010883          253 SSDDCIYVYDLEANK-------------------------------------LS----LR-I-LAHTSDVNTVCFGDESG  289 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~-------------------------------------~~----~~-~-~~~~~~v~~~~~~~~~~  289 (498)
                      +.|.+|++|.+....                                     .+    .+ + ..|...++++.|+ .+.
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDK  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cch
Confidence            789999999875430                                     00    00 1 2577788999997 666


Q ss_pred             CEEEEeeCCCeEEEEcCccccCCCceeEEeccc-----cccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      +.++++ .|-.|.+|++...+... .+..+..|     ..-|++..|+|. ...+...+..|.|++-|++....-...  
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~--  260 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS--  260 (460)
T ss_pred             heeeec-cceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc--
Confidence            666554 57789999987443222 22233333     345888899995 456777788899999999853211000  


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEE
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAA  442 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~  442 (498)
                       .+..+.                ..++     ..+.....+++......|+++|+|+++-+. -+|.|||+... .++.+
T Consensus       261 -~klfe~----------------~~D~-----v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT  317 (460)
T COG5170         261 -KKLFEL----------------TIDG-----VDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT  317 (460)
T ss_pred             -hhhhhh----------------ccCc-----ccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence             000000                0000     001111112222333467889999998765 46999999864 46676


Q ss_pred             eccCC------------CCe---eeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          443 LKYHT------------SPV---RDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       443 ~~~h~------------~~v---~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      +.-|.            ..|   ..+.||-|.+.+.+|+..+..-|+-..
T Consensus       318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            65442            233   347888888899999888877777643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.07  E-value=1.5e-08  Score=85.28  Aligned_cols=195  Identities=14%  Similarity=0.052  Sum_probs=129.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc
Q 010883          245 DGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL  323 (498)
Q Consensus       245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  323 (498)
                      .-.+|+.|+..|...+|...+.+....+ ..|...|+-+.-.-....-+..++.|.++++.++.... .+..     .|.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~~-----~h~  156 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKFA-----VHN  156 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-ccce-----eec
Confidence            3347999999999999999876543333 24444433221110223345677888899888875211 1111     132


Q ss_pred             c--cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883          324 E--GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL  401 (498)
Q Consensus       324 ~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (498)
                      .  .+.++.+++|++++++.+....|.+|.+.....                                ..+..+...   
T Consensus       157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--------------------------------y~~~~~~a~---  201 (344)
T KOG4532|consen  157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--------------------------------YIENIYEAP---  201 (344)
T ss_pred             cccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--------------------------------eeeeeEecc---
Confidence            2  378899999999999999999999999886331                                111111111   


Q ss_pred             EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE-----EeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEe
Q 010883          402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-----ALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRW  474 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw  474 (498)
                        .....|...|+.....+|++..||++.|||++......     +-..|.+.++.+.|++.|.  +|...-.-+.+.+-
T Consensus       202 --t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~  279 (344)
T KOG4532|consen  202 --TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV  279 (344)
T ss_pred             --cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence              11222455677788999999999999999998754322     2236889999999999776  55555566788999


Q ss_pred             cCCCCCCC
Q 010883          475 EFPGNGEA  482 (498)
Q Consensus       475 ~~~~~~~~  482 (498)
                      |+.+....
T Consensus       280 D~R~~~~~  287 (344)
T KOG4532|consen  280 DTRNYVNH  287 (344)
T ss_pred             EcccCcee
Confidence            98877543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=7.6e-10  Score=96.18  Aligned_cols=176  Identities=22%  Similarity=0.334  Sum_probs=129.7

Q ss_pred             EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC-CCceeE
Q 010883          241 KFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAG  317 (498)
Q Consensus       241 ~~s~--~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~  317 (498)
                      +|+-  -|-+ ++.+.+-.|-+-|++++.. ..+ ...++|.++.|. ..+++++.|...|.|..+|+|+... .+.+..
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-ccc-ccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            5553  2334 4444566788999998754 233 477899999997 7789999999999999999996532 233444


Q ss_pred             EeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc
Q 010883          318 VLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK  396 (498)
Q Consensus       318 ~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (498)
                      .+ -|...|+++..-. ++++|++.+.+|+|++||++..+.                               +..+..+.
T Consensus       294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qYe  341 (425)
T KOG2695|consen  294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQYE  341 (425)
T ss_pred             EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeeee
Confidence            44 4889999988766 788999999999999999997432                               34588899


Q ss_pred             cCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC----CCeeeeEEc
Q 010883          397 GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT----SPVRDCSWH  456 (498)
Q Consensus       397 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~s  456 (498)
                      +|....+.......    +....+++++.|...+||.+.+|.++.++....    ..+.+++|.
T Consensus       342 GHvN~~a~l~~~v~----~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  342 GHVNLSAYLPAHVK----EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cccccccccccccc----cccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            99866555444333    356788889999999999999999998886332    234555553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.04  E-value=4.3e-09  Score=93.59  Aligned_cols=162  Identities=17%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCce-eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-  255 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-  255 (498)
                      .+..+..+|.+++||++..+....++++..... .........              ....+++.|..+......+..- 
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--------------~~~~~ai~~~~~~~sv~v~dkag  129 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--------------PKRPTAISFIREDTSVLVADKAG  129 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--------------ccCcceeeeeeccceEEEEeecC
Confidence            344556778888999888888877777655432 111111100              0133445555555555554444 


Q ss_pred             --CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEc
Q 010883          256 --DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSR  332 (498)
Q Consensus       256 --g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~  332 (498)
                        ..+.+|....+.+. .+.+|-+.++.++|+ +++++|+++..|..|++-...    ....+..+ .||..-|..++.-
T Consensus       130 D~~~~di~s~~~~~~~-~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~yp----a~f~IesfclGH~eFVS~isl~  203 (390)
T KOG3914|consen  130 DVYSFDILSADSGRCE-PILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYP----ATFVIESFCLGHKEFVSTISLT  203 (390)
T ss_pred             CceeeeeecccccCcc-hhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecC----cccchhhhccccHhheeeeeec
Confidence              44555555545443 344999999999998 788999999999999997765    33344443 4699999999988


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccc
Q 010883          333 GDGRYLISNGKDQAIKLWDIRKMSSNAS  360 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~  360 (498)
                      ++ ..|++++.|++|++||+++++....
T Consensus       204 ~~-~~LlS~sGD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  204 DN-YLLLSGSGDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             cC-ceeeecCCCCcEEEEecccCCcccc
Confidence            65 5699999999999999999776543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.03  E-value=6.7e-09  Score=86.93  Aligned_cols=202  Identities=19%  Similarity=0.274  Sum_probs=121.9

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---------cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      |..+.|+.+- .|+++..++.+.......+........         ...+.++-.+-+.+-.++.++++..||.+.+++
T Consensus        39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            6666776554 466666666665555444322111100         001111111112222456789999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-----SDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-----~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      .+. ......++...+.              .-.+.+....+..+.++.     .-+..+.|++...+....-......|
T Consensus       118 ~~~-~~~~~~~i~~~~~--------------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v  182 (319)
T KOG4714|consen  118 TDK-DLALMSRIPSIHS--------------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV  182 (319)
T ss_pred             chH-HHhhhhhcccccc--------------cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence            765 2111111111111              112223333444444432     12346667665443322212223459


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .+++-+|...+++++|+.||.+-+||.+..   ..+...+..|..+|+.+-|+| ++..|++++.||.+-.||..+
T Consensus       183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  183 TALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            999998888899999999999999999833   456677889999999999999 578899999999999999764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.6e-07  Score=87.10  Aligned_cols=290  Identities=12%  Similarity=0.074  Sum_probs=170.2

Q ss_pred             EEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCce
Q 010883          155 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS  234 (498)
Q Consensus       155 i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  234 (498)
                      ...|+...+...   ......++.-+-+.|||.|.||++--.-| |.+|--.+-.....+.                 |.
T Consensus       192 svfwN~~~n~p~---~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-----------------Hp  250 (698)
T KOG2314|consen  192 SVFWNSKFNEPS---LIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-----------------HP  250 (698)
T ss_pred             EEEccccCCchh---hhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-----------------CC
Confidence            456765543111   12233456778899999999999987766 7899654433322222                 21


Q ss_pred             ecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEecc--CCCe-eEEEEeCCCCCEEEEeeCCCe
Q 010883          235 FGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAH--TSDV-NTVCFGDESGHLIYSGSDDNL  300 (498)
Q Consensus       235 ~~i~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~~l~s~s~dg~  300 (498)
                       .|.-+.|||..++|++-+.           ...++|||+.+|...+.+...  ...+ .-+.|| .++.++|.-.. ..
T Consensus       251 -~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~s  327 (698)
T KOG2314|consen  251 -GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NS  327 (698)
T ss_pred             -CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEecc-ce
Confidence             5888999999999998653           256999999999988877652  2222 345787 88888887665 58


Q ss_pred             EEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCCCccccccCcccccccceee
Q 010883          301 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM  375 (498)
Q Consensus       301 i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  375 (498)
                      |.||+..    ...++..-.-.-.+|....|+|.++.||--...     ..+.+..+.+.+.....+.-..    .-..+
T Consensus       328 isIyEtp----sf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV----sDckL  399 (698)
T KOG2314|consen  328 ISIYETP----SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV----SDCKL  399 (698)
T ss_pred             EEEEecC----ceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee----eccEE
Confidence            8999875    322322222234678889999998887743321     2355555554433222211000    00011


Q ss_pred             cCCcCcccccC-----------CC--CceEEEEccCce---eEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCC
Q 010883          376 DYPPQARDLKH-----------PC--DQSVATYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVS  436 (498)
Q Consensus       376 ~~~~~~~~~~~-----------~~--~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~  436 (498)
                      .+..++..+..           .+  .-.+..+.....   ...+....+..+|-|.|..+++-+.   ..++.+|.+.+
T Consensus       400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            11111111110           00  011112222211   1122233445567788887776543   35788888773


Q ss_pred             -C---cEEEEeccCCCCeeeeEEcCCCCeEEEE---eCCCcEEEecCCC
Q 010883          437 -G---EQVAALKYHTSPVRDCSWHPSQPMLVSS---SWDGDVVRWEFPG  478 (498)
Q Consensus       437 -~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~---~~Dg~i~iw~~~~  478 (498)
                       .   +++..+.  ....+.+.|+|.|++++.+   |..|.+.++|.+.
T Consensus       480 ~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  480 NIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             CCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence             2   2344443  2567889999999988776   4578899999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.00  E-value=3.6e-06  Score=75.31  Aligned_cols=223  Identities=18%  Similarity=0.185  Sum_probs=138.4

Q ss_pred             EEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEc-CCCCEEEEEeCCCeE
Q 010883          181 DTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAGSSDDCI  258 (498)
Q Consensus       181 ~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-~~g~~l~~g~~dg~i  258 (498)
                      ++.|.+ ++.++++-...+.|..|+..++....... .                  ....+++. +++. |+++...+ +
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~------------------~~~G~~~~~~~g~-l~v~~~~~-~   62 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-P------------------GPNGMAFDRPDGR-LYVADSGG-I   62 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-S------------------SEEEEEEECTTSE-EEEEETTC-E
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-C------------------CCceEEEEccCCE-EEEEEcCc-e
Confidence            467888 56666665568899999998876533111 1                  25667777 6654 55555555 5


Q ss_pred             EEEECCCCeeeEEEec-----cCCCeeEEEEeCCCCCEEEEeeCC--------CeEEEEcCccccCCCceeEEecccccc
Q 010883          259 YVYDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEG  325 (498)
Q Consensus       259 ~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~  325 (498)
                      .++|..+++.......     .....+.+++. +++++.++....        |.|..++..      ..+..+......
T Consensus        63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~~~~~~~~~~~~  135 (246)
T PF08450_consen   63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD------GKVTVVADGLGF  135 (246)
T ss_dssp             EEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT------SEEEEEEEEESS
T ss_pred             EEEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC------CeEEEEecCccc
Confidence            6669998865444332     33567889996 788877766543        456666652      233334444566


Q ss_pred             EEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883          326 ITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL  404 (498)
Q Consensus       326 v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (498)
                      .+.|+|+|+++.|+ +-+..+.|..+++.........                           .+.+..+....  ...
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~--g~p  186 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN---------------------------RRVFIDFPGGP--GYP  186 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE---------------------------EEEEEE-SSSS--CEE
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceee---------------------------eeeEEEcCCCC--cCC
Confidence            78999999999776 5566788888888642210000                           01111111111  111


Q ss_pred             EEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc-CCCCeEEEE
Q 010883          405 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSS  465 (498)
Q Consensus       405 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~  465 (498)
                      -.    .++..+|++.++....+.|.++|.. |+.+..+......+++++|. ++.+.|+..
T Consensus       187 DG----~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  187 DG----LAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EE----EEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             Cc----ceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            11    2455589888887889999999987 99888887555689999994 665644433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=2.5e-09  Score=98.61  Aligned_cols=246  Identities=14%  Similarity=0.137  Sum_probs=159.0

Q ss_pred             eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce-eccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883          170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  248 (498)
Q Consensus       170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~  248 (498)
                      ....+|+..|..++--.+.+-+++++.|++|++|.++..-- ......          ...-..|+.+|.++.|..+.++
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaC----------QfTY~aHkk~i~~igfL~~lr~  798 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSAC----------QFTYQAHKKPIHDIGFLADLRS  798 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccccee----------eeEhhhccCcccceeeeeccce
Confidence            34567888888887777788899999999999999864211 100000          0011247779999999999888


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe---cc--CCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEe---
Q 010883          249 LVAGSSDDCIYVYDLEANKLSLRIL---AH--TSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVL---  319 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~~~~~~~~---~~--~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~---  319 (498)
                      ++++  ||.|.+||.--+.++..+.   .|  .+.|.|+.-  .+..++++| +...+|+++|.+    .......+   
T Consensus       799 i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaR----sce~~~E~kVc  870 (1034)
T KOG4190|consen  799 IASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAESTVKLFDAR----SCEWTCELKVC  870 (1034)
T ss_pred             eeec--cCcceeecccccchhHhhhcCcccCCCceeEeccc--Ccchheeeeccchhhheeeecc----cccceeeEEec
Confidence            7765  7889999988777655332   12  223344321  244555555 788999999998    44433333   


Q ss_pred             --ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883          320 --MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG  397 (498)
Q Consensus       320 --~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (498)
                        .+...-+.++++.+.|+.++++-.+|.|.+.|.+++.                                  .+..|+.
T Consensus       871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----------------------------------vINswrp  916 (1034)
T KOG4190|consen  871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----------------------------------VINSWRP  916 (1034)
T ss_pred             cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----------------------------------eeccCCc
Confidence              2345668999999999999999999999999999843                                  2222221


Q ss_pred             CceeEEEEEEEeccccCCCCcEEEEEecCCeEEE-EECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV-YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      -.       |..-.--.|..+.|+....|.++.+ |....|......+....+..-+  -.-|+.|+++.....+.+|.-
T Consensus       917 me-------cdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  917 ME-------CDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             cc-------chhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEec
Confidence            11       0000011234556777777888888 8877776665555333332211  224667888877777777753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=1.1e-07  Score=91.67  Aligned_cols=271  Identities=12%  Similarity=0.081  Sum_probs=177.9

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-----------
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-----------  246 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-----------  246 (498)
                      .-.++.|+|.| +||.|+. ..|.+.|..+-+.+.....                |...|+.+.|.|-.           
T Consensus        17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~----------------h~s~V~~VrWap~~~p~~llS~~~~   78 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIEL----------------HQSAVTSVRWAPAPSPRDLLSPSSS   78 (1062)
T ss_pred             cccccccCccc-eEEEecC-ceEEEEehhhhhhhhcccc----------------CccceeEEEeccCCCchhccCcccc
Confidence            46678899877 5666664 5688888877665544432                44579999998731           


Q ss_pred             -CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC--C-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccc
Q 010883          247 -RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE--S-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH  322 (498)
Q Consensus       247 -~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  322 (498)
                       -.||++...|.|.+||...+..+..+..|..++..++|-+.  + ..+|++-....++.+|+..    +++.+......
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd----tG~k~Wk~~ys  154 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD----TGEKFWKYDYS  154 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc----CCceeeccccC
Confidence             25777888899999999999888888889999999999632  2 3677777888899999987    77877777766


Q ss_pred             cccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883          323 LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL  401 (498)
Q Consensus       323 ~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (498)
                      .....|+.+.| |.+++..-+..|.+.+-+.-....+.....     ...+..-.-.+.........+.....-...   
T Consensus       155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk-----~~qI~sd~Sdl~~lere~at~ns~ts~~~s---  226 (1062)
T KOG1912|consen  155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK-----EFQITSDHSDLAHLERETATGNSTTSTPAS---  226 (1062)
T ss_pred             CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce-----eEEEecCccchhhhhhhhhccccccCCCcc---
Confidence            67778899988 677888888888888777654332221100     000000000000000000000000000000   


Q ss_pred             EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCC
Q 010883          402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~  478 (498)
                      ...+..+...+|+|.-+.++.......+.|+|++-..++....-..+.+.-+.|-|+.+  .|+..-.||.+.+|--..
T Consensus       227 a~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  227 AYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            00000111234677766666667778899999998888888876667777778888776  889999999999997544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.96  E-value=2.5e-06  Score=76.09  Aligned_cols=223  Identities=19%  Similarity=0.199  Sum_probs=138.0

Q ss_pred             CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCC
Q 010883          151 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  230 (498)
Q Consensus       151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
                      .+|+|..||..+|+.+............+ +. ..+++..+++++.++.|..||..+|+.............        
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--------   70 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG--------   70 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS--------
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc--------
Confidence            36899999999998887765422222222 11 233667777888999999999999987666554322111        


Q ss_pred             CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCC---CeeEEEEeCCCCCEEEEeeCCCeEEEEcC
Q 010883          231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDR  306 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~l~s~s~dg~i~vwd~  306 (498)
                           .    . ...+..+++++.++.|+.+|..+++.+.+. .....   ........ ..+..++++..++.|..+|+
T Consensus        71 -----~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~  139 (238)
T PF13360_consen   71 -----A----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDP  139 (238)
T ss_dssp             -----G----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEET
T ss_pred             -----e----e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEec
Confidence                 1    1 123446777778889999999999988774 32211   11122221 23678888888999999999


Q ss_pred             ccccCCCceeEEecccccc----------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeec
Q 010883          307 RCLNVKGKPAGVLMGHLEG----------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD  376 (498)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~----------v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  376 (498)
                      +    .++.+.........          +..-....++ .++.++.++.+..+|+.+..                    
T Consensus       140 ~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~--------------------  194 (238)
T PF13360_consen  140 K----TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE--------------------  194 (238)
T ss_dssp             T----TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE--------------------
T ss_pred             C----CCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC--------------------
Confidence            8    77776666543321          1222222344 67777777754444888732                    


Q ss_pred             CCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883          377 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA  442 (498)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  442 (498)
                                    .+  +....  ...     ......++..|++++.++.|..||+.+|+.+..
T Consensus       195 --------------~~--w~~~~--~~~-----~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  195 --------------KL--WSKPI--SGI-----YSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             --------------EE--EEECS--S-E-----CECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             --------------EE--EEecC--CCc-----cCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence                          11  11110  000     001223677888888999999999999998754

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=5e-09  Score=91.21  Aligned_cols=150  Identities=19%  Similarity=0.290  Sum_probs=112.0

Q ss_pred             EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Q 010883          192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-----  266 (498)
Q Consensus       192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-----  266 (498)
                      ++.+.+..|-+-|+++|.......                  .+.|.++.|...++++..|+.+|.|..+|++.+     
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~s------------------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~  289 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQS------------------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG  289 (425)
T ss_pred             ecccccceeEEEEeeccccccccc------------------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence            344556677788887765433321                  226888999988999999999999999999865     


Q ss_pred             eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE--EcCCCCEEEEEeCC
Q 010883          267 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKD  344 (498)
Q Consensus       267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~s~~~d  344 (498)
                      .+..++ -|.+.|+++.....++++|++.+.+|+|++||+|..+ .++-+..+.+|...-.-+-  ..+....+++++.|
T Consensus       290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD  367 (425)
T KOG2695|consen  290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD  367 (425)
T ss_pred             cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCe
Confidence            233333 7999999998875578899999999999999999443 2334888888876544433  35666788899999


Q ss_pred             CcEEEEeCCCCCCcccc
Q 010883          345 QAIKLWDIRKMSSNASC  361 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~  361 (498)
                      ...+||.++.+......
T Consensus       368 cytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             eEEEEEecccCceeecc
Confidence            99999999986544333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=8.4e-10  Score=107.14  Aligned_cols=205  Identities=21%  Similarity=0.226  Sum_probs=145.0

Q ss_pred             cccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe
Q 010883          111 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH  190 (498)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  190 (498)
                      +..+.+++.+   -..++.|+..-+|++|+.+.+.|+.|+-.|.|++|++.+|....   ....|..+|+.+.-+.||..
T Consensus      1084 r~~IFSRFr~---w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1084 RQFIFSRFRS---WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred             chhhHhhccc---chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce
Confidence            3344555544   34678999999999999999999999999999999999984333   45688889999999999998


Q ss_pred             EEEEECC--CeEEEEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883          191 LVYASMS--PIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       191 l~~~s~d--~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      +++.+..  ....+|+..+ +.....+.                    .-.++.|+.....-+.|+......+||+.++.
T Consensus      1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~--------------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFD--------------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred             eeeeccccCchHHHhccccccCcccccc--------------------ccceeehhhhHHHHHhcccccceEEEecccCc
Confidence            8876543  3578999865 11111111                    45678888765555666666679999999998


Q ss_pred             eeEEEe----ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC
Q 010883          268 LSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK  343 (498)
Q Consensus       268 ~~~~~~----~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~  343 (498)
                      ...++.    +....-++..|+ |...+++   .||  .+||++    ....++.+......+ .-.|+|+|..++..+ 
T Consensus      1218 ~l~tylt~~~~~~y~~n~a~Fs-P~D~LIl---ndG--vLWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS- 1285 (1516)
T KOG1832|consen 1218 PLQTYLTDTVTSSYSNNLAHFS-PCDTLIL---NDG--VLWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINS- 1285 (1516)
T ss_pred             HHHHhcCcchhhhhhccccccC-CCcceEe---eCc--eeeeec----cHHHHhhhhhheecc-cccccCCCceEEeec-
Confidence            766632    222233778898 5556654   444  479998    556666555433222 335999999998876 


Q ss_pred             CCcEEEEeCCCCCC
Q 010883          344 DQAIKLWDIRKMSS  357 (498)
Q Consensus       344 dg~i~iwd~~~~~~  357 (498)
                          -|||+++...
T Consensus      1286 ----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1286 ----EIWDMRTFKL 1295 (1516)
T ss_pred             ----hhhhhHHHHH
Confidence                5899998543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.92  E-value=9.2e-09  Score=98.19  Aligned_cols=264  Identities=17%  Similarity=0.172  Sum_probs=163.9

Q ss_pred             CCceEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCC
Q 010883          131 TSRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       131 ~~~v~~~~~s~dg--~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~  207 (498)
                      .-.|-.++|+|..  .+-++......-.+|++.....-......++|...|+.+.|.|.. ..+++++.|-.++.||+.+
T Consensus        67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence            3456777888864  333433344455699987654444455678899999999999965 5788999999999999987


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeC
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~  286 (498)
                      ...... ....              -......++|+-....+++.+....|.+||++.+. ++..+++|...|+.+.|+.
T Consensus       147 p~~p~y-s~~~--------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  147 PHRPFY-STSS--------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR  211 (1081)
T ss_pred             CCccee-eeec--------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence            543111 1111              11145678999766566677777889999998764 5667788999999999976


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      .....+.+++.||+|+.||.....  ...... .....+|..-.+.|-|.  ++.---.+..+.+++.++......    
T Consensus       212 ~~~s~~~s~~~d~tvkfw~y~kSt--~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n----  284 (1081)
T KOG0309|consen  212 FKYSEIMSSSNDGTVKFWDYSKST--TESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN----  284 (1081)
T ss_pred             hhhhhhcccCCCCceeeecccccc--ccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhc----
Confidence            666678899999999999986321  111111 12345566666666433  332221222444444443211100    


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEE--EEEEEec--cccCCCCcEEEEEecCCeEEEEECCC
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT--LIRCHFS--PVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                                          .....+++..|.+|.....  ..++.-.  ..+....-.|++=+.|..+++|-+.+
T Consensus       285 --------------------~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  285 --------------------VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             --------------------cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                                0011367888888874321  1111100  11222234688999999999998754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.91  E-value=2.1e-06  Score=82.61  Aligned_cols=267  Identities=12%  Similarity=-0.006  Sum_probs=156.2

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEE-----EEEeCC--CCCeEEEEECCCeEEEEECCCCceecccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-----DTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLAN  215 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~-----~~~~sp--~~~~l~~~s~d~~i~iwd~~~~~~~~~~~  215 (498)
                      +..+++++.+|.|.-+|..+|+.+.+....... ....     .+.-.|  ++..++.++.++.+..+|.++|+......
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-GWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-cccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            557777778899999999998776654332210 0000     001111  35567778889999999999998766555


Q ss_pred             ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEeCCCCC
Q 010883          216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGH  290 (498)
Q Consensus       216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~  290 (498)
                      .....            ...++    .  .+..++++..++.|+-+|..+++.+-+.......+     .+....   +.
T Consensus       148 ~~~~~------------~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~  206 (394)
T PRK11138        148 VAGEA------------LSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FG  206 (394)
T ss_pred             CCCce------------ecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CC
Confidence            33210            00111    1  13457778889999999999999877664321111     111111   23


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEecccc----c---cEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----E---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~---~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      .++.++.+|.+..+|..    .++.+.......    .   ....+..+|  .+..++.++.+|.+..+|..+++.... 
T Consensus       207 ~v~~~~~~g~v~a~d~~----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~-  281 (394)
T PRK11138        207 GAIVGGDNGRVSAVLME----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK-  281 (394)
T ss_pred             EEEEEcCCCEEEEEEcc----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe-
Confidence            56777888999888886    444333221100    0   011111122  245677777889999999887432111 


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                       ......        ..+.  .++..|+.++.+|.++.+|..+|+.+.
T Consensus       282 ---------------------------------~~~~~~--------~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W  318 (394)
T PRK11138        282 ---------------------------------REYGSV--------NDFA--VDGGRIYLVDQNDRVYALDTRGGVELW  318 (394)
T ss_pred             ---------------------------------ecCCCc--------cCcE--EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence                                             000000        0011  145678888899999999999998876


Q ss_pred             EeccCC-CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          442 ALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       442 ~~~~h~-~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      ....-. ....+...  .+..|+.++.||.|+..|..+++.
T Consensus       319 ~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        319 SQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             cccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            543211 11222222  245678888999999988877653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.90  E-value=1.6e-08  Score=84.76  Aligned_cols=175  Identities=9%  Similarity=0.101  Sum_probs=113.8

Q ss_pred             cccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883          115 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA  194 (498)
Q Consensus       115 ~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  194 (498)
                      ..+.....+.+.+..|.++-.+-+.+-.++.++++..||.+.+++.+....+..... ..|. .-.+.+....++.+.++
T Consensus        73 ~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~-~~~~-~~as~~~~~~~~~i~s~  150 (319)
T KOG4714|consen   73 WERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIP-SIHS-GSASRKICRHGNSILSG  150 (319)
T ss_pred             hhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcc-cccc-cccccceeecccEEecC
Confidence            345555566677777888888888888889999999999999999876311111111 0111 11112222344444443


Q ss_pred             EC-----CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee
Q 010883          195 SM-----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL  268 (498)
Q Consensus       195 s~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~  268 (498)
                      ..     -+..+.|+++..+.......                -...|.+++-+| +.+.+++|+.||.+-+||.+....
T Consensus       151 ~~g~~n~~d~~~a~~~~p~~t~~~~~~----------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~  214 (319)
T KOG4714|consen  151 GCGNWNAQDNFYANTLDPIKTLIPSKK----------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM  214 (319)
T ss_pred             CcceEeeccceeeeccccccccccccc----------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc
Confidence            21     12344454433221111000                011488888888 455778888999999999988643


Q ss_pred             e-EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          269 S-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       269 ~-~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                      . ..+..|+.++..+-|+|.++..|++++.||.+..||..
T Consensus       215 p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  215 PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            3 34568999999999999999999999999999999975

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.88  E-value=8.2e-08  Score=94.12  Aligned_cols=182  Identities=18%  Similarity=0.258  Sum_probs=134.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883          245 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE  324 (498)
Q Consensus       245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  324 (498)
                      ++..++.|+....+..+|+++.+..+...-..+.|.-+..   +++++.+|...|+|.+-|.+    ..+.+.++..|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence            4456777877788999999998877666555555666665   47899999999999999998    8889999999999


Q ss_pred             cEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE
Q 010883          325 GITFIDSRGDGRYLISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY  395 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (498)
                      .|..+..  .|+.|++++.         |..|+|||+|.+..........                              
T Consensus       219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~------------------------------  266 (1118)
T KOG1275|consen  219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY------------------------------  266 (1118)
T ss_pred             ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc------------------------------
Confidence            9987766  5788998875         6678999999876543321110                              


Q ss_pred             ccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC-CcE---EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883          396 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV  471 (498)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~---~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i  471 (498)
                       +.      .-..|.|.+   ...+++.+..|...+-|..+ +.+   +..+......+..+++++++..|+.+..+|.|
T Consensus       267 -~P------~flrf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v  336 (1118)
T KOG1275|consen  267 -GP------QFLRFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV  336 (1118)
T ss_pred             -Cc------hhhhhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence             00      011123332   34688888899999999433 122   23333334559999999999999999999999


Q ss_pred             EEec
Q 010883          472 VRWE  475 (498)
Q Consensus       472 ~iw~  475 (498)
                      .+|.
T Consensus       337 ~~wa  340 (1118)
T KOG1275|consen  337 NLWA  340 (1118)
T ss_pred             eeec
Confidence            9998

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.86  E-value=3.3e-06  Score=81.31  Aligned_cols=265  Identities=15%  Similarity=0.105  Sum_probs=155.0

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEE-EEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH  220 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~  220 (498)
                      ++..++.++.+|.+..+|..+|+.+.+.....    .+.+ ...  .+..++++..++.+..+|..+|+...........
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG----EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCC----ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence            34567778889999999999997665543221    1211 111  2445667778899999999999876655432110


Q ss_pred             cCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC----C---eeEEEEeC-CCCCEE
Q 010883          221 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS----D---VNTVCFGD-ESGHLI  292 (498)
Q Consensus       221 ~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~-~~~~~l  292 (498)
                        ...     .+...++.      .+..++.++.+|.+..+|..+++..........    .   ...+..+| -.+..+
T Consensus       193 --~~~-----~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v  259 (394)
T PRK11138        193 --LTL-----RGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV  259 (394)
T ss_pred             --ccc-----cCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence              000     00011221      123577778889999999999886554321100    0   00111111 024567


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY  372 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  372 (498)
                      +.++.+|.+..+|..    .++.+.....  .....+..  .+..|+.++.+|.+..+|..+........          
T Consensus       260 y~~~~~g~l~ald~~----tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~----------  321 (394)
T PRK11138        260 YALAYNGNLVALDLR----SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQS----------  321 (394)
T ss_pred             EEEEcCCeEEEEECC----CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccc----------
Confidence            778889999999987    5555443321  11112222  45677778889999999987743211100          


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD  452 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  452 (498)
                                           .. ...       ...+|..  .+.+|+.++.+|.|+++|..+|+.+...+.....+.+
T Consensus       322 ---------------------~~-~~~-------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s  370 (394)
T PRK11138        322 ---------------------DL-LHR-------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS  370 (394)
T ss_pred             ---------------------cc-CCC-------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence                                 00 000       0011111  2456788999999999999999998887644333332


Q ss_pred             -eEEcCCCCeEEEEeCCCcEEEecC
Q 010883          453 -CSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       453 -l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                       ..+  .+..|+.++.||.|+.++.
T Consensus       371 ~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        371 EPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEE--ECCEEEEEeCCceEEEEeC
Confidence             222  2447888899999988765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.86  E-value=1.6e-05  Score=71.13  Aligned_cols=197  Identities=17%  Similarity=0.147  Sum_probs=126.6

Q ss_pred             EEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC-CCCCeEEEEECCCeEEEEECCCCceecc
Q 010883          136 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESL  213 (498)
Q Consensus       136 ~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~s~d~~i~iwd~~~~~~~~~  213 (498)
                      ++.|.+ +|.++++--..+.|..|+..++....  .....    ...+++. +++++ +.+...+ +.++|..+++...+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~----~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG----PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS----EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC----CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEE
Confidence            567888 77777777778999999999874322  22222    6667777 66554 4445444 56669998876655


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILAHTSDVNTVCFG  285 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  285 (498)
                      .......           ......+++++.++|++.++....        |.|+.++.. ++... +...-...+.|+|+
T Consensus        76 ~~~~~~~-----------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s  142 (246)
T PF08450_consen   76 ADLPDGG-----------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFS  142 (246)
T ss_dssp             EEEETTC-----------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEE
T ss_pred             eeccCCC-----------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEEC
Confidence            5542110           012368999999999966665543        568888887 55433 33445667899998


Q ss_pred             CCCCCEE-EEeeCCCeEEEEcCccccCCCc---eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          286 DESGHLI-YSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       286 ~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                       ++++.| ++-+..+.|..+++........   ....+....+..-.+++..+|++.++....+.|.++|.+.
T Consensus       143 -~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  143 -PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred             -CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence             666655 5667788899999862211111   1222222223477899999999888888889999999763

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=9e-08  Score=86.46  Aligned_cols=285  Identities=11%  Similarity=0.069  Sum_probs=177.6

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCC
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG  208 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~  208 (498)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-......|...|.+++.+-++.++.+.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            55666666544 3478999999999999986542233333445677788999999999999999887 999999999886


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCC--CEEEEE-eCCCeEEEEECCCCee--eEEEeccCCCeeEEE
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAG-SSDDCIYVYDLEANKL--SLRILAHTSDVNTVC  283 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g--~~l~~g-~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~  283 (498)
                      ......+.....               ...+...++..  ..|+++ -.++.|.++|-...-+  ...-.-|..+|.++.
T Consensus        87 DminmiKL~~lP---------------g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~  151 (558)
T KOG0882|consen   87 DMINMIKLVDLP---------------GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR  151 (558)
T ss_pred             chhhhcccccCC---------------CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence            655444433321               11122222211  123333 3578899999765542  233346999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCcc-ccCCCc----------eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRC-LNVKGK----------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      ++ +-+..+++....|.|.-|.... .+....          -+..+........++.|+|++..+.+-+.|..|+++++
T Consensus       152 y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  152 YN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             ee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence            98 7788888999999999999862 110011          11112223455789999999999999999999999999


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCC-CCceE---EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSV---ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC  428 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  428 (498)
                      +++...+.............+.      ...+.+. .++.+   +.+..+....     .....|...|++|+-|+-=| 
T Consensus       231 KtGklvqeiDE~~t~~~~q~ks------~y~l~~VelgRRmaverelek~~~~~-----~~~~~fdes~~flly~t~~g-  298 (558)
T KOG0882|consen  231 KTGKLVQEIDEVLTDAQYQPKS------PYGLMHVELGRRMAVERELEKHGSTV-----GTNAVFDESGNFLLYGTILG-  298 (558)
T ss_pred             ccchhhhhhhccchhhhhcccc------ccccceeehhhhhhHHhhHhhhcCcc-----cceeEEcCCCCEEEeeccee-
Confidence            9977655543322111111100      0000000 00000   0111111111     11224566799999988777 


Q ss_pred             EEEEECCCCcEEEEe
Q 010883          429 VYVYDLVSGEQVAAL  443 (498)
Q Consensus       429 i~iwd~~~~~~~~~~  443 (498)
                      |++.++.++.++..+
T Consensus       299 ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  299 IKVINLDTNTVVRIL  313 (558)
T ss_pred             EEEEEeecCeEEEEe
Confidence            899999888776554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.84  E-value=1.9e-06  Score=76.84  Aligned_cols=224  Identities=18%  Similarity=0.150  Sum_probs=135.0

Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                      +|.|..||..+|+............              ...+. ..+++..+++++.++.|+.||..+++.+.+... .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~--------------~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~   65 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIG--------------GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-P   65 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCS--------------SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-S
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCC--------------Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-c
Confidence            6889999998888776665422110              12211 222466788888999999999999998877764 3


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-cccc---ccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHL---EGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~---~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      ..+.....  ..+..+++++.++.++.+|..    .++.+... ....   ..........++..++++..++.|..+|+
T Consensus        66 ~~~~~~~~--~~~~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  139 (238)
T PF13360_consen   66 GPISGAPV--VDGGRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP  139 (238)
T ss_dssp             SCGGSGEE--EETTEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred             ccccceee--ecccccccccceeeeEecccC----CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence            32222112  234566777788899999987    77776663 2221   11122222223778888888999999999


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee--EE---EEEEEeccccCCCCcEEEEEecCC
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL--RT---LIRCHFSPVYSTGQKYIYTGSHDS  427 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~s~~~~~l~~g~~dg  427 (498)
                      +++..                                  +-.+......  ..   .......+.+. ++ .++.++.++
T Consensus       140 ~tG~~----------------------------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g  183 (238)
T PF13360_consen  140 KTGKL----------------------------------LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG  183 (238)
T ss_dssp             TTTEE----------------------------------EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS
T ss_pred             CCCcE----------------------------------EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC
Confidence            98543                                  2222221100  00   00000111222 34 777777777


Q ss_pred             eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          428 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       428 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .+.-+|+.+++.+....  ...+..+ ...++..|+.++.++.|..||+.+++.
T Consensus       184 ~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  184 RVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             SEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             eEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            54444999999775333  2233332 345777788787999999999988753

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.84  E-value=9.2e-09  Score=62.25  Aligned_cols=39  Identities=31%  Similarity=0.669  Sum_probs=36.9

Q ss_pred             CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       437 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      ++++..+.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.79  E-value=8.6e-06  Score=83.04  Aligned_cols=218  Identities=16%  Similarity=0.111  Sum_probs=138.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      -.+.|.++.|..+++-++.+..+|.|.+-|.++...    .........|.+++||||++.++..+..+++.+-+- +-.
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~----eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~  141 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL----EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFE  141 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccce----eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-ccc
Confidence            357999999999999999999999999998877521    122233447999999999999999998887766543 111


Q ss_pred             eeccccc-------------cccccCccccccCC----------------CCceecEEEEEEcCCCCEEEEE-----eCC
Q 010883          210 MESLANV-------------TEIHDGLDFSAADD----------------GGYSFGIFSLKFSTDGRELVAG-----SSD  255 (498)
Q Consensus       210 ~~~~~~~-------------~~~~~~~~~~~~~~----------------~~h~~~i~~~~~s~~g~~l~~g-----~~d  255 (498)
                      .+....+             .-.....+|.....                ......=+++.|--||.++|+.     ...
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence            1111111             00000001110000                0011223458999999999883     233


Q ss_pred             CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                      ..|+|||-+ +.+-..-....+.-.+++|- |.|.++++-.   .|+.|.+|..+... .+.....+......+..++|+
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccchheeeec
Confidence            789999987 44433333334455789997 6788887754   45679999864222 222222233333448999999


Q ss_pred             CCCCEEEE---EeCCCcEEEEeCCCC
Q 010883          333 GDGRYLIS---NGKDQAIKLWDIRKM  355 (498)
Q Consensus       333 ~~~~~l~s---~~~dg~i~iwd~~~~  355 (498)
                      .++..|++   ......|++|-+.+.
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEecCe
Confidence            99999987   445556999998763

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=8.3e-06  Score=72.37  Aligned_cols=234  Identities=18%  Similarity=0.156  Sum_probs=143.4

Q ss_pred             EEEEEeCC-CCCeEEEEECCC-eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--
Q 010883          179 VTDTSLSP-DQRHLVYASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--  254 (498)
Q Consensus       179 v~~~~~sp-~~~~l~~~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--  254 (498)
                      ...++.+| ....++.+-.-| ...+||..+++...........   .|     .|      ...|++||++|++.-.  
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR---HF-----yG------Hg~fs~dG~~LytTEnd~   72 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR---HF-----YG------HGVFSPDGRLLYTTENDY   72 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC---EE-----ec------CEEEcCCCCEEEEecccc
Confidence            34578899 556667777766 5789999998876544332211   11     12      3589999999988643  


Q ss_pred             ---CCeEEEEECC-CCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC------------------CCeEEEEcCccccCC
Q 010883          255 ---DDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD------------------DNLCKVWDRRCLNVK  312 (498)
Q Consensus       255 ---dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~------------------dg~i~vwd~~~~~~~  312 (498)
                         .|.|-|||.. +-+.+..+..|.-....+.+. +++..|+++..                  +.++.+.|..    +
T Consensus        73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~----s  147 (305)
T PF07433_consen   73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR----S  147 (305)
T ss_pred             CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC----C
Confidence               5789999998 566677777777777788887 77766666532                  2234444444    5


Q ss_pred             CceeEE--e--ccccccEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883          313 GKPAGV--L--MGHLEGITFIDSRGDGRYLISNGKDQA-------IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA  381 (498)
Q Consensus       313 ~~~~~~--~--~~~~~~v~~l~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (498)
                      +..+..  +  ..|.-.|..+++.++|..++..-..|.       |.+++...                           
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---------------------------  200 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---------------------------  200 (305)
T ss_pred             CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---------------------------
Confidence            555554  3  236678999999998876665544332       22222111                           


Q ss_pred             ccccCCCCceEEEEccCce-eEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCC
Q 010883          382 RDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ  459 (498)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~  459 (498)
                               .+..+..... ........-++++++++.++++.+- -|.+.+||..+++.+....-  ..+..++-.+++
T Consensus       201 ---------~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~  269 (305)
T PF07433_consen  201 ---------ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG  269 (305)
T ss_pred             ---------cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence                     1111111100 0111112233456668887766665 67899999999999877653  346677777676


Q ss_pred             CeEEEEeCCCcE
Q 010883          460 PMLVSSSWDGDV  471 (498)
Q Consensus       460 ~~l~s~~~Dg~i  471 (498)
                       +++|.+. |.+
T Consensus       270 -f~~ssG~-G~~  279 (305)
T PF07433_consen  270 -FLVSSGQ-GQL  279 (305)
T ss_pred             -eEEeCCC-ccE
Confidence             6666654 543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.78  E-value=2e-06  Score=82.52  Aligned_cols=153  Identities=17%  Similarity=0.192  Sum_probs=108.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      |...|.--+++..+++++.|+.-|.+++|+-..+.....  ...+..+.+..+..+++..++|.|+..|.|.++-+..+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            345566667888899999999999999999887632221  222244467777889999999999999999999887643


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccCCCeeEEEEe
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFG  285 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~  285 (498)
                      .......          ...+..|...|++++|++++..+++|...|.|..-.+....    ....+....+.|-.+.+.
T Consensus       110 p~~~~~~----------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  110 PRDLDYV----------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CCcceee----------ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            3222222          12223477899999999999999999999999988887721    123344556778888774


Q ss_pred             CCCCCEEEEee
Q 010883          286 DESGHLIYSGS  296 (498)
Q Consensus       286 ~~~~~~l~s~s  296 (498)
                        ++.+|++..
T Consensus       180 --q~~LLVStl  188 (726)
T KOG3621|consen  180 --QSYLLVSTL  188 (726)
T ss_pred             --cceehHhhh
Confidence              344554443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.4e-06  Score=77.95  Aligned_cols=237  Identities=19%  Similarity=0.200  Sum_probs=134.3

Q ss_pred             CceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883          232 GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN  310 (498)
Q Consensus       232 ~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~  310 (498)
                      ++...|.+++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-.+.++|++|...|.|.+||++.. 
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~-  268 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP-  268 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC-
Confidence            4556899999999776 7888999999999999999998888777 889999998677889999999999999999833 


Q ss_pred             CCCceeEEecc--ccccEEEEEEc------CCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccc----c------cc
Q 010883          311 VKGKPAGVLMG--HLEGITFIDSR------GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE----W------DY  372 (498)
Q Consensus       311 ~~~~~~~~~~~--~~~~v~~l~~~------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~------~~  372 (498)
                        ..++..+.+  ...+|..++.-      +.+.+|+....+  +..|++.................    .      +.
T Consensus       269 --~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh  344 (463)
T KOG1645|consen  269 --EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH  344 (463)
T ss_pred             --CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence              223333332  22344444322      234444444433  56676654333222211110000    0      00


Q ss_pred             eeecCCc-----CcccccC----CCCceEEEE-ccCceeEEEEEEEeccc--cCCCCcEEEE-EecCCeEEEEECCCCcE
Q 010883          373 RWMDYPP-----QARDLKH----PCDQSVATY-KGHSVLRTLIRCHFSPV--YSTGQKYIYT-GSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       373 ~~~~~~~-----~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~--~s~~~~~l~~-g~~dg~i~iwd~~~~~~  439 (498)
                      -.+.+.+     ..+.+..    ..+..+..- .++.. .........++  -.++.++|+. |...+.+.+||..+.+.
T Consensus       345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~G-s~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev  423 (463)
T KOG1645|consen  345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFG-SKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV  423 (463)
T ss_pred             EEEEecCCCCCccceeeeeeeccccCceeeeecccccC-CcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence            0011111     0000000    000011000 00000 00000000011  1234455554 45567899999999999


Q ss_pred             EEEeccCCCCeeeeEEcCC-CC-eEEEEeCCCcEEEecCC
Q 010883          440 VAALKYHTSPVRDCSWHPS-QP-MLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       440 ~~~~~~h~~~v~~l~~sp~-~~-~l~s~~~Dg~i~iw~~~  477 (498)
                      +.++.- ..+|.+++.... +. +|++-. |..++||..+
T Consensus       424 vQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  424 VQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            999874 478888876543 33 666664 5678888754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.70  E-value=4e-06  Score=85.36  Aligned_cols=236  Identities=17%  Similarity=0.198  Sum_probs=138.4

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ..|.++.|..+...++.+...|.|.+-|.++......-.+.                 .+|.+++|+||+..++..+..+
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd-----------------~GI~aaswS~Dee~l~liT~~~  131 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD-----------------NGISAASWSPDEELLALITGRQ  131 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc-----------------CceEEEeecCCCcEEEEEeCCc
Confidence            57999999999999999999999999988877654443332                 2799999999999999998888


Q ss_pred             eEEEEECCCCeeeEEEe-----ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883          257 CIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS  331 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~  331 (498)
                      ++.+-+- +-.++....     ...+..-.+-|. ..... +-|+. |.....+...   ..+...... ..+.=++|.|
T Consensus       132 tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwG-rkeTq-frgs~-gr~~~~~~~~---~ek~~~~~~-~~~~~~~IsW  203 (1265)
T KOG1920|consen  132 TLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWG-RKETQ-FRGSE-GRQAARQKIE---KEKALEQIE-QDDHKTSISW  203 (1265)
T ss_pred             EEEEEec-cccchhccccccccccccccceeccc-cccee-eecch-hhhccccccc---ccccccchh-hccCCceEEE
Confidence            7766532 222221111     112233445553 21111 12221 2222211110   001001011 1223357899


Q ss_pred             cCCCCEEEEEe----CC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          332 RGDGRYLISNG----KD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       332 ~~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      ..||+++++..    .+ +.|++||-.. ......                                        .+...
T Consensus       204 RgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~s----------------------------------------e~~~~  242 (1265)
T KOG1920|consen  204 RGDGEYFAVSFVESETGTRKIRVYDREG-ALNSTS----------------------------------------EPVEG  242 (1265)
T ss_pred             ccCCcEEEEEEEeccCCceeEEEecccc-hhhccc----------------------------------------Ccccc
Confidence            99999998732    23 7899999762 111100                                        00111


Q ss_pred             EEeccccCCCCcEEEEEe---cCCeEEEEECCC---CcEEEEeccCCCCeeeeEEcCCCCeEEE---EeCCCcEEEecCC
Q 010883          407 CHFSPVYSTGQKYIYTGS---HDSCVYVYDLVS---GEQVAALKYHTSPVRDCSWHPSQPMLVS---SSWDGDVVRWEFP  477 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~sp~~~~l~s---~~~Dg~i~iw~~~  477 (498)
                      ..-+.+|-|.|..+++-.   .|+.|.+|.-+.   |+....+.....+|..++|+.++..|++   ......|++|-+.
T Consensus       243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             cccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence            112234556788887753   356799998532   2222233334455999999999998887   4455559999875


Q ss_pred             C
Q 010883          478 G  478 (498)
Q Consensus       478 ~  478 (498)
                      +
T Consensus       323 N  323 (1265)
T KOG1920|consen  323 N  323 (1265)
T ss_pred             C
Confidence            4

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.69  E-value=4.6e-05  Score=69.94  Aligned_cols=195  Identities=18%  Similarity=0.168  Sum_probs=99.8

Q ss_pred             EEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc
Q 010883          137 SQFSADGSLFVAGFQ-A--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  213 (498)
Q Consensus       137 ~~~s~dg~~la~~~~-d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~  213 (498)
                      -+|.+||+.|+.++. |  ..+.+.|+.+++..+-. ...+  .......++|+++.++.......|+-.|+.+.+...+
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence            368999987776665 4  45777788888443322 2111  1222466789999988877777899999999887666


Q ss_pred             ccccccccCccccccCCCCceecEEEEEE--cCCCCEEEEEe----------------------CCCeEEEEECCCCeee
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGS----------------------SDDCIYVYDLEANKLS  269 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--s~~g~~l~~g~----------------------~dg~i~vwd~~~~~~~  269 (498)
                      ...+...                +-...|  +.|+..++-.-                      ....|.-.|+.+++..
T Consensus       118 y~~p~~~----------------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~  181 (386)
T PF14583_consen  118 YEVPDDW----------------KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK  181 (386)
T ss_dssp             EE--TTE----------------EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred             EECCccc----------------ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence            6655422                222333  33555543321                      1234666788888764


Q ss_pred             EEEeccCCCeeEEEEeCCCCCEEEEeeC---CC-eEEEEcCccccCCCceeEEecccc--ccEEEEEEcCCCCEEEEEe-
Q 010883          270 LRILAHTSDVNTVCFGDESGHLIYSGSD---DN-LCKVWDRRCLNVKGKPAGVLMGHL--EGITFIDSRGDGRYLISNG-  342 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg-~i~vwd~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~-  342 (498)
                      ..+ .....+..+.|+|.++.+|+-|-.   +. .-+||-++..   +.....+..+.  ..+..=-|.|||..|.--+ 
T Consensus       182 ~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d---g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~  257 (386)
T PF14583_consen  182 VVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD---GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY  257 (386)
T ss_dssp             EEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT---S---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred             EEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC---CCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence            433 556778899999988888888654   33 2477776632   22233333232  3344455899998765422 


Q ss_pred             ----CCCcEEEEeCCC
Q 010883          343 ----KDQAIKLWDIRK  354 (498)
Q Consensus       343 ----~dg~i~iwd~~~  354 (498)
                          .+..|.-+|+.+
T Consensus       258 ~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  258 TPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             ETTT--EEEEEE-TTT
T ss_pred             cCCCCceEEEeeCCCC
Confidence                233456666655

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.64  E-value=7.6e-05  Score=63.31  Aligned_cols=141  Identities=15%  Similarity=0.125  Sum_probs=92.1

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      ..+++.|+..+.+.--|..+|..+.+.....    .|.+-+.. -|++++.|...|.+.+.+..+|.....+...+..  
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~----RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v--   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV--   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCc----eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence            3577888888888888998886665543222    33333322 4777999999999999999999765554433211  


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEE
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK  302 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  302 (498)
                                   .+ .....+++..+..|+.|++.+..|..+..++...+...+-..+-+.. +...-|+.+...|.|.
T Consensus        96 -------------k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~-~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen   96 -------------KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIA-PGDGSLYAAITAGAVL  160 (354)
T ss_pred             -------------cc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceec-CCCceEEEEeccceEE
Confidence                         11 13445688899999999999999999998887765433333334444 3233344455555554


Q ss_pred             EEc
Q 010883          303 VWD  305 (498)
Q Consensus       303 vwd  305 (498)
                      --.
T Consensus       161 avt  163 (354)
T KOG4649|consen  161 AVT  163 (354)
T ss_pred             EEc
Confidence            433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.62  E-value=3.3e-05  Score=69.46  Aligned_cols=279  Identities=17%  Similarity=0.159  Sum_probs=158.2

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEEEEECCCCceeccccccccccC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      +.+.|+|.++++.+-......     .-.+..+|+++.+.+++          ..-.|.+||..+-.......++..+..
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF-----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES-----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeeccc-----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            479999999986555433222     23366799999888754          234799999999877666555543111


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL  300 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~  300 (498)
                      ...         .....++++.||+++++..  -..+|.|.|+..++.+..+...  . +...| |..+.-|.+-+.||.
T Consensus        92 ~~~---------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G-C~~iy-P~~~~~F~~lC~DGs  158 (342)
T PF06433_consen   92 QVV---------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G-CWLIY-PSGNRGFSMLCGDGS  158 (342)
T ss_dssp             -BS-----------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S-EEEEE-EEETTEEEEEETTSC
T ss_pred             eec---------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C-EEEEE-ecCCCceEEEecCCc
Confidence            100         0223468899999888764  3567999999999988777432  1 22233 444566888899999


Q ss_pred             EEEEcCccccCCCceeEE----eccccccE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceee
Q 010883          301 CKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM  375 (498)
Q Consensus       301 i~vwd~~~~~~~~~~~~~----~~~~~~~v-~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  375 (498)
                      +.-..+..   .++....    +....+++ ..-++...+..++--+.+|.|+--|+.........       .|..   
T Consensus       159 l~~v~Ld~---~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-------~~~~---  225 (342)
T PF06433_consen  159 LLTVTLDA---DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-------PWSL---  225 (342)
T ss_dssp             EEEEEETS---TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-------EEES---
T ss_pred             eEEEEECC---CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-------cccc---
Confidence            98888762   2332211    11112222 22334445555666778888888888764311100       0000   


Q ss_pred             cCCcCc-ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--------C--CeEEEEECCCCcEEEEec
Q 010883          376 DYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------D--SCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       376 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------d--g~i~iwd~~~~~~~~~~~  444 (498)
                       +.... ..-..+.+-.+.                  ++.+..+.|++--.        |  ..|.++|+.+++.+.++.
T Consensus       226 -~t~~e~~~~WrPGG~Q~~------------------A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~  286 (342)
T PF06433_consen  226 -LTDAEKADGWRPGGWQLI------------------AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP  286 (342)
T ss_dssp             -S-HHHHHTTEEE-SSS-E------------------EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE
T ss_pred             -cCccccccCcCCcceeee------------------eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe
Confidence             00000 000000000111                  12222222222111        1  148888999999999987


Q ss_pred             cCCCCeeeeEEcCCCC-eEEEE-eCCCcEEEecCCCCCCC
Q 010883          445 YHTSPVRDCSWHPSQP-MLVSS-SWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       445 ~h~~~v~~l~~sp~~~-~l~s~-~~Dg~i~iw~~~~~~~~  482 (498)
                      . ..++.+++.+.+.+ +|++. ..++.|.+||..+++..
T Consensus       287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             E-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             C-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            3 34688999999877 66655 45899999999987543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=6.6e-07  Score=81.06  Aligned_cols=265  Identities=14%  Similarity=0.058  Sum_probs=165.2

Q ss_pred             CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      |+..|+.+ +..-.+++.+++.||.++.|.-..-..........             .|-..|.+++.+-++..+.+.+.
T Consensus         8 hrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-------------aHL~~I~sl~~S~dg~L~~Sv~d   73 (558)
T KOG0882|consen    8 HRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-------------AHLGVILSLAVSYDGWLFRSVED   73 (558)
T ss_pred             ccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhH-------------HHHHHHHhhhccccceeEeeccC
Confidence            44455544 33457889999999999999754422222222211             35567889999999999999777


Q ss_pred             -CCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCC--CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          255 -DDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       255 -dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                       |..++++|+++-..+..+.  .-.+.+..+ .++.+.  .+-++.-.+|.+.++|-...  .......-.-|..+|..+
T Consensus        74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i  150 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKI  150 (558)
T ss_pred             cccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCC--cCccceecccccCceEEE
Confidence             9999999998765543322  222222222 121111  23333446789999997622  123334445689999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      .+++-+..+++....|.|.-|.....-..+.     ....|.+.              .+..+..+..      ......
T Consensus       151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr-----~~l~~~~K--------------~eTdLy~f~K------~Kt~pt  205 (558)
T KOG0882|consen  151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPR-----TNLNFELK--------------HETDLYGFPK------AKTEPT  205 (558)
T ss_pred             EeeccccceeeccccceeEeecCCCcccCcc-----cccccccc--------------ccchhhcccc------cccCcc
Confidence            9999999999999999999999873100000     00000000              0000000000      001112


Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--------------------------------cCC-CCeeeeEEc
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--------------------------------YHT-SPVRDCSWH  456 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------------------~h~-~~v~~l~~s  456 (498)
                      +..|+|++..+.+-+.|..|++++..+|+.+..+.                                .|. ..-+.+.|.
T Consensus       206 s~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd  285 (558)
T KOG0882|consen  206 SFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD  285 (558)
T ss_pred             ceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence            33577899999999999999999999987655432                                111 233567888


Q ss_pred             CCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          457 PSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       457 p~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ..+++|+-++-=| |++.++.++...
T Consensus       286 es~~flly~t~~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  286 ESGNFLLYGTILG-IKVINLDTNTVV  310 (558)
T ss_pred             CCCCEEEeeccee-EEEEEeecCeEE
Confidence            8899998887655 788888777544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.60  E-value=2.1e-05  Score=69.82  Aligned_cols=196  Identities=21%  Similarity=0.247  Sum_probs=122.7

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-  195 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-  195 (498)
                      .....+-+|      -.||+||++|++.-.     .|.|-|||...+  +.+.-....+.-....+.+.|||+.|+++. 
T Consensus        47 ~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANG  118 (305)
T PF07433_consen   47 PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANG  118 (305)
T ss_pred             CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence            444555666      479999999998643     578999999954  333334444444567788999998888763 


Q ss_pred             -----------------CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC--
Q 010883          196 -----------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--  256 (498)
Q Consensus       196 -----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg--  256 (498)
                                       ++..+...|..+|+......++..            -|.-.|..+++.++|..++..-..|  
T Consensus       119 GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~------------~~~lSiRHLa~~~~G~V~~a~Q~qg~~  186 (305)
T PF07433_consen  119 GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD------------LHQLSIRHLAVDGDGTVAFAMQYQGDP  186 (305)
T ss_pred             CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc------------ccccceeeEEecCCCcEEEEEecCCCC
Confidence                             223455566666666554443221            2445799999999997555543332  


Q ss_pred             -----eEEEEECCCCeeeEEE-------eccCCCeeEEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCceeEEecccc
Q 010883          257 -----CIYVYDLEANKLSLRI-------LAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL  323 (498)
Q Consensus       257 -----~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  323 (498)
                           .|.+++...  ....+       ..-...+-+|+++ .++.++ +|+-.-+.+.+||..    ++..+....  .
T Consensus       187 ~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~----tg~~~~~~~--l  257 (305)
T PF07433_consen  187 GDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAA----TGRLLGSVP--L  257 (305)
T ss_pred             CccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECC----CCCEeeccc--c
Confidence                 244444332  22222       1345789999998 666655 555567789999987    666655443  3


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883          324 EGITFIDSRGDGRYLISNGKDQAIK  348 (498)
Q Consensus       324 ~~v~~l~~~~~~~~l~s~~~dg~i~  348 (498)
                      ..+..++..+++ ++++.+ .|.+.
T Consensus       258 ~D~cGva~~~~~-f~~ssG-~G~~~  280 (305)
T PF07433_consen  258 PDACGVAPTDDG-FLVSSG-QGQLI  280 (305)
T ss_pred             CceeeeeecCCc-eEEeCC-CccEE
Confidence            456677777666 555444 44433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=1.4e-07  Score=56.94  Aligned_cols=38  Identities=34%  Similarity=0.576  Sum_probs=36.1

Q ss_pred             ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883          314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       314 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  351 (498)
                      +++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.56  E-value=2.1e-06  Score=84.54  Aligned_cols=187  Identities=17%  Similarity=0.132  Sum_probs=134.6

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  221 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (498)
                      ++..++.|+-...+..+|+.+.+.........   ..|+-++.  +++++.+|...|+|.+-|..+.+.+..+.      
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------  214 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------  214 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccC---CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee------
Confidence            44567778777788899998874444322211   13555544  78999999999999999998877655443      


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  292 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  292 (498)
                                .|++.|.++..  .|+.|++++.         |.-|.|||++.-+.+.-+.-+.++ .-+.|.|.-...+
T Consensus       215 ----------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~  281 (1118)
T KOG1275|consen  215 ----------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRL  281 (1118)
T ss_pred             ----------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceE
Confidence                      57777876655  5888998875         455899999887766555444444 5677887778889


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      ++++..|...+-|..........+..+......+..++++++++.++.|..+|.|.+|.-
T Consensus       282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            999999999999954322122223333334456999999999999999999999999983

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=6e-06  Score=80.47  Aligned_cols=140  Identities=15%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-----CCeEEEEECCCeEEEEECCC-Cceecccc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGS-GTMESLAN  215 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~s~d~~i~iwd~~~-~~~~~~~~  215 (498)
                      +|.++++|+.||+|.|-.+.++.......    ...++.+++++|+     .+.+++|+..| +.++.-.= +.....  
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--  154 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--  154 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--
Confidence            49999999999999999998875544332    2337999999998     57889999888 66664221 000000  


Q ss_pred             ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC------eeEEEEeCCCC
Q 010883          216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD------VNTVCFGDESG  289 (498)
Q Consensus       216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~  289 (498)
                        ..           ....++|.++.|.  |+++|-++.+| |+|||+.+++.+..+......      ...+.|. + .
T Consensus       155 --~l-----------~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~-~  216 (846)
T KOG2066|consen  155 --VL-----------SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-D-E  216 (846)
T ss_pred             --ee-----------ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-C-C
Confidence              00           0234589999996  77888888887 999999999887776533332      3457775 3 4


Q ss_pred             CEEEEeeCCCeEEEEcCc
Q 010883          290 HLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       290 ~~l~s~s~dg~i~vwd~~  307 (498)
                      ..|+.| ..-+|+|..++
T Consensus       217 ~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  217 DRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CeEEEe-cCCeEEEEEEe
Confidence            455555 44478888876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=4e-05  Score=75.53  Aligned_cols=206  Identities=12%  Similarity=0.100  Sum_probs=125.5

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCcee-EEEEEeCCCCCeEEEEECCC-----eEEEEECCCCce
Q 010883          137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM  210 (498)
Q Consensus       137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~s~d~-----~i~iwd~~~~~~  210 (498)
                      -+|++.+..+|.|+.+|.|.+++-.  ....  .....+... |..+-...+..+|++.+.|+     .++||+++.-+.
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s--~~~~--~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS--FQLI--RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc--ceee--ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            3577888999999999987776643  2221  122333334 44444444457888877654     599999875432


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCeeeEE--EeccCCCeeEEEEeC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD--LEANKLSLR--ILAHTSDVNTVCFGD  286 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd--~~~~~~~~~--~~~~~~~v~~~~~~~  286 (498)
                      .........+.-.   .........++.+++.+.+-+.+|+|-.+|.|..+.  +...+-.+.  ......+|+.+++. 
T Consensus       105 n~sP~c~~~~ri~---~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~-  180 (933)
T KOG2114|consen  105 NNSPQCLYEHRIF---TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR-  180 (933)
T ss_pred             CCCcceeeeeeee---ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-
Confidence            1111111000000   000111334889999999999999999999999883  222221122  22345799999997 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .++..++.......|.+|.+..   .......+..|...+.|..+++....+++++. ..+.+||...
T Consensus       181 ~d~~s~lFv~Tt~~V~~y~l~g---r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~  244 (933)
T KOG2114|consen  181 SDGKSVLFVATTEQVMLYSLSG---RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG  244 (933)
T ss_pred             cCCceeEEEEecceeEEEEecC---CCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence            5555533344456899999861   22234456777788999999876665665544 4699999875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=1.1e-07  Score=92.95  Aligned_cols=118  Identities=17%  Similarity=0.240  Sum_probs=90.6

Q ss_pred             CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC--eEEEEcCccc
Q 010883          232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCL  309 (498)
Q Consensus       232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~  309 (498)
                      .|+...+|++|+-+.++|++|+..|.|+++++.+|........|.++|+.+.-+ .++..+++.+.-.  ...+|++.. 
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~s- 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDASS- 1176 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc-CCcceeeeeccccCchHHHhcccc-
Confidence            456689999999999999999999999999999999999999999999999987 6666666554433  577899862 


Q ss_pred             cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                        .+.+.+.+.    .-.++.|+.....-+.|.......+||+.+...
T Consensus      1177 --~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1177 --TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred             --ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcH
Confidence              344444443    234678887655555566666799999998543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.48  E-value=0.00036  Score=68.97  Aligned_cols=278  Identities=14%  Similarity=0.116  Sum_probs=153.2

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCC---CceeEE--EEEeCCCCCeEEEEECCCeEEEEECCCCceecccccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKS---LRWTVT--DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT  217 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~---~~~~v~--~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~  217 (498)
                      +..++.++.++.|.-.|..+|+.+.+......   ....+.  .+... ++..++.++.++.|.-+|.++|+........
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            34566677789999999999866655432211   000010  01111 2267778888999999999999887665543


Q ss_pred             ccccCccccccCCCCceecEE-EEEEcCCCCEEEEEe---------CCCeEEEEECCCCeeeEEEeccCCC---------
Q 010883          218 EIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGS---------SDDCIYVYDLEANKLSLRILAHTSD---------  278 (498)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~i~-~~~~s~~g~~l~~g~---------~dg~i~vwd~~~~~~~~~~~~~~~~---------  278 (498)
                      ....           ....+. +..+. + ..++.++         .+|.|+.+|..+++.+-++......         
T Consensus       140 ~~~~-----------~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~  206 (488)
T cd00216         140 DQVP-----------PGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP  206 (488)
T ss_pred             CCcC-----------cceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence            2100           000010 11111 2 3455543         3678999999999987766432110         


Q ss_pred             -----------e-eEEEEeCCCCCEEEEeeCCC------------------eEEEEcCccccCCCceeEEeccccccEE-
Q 010883          279 -----------V-NTVCFGDESGHLIYSGSDDN------------------LCKVWDRRCLNVKGKPAGVLMGHLEGIT-  327 (498)
Q Consensus       279 -----------v-~~~~~~~~~~~~l~s~s~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~~~v~-  327 (498)
                                 + ...++. +.+.+++.++.++                  .|.-+|..    +++.+-.+..-..... 
T Consensus       207 ~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~  281 (488)
T cd00216         207 DRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWD  281 (488)
T ss_pred             CcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCcc
Confidence                       1 122332 3456777777665                  68888887    6666655432111100 


Q ss_pred             -----EEEEc----CCCC---EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE
Q 010883          328 -----FIDSR----GDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY  395 (498)
Q Consensus       328 -----~l~~~----~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (498)
                           ...+.    -++.   .++.++.+|.+...|.++++..-.....                               
T Consensus       282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------------------------------  330 (488)
T cd00216         282 YDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------------------------------  330 (488)
T ss_pred             cccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------------------------------
Confidence                 00110    1333   5778888999999999885533221100                               


Q ss_pred             ccCceeEEEEEEEeccccCCCCcEEEE------------------EecCCeEEEEECCCCcEEEEeccCC--------CC
Q 010883          396 KGHSVLRTLIRCHFSPVYSTGQKYIYT------------------GSHDSCVYVYDLVSGEQVAALKYHT--------SP  449 (498)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------g~~dg~i~iwd~~~~~~~~~~~~h~--------~~  449 (498)
                                  ...+..+|  ..++.                  ...+|.|.-.|+.+|+.+.......        .+
T Consensus       331 ------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~  396 (488)
T cd00216         331 ------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP  396 (488)
T ss_pred             ------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence                        00011111  11221                  2246778888888888877665321        11


Q ss_pred             eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          450 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       450 v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      ...-.....+..|+.++.||.|+.+|..+++....
T Consensus       397 ~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~  431 (488)
T cd00216         397 HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK  431 (488)
T ss_pred             ccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence            11111112456788888999999999988876544

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.48  E-value=0.0001  Score=69.70  Aligned_cols=107  Identities=19%  Similarity=0.211  Sum_probs=62.6

Q ss_pred             cCCCCEEEEEE---------CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          140 SADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       140 s~dg~~la~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      |||+++++...         ..+.+.|||+.++.... +...   ...+....|||+|+.++... ++.|.+++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            68999888743         24678999999973322 2111   34688899999999999886 57899999888755


Q ss_pred             ecccccccc--ccCcc-ccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883          211 ESLANVTEI--HDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGS  253 (498)
Q Consensus       211 ~~~~~~~~~--~~~~~-~~~~~~~~h~~~i~~~~~s~~g~~l~~g~  253 (498)
                      ..+..-...  ..+.. +.....  --..-..+.|||||++||...
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEE--v~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEE--VFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHH--TSSSSBSEEE-TTSSEEEEEE
T ss_pred             EEeccccceeEEcCccceecccc--ccccccceEECCCCCEEEEEE
Confidence            444332200  00000 000000  000124588999999888754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.48  E-value=3.6e-06  Score=79.67  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=64.6

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      .+.+.|.|++++|+...|+.|+.||.|.+||...+...  ..   ...-.++.++|+|+|..+++|+..|.+.+||+.-+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--ee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            56889999999999999999999999999999876222  11   22336889999999999999999999999998755


Q ss_pred             ce
Q 010883          209 TM  210 (498)
Q Consensus       209 ~~  210 (498)
                      ..
T Consensus       332 pi  333 (545)
T PF11768_consen  332 PI  333 (545)
T ss_pred             cc
Confidence            43

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.46  E-value=9.1e-05  Score=64.93  Aligned_cols=211  Identities=15%  Similarity=0.159  Sum_probs=116.4

Q ss_pred             CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      .+.+.+....+..++|+|+.+ ++++....+.|..++.+ |+.+.+. ...+. +..-.|++.-++.++++.-.++.+.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-PLDGF-GDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-E-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-eCCCC-CCceeEEEECCCEEEEEEcCCCcEEE
Confidence            345666777899999999865 55566667888888874 5555554 33332 35788889888877776656899999


Q ss_pred             EECCCCce-eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeeeEE--Ee---
Q 010883          203 VDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLR--IL---  273 (498)
Q Consensus       203 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~---~~~~~~--~~---  273 (498)
                      +++..... ..........  +.+    ...+...+-.++|.+.++.|+++-...-..+|.+..   ......  ..   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~--l~~----~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKIS--LGF----PNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             EEE----TT--EEEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             EEEeccccccchhhceEEe--ccc----ccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence            99854321 1111111110  001    112334689999999888787777766666666543   111111  11   


Q ss_pred             ---ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc---------ccEEEEEEcCCCCEEEEE
Q 010883          274 ---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISN  341 (498)
Q Consensus       274 ---~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~s~  341 (498)
                         .....+.++++.|..+++++....+..|..+|.     .++++..+.-..         ...-.|++.++|++.+++
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence               234568899999888999999999999999996     566555443221         246789999999766554


Q ss_pred             eCCCcEEE
Q 010883          342 GKDQAIKL  349 (498)
Q Consensus       342 ~~dg~i~i  349 (498)
                       .-+..++
T Consensus       240 -EpNlfy~  246 (248)
T PF06977_consen  240 -EPNLFYR  246 (248)
T ss_dssp             -TTTEEEE
T ss_pred             -CCceEEE
Confidence             4443433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.44  E-value=4.9e-05  Score=74.03  Aligned_cols=257  Identities=16%  Similarity=0.182  Sum_probs=135.4

Q ss_pred             EEEEECCCeEEEEECCCCeEEEEEeecCCCc----------eeEE-----------------EEEeC---CCCCeEEEEE
Q 010883          146 FVAGFQASQIRIYDVERGWKIQKDILAKSLR----------WTVT-----------------DTSLS---PDQRHLVYAS  195 (498)
Q Consensus       146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------~~v~-----------------~~~~s---p~~~~l~~~s  195 (498)
                      |.+|+..|.|+|+-+.+...+..+.......          ..|.                 .+++.   .||++|..-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            6678888999999888875555433221100          0010                 01111   2677887766


Q ss_pred             C-CCeEEEEECCCCceeccccccccccC--ccccccCCCCceecEEE-----EEEcCCCCEEEEE-eCCCeEEEEECCCC
Q 010883          196 M-SPIVHIVDVGSGTMESLANVTEIHDG--LDFSAADDGGYSFGIFS-----LKFSTDGRELVAG-SSDDCIYVYDLEAN  266 (498)
Q Consensus       196 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~-----~~~s~~g~~l~~g-~~dg~i~vwd~~~~  266 (498)
                      . +..|...+++.-++..+..++.....  +.+..   ..++..|.+     +=+.|||+.+... -..+.+.+.|.++.
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~---~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm  225 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQK---IPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM  225 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCCccCccccCccc---cCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence            4 45666666665555444444432211  11110   012222322     3355677755433 23567888888887


Q ss_pred             eeeEEEeccCCCeeEEEEeCCCCCEEEEee----------------------------------------CCCeEEEEcC
Q 010883          267 KLSLRILAHTSDVNTVCFGDESGHLIYSGS----------------------------------------DDNLCKVWDR  306 (498)
Q Consensus       267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s----------------------------------------~dg~i~vwd~  306 (498)
                      +...++.--. ....+.++ +++.++++.+                                        .++.|.+.|.
T Consensus       226 eV~~qV~Vdg-npd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~  303 (635)
T PRK02888        226 EVAWQVMVDG-NLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG  303 (635)
T ss_pred             eEEEEEEeCC-CcccceEC-CCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence            7666654322 33455665 4566665554                                        1234566665


Q ss_pred             ccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883          307 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK  385 (498)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (498)
                      +.....+..+.....-......+.++|||+++++++ .+.++.|.|+.+......-..                      
T Consensus       304 ~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~----------------------  361 (635)
T PRK02888        304 RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI----------------------  361 (635)
T ss_pred             CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----------------------
Confidence            410000122222222334567899999999987665 488999999988542111000                      


Q ss_pred             CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                      .+.+..+.......  .     ....+|+++|+...+-.-|..|..||+..
T Consensus       362 ~~~~~vvaevevGl--G-----PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPELGL--G-----PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeeccCC--C-----cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            00011111111100  0     01225677888777778899999999876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.42  E-value=0.00031  Score=59.77  Aligned_cols=142  Identities=19%  Similarity=0.048  Sum_probs=94.7

Q ss_pred             CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883          188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       188 ~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      ..+++.|+..+.+.-.|..+|+.........                 .|.+-+.- -|.+++.|+..|.+++.+.++|.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-----------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs   84 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-----------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS   84 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCc-----------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence            3567778888899999999988765544332                 22222222 46789999999999999999998


Q ss_pred             eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcE
Q 010883          268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI  347 (498)
Q Consensus       268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i  347 (498)
                      ....+.. ...|.+-+-.++++.++..|+.|++.+..|.+    ....+...+...+...+-+..|-...|..+...|.+
T Consensus        85 ~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   85 QIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             heeeeee-hhhhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence            7766643 23444444446789999999999999999998    666666655433333344455533345555555555


Q ss_pred             EEEeC
Q 010883          348 KLWDI  352 (498)
Q Consensus       348 ~iwd~  352 (498)
                      .--..
T Consensus       160 lavt~  164 (354)
T KOG4649|consen  160 LAVTK  164 (354)
T ss_pred             EEEcc
Confidence            44443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=1.5e-05  Score=78.19  Aligned_cols=110  Identities=14%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             EEEEEcCCCCEEEEEE----CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          135 YVSQFSADGSLFVAGF----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      +-..|+|...++|+++    ..|.|.||- ++|++-. .....   ..+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-ccccc---eehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            3457899888888876    367888885 4454222 11111   2467899999999999998899999999877654


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA  265 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~  265 (498)
                      .....                .|+.+|..+.||++|..++++..-|.|.+|....
T Consensus        94 htv~~----------------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   94 HTVVE----------------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeecc----------------CCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            33322                4777999999999999999999999999998763

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.41  E-value=0.00089  Score=60.51  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeecCCCce----eEEEEEeCCCCCeEEEEEC--CC
Q 010883          135 YVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYASM--SP  198 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~s~--d~  198 (498)
                      --+..||||+.+++++          ..-.|.+||..+-.....+.....++.    ....++++.|++++++...  ..
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            3467899999888754          234699999999876666655544222    2234678999998887644  45


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEe----
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRIL----  273 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~~~~~----  273 (498)
                      .|.|.|+..++.......+.                  +..+--+.+ +-+.+.|.||.+.-..+. .|+...+..    
T Consensus       119 SVtVVDl~~~kvv~ei~~PG------------------C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~  179 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTPG------------------CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD  179 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGTS------------------EEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred             eEEEEECCCCceeeeecCCC------------------EEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence            79999999988766555442                  222222222 357888899999888887 455443221    


Q ss_pred             ccCCCe-eEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          274 AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       274 ~~~~~v-~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                      ....++ ..-++. ..+..++--+.+|.|+--|+.
T Consensus       180 ~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  180 PDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             TTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEET
T ss_pred             CCCcccccccceE-CCCCeEEEEecCCEEEEEecc
Confidence            111222 233443 344555667889999998886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=4.5e-05  Score=74.59  Aligned_cols=147  Identities=13%  Similarity=0.164  Sum_probs=105.4

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      .++++++  .+++++.|+-+|.|++.+....- ...+.                 |+..      ..+|.++++|+.||.
T Consensus        41 ~is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~-----------------~s~~------~~~Gey~asCS~DGk   94 (846)
T KOG2066|consen   41 AISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFD-----------------HSSS------ILEGEYVASCSDDGK   94 (846)
T ss_pred             HHHHHHh--hcceeeeccccceEEEEecCCcc-ccccc-----------------cccc------ccCCceEEEecCCCc
Confidence            4555655  46789999999999999876532 11111                 1111      458999999999999


Q ss_pred             EEEEECCCCeeeEEEeccCCCeeEEEEeCC----CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          258 IYVYDLEANKLSLRILAHTSDVNTVCFGDE----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      |.|-.+-+.+...++ ....++.+++++|.    ....+++|+.-| +.++..+-.+ ....+ .+..-.++|.++.|. 
T Consensus        95 v~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg-nk~~v-~l~~~eG~I~~i~W~-  169 (846)
T KOG2066|consen   95 VVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG-NKDSV-VLSEGEGPIHSIKWR-  169 (846)
T ss_pred             EEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc-Cccce-eeecCccceEEEEec-
Confidence            999999888876665 45678999999743    256788999988 8887765332 11222 455567899999995 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCC
Q 010883          334 DGRYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       334 ~~~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                       |++||=++.+| |++||....+.
T Consensus       170 -g~lIAWand~G-v~vyd~~~~~~  191 (846)
T KOG2066|consen  170 -GNLIAWANDDG-VKVYDTPTRQR  191 (846)
T ss_pred             -CcEEEEecCCC-cEEEeccccce
Confidence             56777777666 99999987543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.36  E-value=1.7e-05  Score=75.16  Aligned_cols=112  Identities=18%  Similarity=0.213  Sum_probs=79.8

Q ss_pred             EEEEEEcC-CCCEEEEE----eCCCe----EEEEECCCCeeeE---EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883          237 IFSLKFST-DGRELVAG----SSDDC----IYVYDLEANKLSL---RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW  304 (498)
Q Consensus       237 i~~~~~s~-~g~~l~~g----~~dg~----i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vw  304 (498)
                      ..++.|+. +...+.+.    +.+|.    -++|++..++...   +-....+.|.|++++ ++...|+.|+.||.|.+|
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~s-p~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARS-PSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecC-cccceEEEEecCCeEEEE
Confidence            45667775 33444443    22333    4567776654321   112677899999998 788899999999999999


Q ss_pred             cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      |..    .+  +..+....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       287 D~~----~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  287 DTT----RG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EcC----CC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            985    22  2233334456789999999999999999999999998753

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.33  E-value=0.00016  Score=69.14  Aligned_cols=183  Identities=25%  Similarity=0.296  Sum_probs=109.7

Q ss_pred             cEEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe--EEEEcCccc
Q 010883          236 GIFSLKFSTDGRELVAGS---SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL--CKVWDRRCL  309 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~---~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~--i~vwd~~~~  309 (498)
                      .+..-+|+|+++.++...   .. ..++++|+++++....+. ..+.-...+|+|....++++...||.  |.+.|+.  
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~--  270 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD--  270 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC--
Confidence            567778999998765542   22 469999999887655443 34444567898555555666677776  5555664  


Q ss_pred             cCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                         ++....+..-.+.-+.-.|+|||+.|+-.+. .|.  |.++|......                             
T Consensus       271 ---~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----------------------------  318 (425)
T COG0823         271 ---GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----------------------------  318 (425)
T ss_pred             ---CCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------------------------
Confidence               2223334433333346679999999886653 444  55555544211                             


Q ss_pred             CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-Ce--EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEE
Q 010883          387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SC--VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV  463 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~--i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  463 (498)
                          ...++....        ...|.+||||++|+..+.. |.  |.+.|+.++..+..+. +......-+|.++++.++
T Consensus       319 ----~riT~~~~~--------~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         319 ----TRLTFSGGG--------NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM  385 (425)
T ss_pred             ----eEeeccCCC--------CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence                111111111        1267899999999987753 44  7777777666444443 333444567888887665


Q ss_pred             EEe
Q 010883          464 SSS  466 (498)
Q Consensus       464 s~~  466 (498)
                      ..+
T Consensus       386 ~~s  388 (425)
T COG0823         386 FSS  388 (425)
T ss_pred             Eec
Confidence            544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=8.5e-05  Score=73.29  Aligned_cols=203  Identities=11%  Similarity=0.145  Sum_probs=126.1

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC-eeEEEEeCCCCCEEEEeeCCC-----eEEEEcCccccCCC-
Q 010883          241 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG-  313 (498)
Q Consensus       241 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~-  313 (498)
                      +|++.+..++.|+.+|.|.+++- +-+.+..+..+... |..+.. ....++|++.+.|+     .+++||+...+.+. 
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            46778888999999999988874 23444666666666 444433 24446777777664     58999997553222 


Q ss_pred             -cee--EEecc-----ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883          314 -KPA--GVLMG-----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK  385 (498)
Q Consensus       314 -~~~--~~~~~-----~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (498)
                       ..+  ..+..     ...++.+++++.+-+.+|+|-.+|.|..+.=.-...                            
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD----------------------------  159 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD----------------------------  159 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc----------------------------
Confidence             222  11222     245788999999999999999999998885322110                            


Q ss_pred             CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE-EEEeccCCCCeeeeEEcCCCCeEEE
Q 010883          386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVS  464 (498)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s  464 (498)
                          +..+.-..|.....+....+.    .+++.++-......|.+|.+....+ ...+..|..+++|.++++....++.
T Consensus       160 ----rgsr~~~~~~~~~pITgL~~~----~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc  231 (933)
T KOG2114|consen  160 ----RGSRQDYSHRGKEPITGLALR----SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC  231 (933)
T ss_pred             ----cccceeeeccCCCCceeeEEe----cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE
Confidence                111111122222233333332    2555533333445699999874442 4557788889999999987765665


Q ss_pred             EeCCCcEEEecCCCCCCC
Q 010883          465 SSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       465 ~~~Dg~i~iw~~~~~~~~  482 (498)
                      ++. ..|.+|+.++.+..
T Consensus       232 a~~-e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  232 AGS-EFLYFYDSDGRGPC  248 (933)
T ss_pred             ecC-ceEEEEcCCCccee
Confidence            553 46899998765543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=9e-05  Score=66.71  Aligned_cols=82  Identities=16%  Similarity=0.090  Sum_probs=65.2

Q ss_pred             CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVH  201 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i~  201 (498)
                      .+.+..|...|..++|||..+ ++..++.+.+|+|.|+.+.........   + ..+.+++|.-|.. +|..|...|.|.
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---Y-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---c-CCceeeeeccCCcceeEEeccCceEE
Confidence            346778899999999999987 788899999999999998754443332   2 4799999998765 555666799999


Q ss_pred             EEECCCCc
Q 010883          202 IVDVGSGT  209 (498)
Q Consensus       202 iwd~~~~~  209 (498)
                      |||+...+
T Consensus       262 vyD~R~~~  269 (463)
T KOG1645|consen  262 VYDMRQPE  269 (463)
T ss_pred             EEEccCCC
Confidence            99998654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.27  E-value=0.0022  Score=61.63  Aligned_cols=194  Identities=13%  Similarity=0.093  Sum_probs=104.3

Q ss_pred             EEEEEcCCCCEEEEEECC-----------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          135 YVSQFSADGSLFVAGFQA-----------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~d-----------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      +.++.+|.|.-+|....+           ..|.||+.. |..+.......   +.|.++.|+.+.. |++...||.++++
T Consensus        32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~---~~iv~~~wt~~e~-LvvV~~dG~v~vy  106 (410)
T PF04841_consen   32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS---GRIVGMGWTDDEE-LVVVQSDGTVRVY  106 (410)
T ss_pred             eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC---CCEEEEEECCCCe-EEEEEcCCEEEEE
Confidence            345677777777766444           159999986 44555543333   5899999988655 5566789999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEe---ccC---
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL---AHT---  276 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~---~~~---  276 (498)
                      |+....   .+.+.......       .-....+....+..+|  ++.-..++.+++.+-.... ....+.   ...   
T Consensus       107 ~~~G~~---~fsl~~~i~~~-------~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~  174 (410)
T PF04841_consen  107 DLFGEF---QFSLGEEIEEE-------KVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKF  174 (410)
T ss_pred             eCCCce---eechhhhcccc-------CcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccc
Confidence            987443   11111110000       0011123333444456  3333445555554322221 111111   100   


Q ss_pred             ---CCeeE-EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          277 ---SDVNT-VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       277 ---~~v~~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                         ..... ..+. .+....+....++.+.+.+-.    ....   + ...+++..|++||+++++|.-..+|.+.+...
T Consensus       175 ~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  175 HWWPSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             ccccccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence               01111 1232 334444444555566644432    1111   1 12468999999999999999999999988875


Q ss_pred             CC
Q 010883          353 RK  354 (498)
Q Consensus       353 ~~  354 (498)
                      .-
T Consensus       246 Df  247 (410)
T PF04841_consen  246 DF  247 (410)
T ss_pred             cc
Confidence            43

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.25  E-value=0.00095  Score=63.27  Aligned_cols=252  Identities=16%  Similarity=0.166  Sum_probs=130.7

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec-cccccc------------cccCc-ccccc---C----------C
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LANVTE------------IHDGL-DFSAA---D----------D  230 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~-~~~~~~------------~~~~~-~~~~~---~----------~  230 (498)
                      .|+.+.|+++..-|+++...|.|.||.....+... ......            ....+ +....   .          .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999999999999999999999876543221 000000            00000 00000   0          0


Q ss_pred             CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--c------cCCCeeEEEEe----CCCC---CEEEEe
Q 010883          231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--A------HTSDVNTVCFG----DESG---HLIYSG  295 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~----~~~~---~~l~s~  295 (498)
                      ....++|++++.|.-| ++++|..+|.+.|.|++....+..-.  .      ....|+++.|+    ..++   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            1236789999998555 89999999999999998887766532  1      23467888886    1222   478899


Q ss_pred             eCCCeEEEEcCccccCCCcee----EEeccccccEEEEE-EcCC-C-------------------CEEEEEeCCCcEEEE
Q 010883          296 SDDNLCKVWDRRCLNVKGKPA----GVLMGHLEGITFID-SRGD-G-------------------RYLISNGKDQAIKLW  350 (498)
Q Consensus       296 s~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~v~~l~-~~~~-~-------------------~~l~s~~~dg~i~iw  350 (498)
                      ...|.+.+|.+.... .+...    .....+.++|..+. ++.+ |                   +.++....+..++++
T Consensus       162 Tn~G~v~~fkIlp~~-~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  162 TNSGNVLTFKILPSS-NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             ETTSEEEEEEEEE-G-GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             eCCCCEEEEEEecCC-CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            999999999875211 11111    11123445555544 2211 0                   123334445668887


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc-CCCCcEEEEEecCCeE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY-STGQKYIYTGSHDSCV  429 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i  429 (498)
                      ...+.+                                 ...+.+ .......  .+.+-+.. ...+..|++-..+|.|
T Consensus       241 ~~~~~k---------------------------------~~~K~~-~~~~~~~--~~~vv~~~~~~~~~~Lv~l~~~G~i  284 (395)
T PF08596_consen  241 KPPKSK---------------------------------GAHKSF-DDPFLCS--SASVVPTISRNGGYCLVCLFNNGSI  284 (395)
T ss_dssp             -TT------------------------------------EEEEE--SS-EEEE--EEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred             eCCCCc---------------------------------ccceee-ccccccc--eEEEEeecccCCceEEEEEECCCcE
Confidence            776522                                 111222 1111111  11110000 1246678888899999


Q ss_pred             EEEECCCCcEEEEeccCC----CCeeeeEEcCCCCeEEEEeC
Q 010883          430 YVYDLVSGEQVAALKYHT----SPVRDCSWHPSQPMLVSSSW  467 (498)
Q Consensus       430 ~iwd~~~~~~~~~~~~h~----~~v~~l~~sp~~~~l~s~~~  467 (498)
                      ++|.+..-+.+..++...    ..+...+++++|..++-.+.
T Consensus       285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             EEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             EEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence            999999999888876432    34567788999997766654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.24  E-value=4.5e-07  Score=85.81  Aligned_cols=205  Identities=14%  Similarity=0.180  Sum_probs=130.1

Q ss_pred             cEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeee--EEEeccCCCeeEEEEeCCCCCEEEEee----CCCeEEEEcCc
Q 010883          236 GIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGS----DDNLCKVWDRR  307 (498)
Q Consensus       236 ~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~s----~dg~i~vwd~~  307 (498)
                      .+.|+++.-+  ...+++|..+|.|-+-.+....-.  ....++..++++++|++-+.+.|++|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            4667776653  347889999999999887654322  334578889999999977778888874    35679999997


Q ss_pred             cccCCCceeEEecc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          308 CLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       308 ~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                      ..-...+....+.+ ......+++|-.+.+++++|.....+.++|++......                           
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---------------------------  190 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---------------------------  190 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------------------------
Confidence            44211111112222 34556688898889999999999999999998421110                           


Q ss_pred             CCCceEEEEccCceeEEEEEEEeccccCC-CCcEEEEEecCCeEEEEEC-CCC-cEEEEeccCC----CCeeeeEEcCCC
Q 010883          387 PCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDL-VSG-EQVAALKYHT----SPVRDCSWHPSQ  459 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~-~~~-~~~~~~~~h~----~~v~~l~~sp~~  459 (498)
                         ..+.+   .        .+-....+| .+.|+++-. ||.|.+||. ..- .++..+....    ..+..++|+|..
T Consensus       191 ---~svnT---k--------~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  191 ---SSVNT---K--------YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             ---hhhhh---h--------hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence               00000   0        000112222 456776655 999999994 222 2222222112    248999999976


Q ss_pred             C-eEEEEeC-CCcEEEecCCCCCCC
Q 010883          460 P-MLVSSSW-DGDVVRWEFPGNGEA  482 (498)
Q Consensus       460 ~-~l~s~~~-Dg~i~iw~~~~~~~~  482 (498)
                      + .+++... .++|+.+++......
T Consensus       256 tglla~l~RdS~tIrlydi~~v~t~  280 (783)
T KOG1008|consen  256 TGLLAVLSRDSITIRLYDICVVGTE  280 (783)
T ss_pred             cchhhhhccCcceEEEecccccCCc
Confidence            6 5666654 478999998755443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.22  E-value=0.00037  Score=65.95  Aligned_cols=207  Identities=12%  Similarity=0.113  Sum_probs=108.3

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCC----------------ceeEEEEEeCCCCCeEEEE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL----------------RWTVTDTSLSPDQRHLVYA  194 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~----------------~~~v~~~~~sp~~~~l~~~  194 (498)
                      ...+....|||||+.+|... ++.|.+++..++...+.  ...+.                -..-..+-||||+++||..
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            56788999999999999885 67899999888733322  22220                0123567899999999986


Q ss_pred             ECCC-eE---EEEECCCCce----eccccccc---cc-----------cCc--ccccc-CCCCceecEEEEEEcCCCCEE
Q 010883          195 SMSP-IV---HIVDVGSGTM----ESLANVTE---IH-----------DGL--DFSAA-DDGGYSFGIFSLKFSTDGREL  249 (498)
Q Consensus       195 s~d~-~i---~iwd~~~~~~----~~~~~~~~---~~-----------~~~--~~~~~-~~~~h~~~i~~~~~s~~g~~l  249 (498)
                      ..|. .|   .+-+......    ......+.   ..           .+.  ..... ....-..-+..+.|.++++.|
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence            5432 22   2222211110    00000000   00           000  00000 000123468899999999844


Q ss_pred             EEEeC--C---CeEEEEECCCCeeeEEEec-cCCC---eeEEEEe-CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe
Q 010883          250 VAGSS--D---DCIYVYDLEANKLSLRILA-HTSD---VNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL  319 (498)
Q Consensus       250 ~~g~~--d---g~i~vwd~~~~~~~~~~~~-~~~~---v~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  319 (498)
                      +..-.  +   ..+.++|..++.....+.. ....   -....|. +.+..+|.....||.-+||-+..   .+.....+
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~---~~~~~~~l  275 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL---DGGKPRQL  275 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET---TSSEEEES
T ss_pred             EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc---cccceecc
Confidence            44332  2   2477788877765433332 2222   2355554 56677777777888666655441   33444566


Q ss_pred             ccccccEEE-EEEcCCCCEEE-EEeC
Q 010883          320 MGHLEGITF-IDSRGDGRYLI-SNGK  343 (498)
Q Consensus       320 ~~~~~~v~~-l~~~~~~~~l~-s~~~  343 (498)
                      ....-.|+. +.++++++.|+ ++..
T Consensus       276 T~G~~~V~~i~~~d~~~~~iyf~a~~  301 (353)
T PF00930_consen  276 TSGDWEVTSILGWDEDNNRIYFTANG  301 (353)
T ss_dssp             S-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred             ccCceeecccceEcCCCCEEEEEecC
Confidence            655556744 66788877655 4443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.22  E-value=4e-07  Score=86.15  Aligned_cols=205  Identities=17%  Similarity=0.173  Sum_probs=131.3

Q ss_pred             ceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEE----CCCeEEEEEC
Q 010883          133 RAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYAS----MSPIVHIVDV  205 (498)
Q Consensus       133 ~v~~~~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s----~d~~i~iwd~  205 (498)
                      .+.|+++.-+  ..+++.|..+|.|.+-.+...... ......++....++++|++ |.+.||+|-    .|..+.|||+
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4566766554  358889999999999887654222 1123345556899999999 566777663    2557999999


Q ss_pred             CCCce--eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          206 GSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       206 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      .++-.  .....         |..    +.-....+++|..+.+++.+|.....+.++|++.... ....-.+..+..+.
T Consensus       137 ~s~ltvPke~~~---------fs~----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~t  202 (783)
T KOG1008|consen  137 NSLLTVPKESPL---------FSS----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGIT  202 (783)
T ss_pred             ccccCCCccccc---------ccc----ccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccce
Confidence            87632  11111         111    0112455889998999999999999999999974322 11222344667778


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcC-ccccCCCceeEEeccc----cccEEEEEEcCCCC-EEEEEeC-CCcEEEEeCCCCC
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDR-RCLNVKGKPAGVLMGH----LEGITFIDSRGDGR-YLISNGK-DQAIKLWDIRKMS  356 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~-~l~s~~~-dg~i~iwd~~~~~  356 (498)
                      ..|-.++++++-. ||.|.+||. +.   ...++..+...    ...+..++|.|... .+++... .++|+++|+....
T Consensus       203 Vdp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~  278 (783)
T KOG1008|consen  203 VDPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG  278 (783)
T ss_pred             ecCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence            8755788886655 999999993 31   12222222222    22488999998532 3445544 4789999988643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.19  E-value=0.00072  Score=64.98  Aligned_cols=183  Identities=16%  Similarity=0.082  Sum_probs=95.9

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      ........+.++|+|++++++ .||...||....... ..       .+.-..++|.+.++ +|+-...+.|.|+.--..
T Consensus        30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-k~-------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-KA-------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-EE-------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred             CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-cc-------cCceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence            334456789999999999985 577888888544311 11       12455688999555 566666788999643222


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  288 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  288 (498)
                      ........+.                 .+..+-.   |..|...+.+ .|.+||+.+++.+.++...  +|..+.|+ ++
T Consensus       100 ~~~k~i~~~~-----------------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~  155 (443)
T PF04053_consen  100 EVVKSIKLPF-----------------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS-DD  155 (443)
T ss_dssp             -TT-----SS------------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE--TT
T ss_pred             ccceEEcCCc-----------------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE-CC
Confidence            2211122111                 1222322   7777766554 8999999999999888533  38999998 78


Q ss_pred             CCEEEEeeCCCeEEEEcCccc-------cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010883          289 GHLIYSGSDDNLCKVWDRRCL-------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL  349 (498)
Q Consensus       289 ~~~l~s~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~i  349 (498)
                      +++++..+.+ .+.+++....       ..-......+......|.+..|..+  .++-.... .|+.
T Consensus       156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence            8888888755 6777765311       0000133333333567888888765  44433333 5555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.18  E-value=0.0052  Score=60.89  Aligned_cols=259  Identities=14%  Similarity=0.105  Sum_probs=136.5

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEE---------CCCeEEEEECCCCceec
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYAS---------MSPIVHIVDVGSGTMES  212 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s---------~d~~i~iwd~~~~~~~~  212 (498)
                      ..++.++.++.|.-+|..+|+.+.+......... -..+.-+|  .+..++.++         .++.+..+|..+|+...
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~-~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPP-GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCc-ceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            5777788899999999999977766443221000 00111122  124444443         36789999999998776


Q ss_pred             cccccccccCccccccCCC----Cce-ecE-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCee
Q 010883          213 LANVTEIHDGLDFSAADDG----GYS-FGI-FSLKFSTDGRELVAGSSDD------------------CIYVYDLEANKL  268 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~----~h~-~~i-~~~~~s~~g~~l~~g~~dg------------------~i~vwd~~~~~~  268 (498)
                      ......... ..+......    .+. ..+ ...++.+.+..++.++.++                  .|.-+|..+++.
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         190 RFYTTEPDP-NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             EeeccCCCc-CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            554421110 000000000    000 011 1245555566777777665                  799999999998


Q ss_pred             eEEEeccCCCe------eEEEEe---CCCCC---EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC
Q 010883          269 SLRILAHTSDV------NTVCFG---DESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR  336 (498)
Q Consensus       269 ~~~~~~~~~~v------~~~~~~---~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  336 (498)
                      .-.+..-....      ....+.   +.++.   .++.++.+|.+...|.+    +++.+......   ...++.+|  .
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~----tG~~~W~~~~~---~~~~~~~~--~  339 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT----TGKLISARPEV---EQPMAYDP--G  339 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC----CCcEeeEeEee---ccccccCC--c
Confidence            77654211111      111111   11232   67888899999999998    66666544311   11223333  2


Q ss_pred             EEEEE------------------eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883          337 YLISN------------------GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH  398 (498)
Q Consensus       337 ~l~s~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (498)
                      .++.+                  ..+|.+.-.|+.+.+..-........                       ....+...
T Consensus       340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~-----------------------~~~~~g~~  396 (488)
T cd00216         340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR-----------------------DSWNIGFP  396 (488)
T ss_pred             eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc-----------------------cccccCCc
Confidence            23222                  13456666676664322211100000                       00000000


Q ss_pred             ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc
Q 010883          399 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY  445 (498)
Q Consensus       399 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  445 (498)
                      .         +.......+.+|++++.||.|+.+|..+|+.+.+++.
T Consensus       397 ~---------~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         397 H---------WGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             c---------cCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            0         0000001467899999999999999999999988764

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.15  E-value=0.00053  Score=65.65  Aligned_cols=154  Identities=21%  Similarity=0.254  Sum_probs=95.8

Q ss_pred             eeEEEEEeCCCCCeEEEEEC---C-CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          177 WTVTDTSLSPDQRHLVYASM---S-PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~---d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      ..+..-+|+|+++.++..+.   . ..+.++++.+++.........                 .-..-+|+|||+.|+..
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g-----------------~~~~P~fspDG~~l~f~  255 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG-----------------NNGAPAFSPDGSKLAFS  255 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC-----------------ccCCccCCCCCCEEEEE
Confidence            36777889999988776532   3 469999999887655554221                 23346899999988766


Q ss_pred             e-CCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCe--EEEEcCccccCCCceeEEeccccccE
Q 010883          253 S-SDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGI  326 (498)
Q Consensus       253 ~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~v  326 (498)
                      . .||  .|+++|+..+.. .++....+.-..-.|+ |+|+.++.. +..|.  |.++++.     +.....+......-
T Consensus       256 ~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~-----g~~~~riT~~~~~~  328 (425)
T COG0823         256 SSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLE-----GSQVTRLTFSGGGN  328 (425)
T ss_pred             ECCCCCccEEEEcCCCCcc-eecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCC-----CCceeEeeccCCCC
Confidence            4 344  477888887774 3354333333466787 566655544 45554  5555553     33333443333333


Q ss_pred             EEEEEcCCCCEEEEEeCC-Cc--EEEEeCCC
Q 010883          327 TFIDSRGDGRYLISNGKD-QA--IKLWDIRK  354 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~d-g~--i~iwd~~~  354 (498)
                      ..-.|+|||++|+..+.. |.  |.+.|+.+
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            377899999999877643 44  44555443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.14  E-value=0.0097  Score=57.90  Aligned_cols=202  Identities=19%  Similarity=0.194  Sum_probs=109.5

Q ss_pred             ceEEEEEcCCCCEEEEE-ECCC----eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC---------
Q 010883          133 RAYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---------  198 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~-~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~---------  198 (498)
                      .+...++||||++||.+ +..|    .|+++|+.+|+.+...+...    ....+.|.++++.|+....+.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            34467899999999865 3333    59999999996655432221    122399999999887766433         


Q ss_pred             --eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC----ee
Q 010883          199 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---D-DCIYVYDLEAN----KL  268 (498)
Q Consensus       199 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---d-g~i~vwd~~~~----~~  268 (498)
                        .|..|.+.+.......-.....            .......+..++|+++|+....   + ..+++.++..+    ..
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~  268 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPD------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK  268 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TT------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred             CcEEEEEECCCChHhCeeEEeecC------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence              4788888776543111111111            1112667889999998876543   2 45888898875    23


Q ss_pred             eEEEeccCCCee-EEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-C
Q 010883          269 SLRILAHTSDVN-TVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-K  343 (498)
Q Consensus       269 ~~~~~~~~~~v~-~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~  343 (498)
                      ...+......+. .+...  ++.+++...   ..+.|...++..... ......+..+...+.-..+...+.+|+... .
T Consensus       269 ~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~  345 (414)
T PF02897_consen  269 PKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE  345 (414)
T ss_dssp             EEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEE
Confidence            344444444443 34432  343444332   235666667652211 112335555555433333333444555443 3


Q ss_pred             CC--cEEEEeCC
Q 010883          344 DQ--AIKLWDIR  353 (498)
Q Consensus       344 dg--~i~iwd~~  353 (498)
                      ++  .|+++++.
T Consensus       346 ~~~~~l~v~~~~  357 (414)
T PF02897_consen  346 NGSSRLRVYDLD  357 (414)
T ss_dssp             TTEEEEEEEETT
T ss_pred             CCccEEEEEECC
Confidence            43  48888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.11  E-value=0.0018  Score=61.37  Aligned_cols=212  Identities=15%  Similarity=0.156  Sum_probs=120.1

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE----------------------------------------EEEeec
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------------------------------------QKDILA  172 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~----------------------------------------~~~~~~  172 (498)
                      .|+.+.|+++..-||+|...|.|.||....++..                                        ......
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999999999999999999999876432111                                        111222


Q ss_pred             CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-----CC-
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG-  246 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~g-  246 (498)
                      +...++|++++.| |=-++|.|..+|.+.|.|++....+....+.+..        ........|+++.|.-     |+ 
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~--------~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF--------LSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----------T-SS----EEEEEEEEEE-TTSSS
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc--------cccccccCeeEEEEEEEecCCCcc
Confidence            2335689999986 6668999999999999999888776654444300        0011233577777763     33 


Q ss_pred             --CEEEEEeCCCeEEEEECC--C-Ceee----EEEeccCCCeeEEEEe-CCCC-------------------CEEEEeeC
Q 010883          247 --RELVAGSSDDCIYVYDLE--A-NKLS----LRILAHTSDVNTVCFG-DESG-------------------HLIYSGSD  297 (498)
Q Consensus       247 --~~l~~g~~dg~i~vwd~~--~-~~~~----~~~~~~~~~v~~~~~~-~~~~-------------------~~l~s~s~  297 (498)
                        -.+++|+..|.+.+|.+-  . +...    .....+.+.|..+... ...+                   +-++....
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              378999999999999774  1 2111    1122456666666532 1111                   12334445


Q ss_pred             CCeEEEEcCccccCCCceeEEeccccccEEEEEE-----cCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883          298 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS-----RGDGRYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       298 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                      +..++++...    ..+..............+.+     ...+..|++-..+|.|++|.+...+.
T Consensus       234 e~~irv~~~~----~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  234 ESDIRVFKPP----KSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             SSEEEEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             ccceEEEeCC----CCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            6789999886    44444433322122233334     23566788889999999999987543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.06  E-value=0.014  Score=58.20  Aligned_cols=195  Identities=16%  Similarity=0.189  Sum_probs=109.0

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCc-eeEEE-------EEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTD-------TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~~-------~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      +..|++++.++.|.-.|..+|+.+-+........ ..+.+       +++  .+..++.++.++.+.-.|..+|+.....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4566777778889999999987766543221110 01101       111  2345677888999999999999987665


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCC-----------
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTS-----------  277 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~-----------  277 (498)
                      .........            .+.+.-..-++ .++++..      +|.|.-+|.++++.+-++..-..           
T Consensus       147 ~~~~~~~~~------------~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~  213 (527)
T TIGR03075       147 KNGDYKAGY------------TITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKP  213 (527)
T ss_pred             ccccccccc------------cccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccc
Confidence            442211000            11110000144 4555432      68899999999987755432110           


Q ss_pred             --------------------Cee-EEEEeCCCCCEEEEeeCC-----C-----------eEEEEcCccccCCCceeEEec
Q 010883          278 --------------------DVN-TVCFGDESGHLIYSGSDD-----N-----------LCKVWDRRCLNVKGKPAGVLM  320 (498)
Q Consensus       278 --------------------~v~-~~~~~~~~~~~l~s~s~d-----g-----------~i~vwd~~~~~~~~~~~~~~~  320 (498)
                                          .+. .+++ ++...+++.+...     +           .|.-.|++    +++..-.++
T Consensus       214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~-D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~Q  288 (527)
T TIGR03075       214 VGGEPGAKTWPGDAWKTGGGATWGTGSY-DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHYQ  288 (527)
T ss_pred             cccccccCCCCCCccccCCCCccCceeE-cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEeee
Confidence                                111 2344 3445566665532     2           44455555    555555544


Q ss_pred             cccccE---------EEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCC
Q 010883          321 GHLEGI---------TFIDSRGDGR---YLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       321 ~~~~~v---------~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~~  357 (498)
                      .....+         .-+....+|+   .++.+..+|.+.+.|-++.+.
T Consensus       289 ~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       289 TTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             CCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            322211         1222334665   778999999999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.06  E-value=0.002  Score=61.93  Aligned_cols=141  Identities=18%  Similarity=0.132  Sum_probs=80.9

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      .+..+.++|+|++++++ .+|...|+.....+..                     ..+.-..+.|.+.++ +|+-..++.
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k---------------------~~G~g~~~vw~~~n~-yAv~~~~~~   90 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK---------------------AFGSGLSFVWSSRNR-YAVLESSST   90 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE---------------------EEEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc---------------------ccCceeEEEEecCcc-EEEEECCCe
Confidence            57889999999999984 5777888874332221                     112456788998665 777777888


Q ss_pred             EEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883          258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                      |.++.--..+....+.. ...+..|-.    |.+|+..+.+ .|.+||+.    .++.+..+...  +|..+.|++++.+
T Consensus        91 I~I~kn~~~~~~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~----~~~~i~~i~v~--~vk~V~Ws~~g~~  158 (443)
T PF04053_consen   91 IKIYKNFKNEVVKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWE----TGKLIRRIDVS--AVKYVIWSDDGEL  158 (443)
T ss_dssp             EEEEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TT----T--EEEEESS---E-EEEEE-TTSSE
T ss_pred             EEEEEcCccccceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhh----HcceeeEEecC--CCcEEEEECCCCE
Confidence            99963323332223321 122333322    6667666554 89999998    77888887643  4899999999999


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 010883          338 LISNGKDQAIKLWDIRK  354 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~  354 (498)
                      ++..+.+ .+.|++...
T Consensus       159 val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  159 VALVTKD-SIYILKYNL  174 (443)
T ss_dssp             EEEE-S--SEEEEEE-H
T ss_pred             EEEEeCC-eEEEEEecc
Confidence            9988765 678877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.03  E-value=0.00014  Score=70.34  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883          176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  255 (498)
Q Consensus       176 ~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d  255 (498)
                      ...|.--+++..+++++.|+..|.+.+|+-..+.......-               +-.+.+.....+++..++|+|+..
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---------------~~~~~~~~~~vs~~e~lvAagt~~   97 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---------------GATGITCVRSVSSVEYLVAAGTAS   97 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc---------------CccceEEEEEecchhHhhhhhcCC
Confidence            33566667788999999999999999999888765443321               122256667788888889999999


Q ss_pred             CeEEEEECCCCeeeEE-E-----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          256 DCIYVYDLEANKLSLR-I-----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      |.|.++-+....+... +     ..|...|++++|+ +++..+++|...|.|.+-.+.....-......+......|..+
T Consensus        98 g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl  176 (726)
T KOG3621|consen   98 GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL  176 (726)
T ss_pred             ceEEeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence            9999998876432211 1     1478899999998 8999999999999999888763111122233344455667777


Q ss_pred             EEcCCCCEEEEE
Q 010883          330 DSRGDGRYLISN  341 (498)
Q Consensus       330 ~~~~~~~~l~s~  341 (498)
                      ... ++.+|++.
T Consensus       177 D~~-q~~LLVSt  187 (726)
T KOG3621|consen  177 DYL-QSYLLVST  187 (726)
T ss_pred             ecc-cceehHhh
Confidence            765 33344433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.02  E-value=0.0068  Score=53.33  Aligned_cols=203  Identities=13%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEecc-CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883          236 GIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG  313 (498)
Q Consensus       236 ~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  313 (498)
                      .+..++|+|+.. ++++....+.|..++. +++.+.++.-. .+..-.|++. .++.++++.-.++.+.++++.......
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence            699999999755 5666677888988897 47777777533 3678999996 666666666568999999884221111


Q ss_pred             --ceeEEe-----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          314 --KPAGVL-----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       314 --~~~~~~-----~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                        .....+     ..+...+-.++|+|.++.|+.+-...-..+|.++.......                          
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~--------------------------  154 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD--------------------------  154 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS---------------------------
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc--------------------------
Confidence              111111     12445689999999888888887776677777654210000                          


Q ss_pred             CCCceEEEEcc----CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC---------CCeeee
Q 010883          387 PCDQSVATYKG----HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRDC  453 (498)
Q Consensus       387 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l  453 (498)
                         -.+.....    ...........+.+.   .+.+++....+..|..+| .+|+.+..+.-..         ...-.+
T Consensus       155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~---t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI  227 (248)
T PF06977_consen  155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPR---TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI  227 (248)
T ss_dssp             ----EEEE-HHHH-HT--SS---EEEEETT---TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred             ---eeeccccccccccceeccccceEEcCC---CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence               00000000    001112233444443   577888888889999999 6787766554211         246689


Q ss_pred             EEcCCCCeEEEEeCCCcEEEe
Q 010883          454 SWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       454 ~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                      +|.++|++.+++ .-+..+++
T Consensus       228 a~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  228 AFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EE-TT--EEEEE-TTTEEEEE
T ss_pred             EECCCCCEEEEc-CCceEEEe
Confidence            999999755554 55555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.99  E-value=0.0034  Score=57.19  Aligned_cols=148  Identities=16%  Similarity=0.094  Sum_probs=90.7

Q ss_pred             CCCCeEEEEECCCeEEEEECC-CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 010883          186 PDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE  264 (498)
Q Consensus       186 p~~~~l~~~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~  264 (498)
                      ..++.|+.|..+| +.++++. .........                  ...|..+...++-+.|++-+ |+.++++++.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~------------------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~   64 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK------------------LSSITQLSVLPELNLLLVLS-DGQLYVYDLD   64 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee------------------cceEEEEEEecccCEEEEEc-CCccEEEEch
Confidence            3578899999888 8899882 222211111                  12588999999877766664 5999999987


Q ss_pred             CCeeeEE--------------EeccCCCeeEEE-EeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEeccccccEEE
Q 010883          265 ANKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITF  328 (498)
Q Consensus       265 ~~~~~~~--------------~~~~~~~v~~~~-~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~  328 (498)
                      .-.....              .......+...+ -....+...++......|.+|......... .....+. -.+.+..
T Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~  143 (275)
T PF00780_consen   65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSS  143 (275)
T ss_pred             hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEE
Confidence            6544331              112233445544 112334444445555699998886432222 3445544 3477888


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883          329 IDSRGDGRYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                      ++|.  ++.|+.|..+ ...+.|+.+...
T Consensus       144 i~~~--~~~i~v~~~~-~f~~idl~~~~~  169 (275)
T PF00780_consen  144 IAFL--GNKICVGTSK-GFYLIDLNTGSP  169 (275)
T ss_pred             EEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence            9998  4567777654 478888886543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=0.021  Score=54.61  Aligned_cols=202  Identities=14%  Similarity=0.095  Sum_probs=128.9

Q ss_pred             cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC---CCeEEEEcCccccC
Q 010883          236 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNV  311 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~  311 (498)
                      ....++.++.+..+. ....++.|.+.|..+.+.......-. ....+++. +++..++.+..   ++++.+.|..    
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~----  148 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAA----  148 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC-CCCCEEEEEecccCCceEEEEeCC----
Confidence            355778888887444 44456889999988877766554332 56788897 56655555554   6888888876    


Q ss_pred             CCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883          312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ  390 (498)
Q Consensus       312 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (498)
                      ..+.......-..+ ..++++|+|..++... .++.|.+.|.......                                
T Consensus       149 t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~--------------------------------  195 (381)
T COG3391         149 TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV--------------------------------  195 (381)
T ss_pred             CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee--------------------------------
Confidence            55555553332234 8899999999665554 7889999996653211                                


Q ss_pred             eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCC-CeeeeEEcCCCCeEEEEe
Q 010883          391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPMLVSSS  466 (498)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~s~~  466 (498)
                         . .............+...++|+|.++++....   +.+...|..++.....-..-.. ....+..+|+|..+.+..
T Consensus       196 ---~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~  271 (381)
T COG3391         196 ---R-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN  271 (381)
T ss_pred             ---c-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence               0 0000000111111223567788877776554   5899999988887665221112 466789999999887774


Q ss_pred             C-CCcEEEecCCCCC
Q 010883          467 W-DGDVVRWEFPGNG  480 (498)
Q Consensus       467 ~-Dg~i~iw~~~~~~  480 (498)
                      . .+.+.+-|.....
T Consensus       272 ~~~~~V~vid~~~~~  286 (381)
T COG3391         272 SQGGTVSVIDGATDR  286 (381)
T ss_pred             cCCCeEEEEeCCCCc
Confidence            3 4777777766543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=0.00024  Score=70.13  Aligned_cols=110  Identities=15%  Similarity=0.199  Sum_probs=87.3

Q ss_pred             EEEEEeCCCCCeEEEEEC----CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          179 VTDTSLSPDQRHLVYASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       179 v~~~~~sp~~~~l~~~s~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      -+-..|+|...++++++.    .|.|.||- ++|+......                 ....+++++|+|..-.|+.|-.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~hatSLCWHpe~~vLa~gwe   79 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPVHATSLCWHPEEFVLAQGWE   79 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cceehhhhccChHHHHHhhccc
Confidence            344679999999988764    46787774 4444322111                 2225788999999888999999


Q ss_pred             CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          255 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       255 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                      -|.+.+|...+.+.-.....|+.+|..+.|+ ++|..++++..-|.|.+|...
T Consensus        80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence            9999999998887766677899999999998 889999999999999999875

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.89  E-value=0.0069  Score=56.59  Aligned_cols=216  Identities=17%  Similarity=0.211  Sum_probs=120.0

Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC----CCEEEEEeC---------C-CeEEEEECC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGSS---------D-DCIYVYDLE  264 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----g~~l~~g~~---------d-g~i~vwd~~  264 (498)
                      .|++.|..+.+......+....            +-..+..+.+..+    ..+|++|+.         . |.|.++++.
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E------------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~   70 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNE------------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEIS   70 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTE------------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEEC
T ss_pred             EEEEEeCCCCeEEEEEECCCCc------------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEE
Confidence            5788887777655444443322            1123444445443    467887753         2 889999998


Q ss_pred             CC-----eeeEE-EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCCCC
Q 010883          265 AN-----KLSLR-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGR  336 (498)
Q Consensus       265 ~~-----~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~  336 (498)
                      ..     +.... -....++|++++-.  ++. |+++. .+.|.+|++.    ....+....  .....+.++...  ++
T Consensus        71 ~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~----~~~~l~~~~~~~~~~~i~sl~~~--~~  140 (321)
T PF03178_consen   71 ESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLD----NSKTLLKKAFYDSPFYITSLSVF--KN  140 (321)
T ss_dssp             SS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEE----TTSSEEEEEEE-BSSSEEEEEEE--TT
T ss_pred             cccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEcc----CcccchhhheecceEEEEEEecc--cc
Confidence            84     22211 12557899999875  344 44443 4799999997    333122222  122356666665  55


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC
Q 010883          337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG  416 (498)
Q Consensus       337 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  416 (498)
                      +|+.|.....+.++..+..                                 ...+..+........+..+.+-.    +
T Consensus       141 ~I~vgD~~~sv~~~~~~~~---------------------------------~~~l~~va~d~~~~~v~~~~~l~----d  183 (321)
T PF03178_consen  141 YILVGDAMKSVSLLRYDEE---------------------------------NNKLILVARDYQPRWVTAAEFLV----D  183 (321)
T ss_dssp             EEEEEESSSSEEEEEEETT---------------------------------TE-EEEEEEESS-BEEEEEEEE-----S
T ss_pred             EEEEEEcccCEEEEEEEcc---------------------------------CCEEEEEEecCCCccEEEEEEec----C
Confidence            8999998888888755431                                 12222232222223333333332    4


Q ss_pred             CcEEEEEecCCeEEEEECCC-------Cc--E--EEEeccCCCCeeee---EEcCC--C------CeEEEEeCCCcEEEe
Q 010883          417 QKYIYTGSHDSCVYVYDLVS-------GE--Q--VAALKYHTSPVRDC---SWHPS--Q------PMLVSSSWDGDVVRW  474 (498)
Q Consensus       417 ~~~l~~g~~dg~i~iwd~~~-------~~--~--~~~~~~h~~~v~~l---~~sp~--~------~~l~s~~~Dg~i~iw  474 (498)
                      ++.++++..+|.+.++....       +.  .  +..+. ....|+++   ++.|.  +      +.++-++.+|.|...
T Consensus       184 ~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  184 EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            46899999999999998763       22  2  23332 34567777   55552  2      248888899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.89  E-value=0.014  Score=54.53  Aligned_cols=178  Identities=15%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             CeEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCCC----CCeEEEEEC----------CCeEEEEECCCC-----ceec
Q 010883          153 SQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPD----QRHLVYASM----------SPIVHIVDVGSG-----TMES  212 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~----~~~l~~~s~----------d~~i~iwd~~~~-----~~~~  212 (498)
                      +.|++.|..+.+.+......... -..+..+.+..+    ..+|++|..          .|.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35788888777666544333222 112333444443    467777653          288999999884     2211


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEe-ccCCCeeEEEEeCCCCC
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL-AHTSDVNTVCFGDESGH  290 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~  290 (498)
                      ....               ...++|++++-- ++. |+++. ++.|++|++...+ ....-. .....+.++...   ++
T Consensus        82 i~~~---------------~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~  140 (321)
T PF03178_consen   82 IHST---------------EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KN  140 (321)
T ss_dssp             EEEE---------------EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TT
T ss_pred             EEEE---------------eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---cc
Confidence            1111               123478888876 444 55554 4789999998887 433322 233466777665   56


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      +++.|.....+.++..+.   ....+..+.  .....++++.+-++++.++.+..+|.+.++....
T Consensus       141 ~I~vgD~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  141 YILVGDAMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEEESSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEEcccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            999999888888875541   122222222  2345588888886667999999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.82  E-value=0.0026  Score=63.74  Aligned_cols=195  Identities=12%  Similarity=0.089  Sum_probs=105.8

Q ss_pred             CceEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-CeEEE
Q 010883          132 SRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHI  202 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~------~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~~i~i  202 (498)
                      ..+...++||||+.+|..-      .|+  .|.+++....  .... . .+.  ..+.-.|+|||+.|++.... ..+++
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~l-t-~g~--~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQV-L-EGH--SLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceee-e-cCC--CCCCceECCCCCceEEEecCcceEEE
Confidence            4678999999999888665      243  4555554322  2222 1 222  37788999999988887643 22333


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCeee----EEEec-
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV---YDLEANKLS----LRILA-  274 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~v---wd~~~~~~~----~~~~~-  274 (498)
                      .+...............    ....    .....|..+.|+|||..++... +|.|++   -....+...    ..+.. 
T Consensus       424 ~~~~~~gql~~~~vd~g----e~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        424 IRDPATGQLARTPVDAS----AVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             eccCCCceEEEEeccCc----hhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence            33211111111110000    0000    1123699999999999888876 578877   444445411    11222 


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--ccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIK  348 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~dg~i~  348 (498)
                      -...+.++.|. .++.+ +++..++...+|.+...   +.....+..  ...++..++-+++  .++....++.+.
T Consensus       495 l~~~~~~l~W~-~~~~L-~V~~~~~~~~v~~v~vD---G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        495 LGDTAVSLDWR-TGDSL-VVGRSDPEHPVWYVNLD---GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cCCccccceEe-cCCEE-EEEecCCCCceEEEecC---CccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            22346889997 55654 45565665556665421   222111122  3567777877763  455555666433

>smart00320 WD40 WD40 repeats

Probab=97.77  E-value=8.3e-05  Score=43.98  Aligned_cols=39  Identities=38%  Similarity=0.655  Sum_probs=34.5

Q ss_pred             CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       437 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      ++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.76  E-value=0.0034  Score=61.61  Aligned_cols=189  Identities=13%  Similarity=0.050  Sum_probs=116.0

Q ss_pred             EEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC----eEEEEECCCCcee
Q 010883          137 SQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTME  211 (498)
Q Consensus       137 ~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~----~i~iwd~~~~~~~  211 (498)
                      +=++|||+.+...+ ..+.+.+.|.++.+...+.....    ....++++|+|+++.+.+.+.    ++...+.......
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~  273 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV  273 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence            34677887664333 35677888888765555544332    345678999999998886422    3333333222211


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC----C-eeeEEEeccCCCeeEEEEeC
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----N-KLSLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~----~-~~~~~~~~~~~~v~~~~~~~  286 (498)
                      ..+....                    ..++.++|++...+  ++.|.+.|..+    + +.+..+ .-......+.++ 
T Consensus       274 vvfni~~--------------------iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vS-  329 (635)
T PRK02888        274 VVFNIAR--------------------IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTS-  329 (635)
T ss_pred             EEEchHH--------------------HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEEC-
Confidence            1111110                    01345578876663  67899999988    3 444444 455667889998 


Q ss_pred             CCCCEEEEe-eCCCeEEEEcCccccC--------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          287 ESGHLIYSG-SDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       287 ~~~~~l~s~-s~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      |++++++++ ..+.+|.|.|+.....        ....+....- .......+|.++|+...+..-|..|..||+..
T Consensus       330 PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        330 PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            666665554 5589999999973221        0111222222 22334678999999888889999999999876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.049  Score=52.05  Aligned_cols=261  Identities=16%  Similarity=0.148  Sum_probs=156.5

Q ss_pred             ceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE-EEECCCeEEEEECCCCce
Q 010883          133 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~  210 (498)
                      ....+...++|..+.... ....+.+-+.... ........ +. .....++.++.+..+. ....++.|.+.|..+.+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~~~~~-g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQSLSV-GG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccc-eeeeeccC-CC-ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence            455677888885444433 2224444444421 11111111 10 3456778888887444 444568999999766655


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      ........                 ....++++++++.+.++..   ++.+.+.|-.+++.......-..+ ..+++. +
T Consensus       109 ~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p  169 (381)
T COG3391         109 LGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-P  169 (381)
T ss_pred             eeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-C
Confidence            44433222                 4567899999988777765   688999999999988875544444 889997 6


Q ss_pred             CCCEEEEe-eCCCeEEEEcCccccCCCceeE-E---eccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCcc
Q 010883          288 SGHLIYSG-SDDNLCKVWDRRCLNVKGKPAG-V---LMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNA  359 (498)
Q Consensus       288 ~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~-~---~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~  359 (498)
                      +++.++.. ..++.|.+.|..    ...... .   ...-......+.++|+|..+.+....   +.+...|..+...  
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v--  243 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTS----GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV--  243 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCC----CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE--
Confidence            67755444 478999999975    222221 0   11122334578899999976655443   4788888776321  


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCc
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGE  438 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~  438 (498)
                                                       .......   ... ......++|+|+++.+... .+.+.+.|..+..
T Consensus       244 ---------------------------------~~~~~~~---~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         244 ---------------------------------TATDLPV---GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             ---------------------------------EEecccc---ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence                                             1110000   000 1122356778999888855 4889999998887


Q ss_pred             EEEEeccCC---CCeeeeEEcCC
Q 010883          439 QVAALKYHT---SPVRDCSWHPS  458 (498)
Q Consensus       439 ~~~~~~~h~---~~v~~l~~sp~  458 (498)
                      .........   ..+..+++.+.
T Consensus       287 v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         287 VVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             eeeeecccccccccceeccceee
Confidence            776654332   23455555544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.015  Score=51.08  Aligned_cols=175  Identities=14%  Similarity=0.106  Sum_probs=117.4

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..+.+....|.++.|+|+.+.|++......-.||=...|..+.......-+  ..-.+.+.-++++.++--.+..+.++.
T Consensus        79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEE
Confidence            345566667999999999998888877777667766667666654433322  356678888888888877788898888


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE---ecc------
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAH------  275 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~------  275 (498)
                      +..+...........      +.....+.......++|.|..+.|..+-...-+.||.+.........   ..+      
T Consensus       157 vd~~t~~~~~~~~~i------~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         157 VDADTTVISAKVQKI------PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             EcCCccEEeccceEE------eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            876543222221111      00011111346788999998888888888777777776543311111   111      


Q ss_pred             -CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          276 -TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       276 -~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                       -..|.++.|.+..+++++-+..++.+.-.|..
T Consensus       231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             EeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence             24678889988889999999999999888874

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.64  E-value=0.051  Score=50.43  Aligned_cols=250  Identities=14%  Similarity=0.130  Sum_probs=115.9

Q ss_pred             ECCCCeEEEEEeecCCC--ceeEEEEEeCCCCCeEEEEEC-C--CeEEEEECCCCceeccccccccccCccccccCCCCc
Q 010883          159 DVERGWKIQKDILAKSL--RWTVTDTSLSPDQRHLVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY  233 (498)
Q Consensus       159 ~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~s~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  233 (498)
                      |..+|..+.++.....+  ..-.+.=+|.+||+.|+.++. +  ..+.+.|+.+++..++......              
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~--------------   81 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD--------------   81 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--------------
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--------------
Confidence            55666555544333221  111223367889987777665 4  4788889999988776653321              


Q ss_pred             eecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe-CCCCCEEEEeeC---------------
Q 010883          234 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-DESGHLIYSGSD---------------  297 (498)
Q Consensus       234 ~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~s~---------------  297 (498)
                        ......++|+.+.++.......|+-.|+.+.+....+......+-...|. ..++..++-.-.               
T Consensus        82 --~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~  159 (386)
T PF14583_consen   82 --NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR  159 (386)
T ss_dssp             ---TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred             --CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence              11134667888887766666789999999988765555555555556664 344555432211               


Q ss_pred             -------CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCCCccccccCc
Q 010883          298 -------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGF  365 (498)
Q Consensus       298 -------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~  365 (498)
                             ...|..-|+.    .++. ..+......+..+.|+|....+++-+..|     .-+||-++...         
T Consensus       160 e~~~a~p~~~i~~idl~----tG~~-~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg---------  225 (386)
T PF14583_consen  160 EFYEARPHCRIFTIDLK----TGER-KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG---------  225 (386)
T ss_dssp             HHHHC---EEEEEEETT----T--E-EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------
T ss_pred             HHHhhCCCceEEEEECC----CCce-eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------
Confidence                   1123333443    3333 33333456678889999666555544333     23677766522         


Q ss_pred             ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-----CCeEEEEECCCCcEE
Q 010883          366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----DSCVYVYDLVSGEQV  440 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg~i~iwd~~~~~~~  440 (498)
                                              .....+..+....    .+-...|+|||..|.--+.     +..|.-+|+.+++..
T Consensus       226 ------------------------~~~~~v~~~~~~e----~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  226 ------------------------SNVKKVHRRMEGE----SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             ---------------------------EESS---TTE----EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             ------------------------CcceeeecCCCCc----ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence                                    1112222221111    1122246668877665332     446777888887654


Q ss_pred             EEeccCCCCeeeeEEcCCCCeEEEEeCC
Q 010883          441 AALKYHTSPVRDCSWHPSQPMLVSSSWD  468 (498)
Q Consensus       441 ~~~~~h~~~v~~l~~sp~~~~l~s~~~D  468 (498)
                      ....  ......+.-++||+++|-=+.|
T Consensus       278 ~~~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  278 RLME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             EEEe--CCceeeeEEcCCCCEEEecCCC
Confidence            3322  2245567778899877655554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.63  E-value=9.9e-05  Score=61.66  Aligned_cols=151  Identities=13%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      .+..-+.||.|+-++++.....   ...-.-+.....-+.   -+..+++|+.+|.|.+|...........         
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s---~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~---------   96 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKES---CRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDR---------   96 (238)
T ss_pred             hhccccCCcccccchhhhhhhh---hhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHh---------
Confidence            4556677889988887622111   111111222211122   3456899999999999988732111000         


Q ss_pred             cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC-CC
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SP  449 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~  449 (498)
                                              +...   ...+.+.+  .--.++.+..+++.||.|+.|++..++.+.....|. .+
T Consensus        97 ------------------------~~s~---~e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   97 ------------------------VCSG---EESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             ------------------------hhcc---cccceecc--ccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence                                    0000   00000000  111256689999999999999999999888888887 77


Q ss_pred             eeeeEEcCCCCeEEEE--eCCCcEEEecCCCCCCCCCc
Q 010883          450 VRDCSWHPSQPMLVSS--SWDGDVVRWEFPGNGEAAPP  485 (498)
Q Consensus       450 v~~l~~sp~~~~l~s~--~~Dg~i~iw~~~~~~~~~~~  485 (498)
                      +..+..+..+++|+.+  |.|..++.|++....+..+.
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~i  185 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDESPI  185 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchhhhhccCcc
Confidence            8888888888888888  89999999999876655443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.62  E-value=0.065  Score=50.90  Aligned_cols=72  Identities=15%  Similarity=0.061  Sum_probs=45.4

Q ss_pred             EEEEcCCCCEEEEEECCCeEEE---EECCC-----CeEEEEEeecCCCc--eeEEEEEeCC-----------CCCeEEEE
Q 010883          136 VSQFSADGSLFVAGFQASQIRI---YDVER-----GWKIQKDILAKSLR--WTVTDTSLSP-----------DQRHLVYA  194 (498)
Q Consensus       136 ~~~~s~dg~~la~~~~dg~i~v---w~~~~-----~~~~~~~~~~~~~~--~~v~~~~~sp-----------~~~~l~~~  194 (498)
                      .++.+|+|.+||.+..+..+.+   |+...     +.........-.+.  ..|+++.+-|           |...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            5689999999999987776555   54311     11111111111111  4677776643           45788999


Q ss_pred             ECCCeEEEEECCC
Q 010883          195 SMSPIVHIVDVGS  207 (498)
Q Consensus       195 s~d~~i~iwd~~~  207 (498)
                      ..+|.|++|....
T Consensus        86 ~ssG~vrfyte~G   98 (415)
T PF14655_consen   86 TSSGYVRFYTENG   98 (415)
T ss_pred             ecccEEEEEeccc
Confidence            9999999998743

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.053  Score=49.61  Aligned_cols=225  Identities=12%  Similarity=0.142  Sum_probs=122.8

Q ss_pred             EeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883          183 SLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  261 (498)
Q Consensus       183 ~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw  261 (498)
                      .|.|+...|+.+. ..+.|+-|+..+++........                  .+.++.....+..|+++ ..| +.++
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~------------------~~~~~~~~d~~g~Lv~~-~~g-~~~~   90 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG------------------GFSSGALIDAGGRLIAC-EHG-VRLL   90 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC------------------CcccceeecCCCeEEEE-ccc-cEEE
Confidence            4677777555443 4678888888766543322211                  23444444444445554 333 7777


Q ss_pred             ECCCCeeeEEEec-----cCCCeeEEEEeCCCCCEEEEeeC-----------CCeEEEEcCccccCCCceeEEecccccc
Q 010883          262 DLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSD-----------DNLCKVWDRRCLNVKGKPAGVLMGHLEG  325 (498)
Q Consensus       262 d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~  325 (498)
                      +..++..+..+..     .....+.+... +++.+.++...           -|.|+.+|.     .+..+..+..+-..
T Consensus        91 ~~~~~~~~t~~~~~~~~~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-----~g~~~~l~~~~~~~  164 (307)
T COG3386          91 DPDTGGKITLLAEPEDGLPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-----DGGVVRLLDDDLTI  164 (307)
T ss_pred             eccCCceeEEeccccCCCCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcC-----CCCEEEeecCcEEe
Confidence            7766655333321     11344566664 56665554333           133444443     24455555555666


Q ss_pred             EEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCce-EEEEccCceeEE
Q 010883          326 ITFIDSRGDGRYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-VATYKGHSVLRT  403 (498)
Q Consensus       326 v~~l~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  403 (498)
                      -+.|+||||++.|+.+... +.|.-|++........                            +.. ...+....  ..
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~----------------------------~~~~~~~~~~~~--G~  214 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG----------------------------GRRGFVDFDEEP--GL  214 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC----------------------------CcceEEEccCCC--CC
Confidence            7889999999888776654 6788887763110000                            010 01111000  00


Q ss_pred             EEEEEeccccCCCCcEEEEEecCC-eEEEEECCCCcEEEEeccCCCCeeeeEEcC-CCC-eEEEEeCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQP-MLVSSSWD  468 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~-~l~s~~~D  468 (498)
                      .-.    .+...+|.+-+++..+| .|.+|+.. |+++..+......+++++|-- +.+ +++|+...
T Consensus       215 PDG----~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         215 PDG----MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             CCc----eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            000    12233677665555554 89999987 999999887767888888853 344 44444433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.61  E-value=0.011  Score=44.10  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=50.5

Q ss_pred             eeEEEEeCCC---CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          279 VNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       279 v~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      |+++++.+-+   .+.|++|+.|..|++|+      ....+..+. ..+.|+.+.-... ..++.+-.+|+|.+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~------~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK------GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe------CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence            6777776433   36899999999999998      446666665 3467778776655 568889999999999753

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.60  E-value=0.0058  Score=53.07  Aligned_cols=193  Identities=17%  Similarity=0.198  Sum_probs=110.6

Q ss_pred             EEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----------------
Q 010883          138 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------------  196 (498)
Q Consensus       138 ~~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----------------  196 (498)
                      .|||||.+|.+.-.     -|.|-|||...+  .++.-....|.-....+.|.+||+.|+.+..                
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld  197 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD  197 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence            59999999987644     378999999865  4555555566666788999999999988642                


Q ss_pred             --CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeee
Q 010883          197 --SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLS  269 (498)
Q Consensus       197 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~-----i~vwd~~~~~~~  269 (498)
                        ...+.+.|..+|+.+....++...            +.-.|..++..+||+.++.+-..|.     -.+=-...++.+
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~l------------~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l  265 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPASL------------RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL  265 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchhh------------hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence              123444554555544443333211            2236888888888875444432221     111111222222


Q ss_pred             EEEe-------ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883          270 LRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       270 ~~~~-------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      .-+.       .....|-+|+.+..++-..+++-..+...+||..    ++..+..-.  ......++  +...-+++.+
T Consensus       266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~--l~daaGva--~~~~gf~vss  337 (366)
T COG3490         266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA----TGAVVSEAA--LPDAAGVA--AAKGGFAVSS  337 (366)
T ss_pred             cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC----CCcEEeccc--ccccccce--eccCceEEec
Confidence            2221       2335678888874444444444455567889987    555443221  11122222  2344567777


Q ss_pred             CCCcEEEEeC
Q 010883          343 KDQAIKLWDI  352 (498)
Q Consensus       343 ~dg~i~iwd~  352 (498)
                      .+|.+.++.-
T Consensus       338 g~G~~~~~s~  347 (366)
T COG3490         338 GQGRIIFYSR  347 (366)
T ss_pred             CCceEEeccc
Confidence            7888888743

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.60  E-value=0.011  Score=44.06  Aligned_cols=100  Identities=22%  Similarity=0.272  Sum_probs=67.2

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883          237 IFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK  312 (498)
Q Consensus       237 i~~~~~s~---~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  312 (498)
                      |+++++..   || +.|++|+.|..|++|+-.  +.+..+ .....|++++-.  ....|+.+..+|+|-+|+-.     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-~e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~-----   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-TETDKVTSLCSL--GGGRFAYALANGTVGVYDRS-----   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-ecccceEEEEEc--CCCEEEEEecCCEEEEEeCc-----
Confidence            45555554   33 589999999999999744  455555 345677888775  34679999999999999853     


Q ss_pred             CceeEEeccccccEEEEEEc-CC--C-CEEEEEeCCCcEE
Q 010883          313 GKPAGVLMGHLEGITFIDSR-GD--G-RYLISNGKDQAIK  348 (498)
Q Consensus       313 ~~~~~~~~~~~~~v~~l~~~-~~--~-~~l~s~~~dg~i~  348 (498)
                       ..+...+.... ++++.+. .+  | ..|++|-.+|.|-
T Consensus        72 -~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 -QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             33444443333 5555543 33  2 3688888888764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.57  E-value=0.085  Score=50.87  Aligned_cols=192  Identities=11%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCce-------eEEeccccccEEEE
Q 010883          257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP-------AGVLMGHLEGITFI  329 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~~~~~v~~l  329 (498)
                      .|.||+.. |+.+.++.-..+.+.++.|+ . .+.|++-..||.+++||+.     +..       +....-....+...
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~-----G~~~fsl~~~i~~~~v~e~~i~~~  133 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLF-----GEFQFSLGEEIEEEKVLECRIFAI  133 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCC-----CceeechhhhccccCccccccccc
Confidence            59999865 45556665444899999997 4 4556677899999999984     222       11111111112222


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccc------cccCcccc-cccceee--cCC-cCcccccCCCCceEEEEccCc
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNAS------CNLGFRSY-EWDYRWM--DYP-PQARDLKHPCDQSVATYKGHS  399 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~  399 (498)
                      .+..+|-.+++  .++.+.+.  ........      ........ .+.....  .+. .....+....+..+..+..+.
T Consensus       134 ~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  134 WFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence            33335533333  34444333  22221100      00000000 0000000  011 111122222233333333322


Q ss_pred             e-eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC-CCCeeeeEEcCCCC
Q 010883          400 V-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQP  460 (498)
Q Consensus       400 ~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~  460 (498)
                      . ..........++.||+|++||.-..+|.+.+....-.+.+..+... ......+.|+-+..
T Consensus       210 ~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  210 FKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             cccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            1 0000011334467889999999999999999987666676666533 35667888876654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00072  Score=64.76  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=66.5

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEE-EEEeCCCCCeEEEEECCCeEEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      .+......|.-+.|+|.-.++|++..+|.|.++.++-. ++..   ..-+...++ +++|.|||+.||+|-.||+|++.|
T Consensus        15 ~~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-Rlwt---ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   15 GVMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-RLWT---IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD   90 (665)
T ss_pred             hhhccccceEEEEEcCccchhheeccCCcEEEEEeccc-eeEe---ccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence            33445667899999999999999999999999988732 3332   222333555 999999999999999999999999


Q ss_pred             CCCCceecc
Q 010883          205 VGSGTMESL  213 (498)
Q Consensus       205 ~~~~~~~~~  213 (498)
                      ++++.....
T Consensus        91 ve~~~~l~~   99 (665)
T KOG4640|consen   91 VEKGGRLVS   99 (665)
T ss_pred             ccCCCceec
Confidence            998876544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.44  E-value=0.18  Score=51.70  Aligned_cols=63  Identities=8%  Similarity=0.133  Sum_probs=50.5

Q ss_pred             CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +|++||.-  ...|++|+..+.+.+..-..|..++..+...-.+..++.|..=+.|.+..+...+
T Consensus       839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence            67777654  4679999998887776666788899999999899999999988888877665544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.43  E-value=0.018  Score=58.87  Aligned_cols=143  Identities=15%  Similarity=0.198  Sum_probs=94.9

Q ss_pred             CeEEEE-ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-----CCCEEEEEeCCCeEEEEE
Q 010883          189 RHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYD  262 (498)
Q Consensus       189 ~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~g~~l~~g~~dg~i~vwd  262 (498)
                      ++|+.. .....|+-.|++.|+.+..+......               +|..++-..     +...-+.|-.+..++.||
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~---------------~v~~~~p~~K~aqlt~e~tflGls~n~lfriD  558 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI---------------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID  558 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCc---------------ceeEecccccccccCCCceEEEECCCceEEec
Confidence            444443 34578999999999988877764321               244333221     123456677778899999


Q ss_pred             CCCCe--eeEE---EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883          263 LEANK--LSLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       263 ~~~~~--~~~~---~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                      .+-..  ++..   ........+|++-+  ...+||+|+.+|.||+||.-    .......+.+...+|..|..+.||++
T Consensus       559 pR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~----g~~AKT~lp~lG~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  559 PRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRL----GKRAKTALPGLGDPIIGIDVTADGKW  632 (794)
T ss_pred             cCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeeccc----chhhhhcCCCCCCCeeEEEecCCCcE
Confidence            87532  2211   11234566777764  45588999999999999953    23344456677899999999999999


Q ss_pred             EEEEeCCCcEEEEeCC
Q 010883          338 LISNGKDQAIKLWDIR  353 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~  353 (498)
                      |++.+ +..|.+++..
T Consensus       633 ilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  633 ILATC-KTYLLLIDTL  647 (794)
T ss_pred             EEEee-cceEEEEEEe
Confidence            88665 4567788764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.43  E-value=0.16  Score=50.70  Aligned_cols=160  Identities=13%  Similarity=0.125  Sum_probs=89.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC---CCCeEEEEE------CCCeEEEEECCCCceeccc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYAS------MSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~s------~d~~i~iwd~~~~~~~~~~  214 (498)
                      ..++.++.|+.|.-.|..+|+.+.+..... +.. -..+.-+|   ++. ++++.      .+|.|..+|.++|+.....
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-~~~-~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGD-YKA-GYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeccccc-ccc-cccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEec
Confidence            457778889999999999997776543221 110 00111122   343 44443      2689999999999876654


Q ss_pred             cccccccC----------cccccc----CCCCc-eecEE-EEEEcCCCCEEEEEeCC-----C-----------eEEEEE
Q 010883          215 NVTEIHDG----------LDFSAA----DDGGY-SFGIF-SLKFSTDGRELVAGSSD-----D-----------CIYVYD  262 (498)
Q Consensus       215 ~~~~~~~~----------~~~~~~----~~~~h-~~~i~-~~~~s~~g~~l~~g~~d-----g-----------~i~vwd  262 (498)
                      ........          .+....    ....+ ...+. .+++.+...++..+..+     +           +|.-.|
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence            43321100          000000    00001 11121 34666666666665522     2           677889


Q ss_pred             CCCCeeeEEEeccCCCe---------eEEEEeCCCCC---EEEEeeCCCeEEEEcCc
Q 010883          263 LEANKLSLRILAHTSDV---------NTVCFGDESGH---LIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       263 ~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~---~l~s~s~dg~i~vwd~~  307 (498)
                      +++++..-.+......+         .-+.. +.+++   .++.+..+|.+.+.|.+
T Consensus       278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~  333 (527)
T TIGR03075       278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDL-KKDGKPRKLLAHADRNGFFYVLDRT  333 (527)
T ss_pred             cccCCEEEeeeCCCCCCccccCCCCcEEEEe-ccCCcEEEEEEEeCCCceEEEEECC
Confidence            99999876665322211         11222 23554   78899999999999997

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.41  E-value=0.11  Score=48.53  Aligned_cols=57  Identities=19%  Similarity=0.223  Sum_probs=40.9

Q ss_pred             CCcEEEEEecCCeEEEEECCCCcEEEE----eccCCCCeeeeEEcCCCCeEEEEeCCCcEE
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGEQVAA----LKYHTSPVRDCSWHPSQPMLVSSSWDGDVV  472 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~  472 (498)
                      .|.++++.-..+.|....+..+..+..    +......+.++++.|||.++++.+.+|.|+
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            677787777778898888875533221    223445899999999999988888899874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0092  Score=56.38  Aligned_cols=144  Identities=15%  Similarity=0.234  Sum_probs=95.2

Q ss_pred             CCCeEEE-EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-------EEEEEeCCCeE
Q 010883          187 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI  258 (498)
Q Consensus       187 ~~~~l~~-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-------~l~~g~~dg~i  258 (498)
                      +.++|+. +.....++-.|++.|+.+..+....                 .|.-+.+.|+.+       .-+.|-.+..|
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~-----------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~v  406 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED-----------------DINMVDITPDFKFAQLTSEQTLVGLSDNSV  406 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccC-----------------CcceeeccCCcchhcccccccEEeecCCce
Confidence            4444444 4444568888999999877776544                 245555666443       12456667789


Q ss_pred             EEEECCCCee--eEEEecc----CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          259 YVYDLEANKL--SLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       259 ~vwd~~~~~~--~~~~~~~----~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                      +-||.+-...  +.....|    .....|.+-  ...-++++||.+|.|++||.-    .......+.+...+|..+..+
T Consensus       407 friDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri----~~~AKTAlPgLG~~I~hVdvt  480 (644)
T KOG2395|consen  407 FRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRI----GRRAKTALPGLGDAIKHVDVT  480 (644)
T ss_pred             EEecccccCcceeeeeeccccccccccceeee--cCCceEEEeecCCcEEeehhh----hhhhhhcccccCCceeeEEee
Confidence            9999864322  1111222    234455555  345689999999999999974    344455677788999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC
Q 010883          333 GDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .+|++|+..+ +..+.+.++.-
T Consensus       481 adGKwil~Tc-~tyLlLi~t~~  501 (644)
T KOG2395|consen  481 ADGKWILATC-KTYLLLIDTLI  501 (644)
T ss_pred             ccCcEEEEec-ccEEEEEEEec
Confidence            9999887654 55677777654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.38  E-value=0.16  Score=49.45  Aligned_cols=248  Identities=16%  Similarity=0.193  Sum_probs=123.8

Q ss_pred             eEEEEEeCCCCCeEEEEE-CCC----eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          178 TVTDTSLSPDQRHLVYAS-MSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      .+....++|++++||.+- ..|    .++++|+.+++..... +..                .....+.|.++++.|+..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~----------------~~~~~~~W~~d~~~~~y~  187 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN----------------PKFSSVSWSDDGKGFFYT  187 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE----------------EESEEEEECTTSSEEEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc----------------cccceEEEeCCCCEEEEE
Confidence            455788999999998763 333    6999999998654321 110                012239999998887766


Q ss_pred             eCC-----------CeEEEEECCCCeee--EEEeccCCC--eeEEEEeCCCCCEEEEeeCC----CeEEEEcCccccCCC
Q 010883          253 SSD-----------DCIYVYDLEANKLS--LRILAHTSD--VNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKG  313 (498)
Q Consensus       253 ~~d-----------g~i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~  313 (498)
                      ..+           ..|+.|.+.+....  ..+......  ...+..+ .++++|+..+..    ..+.+.|+.......
T Consensus       188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~  266 (414)
T PF02897_consen  188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPD  266 (414)
T ss_dssp             ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred             EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence            533           24888888876533  333333333  4567776 777777654332    346777775210001


Q ss_pred             ceeEEeccccccEE-EEEEcCCCCEEEEEe---CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883          314 KPAGVLMGHLEGIT-FIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD  389 (498)
Q Consensus       314 ~~~~~~~~~~~~v~-~l~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (498)
                      .....+......+. .+... .+.+++...   ..+.|...++......                               
T Consensus       267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-------------------------------  314 (414)
T PF02897_consen  267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA-------------------------------  314 (414)
T ss_dssp             -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG-------------------------------
T ss_pred             CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc-------------------------------
Confidence            22333333333333 34333 333333322   2345666666653210                               


Q ss_pred             ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC--eEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCe-EE-E
Q 010883          390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPM-LV-S  464 (498)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~-l~-s  464 (498)
                      .....+-.+.....+..+..  .   .+.+++....++  .|+++++..+.....+. .-.+.|..+...++++. .+ .
T Consensus       315 ~~~~~l~~~~~~~~l~~~~~--~---~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~  389 (414)
T PF02897_consen  315 EWWTVLIPEDEDVSLEDVSL--F---KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSY  389 (414)
T ss_dssp             GEEEEEE--SSSEEEEEEEE--E---TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred             cceeEEcCCCCceeEEEEEE--E---CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence            00111111111111111111  1   344555555554  68899998344444433 23445666766666662 23 3


Q ss_pred             EeC--CCcEEEecCCCCC
Q 010883          465 SSW--DGDVVRWEFPGNG  480 (498)
Q Consensus       465 ~~~--Dg~i~iw~~~~~~  480 (498)
                      .|.  -+++..||+.+++
T Consensus       390 ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  390 SSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EETTEEEEEEEEETTTTC
T ss_pred             eCCCCCCEEEEEECCCCC
Confidence            332  2567777877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.36  E-value=0.00061  Score=40.00  Aligned_cols=38  Identities=39%  Similarity=0.626  Sum_probs=33.3

Q ss_pred             ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883          314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       314 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  351 (498)
                      .+...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.33  E-value=0.045  Score=55.04  Aligned_cols=191  Identities=16%  Similarity=0.165  Sum_probs=106.3

Q ss_pred             cCCCCEEEEEECCC------eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-C-----eEEEEECCC
Q 010883          140 SADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-----IVHIVDVGS  207 (498)
Q Consensus       140 s~dg~~la~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~-----~i~iwd~~~  207 (498)
                      +..+.+++.|+.++      .+..||..++.-.... ... ....-.+++.. ++...++|+.| |     .+..||..+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-PMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-CCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence            44567778887763      5788998877222111 111 11123333333 55777888888 3     688889888


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeeeEEEeccCCCeeEE
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      ++......+......            ..+..    -+|...|+|+.||.     |-.||..+.+....- .........
T Consensus       359 ~~W~~~a~M~~~R~~------------~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~  421 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSD------------FGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGH  421 (571)
T ss_pred             CceeccCCccCcccc------------ceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeee
Confidence            886655554432211            11221    16888899998864     777888777653222 122233333


Q ss_pred             EEeCCCCCEEEEeeCCC------eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc-----EEEEe
Q 010883          283 CFGDESGHLIYSGSDDN------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-----IKLWD  351 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~-----i~iwd  351 (498)
                      ....-++.+.++|+.++      ++..||....  ....+..+........ ++. -++.+.+.|+.|+.     |..||
T Consensus       422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~yd  497 (571)
T KOG4441|consen  422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYD  497 (571)
T ss_pred             EEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEc
Confidence            33334678888888665      4667887522  2222222222222222 222 26677888887763     66677


Q ss_pred             CCC
Q 010883          352 IRK  354 (498)
Q Consensus       352 ~~~  354 (498)
                      ..+
T Consensus       498 p~~  500 (571)
T KOG4441|consen  498 PET  500 (571)
T ss_pred             CCC
Confidence            665

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.33  E-value=0.0049  Score=62.82  Aligned_cols=150  Identities=16%  Similarity=0.152  Sum_probs=93.2

Q ss_pred             CCCCEEEEe-eCCCeEEEEcCccccCCCceeEEecccccc-EEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          287 ESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRG-----DGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       287 ~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-v~~l~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      .+.++|+.. .....|+-.|+.    .++.+..+..+... |..++-..     +...-+.|-.+..+..||.|-.....
T Consensus       491 ~d~~mil~~~~~~~~ly~mDLe----~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~  566 (794)
T PF08553_consen  491 QDRNMILLDPNNPNKLYKMDLE----RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL  566 (794)
T ss_pred             cccceEeecCCCCCceEEEecC----CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence            344454443 356788999998    89999999887654 55554321     12345667778889999998632100


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                      .                            ......|....   .     |+..-+....+||+|+.+|.||+||-...+.
T Consensus       567 v----------------------------~~~~k~Y~~~~---~-----Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~A  610 (794)
T PF08553_consen  567 V----------------------------DSQSKQYSSKN---N-----FSCFATTEDGYIAVGSNKGDIRLYDRLGKRA  610 (794)
T ss_pred             e----------------------------eccccccccCC---C-----ceEEEecCCceEEEEeCCCcEEeecccchhh
Confidence            0                            00011111111   1     1111122456899999999999999543333


Q ss_pred             EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       440 ~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ...+.+-..+|.+|..+.||++|+..+ +..|.+++..
T Consensus       611 KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  611 KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            344556789999999999999877666 4567777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02713 hypothetical protein; Provisional

Probab=97.33  E-value=0.026  Score=56.76  Aligned_cols=93  Identities=13%  Similarity=0.188  Sum_probs=50.3

Q ss_pred             CCCeEEEEECC------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC----
Q 010883          187 DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----  256 (498)
Q Consensus       187 ~~~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg----  256 (498)
                      ++...+.|+.+      ..+..||..++.......+.....              .. +++ .-+|+..+.|+.++    
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~--------------~~-~~~-~~~g~IYviGG~~~~~~~  366 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC--------------RF-SLA-VIDDTIYAIGGQNGTNVE  366 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh--------------ce-eEE-EECCEEEEECCcCCCCCC
Confidence            66777777753      357788888776544433322110              11 122 22677778887654    


Q ss_pred             -eEEEEECCCCeeeEEEeccCCCe--eEEEEeCCCCCEEEEeeCC
Q 010883          257 -CIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD  298 (498)
Q Consensus       257 -~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~s~d  298 (498)
                       .+..||..+++... +..-..+.  .+++.  -++.+.+.|+.+
T Consensus       367 ~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~~--~~g~IYviGG~~  408 (557)
T PHA02713        367 RTIECYTMGDDKWKM-LPDMPIALSSYGMCV--LDQYIYIIGGRT  408 (557)
T ss_pred             ceEEEEECCCCeEEE-CCCCCcccccccEEE--ECCEEEEEeCCC
Confidence             48889988775432 11111111  12222  356777777755

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.31  E-value=0.04  Score=55.36  Aligned_cols=230  Identities=17%  Similarity=0.185  Sum_probs=123.5

Q ss_pred             CCCeEEEEECC------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----
Q 010883          187 DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----  255 (498)
Q Consensus       187 ~~~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----  255 (498)
                      .+.+++.|+.+      ..+..+|..++........+...               .-.+++.. ++...++|+.+     
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r---------------~~~~~~~~-~~~lYv~GG~~~~~~~  347 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR---------------CRVGVAVL-NGKLYVVGGYDSGSDR  347 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc---------------ccccEEEE-CCEEEEEccccCCCcc
Confidence            34556666665      36888888887665555544221               22334444 45778888888     


Q ss_pred             -CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe-----EEEEcCccccCCCceeEEeccccccEEEE
Q 010883          256 -DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-----CKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       256 -g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                       .++..||..+++... +..-...-..+....-++.+.++|+.||.     |-.||....  ....+..+.......-..
T Consensus       348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~  424 (571)
T KOG4441|consen  348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVA  424 (571)
T ss_pred             cceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEE
Confidence             357888988877543 22211111112222246788899999874     667777522  222232222212222222


Q ss_pred             EEcCCCCEEEEEeCCC------cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          330 DSRGDGRYLISNGKDQ------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      .+  +|...++|+.++      .+..||..+..-...                                ..+....   .
T Consensus       425 ~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--------------------------------~~M~~~R---~  467 (571)
T KOG4441|consen  425 VL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--------------------------------APMNTRR---S  467 (571)
T ss_pred             EE--CCEEEEEcCcCCCccccceEEEEcCCCCceeec--------------------------------CCccccc---c
Confidence            22  677888888654      456677665321111                                0000000   0


Q ss_pred             EEEEEeccccCCCCcEEEEEecCC-----eEEEEECCCCcEEE--EeccCCCCeeeeEEcCCCCeEEEEeCCCc-----E
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDS-----CVYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDGD-----V  471 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~-----i  471 (498)
                      ...     ...-++.+.+.|+.|+     +|..||..+.+-..  ........+..+.+  ++...+.|+.||.     |
T Consensus       468 ~~g-----~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~v  540 (571)
T KOG4441|consen  468 GFG-----VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTV  540 (571)
T ss_pred             cce-----EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcccccee
Confidence            000     0011678888888776     37788887765432  23333333333444  6778888888874     6


Q ss_pred             EEecCCCC
Q 010883          472 VRWEFPGN  479 (498)
Q Consensus       472 ~iw~~~~~  479 (498)
                      ..||...+
T Consensus       541 e~ydp~~d  548 (571)
T KOG4441|consen  541 ECYDPETD  548 (571)
T ss_pred             EEcCCCCC
Confidence            66765544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.28  E-value=0.11  Score=49.44  Aligned_cols=71  Identities=15%  Similarity=0.218  Sum_probs=49.4

Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc----CC----------------CC-eEEEEeCC
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH----PS----------------QP-MLVSSSWD  468 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s----p~----------------~~-~l~s~~~D  468 (498)
                      +.+.+|++++.|+...=|.|.++|+.++..+..+++..+.=  +.|-    +.                .. +++-+-.-
T Consensus       312 ~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  312 SICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            34567789999998778999999999998887777654321  1110    00                11 34456678


Q ss_pred             CcEEEecCCCCCCC
Q 010883          469 GDVVRWEFPGNGEA  482 (498)
Q Consensus       469 g~i~iw~~~~~~~~  482 (498)
                      |.|-||.+..+...
T Consensus       390 g~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  390 GILEVWSMRQGPRV  403 (415)
T ss_pred             CeEEEEecCCCCEE
Confidence            99999999887654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.0024  Score=60.15  Aligned_cols=146  Identities=15%  Similarity=0.173  Sum_probs=94.2

Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE-------EEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-------LISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-------l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      +|.++.....++-.|+.    .++.+..+.-+.. |+-+.+.|+.+.       -+.|-.|..|.-||.|-...      
T Consensus       348 il~~~~~~~~l~klDIE----~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------  416 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIE----RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------  416 (644)
T ss_pred             EeeCCCCcCcceeeecc----cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------
Confidence            44455566678888887    8889988887766 777888886532       24466788899999884221      


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                                ..+..-.+|......   .|+..-.....+|++|+.+|.|++||--....-..+
T Consensus       417 --------------------------~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAl  467 (644)
T KOG2395|consen  417 --------------------------NKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTAL  467 (644)
T ss_pred             --------------------------ceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcc
Confidence                                      112222222211111   111111124568999999999999997333344556


Q ss_pred             ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       444 ~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      .+-..+|..+..+.+|++|+..+ +..+.+-++.
T Consensus       468 PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  468 PGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            77889999999999999777665 4455555544

>PHA02713 hypothetical protein; Provisional

Probab=97.24  E-value=0.028  Score=56.54  Aligned_cols=63  Identities=5%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             CCcEEEEEecC------CeEEEEECCC-Cc--EEEEeccCCCCeeeeEEcCCCCeEEEEeCCC--cEEEecCCCCC
Q 010883          416 GQKYIYTGSHD------SCVYVYDLVS-GE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNG  480 (498)
Q Consensus       416 ~~~~l~~g~~d------g~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg--~i~iw~~~~~~  480 (498)
                      ++++.+.|+.+      ..+..||..+ .+  .+..+.........+.+  ++++.++||.||  .+-.||..+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            56766777654      2467899886 33  33444333333333344  788999999998  67777776553

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.21  E-value=0.17  Score=46.33  Aligned_cols=195  Identities=14%  Similarity=0.079  Sum_probs=106.6

Q ss_pred             EEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee-cccc
Q 010883          138 QFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLAN  215 (498)
Q Consensus       138 ~~s~dg~~-la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~-~~~~  215 (498)
                      .|.++... +.+--..+.|.-|+..++....  .....   .+.++..-..+..|+++.  .-+.+++.+++... ....
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--~~~p~---~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--FPSPG---GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--EECCC---CcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence            47777764 4445567889999988662221  11122   234444433444444432  23667777655542 2221


Q ss_pred             ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      .....            -....+.+...|+|.+.+....           -|.|+.+|. .+..+..+..+-..-+.|+|
T Consensus       104 ~~~~~------------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~  170 (307)
T COG3386         104 PEDGL------------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAF  170 (307)
T ss_pred             ccCCC------------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEE
Confidence            11110            1125667888889875444322           134555554 45555555555666789999


Q ss_pred             eCCCCCEEEEeeC-CCeEEEEcCcc--ccCCCce-eEEeccccccEEEEEEcCCCCEEEEEeCCC-cEEEEeCC
Q 010883          285 GDESGHLIYSGSD-DNLCKVWDRRC--LNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIR  353 (498)
Q Consensus       285 ~~~~~~~l~s~s~-dg~i~vwd~~~--~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~  353 (498)
                      + ++++.|+.+.. .+.|.-|++..  ....... ...+....+..-.++...+|.+.+++..+| .|.+|+..
T Consensus       171 S-pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         171 S-PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             C-CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            8 66766665554 47888887752  1111111 222222345555677777888776554444 78888876

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.0026  Score=61.13  Aligned_cols=92  Identities=14%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883          236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK  314 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  314 (498)
                      .+.-+.|+|.-..+|.+..+|.|.+..++ .+.+..+.-|...++ +++|. ++|++|+.|-.||+|++.|+.    .+.
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve----~~~   95 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVE----KGG   95 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEcc----CCC
Confidence            68889999999999999999999999988 666777876777777 99997 889999999999999999998    555


Q ss_pred             eeEEe-ccccccEEEEEEcC
Q 010883          315 PAGVL-MGHLEGITFIDSRG  333 (498)
Q Consensus       315 ~~~~~-~~~~~~v~~l~~~~  333 (498)
                      .+... ......|.++-|.+
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            55442 22345666666653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.16  E-value=0.15  Score=45.56  Aligned_cols=147  Identities=20%  Similarity=0.187  Sum_probs=88.0

Q ss_pred             ceEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE-CCCC
Q 010883          133 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG  208 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd-~~~~  208 (498)
                      .+...++|+||+.+|...   ....++++.....  .....  .+  ..++.-.|++++...+....+...+++. ..++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            688999999999887765   3344666655433  22222  22  2688889999988777766666666664 2333


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe---CCCeEEEEECCC---C--e----eeEEEeccC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEA---N--K----LSLRILAHT  276 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~---~dg~i~vwd~~~---~--~----~~~~~~~~~  276 (498)
                      ......- ..         .   .-...|..++++|||..++...   .++.|.+--+..   +  .    .........
T Consensus        99 ~~~~~~v-~~---------~---~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~  165 (253)
T PF10647_consen   99 TGEPVEV-DW---------P---GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL  165 (253)
T ss_pred             cceeEEe-cc---------c---ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence            2211110 00         0   0011699999999999888766   357777765532   2  0    111111334


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCC
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDN  299 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg  299 (498)
                      ..+..+.|. .+..+++.+...+
T Consensus       166 ~~v~~v~W~-~~~~L~V~~~~~~  187 (253)
T PF10647_consen  166 SDVTDVAWS-DDSTLVVLGRSAG  187 (253)
T ss_pred             Ccceeeeec-CCCEEEEEeCCCC
Confidence            688999998 5566665555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.16  Score=44.79  Aligned_cols=119  Identities=15%  Similarity=0.144  Sum_probs=84.6

Q ss_pred             ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC--
Q 010883          235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--  311 (498)
Q Consensus       235 ~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--  311 (498)
                      ..+.++.|+|+.+.|++......-.|+=...|+.+.++.- .-.....|.|. .+++++++--.++.+.++.+.....  
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEE
Confidence            3599999999999998888887777777778888887752 23455778887 7777777777888888887652210  


Q ss_pred             ---C-CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          312 ---K-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       312 ---~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                         . .-++........+.-.++|.|....|..+-.-.-+.||....
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence               0 001111122255678899999999898888877788877663

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.08  E-value=0.46  Score=48.99  Aligned_cols=186  Identities=13%  Similarity=0.151  Sum_probs=113.2

Q ss_pred             EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC--------------CeEEEEECCCCcee
Q 010883          146 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHIVDVGSGTME  211 (498)
Q Consensus       146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d--------------~~i~iwd~~~~~~~  211 (498)
                      ||.+ ..+.+++..++.=.++.....  ........+++.+....+.+.+.-              ..++++|-++-+..
T Consensus       687 l~~~-~~~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  687 LASA-NGGALTIGTIDEIQKLHIRTV--PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             EEEe-cCCceEEEEecchhhcceeee--cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            4444 344577776654322222211  122356677777744444443321              13566666655544


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeC----------CCeEEEEECCCCeeeEEEecc--CCC
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS----------DDCIYVYDLEANKLSLRILAH--TSD  278 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~--~~~  278 (498)
                      ..........            ...|.++.|..| +.++++|+.          .|.|.++.+..++.+..+..+  .+.
T Consensus       764 ~~hef~~~E~------------~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  764 SSHEFERNET------------ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             eeccccccce------------eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            4433332221            125667779887 778888863          578888888774444433322  355


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      +.++..  -+++++|  +-...|++|++.    ..+.++.-..+..++..+...-.+..+++|.--+.+.+...+.
T Consensus       832 v~aL~~--fngkllA--~In~~vrLye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~  899 (1096)
T KOG1897|consen  832 VYALVE--FNGKLLA--GINQSVRLYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG  899 (1096)
T ss_pred             eeehhh--hCCeEEE--ecCcEEEEEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence            666554  3466654  345689999986    5667777777888999999988999999998888887776655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.08  E-value=0.22  Score=45.34  Aligned_cols=279  Identities=12%  Similarity=0.123  Sum_probs=122.8

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec--CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      ...+..++|..+..-+|+| ..+.| +-..+.|+.-......  ........++.|..+ ..++ ++..+ +.+...+.+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~DgG   90 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDGG   90 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESSTT
T ss_pred             CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCCC
Confidence            4589999999666666665 45543 2233333222221111  111235677888543 3444 44455 344444555


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeCC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~  287 (498)
                      +.-..........             +....+....++. ....+..|.|+.=. ..++ -......-.+.+..+..+ +
T Consensus        91 ~tW~~v~l~~~lp-------------gs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~-~  154 (302)
T PF14870_consen   91 KTWERVPLSSKLP-------------GSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS-S  154 (302)
T ss_dssp             SS-EE----TT-S-------------S-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE--T
T ss_pred             CCcEEeecCCCCC-------------CCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC-C
Confidence            4322222111110             1233344434443 33344556554332 2333 223333455778888886 8


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      ++.++++++.-....-||.-    ...-...-..-...|..|.|.|++.+.+.+ ..|.|++=+...             
T Consensus       155 dG~~vavs~~G~~~~s~~~G----~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~-------------  216 (302)
T PF14870_consen  155 DGRYVAVSSRGNFYSSWDPG----QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD-------------  216 (302)
T ss_dssp             TS-EEEEETTSSEEEEE-TT-----SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT-------------
T ss_pred             CCcEEEEECcccEEEEecCC----CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC-------------
Confidence            88888888766666788853    211222222345789999999998876654 888888877221             


Q ss_pred             ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE-EEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--
Q 010883          368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR-CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--  444 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--  444 (498)
                                             ....+..+........ -...++|.+++...++|+. |.+ +.....|+.-....  
T Consensus       217 -----------------------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~  271 (302)
T PF14870_consen  217 -----------------------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVG  271 (302)
T ss_dssp             -----------------------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGG
T ss_pred             -----------------------CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccc
Confidence                                   1112211110000000 0133355557776666654 433 34445565444433  


Q ss_pred             -cCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883          445 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       445 -~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                       .-...++.+.|.++.+-++ .+.+|.|.-|
T Consensus       272 ~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  272 ENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             TTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             cCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence             2345678888876655455 4578888766

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.025  Score=58.15  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=74.6

Q ss_pred             CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883          187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      .+..++.|+..|.+-..|+.+.-. ....              .....++|++++|+.+|+.++.|-.+|.|.+||+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~--------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQ--------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc-hhhc--------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            455688888888888888765311 0000              0123448999999999999999999999999999999


Q ss_pred             eeeEEEeccCCCeeEEEEe--CCCCCEEEEeeCCCeEEEEcC
Q 010883          267 KLSLRILAHTSDVNTVCFG--DESGHLIYSGSDDNLCKVWDR  306 (498)
Q Consensus       267 ~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~s~dg~i~vwd~  306 (498)
                      +..+.+..|..+.+.+-+.  ..++..++++...|.  +|.+
T Consensus       163 k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            9998888777666655432  144557888887776  5554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.04  E-value=0.0023  Score=53.77  Aligned_cols=108  Identities=19%  Similarity=0.317  Sum_probs=73.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc
Q 010883          245 DGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL  323 (498)
Q Consensus       245 ~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  323 (498)
                      -+..+++|+.+|.|++|+...-. ....+..-...|.++--.-.++.+..++..||.|+.|++.    ..+.+.....|.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----p~k~~g~~g~h~  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----PNKVLGYVGQHN  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----cCceeeeecccc
Confidence            34569999999999999886221 1111212223333333222455689999999999999997    667776666676


Q ss_pred             -ccEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCC
Q 010883          324 -EGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMS  356 (498)
Q Consensus       324 -~~v~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~  356 (498)
                       .++.....+..++.++.+  +.|..++.|++....
T Consensus       145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             CCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence             566666666667777777  788888888887643

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.03  E-value=0.043  Score=46.46  Aligned_cols=154  Identities=15%  Similarity=0.242  Sum_probs=94.6

Q ss_pred             CCceEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIV  200 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i  200 (498)
                      ..+.+.-..+|+|++++-.-.         .|.++.|-....  +....   ..-+--+.++|+.+.+.+... +.+-+|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~---~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIW---NCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeee---hhccCCccccccccCcEEEEEccCceEE
Confidence            556677788999998553222         355666665432  21111   111234568899887766544 456678


Q ss_pred             EEEE--CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883          201 HIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD  278 (498)
Q Consensus       201 ~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  278 (498)
                      .-||  ..+|.......+........+...       ..-.++...+|.+.++.-..++|...|..+++.+..+.-....
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q  255 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ  255 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence            7788  666654333322222211111110       1123444668888888888999999999999999999888899


Q ss_pred             eeEEEEeCCCCCEEEEee
Q 010883          279 VNTVCFGDESGHLIYSGS  296 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s  296 (498)
                      |+|++|--++-.++++..
T Consensus       256 itsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  256 ITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             eEEEEecCCCccEEEEEe
Confidence            999999755445555443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.0062  Score=62.32  Aligned_cols=102  Identities=11%  Similarity=0.111  Sum_probs=73.9

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  221 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (498)
                      .+..++.|+..|.|-..|+...  +..........++|++++|+.+|+.++.|-.+|.|.+||+..++....+.....  
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a--  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA--  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC--
Confidence            4567899999999999888764  222333445567999999999999999999999999999998776555442211  


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeE
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI  258 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i  258 (498)
                                .++ .|..+.+..++..++++...|.+
T Consensus       174 ----------p~t-~vi~v~~t~~nS~llt~D~~Gsf  199 (1206)
T KOG2079|consen  174 ----------PVT-GVIFVGRTSQNSKLLTSDTGGSF  199 (1206)
T ss_pred             ----------ccc-eEEEEEEeCCCcEEEEccCCCce
Confidence                      122 35555555666678888877863

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.97  E-value=0.0033  Score=38.95  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=28.7

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE  161 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~  161 (498)
                      ...|.+++|+|...+||.|..+|.|.||.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999993

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.84  E-value=0.44  Score=44.95  Aligned_cols=203  Identities=13%  Similarity=0.026  Sum_probs=93.9

Q ss_pred             CCCEEEEEE-CCCeEEEEECCCC---eEEEEEeecC-----CCceeEEEEEeCCCCCeEEEEE--C----CCeEEEEECC
Q 010883          142 DGSLFVAGF-QASQIRIYDVERG---WKIQKDILAK-----SLRWTVTDTSLSPDQRHLVYAS--M----SPIVHIVDVG  206 (498)
Q Consensus       142 dg~~la~~~-~dg~i~vw~~~~~---~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~s--~----d~~i~iwd~~  206 (498)
                      +.++|+..+ ..+.|.|.|+.+.   -.+.+.+...     ..-.....+---|+|+.++++-  .    -|-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777776 6788999999853   2333433321     1112233444458998888753  2    2467888877


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCC
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------------SDDCIYVYDLEAN  266 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--------------------~dg~i~vwd~~~~  266 (498)
                      +.+...........             ..--..+.|.|..+.+++..                    ...++.+||+.+.
T Consensus       166 tf~v~g~We~~~~~-------------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r  232 (461)
T PF05694_consen  166 TFEVKGRWEKDRGP-------------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR  232 (461)
T ss_dssp             T--EEEE--SB-TT-------------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred             cccccceeccCCCC-------------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence            76655544432211             11345677788777777654                    2357999999999


Q ss_pred             eeeEEEeccC--CCeeEEEEe-CCCCCE-EEEeeCCCeEEEEcC-ccccCCCceeEEecc-----------------ccc
Q 010883          267 KLSLRILAHT--SDVNTVCFG-DESGHL-IYSGSDDNLCKVWDR-RCLNVKGKPAGVLMG-----------------HLE  324 (498)
Q Consensus       267 ~~~~~~~~~~--~~v~~~~~~-~~~~~~-l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~-----------------~~~  324 (498)
                      +.++++.--.  ..+..|.|. .|+..+ ++.+.-..+|..|-. ....-..+.+..+..                 -..
T Consensus       233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~  312 (461)
T PF05694_consen  233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP  312 (461)
T ss_dssp             EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred             cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence            9988886332  235567775 122333 333334445554433 211001111111111                 124


Q ss_pred             cEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 010883          325 GITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSS  357 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~  357 (498)
                      -|+.|..|.|.++|..++ .+|.|+.||+.....
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence            578999999999987655 689999999988543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.84  E-value=0.25  Score=42.03  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=38.0

Q ss_pred             CCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883          415 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP  457 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp  457 (498)
                      .+|++.++.-..++|...|..+|+.+.+++-....|++++|--
T Consensus       221 ~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  221 TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            3678888888889999999999999999998888999999953

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.80  E-value=0.0062  Score=37.70  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883          235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       235 ~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      ..|.+++|+|...+||.++.+|.|.++.+ +++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            37999999999999999999999999998 443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.77  E-value=0.34  Score=42.66  Aligned_cols=185  Identities=14%  Similarity=0.096  Sum_probs=111.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEec-cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883          237 IFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG  313 (498)
Q Consensus       237 i~~~~~s~~g~~l~~g~~dg--~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  313 (498)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+++......- ..---..++..  ++.+..-.=.++...+||..    ..
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~----tl  120 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN----TL  120 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc----cc
Confidence            55677877888778877766  699999999987655432 22233445553  34455555578899999997    56


Q ss_pred             ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE
Q 010883          314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA  393 (498)
Q Consensus       314 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (498)
                      +.+..+.-. +.=..++  .|++.|+.......|.++|..+....                               +.+.
T Consensus       121 ~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~-------------------------------~~i~  166 (264)
T PF05096_consen  121 KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV-------------------------------RTIQ  166 (264)
T ss_dssp             EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE-------------------------------EEEE
T ss_pred             eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceE-------------------------------EEEE
Confidence            666666432 3445666  35667777766778999998774422                               1222


Q ss_pred             EEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc------------C---CCCeeeeEEcCC
Q 010883          394 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY------------H---TSPVRDCSWHPS  458 (498)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~l~~sp~  458 (498)
                      ..........+....+-     +|.+.|-.-....|...|..+|+.+..+..            +   ..-.+.+||.|.
T Consensus       167 V~~~g~pv~~LNELE~i-----~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~  241 (264)
T PF05096_consen  167 VTDNGRPVSNLNELEYI-----NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE  241 (264)
T ss_dssp             -EETTEE---EEEEEEE-----TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred             EEECCEECCCcEeEEEE-----cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence            22222222233333332     677777777788899999999998876631            1   245789999988


Q ss_pred             CCeEEEEe
Q 010883          459 QPMLVSSS  466 (498)
Q Consensus       459 ~~~l~s~~  466 (498)
                      ...|...|
T Consensus       242 ~~~l~vTG  249 (264)
T PF05096_consen  242 TDRLFVTG  249 (264)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEe
Confidence            77554444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.69  E-value=0.47  Score=43.16  Aligned_cols=153  Identities=17%  Similarity=0.177  Sum_probs=86.7

Q ss_pred             CCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccc
Q 010883          141 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH  220 (498)
Q Consensus       141 ~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~  220 (498)
                      ..++.|+.|+.+| |.+++.............    ..|..+...|+-+.|++-+ |+.+.++++..-............
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            3578899999998 899998433222222211    1499999999888777665 599999998764433311100000


Q ss_pred             cCccccccCCCCceecEEEEE---EcCCCCEEEEEeCCCeEEEEECCCC-----eeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883          221 DGLDFSAADDGGYSFGIFSLK---FSTDGRELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLI  292 (498)
Q Consensus       221 ~~~~~~~~~~~~h~~~i~~~~---~s~~g~~l~~g~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l  292 (498)
                      .....  .........+...+   -......|+++ ....|.+|.....     +....+ .-...+.+++|.   ++.+
T Consensus        79 ~~~~~--~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i  151 (275)
T PF00780_consen   79 KSRSL--PTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKI  151 (275)
T ss_pred             ccccc--cccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEE
Confidence            00000  00001111344444   11233344444 4458888877653     233444 445788999997   5567


Q ss_pred             EEeeCCCeEEEEcCc
Q 010883          293 YSGSDDNLCKVWDRR  307 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~  307 (498)
                      +.|..+ ...+.|+.
T Consensus       152 ~v~~~~-~f~~idl~  165 (275)
T PF00780_consen  152 CVGTSK-GFYLIDLN  165 (275)
T ss_pred             EEEeCC-ceEEEecC
Confidence            777654 46777876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.67  E-value=0.64  Score=44.47  Aligned_cols=148  Identities=12%  Similarity=0.115  Sum_probs=87.5

Q ss_pred             CCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCC-----CCCeEEEEECCCeEEEEECCCC--c-----
Q 010883          143 GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSG--T-----  209 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~s~d~~i~iwd~~~~--~-----  209 (498)
                      ...+++|+..|.++||+...+. .....+.......+|..+..-+     +...||+ -.-..+.||.+...  .     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            3689999999999999986542 2223333344556888887532     2234444 45667888887221  1     


Q ss_pred             eeccccccccccCccccccCCCCce--ecEEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYS--FGIFSLKFST----D-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~s~----~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      ...+....              .|.  .....+.+-|    . -.+|.+=+.||.+.+++-+.-.....+.. ---...+
T Consensus       116 ~~~L~~~y--------------eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl  180 (418)
T PF14727_consen  116 QYQLELIY--------------EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPL  180 (418)
T ss_pred             EEEEEEEE--------------EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCe
Confidence            10100000              011  1233333333    2 24677789999999999776554444433 2233457


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                      +|+ +..+.|++++.+..+.-|...
T Consensus       181 ~Y~-~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  181 CYC-PRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             EEe-ecCCEEEEecCceeEEEecHH
Confidence            787 566788888888899888754

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.61  E-value=0.05  Score=54.75  Aligned_cols=150  Identities=11%  Similarity=0.114  Sum_probs=84.7

Q ss_pred             eEEEEEeCCCCCeEEEEE------CCC--eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883          178 TVTDTSLSPDQRHLVYAS------MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  249 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l  249 (498)
                      .+...+++|+|+.++...      .|.  .|.+++... .......                +.  ....-.|+|||+.|
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~----------------g~--~~t~PsWspDG~~l  411 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLE----------------GH--SLTRPSWSLDADAV  411 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeec----------------CC--CCCCceECCCCCce
Confidence            578899999999888765      233  455555422 2111111                00  35667899998877


Q ss_pred             EEEeCC------------CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc-ee
Q 010883          250 VAGSSD------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PA  316 (498)
Q Consensus       250 ~~g~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~  316 (498)
                      ++....            +.+.+.++..+....   .....|..+.|+ +++..++... +|.|.+--+.... .+. .+
T Consensus       412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wS-pDG~RiA~i~-~g~v~Va~Vvr~~-~G~~~l  485 (591)
T PRK13616        412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLS-RDGVRAAMII-GGKVYLAVVEQTE-DGQYAL  485 (591)
T ss_pred             EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEEC-CCCCEEEEEE-CCEEEEEEEEeCC-CCceee
Confidence            776432            234444444433322   335679999998 7787776655 4777763222110 222 11


Q ss_pred             ---EEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          317 ---GVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       317 ---~~~~-~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                         ..+. .-...+..+.|.+++.++ ++..++...+|.+.
T Consensus       486 ~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        486 TNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             cccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence               1122 223346889999988854 55555555555544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.55  E-value=0.94  Score=47.23  Aligned_cols=228  Identities=15%  Similarity=0.140  Sum_probs=116.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEEEeccCC--------CeeEEEEeC---------------CCCCEEEEeeCCCeEE
Q 010883          246 GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--------DVNTVCFGD---------------ESGHLIYSGSDDNLCK  302 (498)
Q Consensus       246 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--------~v~~~~~~~---------------~~~~~l~s~s~dg~i~  302 (498)
                      +..|+.++.++.|.-.|..+++.+-++.....        ....+++..               ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            44677788888999999999988777653221        122344431               1244788899999999


Q ss_pred             EEcCccccCCCceeEEeccccccE-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEeCCCCCC
Q 010883          303 VWDRRCLNVKGKPAGVLMGHLEGI-------------TFIDSRG--DGRYLISNGK----------DQAIKLWDIRKMSS  357 (498)
Q Consensus       303 vwd~~~~~~~~~~~~~~~~~~~~v-------------~~l~~~~--~~~~l~s~~~----------dg~i~iwd~~~~~~  357 (498)
                      -.|.+    +++.+..+.. .+.|             ..+.-.|  .+..+++|+.          +|.|+-+|.++++.
T Consensus       274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            99987    6776655432 1111             0111112  1335555542          68899999999776


Q ss_pred             ccccccCcccccccceeecCCcCcccccCCCCc--eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ--SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                      .-...........      ....+.........  ....++.......+....-.+.+-...+.....-..+.|.-.|+.
T Consensus       349 ~W~~~~g~p~~~~------~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~  422 (764)
T TIGR03074       349 VWAWDPGNPDPTA------PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT  422 (764)
T ss_pred             eeEEecCCCCccc------CCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence            5443221100000      00000000000000  111122111111110000011110011101111235678889999


Q ss_pred             CCcEEEEeccCCCCeee---------eEEcC-CCC---eEEEEeCCCcEEEecCCCCCCCCC
Q 010883          436 SGEQVAALKYHTSPVRD---------CSWHP-SQP---MLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       436 ~~~~~~~~~~h~~~v~~---------l~~sp-~~~---~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      +|+....++.....+++         +.+.. +|+   .++.++.+|.+++.|-.+++...+
T Consensus       423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            99998887642211111         12222 553   889999999999999988765543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.52  E-value=0.27  Score=47.75  Aligned_cols=115  Identities=13%  Similarity=0.125  Sum_probs=71.5

Q ss_pred             cEEEEEEcCC----CCEEEEEeCCCeEEEEECC-----CCeeeEEEecc---CC--CeeEEEEeCCCCCEEEEeeCCCeE
Q 010883          236 GIFSLKFSTD----GRELVAGSSDDCIYVYDLE-----ANKLSLRILAH---TS--DVNTVCFGDESGHLIYSGSDDNLC  301 (498)
Q Consensus       236 ~i~~~~~s~~----g~~l~~g~~dg~i~vwd~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~~l~s~s~dg~i  301 (498)
                      .|..+.|.|-    -..|++.-....|.||.+.     +++.+.....+   .-  -...+.|+ |....|++-.....-
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS  136 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence            5889999984    3356666677889999875     23333222211   11  22457787 566666666555555


Q ss_pred             EEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010883          302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK  354 (498)
Q Consensus       302 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~  354 (498)
                      .++++++.  .......+ ...+-|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus       137 V~~sV~~d--~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  137 VLPSVHCD--SSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EeeeeeeC--CceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            56676632  22233333 45678999999999998876543 33468888554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.43  E-value=1.3  Score=45.72  Aligned_cols=91  Identities=18%  Similarity=0.294  Sum_probs=57.0

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC----------CceeccccccccccCccccccCCCCceecEEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS----------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSL  240 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  240 (498)
                      ........|..+.++|+|++|+..|..|. .|..+..          ++.............+ +    ...+...|..+
T Consensus        79 ~~~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~----~~~~~~~i~qv  152 (717)
T PF10168_consen   79 PSNPPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-F----TSNSSLEIKQV  152 (717)
T ss_pred             cCCCCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhh-c----cCCCCceEEEE
Confidence            33445568999999999999999988664 4444321          1110000000000000 0    11234589999


Q ss_pred             EEcCC---CCEEEEEeCCCeEEEEECCCCe
Q 010883          241 KFSTD---GRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       241 ~~s~~---g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      .|+|.   +.+|++-+.|+.+++||+....
T Consensus       153 ~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  153 RWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            99995   5799999999999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=96.41  E-value=0.2  Score=50.65  Aligned_cols=189  Identities=13%  Similarity=0.065  Sum_probs=93.2

Q ss_pred             CCCCEEEEEECCC------eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-----CeEEEEECCCCc
Q 010883          141 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT  209 (498)
Q Consensus       141 ~dg~~la~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~~~~~  209 (498)
                      .++.+++.|+.++      .+..||..++.- ...............+.  -+++..+.|+.+     ..+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            4566777776542      477888877632 22111111111222222  267777788765     357788888776


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEEEec-cCCCeeEE
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILA-HTSDVNTV  282 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~~-~~~~v~~~  282 (498)
                      .......+...          .+|     +++. -+++..+.|+.+      ..+..||..+++....-.. ....-.++
T Consensus       370 W~~~~~lp~~r----------~~~-----~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~  433 (534)
T PHA03098        370 WREEPPLIFPR----------YNP-----CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA  433 (534)
T ss_pred             eeeCCCcCcCC----------ccc-----eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE
Confidence            55433322111          011     1111 256777777632      4588999887665321110 01111223


Q ss_pred             EEeCCCCCEEEEeeCC--------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 010883          283 CFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKL  349 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~i  349 (498)
                      +.  .++.+++.|+.+        ..+.+||....  ....+..+.........+.+  +++.++.|+.+     ..+.+
T Consensus       434 ~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~  507 (534)
T PHA03098        434 IY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEV  507 (534)
T ss_pred             EE--ECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEE
Confidence            33  345666777643        23788887622  11111111111111122222  56677777654     46778


Q ss_pred             EeCCC
Q 010883          350 WDIRK  354 (498)
Q Consensus       350 wd~~~  354 (498)
                      ||..+
T Consensus       508 yd~~~  512 (534)
T PHA03098        508 YDDKT  512 (534)
T ss_pred             EeCCC
Confidence            88766

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.39  E-value=0.75  Score=41.96  Aligned_cols=192  Identities=14%  Similarity=0.102  Sum_probs=87.2

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC-CCcee
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTME  211 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~-~~~~~  211 (498)
                      ..+++.|..+ ..+++| ..+ +.+...+.|....+........+....+....++..++ ++..|.|  |... .|+.-
T Consensus        63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCe
Confidence            4677888643 344544 455 44555555654444332222222333344334443333 3444443  3332 23211


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCE
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL  291 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  291 (498)
                      ... ..              +-.+.+..+.-++||++++++.......-||-........-+.....|..|.|. +++.+
T Consensus       137 ~~~-~~--------------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~l  200 (302)
T PF14870_consen  137 QAV-VS--------------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNL  200 (302)
T ss_dssp             EEE-E---------------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-E
T ss_pred             eEc-cc--------------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCE
Confidence            111 11              112368888999999988887665555677765433333333456889999998 66666


Q ss_pred             EEEeeCCCeEEEEcCc-cccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883          292 IYSGSDDNLCKVWDRR-CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK  348 (498)
Q Consensus       292 l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~  348 (498)
                      .+.+ ..|.|++=+.. ....-.+++.....-.-.+..++|.+++...++|+. |.+.
T Consensus       201 w~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~  256 (302)
T PF14870_consen  201 WMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL  256 (302)
T ss_dssp             EEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE
T ss_pred             EEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE
Confidence            5544 88888887721 000000111111122234789999998777776654 4443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.9  Score=42.77  Aligned_cols=140  Identities=12%  Similarity=0.048  Sum_probs=84.1

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883          137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV  216 (498)
Q Consensus       137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~  216 (498)
                      +-|. |.+.++.+...|.+.=|-+.....-.........+++|.++.||+|.+.||+--.+.+|.+++....+.......
T Consensus        28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence            3344 333333333445555565543211111122234456999999999999999999999999999855443332222


Q ss_pred             cccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeCCCCCEE
Q 010883          217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLI  292 (498)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l  292 (498)
                      ....            .+..|....|+.+ ..+|..+..| +-+|-....+ .++....|...|+-..|+ ++.+.+
T Consensus       107 ~ck~------------k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~  168 (657)
T KOG2377|consen  107 ECKT------------KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVI  168 (657)
T ss_pred             Hhcc------------CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceE
Confidence            2111            1225888999865 5677777666 6666554332 334455788889999998 444433

>PRK10115 protease 2; Provisional

Probab=96.36  E-value=1.6  Score=45.38  Aligned_cols=196  Identities=12%  Similarity=0.048  Sum_probs=100.1

Q ss_pred             CceEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC------CeE
Q 010883          132 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV  200 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d------~~i  200 (498)
                      -.+..+.+||||++||.+..     ...|++.|+.+|..+...+  ..   .-..++|++|++.|+....+      ..|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            44677899999999987643     2358899998874332221  11   11458999999877776542      367


Q ss_pred             EEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECC--CCeeeEEEe
Q 010883          201 HIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLE--ANKLSLRIL  273 (498)
Q Consensus       201 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~--~~~~~~~~~  273 (498)
                      ..+++.++.  ...+..-..              .... ..+..+.++++++..+.   ++.+.+++..  .+.... +.
T Consensus       202 ~~h~lgt~~~~d~lv~~e~~--------------~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~-~~  265 (686)
T PRK10115        202 WRHTIGTPASQDELVYEEKD--------------DTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV-FL  265 (686)
T ss_pred             EEEECCCChhHCeEEEeeCC--------------CCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE-EE
Confidence            888888773  222222110              0011 23344558887665543   3568888843  333222 22


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCC-CeEEEEcCccccCCCceeEEeccc-c-ccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGH-L-EGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~-~-~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      .+...+..-... ..+.+++....+ ...+|..+...  .......+..+ . ..|..+.+.. +.++++...++.-+++
T Consensus       266 ~~~~~~~~~~~~-~~~~ly~~tn~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~  341 (686)
T PRK10115        266 PRRKDHEYSLDH-YQHRFYLRSNRHGKNFGLYRTRVR--DEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLR  341 (686)
T ss_pred             ECCCCCEEEEEe-CCCEEEEEEcCCCCCceEEEecCC--CcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEE
Confidence            333222221112 223333333222 23334333211  11122333334 2 3577777763 3455566667765555


Q ss_pred             eC
Q 010883          351 DI  352 (498)
Q Consensus       351 d~  352 (498)
                      -+
T Consensus       342 ~~  343 (686)
T PRK10115        342 QI  343 (686)
T ss_pred             EE
Confidence            44

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.15  E-value=0.85  Score=40.21  Aligned_cols=102  Identities=19%  Similarity=0.283  Sum_probs=70.2

Q ss_pred             EEEEEEcCCC-CEEEEEeCCCe-EEEEECCCCeeeEEEeccCCC--eeEEEEeCCCCCEEEEeeCC-----CeEEEEcCc
Q 010883          237 IFSLKFSTDG-RELVAGSSDDC-IYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDD-----NLCKVWDRR  307 (498)
Q Consensus       237 i~~~~~s~~g-~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~  307 (498)
                      ...|+|+|.. +-++.+-.-|+ ..++|....+....+...++.  .-.=.|+ +++.+|+..-.|     |.|-|||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecc
Confidence            4457788744 44555555554 568898887766555432221  1123676 889999887654     789999987


Q ss_pred             cccCCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883          308 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                         .....+..+..|.-....+.+.+||+.++.+.
T Consensus       149 ---~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         149 ---EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ---cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence               24456677888888888999999999988764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.07  E-value=0.91  Score=43.47  Aligned_cols=164  Identities=12%  Similarity=0.116  Sum_probs=94.0

Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-----DGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      .+...|++|+..|.++||+..........+..-..-..+|..+..-.     +...||+ =.-..+.+|.+........ 
T Consensus        35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~-  112 (418)
T PF14727_consen   35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE-  112 (418)
T ss_pred             CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc-
Confidence            34568999999999999998633222222222223457888887532     2234444 4456788888743211100 


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC-CcEEEEEecCCeEEEEECCCCcEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQV  440 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~  440 (498)
                                              +...-.+.....|.........+..+.-... ..+|.+-+-||.+.+|+-+.-...
T Consensus       113 ------------------------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~  168 (418)
T PF14727_consen  113 ------------------------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS  168 (418)
T ss_pred             ------------------------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE
Confidence                                    0001122333333333333333333322223 467888899999999996654444


Q ss_pred             EEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          441 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       441 ~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ..+.. ---...+++++.-..|++++.+..|.-|.+.
T Consensus       169 ~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  169 RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence            44432 2222346788888889999999899988874

>PRK10115 protease 2; Provisional

Probab=95.99  E-value=2.4  Score=44.07  Aligned_cols=113  Identities=11%  Similarity=0.070  Sum_probs=69.0

Q ss_pred             eeEEEEEeCCCCCeEEEEECC-----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883          177 WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  251 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~  251 (498)
                      ..+..+.|+||+++|+.+...     -.|++.|+.++...... +    ..             .-..++|.+|++.|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i----~~-------------~~~~~~w~~D~~~~~y  188 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L----DN-------------VEPSFVWANDSWTFYY  188 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c----cC-------------cceEEEEeeCCCEEEE
Confidence            468889999999999886542     26889999877521110 0    00             1145899999987766


Q ss_pred             EeCC------CeEEEEECCCC--eeeEEEeccCCCeeEEEEeCCCCCEEEEeeC---CCeEEEEcCc
Q 010883          252 GSSD------DCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRR  307 (498)
Q Consensus       252 g~~d------g~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~vwd~~  307 (498)
                      ...+      ..|+.+++.++  +....+........-..+.+.++.+++..+.   ++.+.+++..
T Consensus       189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            6442      36888999887  3333333323333322333346666555443   3568888854

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.88  E-value=0.72  Score=44.95  Aligned_cols=160  Identities=13%  Similarity=0.142  Sum_probs=88.2

Q ss_pred             ccCCCCceEEEEEcCCCCE-EEEEE--CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC----CCeEEEEECCCe
Q 010883          127 VDQTTSRAYVSQFSADGSL-FVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRHLVYASMSPI  199 (498)
Q Consensus       127 l~~h~~~v~~~~~s~dg~~-la~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~s~d~~  199 (498)
                      |.+.-.+|..++|. ||+. +.+.-  .+|.+++=|..   .+       +.-..|..+.|.|-    ...|++......
T Consensus        15 L~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---vi-------GqFEhV~GlsW~P~~~~~~paLLAVQHkkh   83 (671)
T PF15390_consen   15 LHQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VI-------GQFEHVHGLSWAPPCTADTPALLAVQHKKH   83 (671)
T ss_pred             HHhhhccccceEec-CCCEEEEEeeeeeCCccccCCcc---Ee-------eccceeeeeeecCcccCCCCceEEEeccce
Confidence            44445678889997 5544 44432  24444332211   11       11125899999994    335556666789


Q ss_pred             EEEEECCCCceec--cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--eEEEecc
Q 010883          200 VHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL--SLRILAH  275 (498)
Q Consensus       200 i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~  275 (498)
                      |.||.+.......  ........-.-.|+.        -...+.|+|....|++-.....-.++++.....  ...+ ..
T Consensus        84 VtVWqL~~s~~e~~K~l~sQtcEi~e~~pv--------LpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~  154 (671)
T PF15390_consen   84 VTVWQLCPSTTERNKLLMSQTCEIREPFPV--------LPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KT  154 (671)
T ss_pred             EEEEEeccCccccccceeeeeeeccCCccc--------CCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cC
Confidence            9999986322111  111000000001111        123578999998888776665445566654332  2223 56


Q ss_pred             CCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCc
Q 010883          276 TSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRR  307 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~  307 (498)
                      .+.|.|.+|. .+|+.|+++ +..=.-++||-.
T Consensus       155 ~G~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  155 SGLIHCACWT-KDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceEEEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence            6889999998 566655544 444456789853

>PHA03098 kelch-like protein; Provisional

Probab=95.86  E-value=0.48  Score=47.87  Aligned_cols=103  Identities=10%  Similarity=0.115  Sum_probs=50.2

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCCeeeEEEeccC--CCeeEEEEeCCCCCEEEEeeCC-----CeEEEEcCccccC
Q 010883          245 DGRELVAGSSDD------CIYVYDLEANKLSLRILAHT--SDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNV  311 (498)
Q Consensus       245 ~g~~l~~g~~dg------~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~  311 (498)
                      ++..++.|+.++      .+..||..+++.. .+....  ..-.+++.  .++.+++.|+.+     ..+..||....  
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~--  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES--  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence            556667776542      5788898877653 222111  11122222  356677778765     34677887522  


Q ss_pred             CCceeEEeccccccEEEEEEcCCCCEEEEEeCC------CcEEEEeCCC
Q 010883          312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRK  354 (498)
Q Consensus       312 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~~~  354 (498)
                      .......+....... +++ .-+++..+.|+.+      ..+..||+.+
T Consensus       369 ~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        369 KWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             ceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCC
Confidence            111111111111111 111 2256666767632      3467777665

>PRK13684 Ycf48-like protein; Provisional

Probab=95.68  E-value=1.5  Score=41.19  Aligned_cols=155  Identities=12%  Similarity=0.104  Sum_probs=87.6

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEE-EECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRI-YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~v-w~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ...++++.+.|++.+++++. .|.+.. ++ ..+.......  ......++++.+.|+++.++++ ..|.+.+=..+.+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence            56789999999988777664 554432 22 2222232221  2334479999999999877665 45766432344443


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe---ccCCCeeEEEEeC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGD  286 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~  286 (498)
                      .-.....+..            .-...+.++.+.+++..++ ++.+|.|. .....++.-....   .-......+.|. 
T Consensus       247 sW~~~~~~~~------------~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~-  311 (334)
T PRK13684        247 SWSKPIIPEI------------TNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL-  311 (334)
T ss_pred             ccccccCCcc------------ccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe-
Confidence            3221111100            0112578899999887554 45677555 3444444333332   222357778886 


Q ss_pred             CCCCEEEEeeCCCeEEEEcC
Q 010883          287 ESGHLIYSGSDDNLCKVWDR  306 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~  306 (498)
                      .++.. +..+..|.|..|+-
T Consensus       312 ~~~~~-~~~G~~G~il~~~~  330 (334)
T PRK13684        312 DPEKG-FVLGQRGVLLRYVG  330 (334)
T ss_pred             CCCce-EEECCCceEEEecC
Confidence            44444 45566788887764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.67  E-value=1.5  Score=39.20  Aligned_cols=148  Identities=12%  Similarity=0.042  Sum_probs=88.2

Q ss_pred             eEEEEEeCCCCCeEEEEE---CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          178 TVTDTSLSPDQRHLVYAS---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      .+.+.+++++++.++...   ....+.++.......... .-                  ..+..-.|++++...++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g------------------~~l~~PS~d~~g~~W~v~~~   85 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TG------------------GSLTRPSWDPDGWVWTVDDG   85 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cC------------------CccccccccCCCCEEEEEcC
Confidence            688999999999888766   334566665443322111 10                  14667789999877666666


Q ss_pred             CCeEEEEE-CCCCeee-EEEec--cCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCC-----CceeEEeccc
Q 010883          255 DDCIYVYD-LEANKLS-LRILA--HTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVK-----GKPAGVLMGH  322 (498)
Q Consensus       255 dg~i~vwd-~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~-----~~~~~~~~~~  322 (498)
                      +...+++. ..++... ..+..  -...|..+.++ +++..++...   .++.|.+--+......     ..+.......
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS-pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~  164 (253)
T PF10647_consen   86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVS-PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL  164 (253)
T ss_pred             CCceEEEEecCCCcceeEEecccccCCceEEEEEC-CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence            66666663 3333322 12221  11289999998 7777666555   3467776654311101     1222233334


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCC
Q 010883          323 LEGITFIDSRGDGRYLISNGKDQ  345 (498)
Q Consensus       323 ~~~v~~l~~~~~~~~l~s~~~dg  345 (498)
                      ...++.+.|.+++.+++.+...+
T Consensus       165 ~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  165 LSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             cCcceeeeecCCCEEEEEeCCCC
Confidence            56889999999998777665544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.63  E-value=1.5  Score=38.83  Aligned_cols=183  Identities=17%  Similarity=0.133  Sum_probs=105.4

Q ss_pred             CCceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg--~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      ..-...+.|..+|.++-+.+.-|  .|+.+|+.+++........... ...|+-+    +++.....=.++...+||..+
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEETTT
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEcccc
Confidence            33455678878888888887766  6999999999766554443322 2223222    333333444688999999988


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-----CCCeeEE
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTV  282 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~  282 (498)
                      -+....+....                 .=..++  .|++.|+.......|+++|..+-+...++.-.     -..++-+
T Consensus       120 l~~~~~~~y~~-----------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  120 LKKIGTFPYPG-----------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             TEEEEEEE-SS-----------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred             ceEEEEEecCC-----------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence            76655444321                 223344  46777777777778999999887776665422     1345667


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec---------------cccccEEEEEEcCCCCEEEEEe
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---------------GHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      .|.  ++.+.|=.=....|...|..    ++.....+.               ....-.+.|++.|....|...+
T Consensus       181 E~i--~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  181 EYI--NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEE--TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEE--cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            774  45444444444556666665    444443321               0134578999998776665544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02790 Kelch-like protein; Provisional

Probab=95.49  E-value=1.3  Score=44.00  Aligned_cols=186  Identities=9%  Similarity=0.003  Sum_probs=91.8

Q ss_pred             CCCCEEEEEECCC-----eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC--CeEEEEECCCCceecc
Q 010883          141 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESL  213 (498)
Q Consensus       141 ~dg~~la~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d--~~i~iwd~~~~~~~~~  213 (498)
                      .++.++++|+.++     .+..||..++.-.. .............+  .-++...+.|+.+  ..+..||..+++....
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            3456667777543     46778887763222 11111111111122  2367777777754  3577888776655444


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCC
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG  289 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg---~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~  289 (498)
                      ..++....              ....+.  -+|+..+.|+.++   .+..||..+++....-. .....-.+++.  -++
T Consensus       347 ~~l~~~r~--------------~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~  408 (480)
T PHA02790        347 PSLLKPRC--------------NPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGR  408 (480)
T ss_pred             CCCCCCCc--------------ccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECC
Confidence            33322110              111122  2677777777553   47788888766533111 11111112222  345


Q ss_pred             CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 010883          290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK  354 (498)
Q Consensus       290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~  354 (498)
                      .+.+.|   |.+.+||....  ....+..+.........+.+  +++..+.|+.+     ..+..||..+
T Consensus       409 ~IYv~G---G~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        409 RLFLVG---RNAEFYCESSN--TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             EEEEEC---CceEEecCCCC--cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence            666666   35778887522  22222222221222222222  66777788754     3577777765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.42  E-value=0.41  Score=47.84  Aligned_cols=180  Identities=12%  Similarity=0.048  Sum_probs=90.0

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG  232 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (498)
                      -.|+||+.. |..+.+..-.++   .+..+.|+.+..+ ++...+|++++|++........-...+.             
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~---~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge~ie~~svg~e~-------------  125 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHG---ELIGMGWSDDEEL-ICVQKDGTVHVYGLLGEFIESNSVGFES-------------  125 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCC---CeeeecccCCceE-EEEeccceEEEeecchhhhccccccccc-------------
Confidence            458888876 434444332222   7889999977665 4567899999999865443221110010             


Q ss_pred             ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec---cCCCeeEEEEeCCCCCEEEEeeCCCeE--EEEcCc
Q 010883          233 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDNLC--KVWDRR  307 (498)
Q Consensus       233 h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~s~dg~i--~vwd~~  307 (498)
                      ....|..+.|..+|  +++-..+|.+.+-+-.......++..   ..-+-.|-+..++..+....-.-+-.|  .++-..
T Consensus       126 ~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~  203 (829)
T KOG2280|consen  126 QMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE  203 (829)
T ss_pred             ccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence            11135555555566  44444456555543222222222222   111212332222221111111111000  111111


Q ss_pred             cccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          308 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                         ........+....+.+..+.+||+.++|+--..+|.|.+-+....
T Consensus       204 ---~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  204 ---ESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             ---cccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence               011122222222466788999999999999999999988877653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.41  E-value=2.2  Score=44.12  Aligned_cols=77  Identities=14%  Similarity=0.187  Sum_probs=54.2

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCC----------CeE--EEE------EeecCCCceeEEEEEeCCC---CC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GWK--IQK------DILAKSLRWTVTDTSLSPD---QR  189 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~----------~~~--~~~------~~~~~~~~~~v~~~~~sp~---~~  189 (498)
                      .-.|..+.+||+|++||..|..|.+.+ .+..          |..  ..+      ..........|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            458999999999999999988764433 3321          111  111      1122344568999999996   57


Q ss_pred             eEEEEECCCeEEEEECCCC
Q 010883          190 HLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~  208 (498)
                      .|++-..|+++++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            8889899999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=1.9  Score=38.36  Aligned_cols=156  Identities=18%  Similarity=0.189  Sum_probs=93.3

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      -+.++.++.  ++...+..+.-++|.|+.+.........-..              .+--.++..  .|++..++..+.-
T Consensus        88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--------------~gyaygv~v--sGn~aYVadlddg  149 (370)
T COG5276          88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNT--------------DGYAYGVYV--SGNYAYVADLDDG  149 (370)
T ss_pred             hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccC--------------CceEEEEEe--cCCEEEEeeccCc
Confidence            466667754  5556666777799999987654333221110              012334444  5888888886666


Q ss_pred             EEEEECCCCe---eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883          258 IYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD  334 (498)
Q Consensus       258 i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  334 (498)
                      +.+.|+.+..   +..++......-..++.+   +++-+.+..|+-+.+-|+.... ....+... .....+.++..+++
T Consensus       150 fLivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~-sPvli~~~-n~g~g~~sv~vsdn  224 (370)
T COG5276         150 FLIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH-SPVLIGSY-NTGPGTYSVSVSDN  224 (370)
T ss_pred             EEEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC-CCeEEEEE-ecCCceEEEEecCC
Confidence            7888887654   333444444455677776   6788888899999999996332 11222221 12236788888876


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          335 GRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       335 ~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      -.+++..  +.-+.+-|....+.+
T Consensus       225 r~y~vvy--~egvlivd~s~~ssp  246 (370)
T COG5276         225 RAYLVVY--DEGVLIVDVSGPSSP  246 (370)
T ss_pred             eeEEEEc--ccceEEEecCCCCCc
Confidence            5555544  334677777665433

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.07  E-value=1.8  Score=36.41  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=93.3

Q ss_pred             CCCEEEEEeCC--CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc
Q 010883          245 DGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH  322 (498)
Q Consensus       245 ~g~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  322 (498)
                      +|.++.+.+.-  ..|++||+.+++.+....-....+..=-...-.+.+..-.-.+|.-..+|.+    ..+.+..+.- 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~----t~~~lg~~~y-  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD----TLEELGRFSY-  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChH----Hhhhhccccc-
Confidence            45566665543  4699999999987655432211111111110112222233457788888887    4444443331 


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883          323 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR  402 (498)
Q Consensus       323 ~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (498)
                      .+.=+.++.  |+..|+.+....+++.-|..+......                              ...+..+.. ..
T Consensus       130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~------------------------------v~VT~~g~p-v~  176 (262)
T COG3823         130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT------------------------------VQVTDDGVP-VS  176 (262)
T ss_pred             CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcce------------------------------EEEEECCee-cc
Confidence            223344443  455566666666777777665432211                              111112111 11


Q ss_pred             EEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec------------cCCCCeeeeEEcCCCC-eEEEE
Q 010883          403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------------YHTSPVRDCSWHPSQP-MLVSS  465 (498)
Q Consensus       403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------------~h~~~v~~l~~sp~~~-~l~s~  465 (498)
                      .+....|-     ||.+.|-.-.+..|...|..+|+.+.-+.            .|..-.+.+++.|++. +++||
T Consensus       177 ~LNELE~V-----dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         177 KLNELEWV-----DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccceeee-----ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            11111111     56666666666777777777887765543            2445678899999884 66665

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.00  E-value=0.6  Score=46.85  Aligned_cols=122  Identities=17%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC--CCCCeEEEEECCCeEEEEECCCCcee
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~s~d~~i~iwd~~~~~~~  211 (498)
                      ..-+.-|.-++..++-+....+.|||...+........  ...+.|.++.|.  |+++.+++.+..+.|.++.-......
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            34444444555555555556799999998753333222  335589999985  68999999999999999864311100


Q ss_pred             ccccccccccCccccccCCCCce-ecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 010883          212 SLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRELVAGSSDDCIYVYDLE  264 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~  264 (498)
                      ...........+...     .|+ .+|.+..|.++|.. ++|+ ++.+.|+|-.
T Consensus       110 ~~~p~w~~i~~i~i~-----~~T~h~Igds~Wl~~G~L-vV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDIS-----SHTPHPIGDSIWLKDGTL-VVGS-GNQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEee-----cCCCCCccceeEecCCeE-EEEe-CCEEEEECCC
Confidence            000000000000000     122 37899999999964 4443 3568888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.90  E-value=1.7  Score=41.36  Aligned_cols=155  Identities=15%  Similarity=0.199  Sum_probs=76.0

Q ss_pred             CceEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC
Q 010883          132 SRAYVSQFSADGSLFVAGF-----------QAS-QIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS  197 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~-----------~dg-~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d  197 (498)
                      .....++|.++|+++++-.           ..+ .|.+++-.+  |..-......... .....+++.+++ ++ +++..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G-ly-V~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG-VY-VATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC-EE-EeCCC
Confidence            3456789999999887753           223 677776433  2211111222222 246889999988 44 44444


Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-------------------CeE
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------------------DCI  258 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-------------------g~i  258 (498)
                      ...++.+........ ........++.  .. ...+......++|.|||.+.++-+..                   |.|
T Consensus        91 ~i~~~~d~~gdg~ad-~~~~~l~~~~~--~~-~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        91 DILFLRDKDGDDKAD-GEREVLLSGFG--GQ-INNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             eEEEEeCCCCCCCCC-CccEEEEEccC--CC-CCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence            333343543211000 00000000100  00 00012357789999999866654421                   345


Q ss_pred             EEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe
Q 010883          259 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG  295 (498)
Q Consensus       259 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  295 (498)
                      .-++..+++.. .+...-.....++|+ ++++++++-
T Consensus       167 ~r~~pdg~~~e-~~a~G~rnp~Gl~~d-~~G~l~~td  201 (367)
T TIGR02604       167 FRYNPDGGKLR-VVAHGFQNPYGHSVD-SWGDVFFCD  201 (367)
T ss_pred             EEEecCCCeEE-EEecCcCCCccceEC-CCCCEEEEc
Confidence            55565554432 222222334678886 567776553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.89  E-value=0.49  Score=49.58  Aligned_cols=150  Identities=9%  Similarity=0.003  Sum_probs=91.4

Q ss_pred             eEEEEEeCCCCCeEEEEE--CCCeEEEEECCCCceecccccc---ccccCccccccCCCCceecEEEEEEcCCCC-EEEE
Q 010883          178 TVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVT---EIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVA  251 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s--~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~  251 (498)
                      +|..+...+|+...++..  .+-.|..||+.+-.........   ......        ....-..++.|+|.-. ..++
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~--------ek~vf~~~~~wnP~vp~n~av  173 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF--------EKPVFQLKNVWNPLVPLNSAV  173 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh--------ccccccccccccCCccchhhh
Confidence            566677778876655543  3347889998754322211100   000000        0112466788988432 3566


Q ss_pred             EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc----ccccEE
Q 010883          252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGIT  327 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~v~  327 (498)
                      ...|+.|++..+........-.......++++|+ +.|..++.|-..|++.-|...     ......+.+    ....|.
T Consensus       174 ~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl  247 (1405)
T KOG3630|consen  174 DLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVL  247 (1405)
T ss_pred             hccccchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCccee
Confidence            7788999988776543332223456678999998 789999999999999988763     222222221    136789


Q ss_pred             EEEEcCCCCEEEEE
Q 010883          328 FIDSRGDGRYLISN  341 (498)
Q Consensus       328 ~l~~~~~~~~l~s~  341 (498)
                      +|.|-....++++-
T Consensus       248 ~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  248 SVTWLSTQEFLVVY  261 (1405)
T ss_pred             EEEEecceeEEEEe
Confidence            99998766666543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.86  E-value=0.17  Score=30.34  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=27.0

Q ss_pred             CceEEEEEcCCC---CEEEEEECCCeEEEEECCCC
Q 010883          132 SRAYVSQFSADG---SLFVAGFQASQIRIYDVERG  163 (498)
Q Consensus       132 ~~v~~~~~s~dg---~~la~~~~dg~i~vw~~~~~  163 (498)
                      ++|.+++|||+.   .+||.+-.-|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58998888899999999864

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=94.85  E-value=2.5  Score=41.97  Aligned_cols=103  Identities=7%  Similarity=-0.085  Sum_probs=49.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCC--CeEEEEcCccccCCCce
Q 010883          245 DGRELVAGSSD-----DCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKP  315 (498)
Q Consensus       245 ~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~  315 (498)
                      ++..+++|+.+     ..+..||..+++....-.  ..... .+++.  -++.+.+.|+.+  ..+..||....  ....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~~n--~W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHGDA--AWVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECCCC--eEEE
Confidence            45556777654     257788888766432211  11111 22222  356777777754  35777876411  1122


Q ss_pred             eEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCC
Q 010883          316 AGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRK  354 (498)
Q Consensus       316 ~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~  354 (498)
                      +..+.........+  .-+|+..+.|+.++   .+..||.++
T Consensus       346 ~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        346 MPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCC
Confidence            22222111111122  22567777777553   355666654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.77  E-value=2.1  Score=43.69  Aligned_cols=163  Identities=12%  Similarity=0.122  Sum_probs=92.2

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEE------Eee-------------cCCCceeEEEEEeCC--CCCeEEEEECCCeEE
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQK------DIL-------------AKSLRWTVTDTSLSP--DQRHLVYASMSPIVH  201 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~------~~~-------------~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~  201 (498)
                      +++|+++. .+.|.||+.+.-.....      ...             .......|+.|....  +...|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            67777775 67899999864322110      000             000112466665544  456888999999999


Q ss_pred             EEECCCCc--eecc-ccccccccCccccccCCCCceecEEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--eeeE-EEe
Q 010883          202 IVDVGSGT--MESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEAN--KLSL-RIL  273 (498)
Q Consensus       202 iwd~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~g~~l~~g~~dg~i~vwd~~~~--~~~~-~~~  273 (498)
                      +|.+++=.  .... .............+.-.......++.++++  ...++||+++....|.||-....  +... .-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            99764210  0000 000000000000000000122378899998  78888999988888888755432  1111 111


Q ss_pred             ccCCCeeEEEEeCCC----CC-EEEEeeCCCeEEEEcC
Q 010883          274 AHTSDVNTVCFGDES----GH-LIYSGSDDNLCKVWDR  306 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~----~~-~l~s~s~dg~i~vwd~  306 (498)
                      .|...|.+|+|.+.+    |. .+++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            356678999997443    22 7888999999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.73  E-value=1.8  Score=43.65  Aligned_cols=111  Identities=21%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             EEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEc--CCCCEEEEEeCCC
Q 010883          179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDD  256 (498)
Q Consensus       179 v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~g~~l~~g~~dg  256 (498)
                      ++-+.-+.-++.-++-+....+.|||...+.........               ..+.|.++.|.  |+|+.+++.+..+
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~---------------~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS---------------EDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec---------------CCCceeeceeeecCCCCEEEEEEcCc
Confidence            334444454554445444568999999988744333321               12378899886  5888888888888


Q ss_pred             eEEEEECC---------CCeeeEEE--eccC-CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          257 CIYVYDLE---------ANKLSLRI--LAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       257 ~i~vwd~~---------~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                      .|.+|--.         +...+..+  ..|+ .+|.+..|. .+|.+++.+  .+.+.|+|-.
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-KDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEe-cCCeEEEEe--CCEEEEECCC
Confidence            99988431         11222322  2344 578999997 667655544  3578888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.55  E-value=0.78  Score=43.16  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883          235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN  310 (498)
Q Consensus       235 ~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~  310 (498)
                      ++|.++.|++|.+.||+--.+.+|.+++....+....+    ......|....|+ .+ .-++.-+..| +-+|...   
T Consensus        67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~---  140 (657)
T KOG2377|consen   67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVL---  140 (657)
T ss_pred             CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEc---
Confidence            38999999999999999999999999998544432222    1233458889997 33 4444444433 4445433   


Q ss_pred             CCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883          311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      .....++..+.|...|.-..|.++.+.++-++
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            13345556667888888888888877654433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.53  E-value=7.2  Score=40.91  Aligned_cols=124  Identities=14%  Similarity=0.112  Sum_probs=70.2

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-----eEEEEEeC----------------CCCCeEEEEECCCeEE
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLS----------------PDQRHLVYASMSPIVH  201 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~~~~s----------------p~~~~l~~~s~d~~i~  201 (498)
                      +..|+.++.++.|.-.|..+|+.+-+.........     ....+++-                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55677777888899999999877666433221110     01112221                1345788888999999


Q ss_pred             EEECCCCceecccccccc---ccCccccccCCCCceecEEEEEEcC--CCCEEEEEeC----------CCeEEEEECCCC
Q 010883          202 IVDVGSGTMESLANVTEI---HDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSS----------DDCIYVYDLEAN  266 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~----------dg~i~vwd~~~~  266 (498)
                      -.|.++|+....+.....   ..++..       ....-..+.-.|  .+..+++|+.          +|.|+-+|.+++
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~-------~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG  346 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGT-------TPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG  346 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCc-------CCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence            999999987654332110   000000       000000011111  1335666643          688999999999


Q ss_pred             eeeEEEe
Q 010883          267 KLSLRIL  273 (498)
Q Consensus       267 ~~~~~~~  273 (498)
                      +.+-++.
T Consensus       347 kl~W~~~  353 (764)
T TIGR03074       347 ALVWAWD  353 (764)
T ss_pred             cEeeEEe
Confidence            9887765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.38  E-value=0.14  Score=30.68  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=27.1

Q ss_pred             CCeeEEEEeCCCC--CEEEEeeCCCeEEEEcCc
Q 010883          277 SDVNTVCFGDESG--HLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       277 ~~v~~~~~~~~~~--~~l~s~s~dg~i~vwd~~  307 (498)
                      +.|.++.|+|..+  .+|+.+-..|.|.++|++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            4689999996666  799999999999999998

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.38  E-value=1  Score=43.03  Aligned_cols=144  Identities=15%  Similarity=0.230  Sum_probs=86.2

Q ss_pred             CCCeEEE-EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-------EEEEEeCCCeE
Q 010883          187 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI  258 (498)
Q Consensus       187 ~~~~l~~-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-------~l~~g~~dg~i  258 (498)
                      +..+|.. +.....++-.|++.|+.+..+....                 .+ -+.|.|+.+       .-++|-.+..|
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d-----------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~sv  539 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-----------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSV  539 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCC-----------------cc-eeecCCchhHHhcCccceEEeecccce
Confidence            4444443 4445567777888887766655432                 22 455666432       12344445556


Q ss_pred             EEEECCCCeeeEEEeccC-----CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          259 YVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       259 ~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      .-.|.+...-........     ....|..-  ....++++++..|-|++||.-    .......+.+....|..+..+.
T Consensus       540 FrIDPR~~gNKi~v~esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta  613 (776)
T COG5167         540 FRIDPRARGNKIKVVESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTA  613 (776)
T ss_pred             EEecccccCCceeeeeehhcccccccccccc--ccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeec
Confidence            556654322111111222     22233332  345689999999999999974    3334445666778899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC
Q 010883          334 DGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       334 ~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      +|+++++.+. ..+.+-|++-.
T Consensus       614 ~Gk~ilaTCk-~yllL~d~~ik  634 (776)
T COG5167         614 NGKHILATCK-NYLLLTDVPIK  634 (776)
T ss_pred             CCcEEEEeec-ceEEEEecccc
Confidence            9999887765 46888887653

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.33  E-value=4.6  Score=37.76  Aligned_cols=120  Identities=18%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCe------EEEEECCC--C----eEEEEEeecCCCce--------eEEEEEeCCCCCe
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVER--G----WKIQKDILAKSLRW--------TVTDTSLSPDQRH  190 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~------i~vw~~~~--~----~~~~~~~~~~~~~~--------~v~~~~~sp~~~~  190 (498)
                      -+.+..+.+.+++..+++.+.+|.      +..+++..  +    -.+..........+        ..-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            456788899976666777777777      55555443  1    01111111111111        3447788778887


Q ss_pred             EEEEECC------CeEEEEECCCCceeccccccccccCcccccc--CCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          191 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       191 l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      +++.-.+      ..|..++.. |+......++....   ....  ..........+|+++|+|+.|+++..
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~---~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFL---PDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccc---cccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            7776666      788888876 55544333322110   0000  11223457999999999997776643

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=94.28  E-value=5.2  Score=38.28  Aligned_cols=70  Identities=13%  Similarity=0.046  Sum_probs=33.4

Q ss_pred             CCCEEEEEEC-CCeEEEEECCCC-eEEEEEeecCC-CceeEEEEEeCCCCCeEEEEECC-----------CeEEEEECCC
Q 010883          142 DGSLFVAGFQ-ASQIRIYDVERG-WKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMS-----------PIVHIVDVGS  207 (498)
Q Consensus       142 dg~~la~~~~-dg~i~vw~~~~~-~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~s~d-----------~~i~iwd~~~  207 (498)
                      ++++.+.|+. +..+.++|+... ........... .+.....+  .-++++.+.|+..           ..+..||..+
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v--~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~  115 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA--FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT  115 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEE--EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence            5555555543 445777887531 11111111111 11111122  2356677777643           2477788877


Q ss_pred             Cceecc
Q 010883          208 GTMESL  213 (498)
Q Consensus       208 ~~~~~~  213 (498)
                      .+....
T Consensus       116 n~W~~~  121 (376)
T PRK14131        116 NSWQKL  121 (376)
T ss_pred             CEEEeC
Confidence            665444

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=5.4  Score=43.21  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=27.6

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER  162 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~  162 (498)
                      ......++|+|...++|.+...|.|.+|-...
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccc
Confidence            44567789999999999999999999998754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.08  E-value=5.6  Score=37.87  Aligned_cols=190  Identities=13%  Similarity=0.130  Sum_probs=86.2

Q ss_pred             EEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE--------------
Q 010883          136 VSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--------------  195 (498)
Q Consensus       136 ~~~~s~dg~~la~~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s--------------  195 (498)
                      .+..-|+|+.++++-.      -|-+.++|-++-+.............--.++-|.|..+.++++.              
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence            3444578888887532      24577888776544433333223333456778888888888764              


Q ss_pred             ------CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEE-eCCCeEEEEEC-CC
Q 010883          196 ------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAG-SSDDCIYVYDL-EA  265 (498)
Q Consensus       196 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g-~~dg~i~vwd~-~~  265 (498)
                            ....+++||+.+.+.++.+.+....              ..+..++|..  +..+=++| --..+|..|-- ..
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g--------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~  279 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG--------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD  279 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEEES-TTE--------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred             HhhcccccCeEEEEECCCCcEeeEEecCCCC--------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence                  2358999999999887777655321              1355677754  34433333 33455655533 33


Q ss_pred             Cee----eEEEecc-----------------CCCeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEe-cc-
Q 010883          266 NKL----SLRILAH-----------------TSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVL-MG-  321 (498)
Q Consensus       266 ~~~----~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~-~~-  321 (498)
                      ++.    +..+...                 ..-|+.|..| .+.++|+.+. .+|.|+.||+.... ..+.+... .+ 
T Consensus       280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISDP~-~Pkl~gqv~lGG  357 (461)
T PF05694_consen  280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISDPF-NPKLVGQVFLGG  357 (461)
T ss_dssp             TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SSTT-S-EEEEEEE-BT
T ss_pred             CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCCCC-CCcEEeEEEECc
Confidence            332    1222111                 3457899998 6666666554 68999999997332 12222211 11 


Q ss_pred             --------------ccccEEEEEEcCCCCEEEEE
Q 010883          322 --------------HLEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       322 --------------~~~~v~~l~~~~~~~~l~s~  341 (498)
                                    -.+...-+..|.||+.|...
T Consensus       358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             TTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             EeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence                          11234567777788777654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.96  E-value=0.43  Score=49.97  Aligned_cols=115  Identities=12%  Similarity=-0.001  Sum_probs=76.8

Q ss_pred             cEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeE-----EEe------ccCCCeeEEEEeCCCCCEEEEeeCCCeEE
Q 010883          236 GIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSL-----RIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCK  302 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  302 (498)
                      +|..+...+|+...++..  .+-.|+.||+++-....     -+.      .......++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            566777777876555443  33378899987532211     111      22345577889865566678888999999


Q ss_pred             EEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          303 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       303 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      +..+.    .......-..-....++++|+|.|+.++.|-..|++.-|...-
T Consensus       182 V~~~~----~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  182 VKSTK----QLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhh----hhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence            98875    2222211122456789999999999999999999998887543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.86  E-value=3.5  Score=44.42  Aligned_cols=35  Identities=14%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          321 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       321 ~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      .+.++|..+.....-..+.+-+..++|.+||+...
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            56789999999888888999999999999999873

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.39  E-value=10  Score=38.56  Aligned_cols=192  Identities=10%  Similarity=0.149  Sum_probs=91.0

Q ss_pred             CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE--e--ccccccEEEEEE
Q 010883          256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--L--MGHLEGITFIDS  331 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~--~~~~~~v~~l~~  331 (498)
                      -.|+|+++. |..+.++.-..+.+-.+.|+  +.+.|++...+|++++|++-     +..+..  .  ......|..+.+
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~~~~~I~ec~~  135 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-----GEFIESNSVGFESQMSDIVECRF  135 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-----hhhhcccccccccccCceeEEEE
Confidence            458888874 55555554444588899996  45567788899999999984     222222  1  112233555555


Q ss_pred             cCCCCEEEEEeCCCcEE-EEeCCCCCCccccccCc---ccccccceeecCCcCccc-cc-----CCCCceEEEEccCcee
Q 010883          332 RGDGRYLISNGKDQAIK-LWDIRKMSSNASCNLGF---RSYEWDYRWMDYPPQARD-LK-----HPCDQSVATYKGHSVL  401 (498)
Q Consensus       332 ~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~  401 (498)
                      ..+|-.+++.  +|.+. +-+............+.   ....|....-.+.+.... +.     +.+.........|.. 
T Consensus       136 f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~-  212 (829)
T KOG2280|consen  136 FHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL-  212 (829)
T ss_pred             ecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc-
Confidence            4455433333  33333 33332211110000000   011122111111110000 00     000000000001110 


Q ss_pred             EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--cCCCCeeeeEEcCCC
Q 010883          402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQ  459 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~  459 (498)
                      ............||+.++|+--...|.|.+-+....+....+.  .|. +--.++|+-+.
T Consensus       213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd  271 (829)
T KOG2280|consen  213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND  271 (829)
T ss_pred             CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence            0001112223567789999999999999999988877776665  332 23366675444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.34  E-value=0.071  Score=53.97  Aligned_cols=114  Identities=15%  Similarity=0.198  Sum_probs=66.9

Q ss_pred             ceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeeeEEE-----eccCCCeeEEEEeC--CCCCEEEEeeCCCeEE
Q 010883          233 YSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRI-----LAHTSDVNTVCFGD--ESGHLIYSGSDDNLCK  302 (498)
Q Consensus       233 h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~--~~~~~~~~-----~~~~~~v~~~~~~~--~~~~~l~s~s~dg~i~  302 (498)
                      ..+.+..++|-. +-..++  -.-|.+.|||+.  .|+....+     .....++.-+.|+|  .+.-++..+..++.|+
T Consensus       131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~  208 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR  208 (1283)
T ss_pred             CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence            344666777643 111122  233678888875  34332222     23334556666654  3456777788888888


Q ss_pred             EEcCccccCCCceeEEeccccccEEEEE-----------EcCCCCEEEEEeCCCcEEEEeCC
Q 010883          303 VWDRRCLNVKGKPAGVLMGHLEGITFID-----------SRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       303 vwd~~~~~~~~~~~~~~~~~~~~v~~l~-----------~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      +....     ......+.+|...++.++           .+|||..++.++.||.+++|.+-
T Consensus       209 lL~~~-----ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  209 LLNIN-----RALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             Eeeec-----hHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            87653     112234445666555443           57888888888888888887654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.04  E-value=10  Score=38.95  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             cEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-------C----e---------eeEEEeccCCCeeEEEEeC-CCCCEE
Q 010883          236 GIFSLKFST--DGRELVAGSSDDCIYVYDLEA-------N----K---------LSLRILAHTSDVNTVCFGD-ESGHLI  292 (498)
Q Consensus       236 ~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~~-~~~~~l  292 (498)
                      .|+.|....  +...|+++..||.|.+|.+++       .    +         +...+ .-...++.++++. ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence            466665544  456889999999999996631       0    0         11111 2234678888851 346788


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---C---EEEEEeCCCcEEEEeC
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---R---YLISNGKDQAIKLWDI  352 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~---~l~s~~~dg~i~iwd~  352 (498)
                      |+++....|.||-....+... ....-..+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~-~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERF-YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEecccccc-ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888888665221111 111111256678888887643   2   7788899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.49  E-value=1.4  Score=38.36  Aligned_cols=81  Identities=16%  Similarity=0.177  Sum_probs=52.5

Q ss_pred             eCCCCCeEEEEECCCeEEEEECCCCceeccc-cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 010883          184 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD  262 (498)
Q Consensus       184 ~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd  262 (498)
                      +..++++|++.+.+|.+++||+.+++..... .+...-....   .........|..+.++.+|.-|++-+ +|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~---~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP---VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc---cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            4457889999999999999999988764333 1111111000   00003344789999998888776654 57889998


Q ss_pred             CCCCee
Q 010883          263 LEANKL  268 (498)
Q Consensus       263 ~~~~~~  268 (498)
                      ..-+..
T Consensus        94 ~~L~~W   99 (219)
T PF07569_consen   94 PDLGCW   99 (219)
T ss_pred             ccccee
Confidence            765544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=92.43  E-value=8.8  Score=35.37  Aligned_cols=101  Identities=14%  Similarity=0.152  Sum_probs=55.1

Q ss_pred             CCCeEEEEECCCeEEEEECCC--CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 010883          187 DQRHLVYASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL  263 (498)
Q Consensus       187 ~~~~l~~~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~  263 (498)
                      ++++|+.|+.+|.. +.++..  ++......                  ...|+++...+.-+.|++-+ ....++++++
T Consensus        12 ~~~~lL~GTe~Gly-~~~~~~~~~~~~kl~~------------------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L   72 (302)
T smart00036       12 DGKWLLVGTEEGLY-VLNISDQPGTLEKLIG------------------RRSVTQIWVLEENNVLLMISGKKPQLYSHPL   72 (302)
T ss_pred             CCcEEEEEeCCceE-EEEcccCCCCeEEecC------------------cCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence            34689999999854 444543  22222222                  22799999998777666554 3345999998


Q ss_pred             CCCee---------------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcC
Q 010883          264 EANKL---------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR  306 (498)
Q Consensus       264 ~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~  306 (498)
                      ..-..               ......|.......+........++++....+|.++..
T Consensus        73 ~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~  130 (302)
T smart00036       73 SALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQW  130 (302)
T ss_pred             HHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEc
Confidence            43221               01122444434444443222234455555667777644

Unpublished observations.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.42  E-value=1  Score=39.10  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe----ecC-------CCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883          138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----LAK-------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       138 ~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~----~~~-------~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      .+..++++|++-+.+|.+++||+.+++.+....    ...       .....|..+.++.+|.-|++-+ +|....|+..
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            355678899999999999999999885544331    011       2445789999998888777665 5788999877


Q ss_pred             CCceec
Q 010883          207 SGTMES  212 (498)
Q Consensus       207 ~~~~~~  212 (498)
                      -+....
T Consensus        96 L~~W~~  101 (219)
T PF07569_consen   96 LGCWIR  101 (219)
T ss_pred             cceeEE
Confidence            655433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.38  E-value=10  Score=35.85  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=17.8

Q ss_pred             CCCeEEEEECC-----------CeEEEEECCCCceecc
Q 010883          187 DQRHLVYASMS-----------PIVHIVDVGSGTMESL  213 (498)
Q Consensus       187 ~~~~l~~~s~d-----------~~i~iwd~~~~~~~~~  213 (498)
                      ++++.+.|+.+           ..+..||..+.+....
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~  100 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL  100 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecC
Confidence            67777777753           2477788877765544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.21  E-value=2.4  Score=40.64  Aligned_cols=150  Identities=14%  Similarity=0.132  Sum_probs=90.3

Q ss_pred             CCCCEEE-EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-------EEEEEeCCCcEEEEeCCCCCCc
Q 010883          287 ESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-------YLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       287 ~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      .+..+|+ .|.....++--|+.    .++.+..+.-|...  -+.|.|+.+       .-++|-.+..|.-.|.+...  
T Consensus       477 ~dssli~~dg~~~~kLykmDIE----rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--  548 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIE----RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--  548 (776)
T ss_pred             CCcceEEecCCCcccceeeecc----cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC--
Confidence            4444444 44555667777777    78888888777654  466777432       12334455556666665422  


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                                                     ..+.......   ......|+........|+|+|+..|.|++||--.-+
T Consensus       549 -------------------------------NKi~v~esKd---Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r  594 (776)
T COG5167         549 -------------------------------NKIKVVESKD---YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR  594 (776)
T ss_pred             -------------------------------Cceeeeeehh---ccccccccccccccCceEEEecCCCceeeehhhcch
Confidence                                           1111111110   111112222333356799999999999999965544


Q ss_pred             EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          439 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       439 ~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      ....+.+-...|..+..+.+|+++++.+. ..+.+-|+...
T Consensus       595 AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ik  634 (776)
T COG5167         595 AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPIK  634 (776)
T ss_pred             hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecccc
Confidence            45556677788999999999997766654 46667776543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.02  E-value=4.8  Score=31.38  Aligned_cols=122  Identities=11%  Similarity=0.165  Sum_probs=71.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883          329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH  408 (498)
Q Consensus       329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (498)
                      -.|......|++++.-|+|.|++..........                          ....+..+.-......+....
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------------------------~~~~i~~LNin~~italaaG~   57 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------------------------QDSDISFLNINQEITALAAGR   57 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCcccccccc--------------------------ccCceeEEECCCceEEEEEEe
Confidence            356666667888999999999988763322110                          124455555555444554444


Q ss_pred             eccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC---CCCeEEEEeCCCcEEEecCCCCC
Q 010883          409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP---SQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +.+  +.+...|+.|+. ..+..||+....-+..-.. ...|+++.+-.   ...-|+..+.+..|.-+|..+.+
T Consensus        58 l~~--~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   58 LKP--DDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             cCC--CCCcCEEEEecc-ceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            444  234556777765 5599999988766544332 35577776632   12234444446667666665543

>PLN02193 nitrile-specifier protein

Probab=91.90  E-value=14  Score=36.58  Aligned_cols=105  Identities=11%  Similarity=0.036  Sum_probs=54.4

Q ss_pred             CCCeEEEEECC-----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----C
Q 010883          187 DQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----D  256 (498)
Q Consensus       187 ~~~~l~~~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g  256 (498)
                      ++++.+.|+.+     +.+.++|+.+.+..........       +.....|     +++. -++++++.|+.+     .
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~-------P~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~  294 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG-------PTPRSFH-----SMAA-DEENVYVFGGVSATARLK  294 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC-------CCCccce-----EEEE-ECCEEEEECCCCCCCCcc
Confidence            56666777654     3588889888766544322110       0001112     1222 256667777654     3


Q ss_pred             eEEEEECCCCeeeEEEe-----ccCCCeeEEEEeCCCCCEEEEeeCC----CeEEEEcCc
Q 010883          257 CIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRR  307 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~vwd~~  307 (498)
                      .+..||+.+.+....-.     ..... ..++.  .++++++.++.+    ..+.+||+.
T Consensus       295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~  351 (470)
T PLN02193        295 TLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV--VQGKVWVVYGFNGCEVDDVHYYDPV  351 (470)
T ss_pred             eEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE--ECCcEEEEECCCCCccCceEEEECC
Confidence            47788888766432111     01111 12222  245677777655    458888886

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=91.86  E-value=12  Score=35.76  Aligned_cols=53  Identities=21%  Similarity=0.268  Sum_probs=26.9

Q ss_pred             CCCEEEEEeCC-----------CeEEEEECCCCeeeEEEeccCCCe--eEEEEeCCCCCEEEEeeCC
Q 010883          245 DGRELVAGSSD-----------DCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD  298 (498)
Q Consensus       245 ~g~~l~~g~~d-----------g~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~s~d  298 (498)
                      ++.+.+.|+.+           ..+..||..+.+....-.......  .+.... .++.+.+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCCEEEEECCCC
Confidence            56677777643           247788988766433211111111  111221 356777777754

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.81  E-value=7.2  Score=32.98  Aligned_cols=52  Identities=13%  Similarity=0.188  Sum_probs=29.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEEEe------------ccCCCeeEEEEeCCCCCEEEEee
Q 010883          245 DGRELVAGSSDDCIYVYDLEANKLSLRIL------------AHTSDVNTVCFGDESGHLIYSGS  296 (498)
Q Consensus       245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~l~s~s  296 (498)
                      ||...|-.-.+..|...|.++|+.+.-+.            .|..-.+.+++.|..++++++|-
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            44444433344455556666666554332            34456778898766667777763

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.80  E-value=5.9  Score=33.77  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=62.7

Q ss_pred             CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---C---eEEEE-
Q 010883          189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---D---CIYVY-  261 (498)
Q Consensus       189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---g---~i~vw-  261 (498)
                      +.|..+.....|.+|++..........+....               .|..+.++..|++|++--.+   .   .+++| 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~---------------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~   93 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVG---------------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF   93 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchh---------------heeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence            44444456678999999855554444444332               79999999999999996432   2   45664 


Q ss_pred             --ECC--CCeeeE-EEec---------------------cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          262 --DLE--ANKLSL-RILA---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       262 --d~~--~~~~~~-~~~~---------------------~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                        ...  ..+++. ++.+                     -..++.+++..|-.|++++.+  ++.+.+|.+.
T Consensus        94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~  163 (215)
T PF14761_consen   94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK  163 (215)
T ss_pred             EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence              221  111111 1112                     234567788777778776543  4578888775

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.78  E-value=3.8  Score=44.36  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=26.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883          236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      ....++|+|.-.+++.++..|.|.++-...-+
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccceE
Confidence            56678999999999999999999999765443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.73  E-value=0.026  Score=52.96  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EECCCeEEEEECCCCceecc
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESL  213 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s~d~~i~iwd~~~~~~~~~  213 (498)
                      ....|-|.+.-++.++.+..+..||-... ....    ....+...+++|..++..++. +-..+.+.+|++.+.....+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le----~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL  112 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILE----LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL  112 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcc-eecc----cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence            34567777766888888888999996643 2222    223335677888888775554 55678899999987544332


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY  293 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  293 (498)
                      ....              .|+...  +.|++.+..++.+...|.+.|++..+.+.....-.|...++++++. ..+ +.+
T Consensus       113 E~gg--------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-~vi  174 (615)
T KOG2247|consen  113 ESGG--------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-YVI  174 (615)
T ss_pred             hccC--------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-eee
Confidence            2211              122122  7899999999999999999999988877666665599999999997 433 444


Q ss_pred             EeeCC
Q 010883          294 SGSDD  298 (498)
Q Consensus       294 s~s~d  298 (498)
                      .++.|
T Consensus       175 l~dcd  179 (615)
T KOG2247|consen  175 LCDCD  179 (615)
T ss_pred             ecCcH
Confidence            44444

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.71  E-value=11  Score=35.07  Aligned_cols=137  Identities=9%  Similarity=0.037  Sum_probs=67.0

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCeE---EEEEeecCCCceeEEEEEeCCCCCeEEEEEC-----CCeEEEEECCCC
Q 010883          142 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG  208 (498)
Q Consensus       142 dg~~la~~~~d-----g~i~vw~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-----d~~i~iwd~~~~  208 (498)
                      ++.+++.|+.+     ..+..||+.+..-   ..................  -++++.+.|+.     ...+..||..+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            56677777754     3566777766532   111111111111111122  25666677664     236888888877


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeeeEEEecc---CCC---
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSLRILAH---TSD---  278 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg----~i~vwd~~~~~~~~~~~~~---~~~---  278 (498)
                      +......++...               .....+..-++++.+.|+.++    .+.+||..+.+... +...   ..+   
T Consensus       150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~~~  213 (323)
T TIGR03548       150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK-VADPTTDSEPISL  213 (323)
T ss_pred             CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE-CCCCCCCCCceec
Confidence            665443222100               011112223567777777653    35688988776432 2111   011   


Q ss_pred             --eeEEEEeCCCCCEEEEeeCC
Q 010883          279 --VNTVCFGDESGHLIYSGSDD  298 (498)
Q Consensus       279 --v~~~~~~~~~~~~l~s~s~d  298 (498)
                        ...+..  .++.+++.|+.+
T Consensus       214 ~~~~~~~~--~~~~iyv~GG~~  233 (323)
T TIGR03548       214 LGAASIKI--NESLLLCIGGFN  233 (323)
T ss_pred             cceeEEEE--CCCEEEEECCcC
Confidence              112222  356788888866

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.65  E-value=13  Score=35.51  Aligned_cols=143  Identities=13%  Similarity=0.159  Sum_probs=73.3

Q ss_pred             eEEEEEeCCCCCeEEEEE-----------CCC-eEEEEECCC--CceeccccccccccCccccccCCCCceecEEEEEEc
Q 010883          178 TVTDTSLSPDQRHLVYAS-----------MSP-IVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS  243 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s-----------~d~-~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  243 (498)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+  ++......+..   ++           .....+++.
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~l-----------~~p~Gi~~~   80 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---EL-----------SMVTGLAVA   80 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---CC-----------CCccceeEe
Confidence            567889999999777643           123 676666432  22211111111   10           135778898


Q ss_pred             CCCCEEEEEeCCCeEEEE-ECCCC-----ee--eE-EEec----cCCCeeEEEEeCCCCCEEEEeeCC------------
Q 010883          244 TDGRELVAGSSDDCIYVY-DLEAN-----KL--SL-RILA----HTSDVNTVCFGDESGHLIYSGSDD------------  298 (498)
Q Consensus       244 ~~g~~l~~g~~dg~i~vw-d~~~~-----~~--~~-~~~~----~~~~v~~~~~~~~~~~~l~s~s~d------------  298 (498)
                      ++|  |+++... .|..+ |....     +.  +. .+..    +......++|. +++.+.++-+..            
T Consensus        81 ~~G--lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~  156 (367)
T TIGR02604        81 VGG--VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSD  156 (367)
T ss_pred             cCC--EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCCceeccCCCcc
Confidence            888  4444444 35444 54321     11  11 1211    12346788997 677765544421            


Q ss_pred             -------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC
Q 010883          299 -------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK  343 (498)
Q Consensus       299 -------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~  343 (498)
                             |.|.-++..     +.....+.........++|+|+|+++++-..
T Consensus       157 ~~~~~~~g~i~r~~pd-----g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       157 ESRQGLGGGLFRYNPD-----GGKLRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             CcccccCceEEEEecC-----CCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence                   334444442     2222222222234568899999988776443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.55  E-value=10  Score=34.24  Aligned_cols=223  Identities=15%  Similarity=0.188  Sum_probs=116.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECC------CC-eeeEEEec-----cCCCeeEEEEeCCC-----------CCEE
Q 010883          236 GIFSLKFSTDGRELVAGSSDDCIYVYDLE------AN-KLSLRILA-----HTSDVNTVCFGDES-----------GHLI  292 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-----------~~~l  292 (498)
                      .-+.|+++|.+.+-++....+...+||..      .. .++..+..     .....+.+.|+...           ...+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            46789999999877877778899999986      12 22333331     23467888886221           1236


Q ss_pred             EEeeCCCeEEEEcCccccCC-CceeEEec-cccccE-EEEEEc--CCCCEEE-EEeCCCcEEEEeCCCCCCccccccCcc
Q 010883          293 YSGSDDNLCKVWDRRCLNVK-GKPAGVLM-GHLEGI-TFIDSR--GDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~-~~~~~~~~-~~~~~v-~~l~~~--~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                      +.+++||+|.-|........ ......+. .....| ..+++-  ..+.+|. +--..++|.+||-.-......  ..+.
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~--g~F~  181 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP--GSFI  181 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC--CCcc
Confidence            78889999999986411100 01111221 111222 334443  2344444 444678888887543221100  0000


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--  444 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--  444 (498)
                      ....+   ..+.|          -.+..+.+.-      -+.+.. -.++++.=+.|-.-|.|-+||+ .|+.+.++.  
T Consensus       182 DP~iP---agyAP----------FnIqnig~~l------yVtYA~-qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~  240 (336)
T TIGR03118       182 DPALP---AGYAP----------FNVQNLGGTL------YVTYAQ-QDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS  240 (336)
T ss_pred             CCCCC---CCCCC----------cceEEECCeE------EEEEEe-cCCcccccccCCCcceEEEEcC-CCcEEEEeccC
Confidence            00000   00000          0011111110      000110 1123333344555688999997 678888774  


Q ss_pred             cCCCCeeeeEEcC------CCCeEEEEeCCCcEEEecCCCCCC
Q 010883          445 YHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       445 ~h~~~v~~l~~sp------~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +.-..-+.++..|      .+.+|+---.||+|..+|..++..
T Consensus       241 g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~  283 (336)
T TIGR03118       241 GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ  283 (336)
T ss_pred             CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence            2334556777765      455677666799999999886653

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.32  E-value=11  Score=34.09  Aligned_cols=231  Identities=11%  Similarity=0.122  Sum_probs=119.2

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCc----eec-cccccccccCccccccCCCCceecEEEEEEcCCCC-----
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT----MES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-----  247 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-----  247 (498)
                      .-..|+++|.+.+.++....+...+||.....    ... ...++..         ....-....+.+.|+....     
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~---------~~~~~~~~PTGiVfN~~~~F~vt~   94 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP---------PPLAAEGTPTGQVFNGSDTFVVSG   94 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC---------CCCCCCCCccEEEEeCCCceEEcC
Confidence            35678999999888887778899999986211    100 1111100         0000112355555553222     


Q ss_pred             -------EEEEEeCCCeEEEEECCCCee-----eEEEe-ccCCCe-eEEEEeC-CCCCEEEEe-eCCCeEEEEcCccccC
Q 010883          248 -------ELVAGSSDDCIYVYDLEANKL-----SLRIL-AHTSDV-NTVCFGD-ESGHLIYSG-SDDNLCKVWDRRCLNV  311 (498)
Q Consensus       248 -------~l~~g~~dg~i~vwd~~~~~~-----~~~~~-~~~~~v-~~~~~~~-~~~~~l~s~-s~dg~i~vwd~~~~~~  311 (498)
                             .++.+++||+|.-|...-+..     ...+. .....| ..+++.. ..+.+|+.+ -..++|.|||-.    
T Consensus        95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----  170 (336)
T TIGR03118        95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----  170 (336)
T ss_pred             CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc----
Confidence                   367788999999998533222     11221 112333 3455531 224455544 457899999864    


Q ss_pred             CCceeEE---eccc-----cc-----------cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883          312 KGKPAGV---LMGH-----LE-----------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY  372 (498)
Q Consensus       312 ~~~~~~~---~~~~-----~~-----------~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  372 (498)
                       ..++..   +...     -.           .|+...-.++.+.=+.+..-|.|-+||+..                  
T Consensus       171 -f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G------------------  231 (336)
T TIGR03118       171 -FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG------------------  231 (336)
T ss_pred             -cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC------------------
Confidence             111111   1100     00           011111122222222233345667776653                  


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc-c-CCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC---
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV-Y-STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---  447 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---  447 (498)
                                       +.++.+...........+...|. | ...|.+|+---.||+|..||..+++.+..+....   
T Consensus       232 -----------------~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p  294 (336)
T TIGR03118       232 -----------------QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP  294 (336)
T ss_pred             -----------------cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence                             55555544433333333333322 1 2246666666669999999999999888886433   


Q ss_pred             ---CCeeeeEEcC
Q 010883          448 ---SPVRDCSWHP  457 (498)
Q Consensus       448 ---~~v~~l~~sp  457 (498)
                         ..++.|+|..
T Consensus       295 i~i~GLWgL~fGn  307 (336)
T TIGR03118       295 VKVDGLWSLTFGN  307 (336)
T ss_pred             EEecCeEEeeeCC
Confidence               3467788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.77  E-value=11  Score=34.19  Aligned_cols=94  Identities=19%  Similarity=0.321  Sum_probs=59.9

Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeE
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSL  270 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------~dg~i~vwd~~~~~~~~  270 (498)
                      -..|++||..+.+......                +-.+.|.++.|..+.+.++.|.      ....+..||+.+.... 
T Consensus        15 C~~lC~yd~~~~qW~~~g~----------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-   77 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGN----------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-   77 (281)
T ss_pred             CCEEEEEECCCCEeecCCC----------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-
Confidence            3469999998877654433                2345899999997777666664      3456888999877642 


Q ss_pred             EEec-----cCCCeeEEEEeCCCCC-EEEEee-C--CCeEEEEcCc
Q 010883          271 RILA-----HTSDVNTVCFGDESGH-LIYSGS-D--DNLCKVWDRR  307 (498)
Q Consensus       271 ~~~~-----~~~~v~~~~~~~~~~~-~l~s~s-~--dg~i~vwd~~  307 (498)
                      .+..     -.++|..+.+...+.. +.+.|. .  +..|..||=.
T Consensus        78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence            2322     2478888888544544 444443 2  2356667644

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.75  E-value=6.4  Score=38.11  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=55.6

Q ss_pred             CceeEEEEEeCCCCCeEEEEECCCeEEEEE---------CCCCceeccccccccccCccccccCCCCceecEEEEEEcCC
Q 010883          175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVD---------VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD  245 (498)
Q Consensus       175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  245 (498)
                      ....|..+..++.|..++.++.+|.+.++=         ++.|+.............+-..     ...-.+..++|+|+
T Consensus       102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-----s~~ltl~Qa~WHP~  176 (741)
T KOG4460|consen  102 VLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-----STSLTLKQAAWHPS  176 (741)
T ss_pred             ceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-----CCceeeeeccccCC
Confidence            345788899999999999999999665542         1223221111111111100000     01125778899996


Q ss_pred             C---CEEEEEeCCCeEEEEECCCCeee
Q 010883          246 G---RELVAGSSDDCIYVYDLEANKLS  269 (498)
Q Consensus       246 g---~~l~~g~~dg~i~vwd~~~~~~~  269 (498)
                      .   ..|+.-+.|+.|++||+.....+
T Consensus       177 S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  177 SILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             ccCCceEEEEecCcEEEEEecCCcchh
Confidence            5   67888889999999999765443

>PLN02193 nitrile-specifier protein

Probab=90.52  E-value=19  Score=35.63  Aligned_cols=148  Identities=13%  Similarity=0.070  Sum_probs=73.4

Q ss_pred             CCCEEEEEECC-----CeEEEEECCCCeEEEEEeec---CCCceeEEEEEeCCCCCeEEEEECCC-----eEEEEECCCC
Q 010883          142 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSG  208 (498)
Q Consensus       142 dg~~la~~~~d-----g~i~vw~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~s~d~-----~i~iwd~~~~  208 (498)
                      ++.+.+.|+.+     ..+.+||+.+.. .......   ...+..-..+.  -++++.+.|+.++     .+..||+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~  304 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNE-WKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDK  304 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCE-EEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence            55667777654     357888887752 2221111   01111111112  2566677776543     4678888776


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEEEec----cCCCee
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILA----HTSDVN  280 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~~~~~~~----~~~~v~  280 (498)
                      +...........       ....+|    ..+.+  +++.++.++.+    ..+.+||+.+.+....-..    ......
T Consensus       305 ~W~~~~~~~~~~-------~~R~~~----~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~  371 (470)
T PLN02193        305 KWFHCSTPGDSF-------SIRGGA----GLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF  371 (470)
T ss_pred             EEEeCCCCCCCC-------CCCCCc----EEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence            654332211000       000111    11222  56777777655    4589999988775432111    111112


Q ss_pred             EEEEeCCCCCEEEEeeCC--------------CeEEEEcCc
Q 010883          281 TVCFGDESGHLIYSGSDD--------------NLCKVWDRR  307 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~d--------------g~i~vwd~~  307 (498)
                      +++.  .++++++.|+.+              ..+.+||+.
T Consensus       372 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~  410 (470)
T PLN02193        372 ASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE  410 (470)
T ss_pred             EEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence            2222  356777787753              246777775

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.52  E-value=1.7  Score=25.87  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=28.1

Q ss_pred             CCCcEEEEEec-CCeEEEEECCCCcEEEEeccCCCCeeeeEE
Q 010883          415 TGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSW  455 (498)
Q Consensus       415 ~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  455 (498)
                      |++++|+++.. ++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            46777777654 789999999999888887653 33334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.51  E-value=2  Score=35.76  Aligned_cols=31  Identities=10%  Similarity=0.040  Sum_probs=25.7

Q ss_pred             ccEEEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 010883          324 EGITFIDSRGDG------RYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       324 ~~v~~l~~~~~~------~~l~s~~~dg~i~iwd~~~  354 (498)
                      ..+..++|||.|      -+|++...++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999954      4688899999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN02153 epithiospecifier protein

Probab=90.50  E-value=16  Score=34.48  Aligned_cols=114  Identities=12%  Similarity=0.105  Sum_probs=56.0

Q ss_pred             CCCEEEEEECC-------CeEEEEECCCCeEEEEEeecC-CCc---eeEEEEEeCCCCCeEEEEECC-----CeEEEEEC
Q 010883          142 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILAK-SLR---WTVTDTSLSPDQRHLVYASMS-----PIVHIVDV  205 (498)
Q Consensus       142 dg~~la~~~~d-------g~i~vw~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~  205 (498)
                      ++++++.|+.+       ..+.+||+.+.. ........ ...   .....+.+  ++++++.|+.+     ..+.+||.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  108 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT-WSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT  108 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCE-EEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence            45677777653       357888887752 22111110 000   01222222  56677777653     35788888


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeee
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----------DCIYVYDLEANKLS  269 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----------g~i~vwd~~~~~~~  269 (498)
                      .+.+......+....     .+.....|     +++. -++++++.|+.+           ..|.+||..+.+..
T Consensus       109 ~t~~W~~~~~~~~~~-----~p~~R~~~-----~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~  172 (341)
T PLN02153        109 VKNEWTFLTKLDEEG-----GPEARTFH-----SMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV  172 (341)
T ss_pred             CCCEEEEeccCCCCC-----CCCCceee-----EEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence            877654433221100     00000011     2222 356667777653           25788998877653

>PRK13684 Ycf48-like protein; Provisional

Probab=90.50  E-value=15  Score=34.40  Aligned_cols=278  Identities=11%  Similarity=0.071  Sum_probs=126.2

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEEeec-CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~-~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      ...+++++|..+.+-+|+|. +|.  ||.. +.|+........ ......+.++.|.++ ..+++ +..+.|.. ..+.+
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG  118 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGG  118 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCC
Confidence            56789999986666677664 453  3433 333333322111 112235778888654 33343 44444322 22223


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDE  287 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~  287 (498)
                      +.-.........          .++  .....+.. .+..++ ++..|.|..=+ ..++.-..+. .-...+.++.+. +
T Consensus       119 ~tW~~~~~~~~~----------~~~--~~~i~~~~-~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~-~  182 (334)
T PRK13684        119 KNWTRIPLSEKL----------PGS--PYLITALG-PGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRS-P  182 (334)
T ss_pred             CCCeEccCCcCC----------CCC--ceEEEEEC-CCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEEC-C
Confidence            221111110000          011  11122222 233333 34455454322 2232222221 224567888886 5


Q ss_pred             CCCEEEEeeCCCeEEE-EcCccccCCCc-eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883          288 SGHLIYSGSDDNLCKV-WDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF  365 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~v-wd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  365 (498)
                      ++.+++++ ..|.+.. +|-     .+. -......-...++.+.+.++++.++++ ..|.+++=......         
T Consensus       183 ~g~~v~~g-~~G~i~~s~~~-----gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~---------  246 (334)
T PRK13684        183 DGKYVAVS-SRGNFYSTWEP-----GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE---------  246 (334)
T ss_pred             CCeEEEEe-CCceEEEEcCC-----CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC---------
Confidence            66555544 4565543 221     111 111222334678899999998877665 45665432111110         


Q ss_pred             ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-
Q 010883          366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-  444 (498)
                                               .-.......  .......+...+.+++..++ ++.+|.|. .....++.-.... 
T Consensus       247 -------------------------sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~  297 (334)
T PRK13684        247 -------------------------SWSKPIIPE--ITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPV  297 (334)
T ss_pred             -------------------------ccccccCCc--cccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCc
Confidence                                     000000000  00000012223445666554 44567554 3444555433332 


Q ss_pred             --cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          445 --YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       445 --~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                        .-....+.+.|..+++.++ .+..|.|..|+-
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        298 GEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             CCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence              1223577888877766655 556888888764

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.42  E-value=7.1  Score=30.46  Aligned_cols=118  Identities=15%  Similarity=0.188  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----EeecCCCceeEEEEE---eCC--CCCeEEEEECCCeEEEEEC
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----DILAKSLRWTVTDTS---LSP--DQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~----~~~~~~~~~~v~~~~---~sp--~~~~l~~~s~d~~i~iwd~  205 (498)
                      ..-.|.....-|++++..|+|.|++.........    ....-.....|++++   |.|  +...|+.|+ ...+..||+
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            4456777777899999999999998764321110    000111222577765   433  234566665 557999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSSDDCIYVYDLEANKLSLR  271 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~----~g~~l~~g~~dg~i~vwd~~~~~~~~~  271 (498)
                      ....-.....++.                 .|.++.+-.    +.. ++..+.+-.|.-||.+..+...+
T Consensus        81 ~~N~d~Fyke~~D-----------------Gvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   81 ENNSDLFYKEVPD-----------------GVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             ccCchhhhhhCcc-----------------ceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEE
Confidence            8876544444332                 566666532    233 44444456677777766555433

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.98  E-value=0.038  Score=51.99  Aligned_cols=141  Identities=15%  Similarity=0.171  Sum_probs=92.6

Q ss_pred             EEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCe
Q 010883          179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDC  257 (498)
Q Consensus       179 v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg~  257 (498)
                      .....|-|.+.-++.++.+..+..||-........ .                 .++....++|..++..++ .+-..+.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~-n-----------------~tg~aldm~wDkegdvlavlAek~~p   98 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL-N-----------------PTGKALDMAWDKEGDVLAVLAEKTGP   98 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceeccc-C-----------------CchhHhhhhhccccchhhhhhhcCCC
Confidence            44567888887788888888899998654332211 1                 122566788888877554 4456788


Q ss_pred             EEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC
Q 010883          258 IYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR  336 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  336 (498)
                      +++||+.+.... .+. +....-.-+.|+ +....++.+...|.+.+++..    ....+...-.|...++++++.+.+.
T Consensus        99 iylwd~n~eytq-qLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhg----tsR~iiv~Gkh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen   99 IYLWDVNSEYTQ-QLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHG----TSRRIIVMGKHQRRGTQIAVTLEDY  172 (615)
T ss_pred             eeechhhhhhHH-HHhccCcchHHHHhhc-cCCccccccccccceEEEecc----chhhhhhhcccccceeEEEecccce
Confidence            999999875432 121 111111226786 667778888899999999976    4444444444889999999998765


Q ss_pred             EEEEEeCC
Q 010883          337 YLISNGKD  344 (498)
Q Consensus       337 ~l~s~~~d  344 (498)
                      .+ .++.|
T Consensus       173 vi-l~dcd  179 (615)
T KOG2247|consen  173 VI-LCDCD  179 (615)
T ss_pred             ee-ecCcH
Confidence            44 34444

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=89.78  E-value=35  Score=37.41  Aligned_cols=301  Identities=14%  Similarity=0.077  Sum_probs=0.0

Q ss_pred             cCCCCceEEEEEcC--CCCEEE-----EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC--eEEEEECCC
Q 010883          128 DQTTSRAYVSQFSA--DGSLFV-----AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSP  198 (498)
Q Consensus       128 ~~h~~~v~~~~~s~--dg~~la-----~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~s~d~  198 (498)
                      .+|...|-|....-  ++..|+     +.+.||.+.|=|.+    ..+.+...+.-..|..+....-..  +||..--||
T Consensus       344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN----yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg  419 (1899)
T KOG4659|consen  344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN----YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG  419 (1899)
T ss_pred             CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch----heeeecCCCceEEEEEecCCCccceeEEEecCcCc


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD  278 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  278 (498)
                      ++.|=|..+.+...+.......                       +.+++=++++..-...=.|-.-|.--....+.-..
T Consensus       420 tlyvSdp~s~qv~rv~sl~~~d-----------------------~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~  476 (1899)
T KOG4659|consen  420 TLYVSDPLSKQVWRVSSLEPQD-----------------------SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIF  476 (1899)
T ss_pred             eEEecCCCcceEEEeccCCccc-----------------------cccCeeEEeccCcCccccccccCcchhcccceecc


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--------------------ccccEEEEEEcC-----
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--------------------HLEGITFIDSRG-----  333 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------------------~~~~v~~l~~~~-----  333 (498)
                      ...|+|. .++.+.++-+.  .|++.|      ....+.++.+                    |....+.++++|     
T Consensus       477 PkGIa~d-k~g~lYfaD~t--~IR~iD------~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl  547 (1899)
T KOG4659|consen  477 PKGIAFD-KMGNLYFADGT--RIRVID------TTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSL  547 (1899)
T ss_pred             CCceeEc-cCCcEEEeccc--EEEEec------cCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeE


Q ss_pred             ---CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          334 ---DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       334 ---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                         |.+.++--..++.|+|--=+-..+.............+.+.+...   +.+.......+..-+.......-++    
T Consensus       548 ~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~---r~Iavg~~G~lyvaEsD~rriNrvr----  620 (1899)
T KOG4659|consen  548 LVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQ---RDIAVGTDGALYVAESDGRRINRVR----  620 (1899)
T ss_pred             EEeecceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhh---hceeecCCceEEEEeccchhhhheE----


Q ss_pred             cccCCCCcEEEEEec----CCeEEE-EECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEE
Q 010883          411 PVYSTGQKYIYTGSH----DSCVYV-YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV  472 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~----dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~  472 (498)
                       ..+.||.+-+.++.    +..+.. .|.-+++-...-.+|-..+.+++.+|||..+++-..+-.|+
T Consensus       621 -~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr  686 (1899)
T KOG4659|consen  621 -KLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR  686 (1899)
T ss_pred             -EeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.48  E-value=32  Score=36.58  Aligned_cols=173  Identities=11%  Similarity=0.047  Sum_probs=99.6

Q ss_pred             CCCCceEEEEEc---C----CCCEEEEEECCCeEEEEE------CCCC---------eEEEEEeecCCCceeEEEEEeCC
Q 010883          129 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYD------VERG---------WKIQKDILAKSLRWTVTDTSLSP  186 (498)
Q Consensus       129 ~h~~~v~~~~~s---~----dg~~la~~~~dg~i~vw~------~~~~---------~~~~~~~~~~~~~~~v~~~~~sp  186 (498)
                      .-..+|..++|+   .    ..++|++= ....+.|+.      +...         ..+..+....-...+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            457899999998   3    22455554 455677776      1111         11222111112233678999999


Q ss_pred             -CCCeEEEEECCCeEEEEECCCCceec--cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 010883          187 -DQRHLVYASMSPIVHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL  263 (498)
Q Consensus       187 -~~~~l~~~s~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~  263 (498)
                       +.+.||+....|.-.||++.......  .........+.-   ..+......-..+.|.++-+.|++++.. .+.++|+
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~  231 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDF  231 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEEC
Confidence             56799999999999999993221111  111111111100   0000111345678999888888888655 5899999


Q ss_pred             CCCeeeEEE--eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          264 EANKLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       264 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                      .+......+  ......|..+.-++.+..+++.-. ...|...++.
T Consensus       232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~  276 (765)
T PF10214_consen  232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK  276 (765)
T ss_pred             CCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence            987653312  234567888888755444444333 3567777776

These proteins are found in fungi.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.35  E-value=24  Score=35.01  Aligned_cols=135  Identities=16%  Similarity=0.136  Sum_probs=68.5

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-------------CCeEEEE
Q 010883          137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV  203 (498)
Q Consensus       137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-------------d~~i~iw  203 (498)
                      +.+-++|.+++...  ..+..+|+. |+.+.......+...-=..+...|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            67789999887665  678888886 4344333332210000124667899999988772             1246667


Q ss_pred             ECCCCceeccccccccccCcccc-----------ccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFS-----------AADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR  271 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~  271 (498)
                      | .+|+...........+.....           .......-..+.++.+.+ ++.+++++-....|...|..+++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            7 788877766655543222210           001111223588999999 555555554455899999888888776


Q ss_pred             Eecc
Q 010883          272 ILAH  275 (498)
Q Consensus       272 ~~~~  275 (498)
                      +..+
T Consensus       309 lg~~  312 (477)
T PF05935_consen  309 LGPP  312 (477)
T ss_dssp             ES-S
T ss_pred             eCCC
Confidence            6544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PLN02153 epithiospecifier protein

Probab=89.19  E-value=20  Score=33.77  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=16.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCeee
Q 010883          245 DGRELVAGSSD-----DCIYVYDLEANKLS  269 (498)
Q Consensus       245 ~g~~l~~g~~d-----g~i~vwd~~~~~~~  269 (498)
                      ++++++.|+.+     ..+.+||+.+.+..
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~  114 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT  114 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence            46667777653     35888998876643

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.16  E-value=3.8  Score=44.19  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .+..+|..+........|.+-+..|+|.+|++...+..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~  277 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLG  277 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccCCCcc
Confidence            56778999999877778888899999999999876544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.15  E-value=16  Score=32.53  Aligned_cols=192  Identities=13%  Similarity=0.075  Sum_probs=112.2

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---------CCeEE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVH  201 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---------d~~i~  201 (498)
                      .+.-..+..-|||..-++-+.. -|.-.|-++.+...-.+.............|.+.|++-.++..         .+.|+
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~  181 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS  181 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence            4444567778888766654433 3444555554333322333334456788889999998888753         13455


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc---CCC
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH---TSD  278 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~  278 (498)
                      +|+.-.|.                          ..+.|+..|||..-++.-.+..|-..|..++.. ..+..-   ...
T Consensus       182 vfpaPqG~--------------------------gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~g  234 (353)
T COG4257         182 VFPAPQGG--------------------------GPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAG  234 (353)
T ss_pred             eeccCCCC--------------------------CCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCccccc
Confidence            55543221                          466788899998777766666777777766632 222211   112


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      -. -.|+++.+..-++-...+.+..+|....   .-....+.+....-.++.+...++.-.+--..+.|.-+|.++
T Consensus       235 sR-riwsdpig~~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         235 SR-RIWSDPIGRAWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             cc-ccccCccCcEEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence            22 2355677888888778888888887511   112223334444455666666666555555556677777665

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.14  E-value=0.25  Score=50.25  Aligned_cols=65  Identities=17%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeE-----------EcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS-----------WHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-----------~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +.-++..+-.++.|++....+... ..+.+|...+++++           .||||+.+|+++.||.+++|.+.-.+.
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~  269 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK  269 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence            557788888888888877655433 44556877666654           589999999999999999998764443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.94  E-value=16  Score=35.69  Aligned_cols=107  Identities=14%  Similarity=0.065  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec----CCCceeEEEEEeCCCC------CeEEEEE---------
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSPDQ------RHLVYAS---------  195 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~------~~l~~~s---------  195 (498)
                      +.++|.|||++|++--..|.|++++..++.........    .........|+++|+-      .+|....         
T Consensus        33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~  112 (454)
T TIGR03606        33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL  112 (454)
T ss_pred             eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc


Q ss_pred             -CCCeEEEEECCCC--------ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          196 -MSPIVHIVDVGSG--------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       196 -~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                       ....|.-|.+...        ...........|               .-..|+|.|||.++++.+..+
T Consensus       113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H---------------~GgrI~FgPDG~LYVs~GD~g  167 (454)
T TIGR03606       113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH---------------NGGRLVFGPDGKIYYTIGEQG  167 (454)
T ss_pred             cCCcEEEEEEecCCCCccccceEEEecCCCCCCc---------------CCceEEECCCCcEEEEECCCC

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.91  E-value=14  Score=31.62  Aligned_cols=119  Identities=12%  Similarity=0.042  Sum_probs=60.0

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC------CeEEEE---ECC--CCceec
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIV---DVG--SGTMES  212 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d------~~i~iw---d~~--~~~~~~  212 (498)
                      ..|..+.....|.+|++..... ...... ..-+.|..+.++..|+||++-=.+      ..+++|   ...  ......
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~-~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEEC-PLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCC-ceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            3444445677899999983211 111111 122479999999999999985332      256664   222  111111


Q ss_pred             cccccccccCccccccC------CCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 010883          213 LANVTEIHDGLDFSAAD------DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~------~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      .........+.......      ...-..++.+++..| .|+ |++|+. +.+.+|.+...
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~~-~~l~lf~l~~~  165 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGCG-NKLVLFTLKYQ  165 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEcC-CEEEEEEEEEE
Confidence            10000000000000000      001233677888888 555 666654 57888877543

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=88.58  E-value=30  Score=35.03  Aligned_cols=200  Identities=13%  Similarity=0.115  Sum_probs=108.1

Q ss_pred             ceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe---EEEEE
Q 010883          133 RAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIVD  204 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~---i~iwd  204 (498)
                      .+-.++.|||.+++|-+-     ..-++++-|+.++..+...+     ......++|.+|++.|.....|..   =++|-
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~  204 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR  204 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence            456778999999999653     33469999999985544322     224667899999998877665432   22332


Q ss_pred             --CCC--CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEe-ccC
Q 010883          205 --VGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRIL-AHT  276 (498)
Q Consensus       205 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~-~~~  276 (498)
                        +.+  ..-..+....  .            .. -..++.-+.+.++|+....   .+.+++.+.........+. .-.
T Consensus       205 h~~gt~~~~d~lvyeE~--d------------~~-f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~  269 (682)
T COG1770         205 HRLGTPGSSDELVYEEK--D------------DR-FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRE  269 (682)
T ss_pred             EecCCCCCcceEEEEcC--C------------Cc-EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcC
Confidence              332  1111111110  0            01 2333444456666666543   3468888776654332221 111


Q ss_pred             -CCeeEEEEeCCCCCEEEEeeCCC-eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEe
Q 010883          277 -SDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWD  351 (498)
Q Consensus       277 -~~v~~~~~~~~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd  351 (498)
                       +--..+.-  ....+++-...+| ..+|..... ......-..+..|...+.--.++--..+|+....++   .|++++
T Consensus       270 ~g~eY~~eh--~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~  346 (682)
T COG1770         270 NGVEYSVEH--GGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRD  346 (682)
T ss_pred             CCcEEeeee--cCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEe
Confidence             11122221  2233444444445 566665543 223333445666877777666666667777665543   477777


Q ss_pred             CCCC
Q 010883          352 IRKM  355 (498)
Q Consensus       352 ~~~~  355 (498)
                      ..+.
T Consensus       347 ~~~~  350 (682)
T COG1770         347 RKTG  350 (682)
T ss_pred             cCCC
Confidence            7653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.70  E-value=13  Score=34.79  Aligned_cols=113  Identities=19%  Similarity=0.189  Sum_probs=59.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc--cCceeE
Q 010883          325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK--GHSVLR  402 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  402 (498)
                      ..+.|+|.|||+++++ ...|.|++++... ...                               ..+....  ......
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g-~~~-------------------------------~~v~~~~~v~~~~~~   49 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDG-SLK-------------------------------TPVADLPEVFADGER   49 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTT-EEC-------------------------------EEEEE-TTTBTSTTB
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCC-cCc-------------------------------ceecccccccccccC
Confidence            4578999999987765 5599999999322 110                               1111111  011123


Q ss_pred             EEEEEEeccccCCCCcEEEEEecC--------CeEEEEECCCC-------cEE-EEecc---CCCCeeeeEEcCCCCeEE
Q 010883          403 TLIRCHFSPVYSTGQKYIYTGSHD--------SCVYVYDLVSG-------EQV-AALKY---HTSPVRDCSWHPSQPMLV  463 (498)
Q Consensus       403 ~~~~~~~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~-------~~~-~~~~~---h~~~v~~l~~sp~~~~l~  463 (498)
                      ....+.+.|.|..++.+.++.+..        ..|.-|....+       +.+ ..+..   ....-..|.|.|||.+.+
T Consensus        50 gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYv  129 (331)
T PF07995_consen   50 GLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYV  129 (331)
T ss_dssp             SEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEE
T ss_pred             CcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEE
Confidence            456677788887666655555532        24444544333       111 12222   223456799999998777


Q ss_pred             EEeCCCc
Q 010883          464 SSSWDGD  470 (498)
Q Consensus       464 s~~~Dg~  470 (498)
                      +.+..+.
T Consensus       130 s~G~~~~  136 (331)
T PF07995_consen  130 SVGDGGN  136 (331)
T ss_dssp             EEB-TTT
T ss_pred             EeCCCCC
Confidence            7765543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.29  E-value=25  Score=34.29  Aligned_cols=32  Identities=19%  Similarity=0.438  Sum_probs=25.8

Q ss_pred             CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      ..|.+++..+..+.|++...+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            34899999988899999999999999999863

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.15  E-value=26  Score=32.70  Aligned_cols=105  Identities=13%  Similarity=0.182  Sum_probs=50.1

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCeee---EEEeccCCCe--eEEEEeCCCCCEEEEeeC-----CCeEEEEcCccc
Q 010883          245 DGRELVAGSSD-----DCIYVYDLEANKLS---LRILAHTSDV--NTVCFGDESGHLIYSGSD-----DNLCKVWDRRCL  309 (498)
Q Consensus       245 ~g~~l~~g~~d-----g~i~vwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~  309 (498)
                      ++.+++.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++.  .++.+.+.|+.     ...+..||+...
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            55667777654     35777888776531   2222111111  22333  24566666664     235788887622


Q ss_pred             cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA----IKLWDIRK  354 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~----i~iwd~~~  354 (498)
                        ....+..+... ......+...++++.+.|+.++.    +.+||+.+
T Consensus       150 --~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~  195 (323)
T TIGR03548       150 --EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK  195 (323)
T ss_pred             --CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence              22222222111 11111222335667777776542    44666655

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.13  E-value=28  Score=33.04  Aligned_cols=152  Identities=11%  Similarity=0.155  Sum_probs=84.0

Q ss_pred             CCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE--EEEEe-CC---CeEE
Q 010883          186 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-SD---DCIY  259 (498)
Q Consensus       186 p~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~--l~~g~-~d---g~i~  259 (498)
                      |...+++....++-+.+||+.......... .... .+           .-...+.+  .|+.  |++++ .+   ..|+
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-Gr~N-NV-----------Dvrygf~l--~g~~vDlavas~R~~g~n~l~  130 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPV-GRPN-NV-----------DVRYGFPL--NGKTVDLAVASDRSDGRNSLR  130 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE-S-S-EE-EE-----------EEEEEEEE--TTEEEEEEEEEE-CCCT-EEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeecC-CCcc-ee-----------eeecceec--CCceEEEEEEecCcCCCCeEE
Confidence            345677777888899999998776544321 1100 00           01222233  3432  44444 22   4689


Q ss_pred             EEECC--CCeeeEEEec-------cCCCeeEEEEe--CCCCC-EEEEeeCCCeEEEEcCcccc---CCCceeEEeccccc
Q 010883          260 VYDLE--ANKLSLRILA-------HTSDVNTVCFG--DESGH-LIYSGSDDNLCKVWDRRCLN---VKGKPAGVLMGHLE  324 (498)
Q Consensus       260 vwd~~--~~~~~~~~~~-------~~~~v~~~~~~--~~~~~-~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~  324 (498)
                      +|.+.  ++.+ ..+..       ....+..+|+.  +.++. +++....+|.+..|.+....   ...+.++.+.. ..
T Consensus       131 ~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~s  208 (381)
T PF02333_consen  131 LFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GS  208 (381)
T ss_dssp             EEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS
T ss_pred             EEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CC
Confidence            99775  3332 23221       12345666653  33444 66777889998888775221   12345666654 34


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          325 GITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .+..|........|+.+-.+.-|.-|+.+.
T Consensus       209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep  238 (381)
T PF02333_consen  209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEP  238 (381)
T ss_dssp             -EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred             cceEEEEecccCCEEEecCccEEEEEecCC
Confidence            788888988888999998887677776653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.91  E-value=28  Score=32.84  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=15.6

Q ss_pred             CCCCEEEEEECC-----------CeEEEEECCCC
Q 010883          141 ADGSLFVAGFQA-----------SQIRIYDVERG  163 (498)
Q Consensus       141 ~dg~~la~~~~d-----------g~i~vw~~~~~  163 (498)
                      -++++.+.|+.+           ..+..||..++
T Consensus        62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~   95 (346)
T TIGR03547        62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN   95 (346)
T ss_pred             ECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence            367777777753           24777888765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.47  E-value=4.9  Score=23.75  Aligned_cols=40  Identities=23%  Similarity=0.229  Sum_probs=27.0

Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          244 TDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       244 ~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      |++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5677666655 4789999999998887777542 33344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK13615 lipoprotein LpqB; Provisional

Probab=86.14  E-value=40  Score=33.97  Aligned_cols=151  Identities=14%  Similarity=0.070  Sum_probs=86.2

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC-Cceecc
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESL  213 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~-~~~~~~  213 (498)
                      .+++.|++|..+|....++.+.++.....  ....  ...  ..++.-.|.+++ .+-++-.....++..... +.....
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~--~~~~--~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v  409 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDRD--AVLL--DTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPV  409 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCCc--ceee--ccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEe
Confidence            78899999999998877888888876632  1111  111  146667788877 555554433455544332 332111


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCC-Ce---ee----EEEeccCCCeeEE
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEA-NK---LS----LRILAHTSDVNTV  282 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~-~~---~~----~~~~~~~~~v~~~  282 (498)
                       ...-             .-...|..+..|+||..++.-..   .+.|++--+.. +.   .+    ..+......+.++
T Consensus       410 -~v~~-------------~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl  475 (557)
T PRK13615        410 -AVSW-------------TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDA  475 (557)
T ss_pred             -eccc-------------cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceee
Confidence             1111             01237999999999988776543   35566643322 22   12    1122223488999


Q ss_pred             EEeCCCCCEEEEee---CCCeEEEEcCc
Q 010883          283 CFGDESGHLIYSGS---DDNLCKVWDRR  307 (498)
Q Consensus       283 ~~~~~~~~~l~s~s---~dg~i~vwd~~  307 (498)
                      .|. .+..+++.+.   .+..+++..+.
T Consensus       476 ~W~-~~~~laVl~~~~~~~~~v~~v~v~  502 (557)
T PRK13615        476 TWV-DELDVATLTLAPDGERQVELHQVG  502 (557)
T ss_pred             EEc-CCCEEEEEeccCCCCceEEEEECC
Confidence            997 6666655542   23456666654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.93  E-value=4  Score=41.40  Aligned_cols=74  Identities=14%  Similarity=0.133  Sum_probs=45.0

Q ss_pred             CCCCEEEEEECCCeEEEEECCC----CeEEEEEeecC-------------------CCceeEEEEEeCC----CCCeEEE
Q 010883          141 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAK-------------------SLRWTVTDTSLSP----DQRHLVY  193 (498)
Q Consensus       141 ~dg~~la~~~~dg~i~vw~~~~----~~~~~~~~~~~-------------------~~~~~v~~~~~sp----~~~~l~~  193 (498)
                      ++...|+.+..||.+.......    +..........                   .....+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667788888999888777664    21222111110                   1123456677777    7789999


Q ss_pred             EECCCeEEEEECCCCceeccc
Q 010883          194 ASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       194 ~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      .+.|+.+++||+.++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999885443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.66  E-value=2.6  Score=24.63  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=20.0

Q ss_pred             CCCCceEEEEEcCCCCEEEEEEC-C--CeEEEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY  158 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~-d--g~i~vw  158 (498)
                      ..........|||||+.|+-++. +  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34556788999999998886654 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.47  E-value=14  Score=32.59  Aligned_cols=128  Identities=18%  Similarity=0.182  Sum_probs=67.4

Q ss_pred             EEcCCCCEEEEEEC-C--CeEEEEECCC---CeEEEEE-eecCCCceeEEEEEeCCCCCeEEEEECCC-eEEEEECCCC-
Q 010883          138 QFSADGSLFVAGFQ-A--SQIRIYDVER---GWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSG-  208 (498)
Q Consensus       138 ~~s~dg~~la~~~~-d--g~i~vw~~~~---~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~s~d~-~i~iwd~~~~-  208 (498)
                      +|-+||++|.+|+. +  ..+++++...   ....... ......++-.+ ...-|||+.|+.|+... +..+|.-... 
T Consensus        73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~t~E~~P~~~~~  151 (243)
T PF07250_consen   73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNPTYEFWPPKGPG  151 (243)
T ss_pred             CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc-ceECCCCCEEEEeCcCCCcccccCCccCC
Confidence            68899999999875 2  3588888654   1111111 11222333332 33457999999988763 3444443211 


Q ss_pred             -ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883          209 -TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  277 (498)
Q Consensus       209 -~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  277 (498)
                       ..............         ....----+...|+|+.++.+..+  -.|||..+++.++.+..-.+
T Consensus       152 ~~~~~~~~l~~~~~~---------~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  152 PGPVTLPFLSQTSDT---------LPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             CCceeeecchhhhcc---------CccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCCCCC
Confidence             11111000000000         000012245677999988888765  44578888877676654433

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.15  E-value=6.8  Score=32.64  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=25.0

Q ss_pred             cEEEEEEcCCC------CEEEEEeCCCeEEEEECCC
Q 010883          236 GIFSLKFSTDG------RELVAGSSDDCIYVYDLEA  265 (498)
Q Consensus       236 ~i~~~~~s~~g------~~l~~g~~dg~i~vwd~~~  265 (498)
                      .+..++|||.|      ..|++.+.++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999954      3788889999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.01  E-value=4.6  Score=23.57  Aligned_cols=32  Identities=16%  Similarity=0.277  Sum_probs=20.4

Q ss_pred             eccCCCCeeeeEEcCCCCeEEEEe-CC--CcEEEe
Q 010883          443 LKYHTSPVRDCSWHPSQPMLVSSS-WD--GDVVRW  474 (498)
Q Consensus       443 ~~~h~~~v~~l~~sp~~~~l~s~~-~D--g~i~iw  474 (498)
                      +......-....|+|||+.|+-++ .+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            333455677889999999666554 45  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.99  E-value=34  Score=32.01  Aligned_cols=157  Identities=15%  Similarity=0.208  Sum_probs=83.0

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCe------EEEEECCC--Cce--eccccccccc--cCccccccCCCCceecEEEEEEcC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPI------VHIVDVGS--GTM--ESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFST  244 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~------i~iwd~~~--~~~--~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~  244 (498)
                      +.+..+.+.|++..+++.+.++.      +...++..  +..  ..........  .+..+.     .-.....+|++.+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~-----~~~~D~Egi~~~~   94 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFP-----KNGLDPEGIAVPP   94 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCC-----cCCCChhHeEEec
Confidence            35788888876666666677776      55555443  100  0000000000  011110     0111455788877


Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCeeeEEEe---------------ccCCCeeEEEEeCCCCCEEEEeeC-----C
Q 010883          245 DGRELVAGSSD------DCIYVYDLEANKLSLRIL---------------AHTSDVNTVCFGDESGHLIYSGSD-----D  298 (498)
Q Consensus       245 ~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~s~s~-----d  298 (498)
                      +|.++++.-.+      ..|+.++.. ++....+.               .......+|+++ ++++.|+++..     |
T Consensus        95 ~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d  172 (326)
T PF13449_consen   95 DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQD  172 (326)
T ss_pred             CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCC
Confidence            88877776666      788888876 55544331               234567889998 77775655543     2


Q ss_pred             C---------eEEEEcCcccc---CCCceeEEecc-----ccccEEEEEEcCCCCEEEE
Q 010883          299 N---------LCKVWDRRCLN---VKGKPAGVLMG-----HLEGITFIDSRGDGRYLIS  340 (498)
Q Consensus       299 g---------~i~vwd~~~~~---~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~s  340 (498)
                      +         .++++......   ........+..     ....|..+.+-+++++|+.
T Consensus       173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            2         14554443111   01111222221     3456888888888886653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.62  E-value=5.4  Score=37.82  Aligned_cols=163  Identities=13%  Similarity=0.154  Sum_probs=93.5

Q ss_pred             ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEE-EEEEcCCCCEEEEEeC
Q 010883          176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSS  254 (498)
Q Consensus       176 ~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~s~~g~~l~~g~~  254 (498)
                      ...|..+-..|||+.|..-+. .++.++++.+...... +..+...+       +..|  .|+ .+..-..|.-+++++.
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg-------~~~~--~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPG-------DSRH--QVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCC-------chHH--HHHHHHHHHhCceeEEEEcC
Confidence            346788889999998877655 6788888876544322 21111100       0001  122 1222335566888889


Q ss_pred             CCeEEEE-ECCCCee-----eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEE
Q 010883          255 DDCIYVY-DLEANKL-----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF  328 (498)
Q Consensus       255 dg~i~vw-d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~  328 (498)
                      ||.|.-| |+..+..     ++.+.-....+..+.- ..+.+-+++-+..|++.++...    ..+.+ .+..-...+.-
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st----~~~~l-L~~~~~~~~~~  362 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYST----SEKLL-LFERAYQAPQL  362 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecc----cCcce-ehhhhhcCcce
Confidence            9988877 4443221     1111112233333332 2345567777888888887653    22222 22223346677


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          329 IDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      ++++|++.++++-. .|.++++.+++..
T Consensus       363 ~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         363 VAMSPNQAYLLSED-QGKIRLAQLENRN  389 (733)
T ss_pred             eeeCcccchheeec-CCceEEEEecCCC
Confidence            89999999888653 4679999888744

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.33  E-value=52  Score=33.68  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC------eEEEEEC-CC---eE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR------HLVYASM-SP---IV  200 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~------~l~~~s~-d~---~i  200 (498)
                      .+.|-.+.|.++++.+++...+|.|.+||...+...........+...+.--.|.++..      ++++.+. ++   ..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE


Q ss_pred             EEEEC--CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883          201 HIVDV--GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD  278 (498)
Q Consensus       201 ~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  278 (498)
                      +++.+  .+.....+........              ......|.-+...|..- .++.|.+|++..-+...++ .-..-
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~--------------~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI-~l~~i  272 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENF--------------GLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTI-SLPSI  272 (670)
T ss_pred             EEEEeccCCcceEEeehheeccC--------------CcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEE-Eechh


Q ss_pred             eeEE-----EEeCCCCCEEEEeeCCCeEEEEcC
Q 010883          279 VNTV-----CFGDESGHLIYSGSDDNLCKVWDR  306 (498)
Q Consensus       279 v~~~-----~~~~~~~~~l~s~s~dg~i~vwd~  306 (498)
                      |..-     .+.|+..+.++-+..+ .|++.|+
T Consensus       273 i~~~~~~~vSl~~~s~nRvLLs~~n-kIyLld~  304 (670)
T PF10395_consen  273 IDKESDDLVSLKPPSPNRVLLSVNN-KIYLLDL  304 (670)
T ss_pred             hccccccceEeecCCCCeEEEEcCC-EEEEEee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.80  E-value=46  Score=32.63  Aligned_cols=96  Identities=10%  Similarity=0.089  Sum_probs=53.3

Q ss_pred             ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883          235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK  314 (498)
Q Consensus       235 ~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  314 (498)
                      ..|..+..++.|..++..+.+|.+.++=.+....-..+......|+|=.+. -+.+ |++.+.                 
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~-i~~~-~ftss~-----------------  164 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP-VAER-FFTSST-----------------  164 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeec-ccce-eeccCC-----------------
Confidence            378889999999999999999855444322221222233333345555542 2222 222211                 


Q ss_pred             eeEEeccccccEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCCC
Q 010883          315 PAGVLMGHLEGITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                              .-.+...+|+|+.   .+|..-+.|..|++||+.....
T Consensus       165 --------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  165 --------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             --------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence                    0123345566654   4566667777888888776443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.72  E-value=32  Score=30.70  Aligned_cols=202  Identities=13%  Similarity=0.048  Sum_probs=118.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      .+.-+.++-+|||..-.++...+.|--.|-.+|+...-.+...   .....|..-|||..-++-+.. -|.-.|-++.+.
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---a~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev  136 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---ASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV  136 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC---CCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence            4556788999999998888888888888888885444333222   245667788888766654333 444455555444


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG  289 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~  289 (498)
                      ....- +..+            -........|.+.|++-+++.. |.---.|-.++. +..+. ........|+.. +++
T Consensus       137 t~f~l-p~~~------------a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~-i~vfpaPqG~gpyGi~at-pdG  200 (353)
T COG4257         137 TRFPL-PLEH------------ADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNV-ISVFPAPQGGGPYGICAT-PDG  200 (353)
T ss_pred             EEeec-cccc------------CCCcccceeeCCCccEEEeecc-ccceecCcccCc-eeeeccCCCCCCcceEEC-CCC
Confidence            32221 1111            1125677889999987777642 211111222211 12222 122345667776 788


Q ss_pred             CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      ..-++.-.+..|-..|....  ..+.+..-......-..+..+|.++.-++-...+.+..+|...
T Consensus       201 svwyaslagnaiaridp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         201 SVWYASLAGNAIARIDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             cEEEEeccccceEEcccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            88888777788888776522  1111111122233445666678888888877777888887655

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.46  E-value=35  Score=30.99  Aligned_cols=118  Identities=20%  Similarity=0.219  Sum_probs=67.2

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE------CCCeEEEEECCCCceeccccccccccCcccc
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANVTEIHDGLDFS  226 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (498)
                      ..|.+||..+. ....  ...+..+.|+++.|..+.++++.|.      ....+..||..+...........        
T Consensus        16 ~~lC~yd~~~~-qW~~--~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s--------   84 (281)
T PF12768_consen   16 PGLCLYDTDNS-QWSS--PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS--------   84 (281)
T ss_pred             CEEEEEECCCC-Eeec--CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--------
Confidence            46999998875 2222  3344778999999997777777664      34578899998876543332110        


Q ss_pred             ccCCCCceecEEEEEEcC-CCC-EEEEEe-CCC--eEEEEECCCCeeeEE-EeccCCCeeEEEEe
Q 010883          227 AADDGGYSFGIFSLKFST-DGR-ELVAGS-SDD--CIYVYDLEANKLSLR-ILAHTSDVNTVCFG  285 (498)
Q Consensus       227 ~~~~~~h~~~i~~~~~s~-~g~-~l~~g~-~dg--~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~  285 (498)
                          ..-.++|..+.+.. |+. ..++|. .+|  .|..||=.+...+.. .......|..+.+-
T Consensus        85 ----~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   85 ----NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             ----ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence                01123677777743 343 444443 233  466666544443333 22234456666554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.14  E-value=7  Score=39.67  Aligned_cols=87  Identities=23%  Similarity=0.185  Sum_probs=45.4

Q ss_pred             CCCCeEEEEECCCeEEEEECCC----Cceecccccccc-----ccCc-cccccCCCCceecEEEEEEcC----CCCEEEE
Q 010883          186 PDQRHLVYASMSPIVHIVDVGS----GTMESLANVTEI-----HDGL-DFSAADDGGYSFGIFSLKFST----DGRELVA  251 (498)
Q Consensus       186 p~~~~l~~~s~d~~i~iwd~~~----~~~~~~~~~~~~-----~~~~-~~~~~~~~~h~~~i~~~~~s~----~g~~l~~  251 (498)
                      ++...++.+..||.+.......    +...........     ..++ .........-...+..++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4777888888999888877654    111111110000     0000 000000111123455566655    6779999


Q ss_pred             EeCCCeEEEEECCCCeeeEEE
Q 010883          252 GSSDDCIYVYDLEANKLSLRI  272 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~  272 (498)
                      .+.|+.+++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=82.69  E-value=47  Score=31.97  Aligned_cols=251  Identities=11%  Similarity=0.027  Sum_probs=0.0

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  212 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~  212 (498)
                      +..++.|.  ++...+.+..| +.+...+.|+.................+....++...+++ ..|.|..-+-.......
T Consensus       138 ~l~~v~f~--~~~g~~vG~~G-~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg-~~G~v~~S~D~G~tW~~  213 (398)
T PLN00033        138 RFNSISFK--GKEGWIIGKPA-ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVT-DEGAIYVTSNAGRNWKA  213 (398)
T ss_pred             ceeeeEEE--CCEEEEEcCce-EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEe-ccceEEEECCCCCCceE


Q ss_pred             ccccccc---ccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCC
Q 010883          213 LANVTEI---HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  289 (498)
Q Consensus       213 ~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  289 (498)
                      .......   .............+.+....+..+++|.+++++.....++-||-........-......+..+.+. +++
T Consensus       214 ~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~-~dg  292 (398)
T PLN00033        214 AVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWR-ADG  292 (398)
T ss_pred             cccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEc-CCC


Q ss_pred             CEEEEeeCCCeEEEEcCccccCCCceeEEecccccc-----EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-----ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      .+++++..-+.+.--|-.    .......+......     +..+.+.+++..+++|...-.++--|--.          
T Consensus       293 ~l~l~g~~G~l~~S~d~G----~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~----------  358 (398)
T PLN00033        293 GLWLLTRGGGLYVSKGTG----LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGK----------  358 (398)
T ss_pred             CEEEEeCCceEEEecCCC----CcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCc----------


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY  432 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  432 (498)
                                                   ++........+..-.+.+.|.++++.+++| .+|.|.-|
T Consensus       359 -----------------------------tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        359 -----------------------------SWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             -----------------------------ceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe

>smart00564 PQQ beta-propeller repeat

Probab=82.54  E-value=3.7  Score=22.76  Aligned_cols=26  Identities=31%  Similarity=0.528  Sum_probs=21.7

Q ss_pred             cEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          418 KYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       418 ~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                      ..+++++.+|.++.+|..+|+.+..+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            35788889999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=82.17  E-value=41  Score=30.92  Aligned_cols=127  Identities=19%  Similarity=0.265  Sum_probs=80.9

Q ss_pred             EEEEEeCCCCCeEEEE------------------ECCCeEEEEECCCCceeccccccccccCcccc-----c------cC
Q 010883          179 VTDTSLSPDQRHLVYA------------------SMSPIVHIVDVGSGTMESLANVTEIHDGLDFS-----A------AD  229 (498)
Q Consensus       179 v~~~~~sp~~~~l~~~------------------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~------~~  229 (498)
                      ...+.+.++|..|++.                  -.|+.+.-.|+++++.+.............+.     .      ..
T Consensus        59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~  138 (299)
T PF14269_consen   59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS  138 (299)
T ss_pred             ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence            4445567777776632                  12456777788888876655544332222111     0      01


Q ss_pred             CCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC-C----eeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883          230 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-D----VNTVCFGDESGHLIYSGSDDNLCKVW  304 (498)
Q Consensus       230 ~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~----v~~~~~~~~~~~~l~s~s~dg~i~vw  304 (498)
                      ....-.-+++|...++|.+|++.-.-..|.+.|-.+++.+-.+.+... .    -...+| ..+.+++-.+..++.|.++
T Consensus       139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~-QHdar~~~~~~~~~~IslF  217 (299)
T PF14269_consen  139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSW-QHDARFLNESNDDGTISLF  217 (299)
T ss_pred             CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEee-ccCCEEeccCCCCCEEEEE
Confidence            112234588889999999999998889999999999999888865421 1    112444 2555666566778888888


Q ss_pred             cC
Q 010883          305 DR  306 (498)
Q Consensus       305 d~  306 (498)
                      |-
T Consensus       218 DN  219 (299)
T PF14269_consen  218 DN  219 (299)
T ss_pred             cC
Confidence            86

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=82.01  E-value=65  Score=33.11  Aligned_cols=69  Identities=13%  Similarity=0.014  Sum_probs=43.5

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      ...++++.-+|.|+-++.+..||.|++|+........ +..   ...+-..+.|...|  |+++..|..+--|.-
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~~---~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-ICE---EAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-hhh---hcCCccceeeeccc--eEEEeccchhheeec
Confidence            4567888889999999999999999999987542211 111   11123334454444  455555666666653

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=81.81  E-value=39  Score=30.45  Aligned_cols=113  Identities=13%  Similarity=0.063  Sum_probs=73.0

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec--cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883          236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG  313 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  313 (498)
                      -+..+.++.  ++...+..+.-++|.|+.+......+..  ..+.-.++..   .+++.+.+..|.-+.+.|+.... ..
T Consensus        88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps-sP  161 (370)
T COG5276          88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS-SP  161 (370)
T ss_pred             hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC-Cc
Confidence            456677764  4666666777799999988765443322  1233344444   48899998877777788886332 23


Q ss_pred             ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       314 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      .....+......-..++.+  |++-..+..|+-+.+-|+....
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~  202 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH  202 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC
Confidence            3334444444444566665  5677777889999999998744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	498
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-20
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		9e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-09
2h9l_A	329	Wdr5delta23 Length = 329		3e-20
2h9l_A	329	Wdr5delta23 Length = 329		9e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-09
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-09
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		8e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		8e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-07
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		6e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		6e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		7e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 54  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 110
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 111 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 210
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 211 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 247
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 248 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 289
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 290 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 326

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 39  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 93
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 94  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 123
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 124 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 201

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 52  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 108
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 109 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 208
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 209 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 245
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 246 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 287
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 288 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 324

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 37  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 91
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 92  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 121
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 122 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 199

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    A      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 226
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFSV---TGGKWIVSGSEDNLVYIWN 268
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + + S D L K+W        GK    + GH  GI+
Sbjct: 18  LKFTLAGHTKAVSSVKFS-PNGEWLAASSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 36  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 93  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 229
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 230 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 271
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 21  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 36  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 93  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 229
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 230 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 271
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 21  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 26  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 82
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 83  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 182
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 183 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 219
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 220 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 261
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 262 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 298

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 11  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 65
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 66  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 95
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 96  ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 173

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 36  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 93  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 229
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 230 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 271
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 21  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 47  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 103
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 104 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 203
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 204 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 240
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 241 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 282
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 283 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 319

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 32  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 86
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 87  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 116
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 117 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 194

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 31  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 87
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 88  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 187
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 188 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 224
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 225 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 266
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 267 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 303

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 16  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 70
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 71  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 100
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 101 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 178

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 30  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 87  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 186
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 187 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 223
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 224 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 265
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 15  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 69
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 99
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 100 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 177

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 35  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 91
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 92  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 191
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 192 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 228
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 229 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 270
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 271 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 307

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 20  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 74
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 75  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 104
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 105 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 182

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 30  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 87  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 186
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 187 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 223
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 224 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 265
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 15  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 69
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 99
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 100 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 177

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 29  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 85
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 86  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 185
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 186 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 222
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 223 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 264
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 265 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 301

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 14  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 68
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 69  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 98
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 99  ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 176

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 226
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFSV---TGGKWIVSGSEDNLVYIWN 268
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 18  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++  K    + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 226
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFSV---TGGKWIVSGSEDNLVYIWN 268
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 18  LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G+ +  L  H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++       + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 226
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNMVYIWN 268
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 18  LMFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G  +  L  H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 68/337 (20%)
Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +FS +G    +      I+I+    G K +K I    L   ++D + S D   LV AS  
Sbjct: 33  KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 198 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256
             + I DV SG  +++L                  G+S  +F   F+     +V+GS D+
Sbjct: 90  KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 313
            + ++D++       + AH+  V+ V F +  G LI S S D LC++WD    +CL    
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
               ++      ++F+    +G+Y+++   D  +KLWD  K                   
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK------------------- 226
Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                           + + TY GH   +  I  +FS    TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNMVYIWN 268
Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
           L + E V  L+ HT  V   + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327
           L   +  HT  V++V F   +G  + S S D L K+W        GK    + GH  GI+
Sbjct: 18  LMFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387
            +    D   L+S   D+ +K+WD+    S+  C                          
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447
               + T KGHS    +  C+F+P        I +GS D  V ++D+ +G  +  L  H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
            PV    ++    ++VSSS+DG    W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 145/356 (40%), Gaps = 61/356 (17%)
Query: 139 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198
           FS DG    +      +++++   G  +Q      S  W V   + SPD + +  AS   
Sbjct: 106 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPDGQTIASASDDK 161
Query: 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 258
            V + +     +++L                  G+S  ++ + FS DG+ + + S D  +
Sbjct: 162 TVKLWNRNGQLLQTLT-----------------GHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 259 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 318
            +++     L   +  H+S V  V F  + G  I S SDD   K+W+R      G+    
Sbjct: 205 KLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQT 257
Query: 319 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD-----IRKMSSNASCNLGFRSYEWDYR 373
           L GH   +  +  R DG+ + S   D+ +KLW+     ++ ++ ++S   G         
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG--------- 308
Query: 374 WMDYPPQARDLKHPCD-----------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422
            + + P  + +    D           Q + T  GHS   ++    FSP   T    I +
Sbjct: 309 -VAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHS--SSVWGVAFSPDGQT----IAS 361
Query: 423 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478
            S D  V +++  +G+ +  L  H+S VR  ++ P    + S+S D  V  W   G
Sbjct: 362 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 28/257 (10%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+S  ++ + FS DG+ + + S D  + +++     L   +  H+S V  V F  + G  
Sbjct: 55  GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQT 112
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351
           I S SDD   K+W+R      G+    L GH   +  +    DG+ + S   D+ +KLW+
Sbjct: 113 IASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 352 -----IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLI 405
                ++ ++ ++S   G          + + P  + +     D++V  +  +  L   +
Sbjct: 168 RNGQLLQTLTGHSSSVWG----------VAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 217
Query: 406 RCHFSPV----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 461
             H S V    +S   + I + S D  V +++  +G+ +  L  H+S V   ++ P    
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 462 LVSSSWDGDVVRWEFPG 478
           + S+S D  V  W   G
Sbjct: 277 IASASDDKTVKLWNRNG 293

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 28/236 (11%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           I S+ FS DG+ L  G+ D  I ++D+E  K+ + +  H  D+ ++ +   SG  + SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGS 184
Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWD---- 351
            D   ++WD R          + +   +G+T +  S GDG+Y+ +   D+A+++WD    
Sbjct: 185 GDRTVRIWDLRT-----GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 352 --IRKMSSNASCNLGFRSYEWDYRW-----------MDYPPQARDLKHPCDQSVATYKGH 398
             + ++ S      G +   +   +           +D   +  +L++  ++S +     
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 399 SVLRTLIRCH----FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 450
                    H     S   +   +YI +GS D  V  +D  SG  +  L+ H + V
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 117/279 (41%), Gaps = 44/279 (15%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           IF   FS     +V+ S D  I V+D E       +  HT  V  + F D SG L+ S S
Sbjct: 115 IFHPVFSV----MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCS 169
Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356
            D   K+WD +           + GH   ++ +    +G +++S  +D+ IK+W+++   
Sbjct: 170 ADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ--- 222
Query: 357 SNASCNLGFRSY-EWDYRWMDYPPQARDLKHPC--DQS-----VATYKGHSVLRT---LI 405
               C   F  + EW    M  P Q   L   C  DQ+     VAT +  + LR    ++
Sbjct: 223 -TGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 406 RC--------HFSPVYSTGQK---------YIYTGSHDSCVYVYDLVSGEQVAALKYHTS 448
            C        + S   +TG +         ++ +GS D  + ++D+ +G  +  L  H +
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339
Query: 449 PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 487
            VR   +H     ++S + D  +  W++  N      LN
Sbjct: 340 WVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLN 377

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
Query: 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 185
           PVD     A+   FS D      G    ++ I+ VE G   +K+    +    +   + S
Sbjct: 122 PVD-----AWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYS 173
Query: 186 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 245
           PD ++L   ++  I++I D+ +G    L +  E             G++  I SL FS D
Sbjct: 174 PDGKYLASGAIDGIINIFDIATG---KLLHTLE-------------GHAMPIRSLTFSPD 217
Query: 246 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305
            + LV  S D  I +YD++   L+  +  H S V  V F  +  H + S S D   KVWD
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWD 276
Query: 306 ---RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351
              R C++           H + +  +   G+G  ++S G DQ I ++D
Sbjct: 277 VGTRTCVH-------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 274 AHTSDVNTVCFG---DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330
           AH   + +V +G    E+   + +GS D+L KVW  R   +  + +  L GH  G+  +D
Sbjct: 30  AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS--LEGHQLGVVSVD 87
Query: 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390
                    S+  D  I+LWD+       S + G      D   + + P ++ L      
Sbjct: 88  ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG----PVDAWTLAFSPDSQYLATGTHV 143
Query: 391 S------VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 444
                  V + K    L T  +   S  YS   KY+ +G+ D  + ++D+ +G+ +  L+
Sbjct: 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 445 YHTSPVRDCSWHPSQPMLVSSSWDG 469
            H  P+R  ++ P   +LV++S DG
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDG 228

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 47/280 (16%)
Query: 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282
           LD  A +D      +    FS+D   +   S+D  + ++D    KL      H+  VN  
Sbjct: 651 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 283 CFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 341
            F ++S HL+  +GS+D   K+WD   LN K +    + GH   +       D   L S 
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDELLASC 761
Query: 342 GKDQAIKLWDIRKMSSNASCNLG--FRSYEWDYRWMDYPPQARDLKHPC-------DQSV 392
             D  ++LWD+R  +   S N+   F S E        PP+  ++   C       D+ +
Sbjct: 762 SADGTLRLWDVRSANERKSINVKRFFLSSE-------DPPEDVEVIVKCCSWSADGDKII 814
Query: 393 ATYKGHSVL-----------------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435
              K   +L                  T+  C FSP                CV ++++ 
Sbjct: 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNID 870
Query: 436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
           S  +VA  + H S V    + P     +++S D  +  WE
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 49/229 (21%)
Query: 270 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329
           L +  HT  V   CF  +   +   G+D  L +V+        G+    +  H + +   
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTL-QVFKAE----TGEKLLDIKAHEDEVLCC 663
Query: 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389
               D  Y+ +   D+ +K+WD      +A+  L                          
Sbjct: 664 AFSSDDSYIATCSADKKVKIWD------SATGKL-------------------------- 691
Query: 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 449
             V TY  HS    +  CHF+    +    + TGS+D  + ++DL   E    +  HT+ 
Sbjct: 692 --VHTYDEHS--EQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745
Query: 450 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 498
           V  C + P   +L S S DG +  W+     E      +K I  ++F+L
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANE------RKSINVKRFFL 788

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 47/280 (16%)
Query: 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282
           LD  A +D      +    FS+D   +   S+D  + ++D    KL      H+  VN  
Sbjct: 658 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 283 CFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 341
            F ++S HL+  +GS+D   K+WD   LN K +    + GH   +       D   L S 
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDELLASC 768
Query: 342 GKDQAIKLWDIRKMSSNASCNLG--FRSYEWDYRWMDYPPQARDLKHPC-------DQSV 392
             D  ++LWD+R  +   S N+   F S E        PP+  ++   C       D+ +
Sbjct: 769 SADGTLRLWDVRSANERKSINVKRFFLSSE-------DPPEDVEVIVKCCSWSADGDKII 821
Query: 393 ATYKGHSVL-----------------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435
              K   +L                  T+  C FSP                CV ++++ 
Sbjct: 822 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNID 877
Query: 436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
           S  +VA  + H S V    + P     +++S D  +  WE
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 49/229 (21%)
Query: 270 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329
           L +  HT  V   CF  +   +   G+D  L +V+        G+    +  H + +   
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTL-QVFKAE----TGEKLLDIKAHEDEVLCC 670
Query: 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389
               D  Y+ +   D+ +K+WD      +A+  L                          
Sbjct: 671 AFSSDDSYIATCSADKKVKIWD------SATGKL-------------------------- 698
Query: 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 449
             V TY  HS    +  CHF+    +    + TGS+D  + ++DL   E    +  HT+ 
Sbjct: 699 --VHTYDEHS--EQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 752
Query: 450 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 498
           V  C + P   +L S S DG +  W+     E      +K I  ++F+L
Sbjct: 753 VNHCRFSPDDELLASCSADGTLRLWDVRSANE------RKSINVKRFFL 795

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 43/257 (16%)
Query: 249 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 308
           ++ G+ D  I VYD    K  L++  H   V  + +    G ++ SGS D   +VWD + 
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK- 191
Query: 309 LNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366
              KG    V  GH   +  +D     + +Y+++  +D  + +W + K SS         
Sbjct: 192 ---KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-----H 243
Query: 367 SYEWDYRWMDYPPQAR----DLKHPCDQSVATYKGHSVL-------RTLI-------RCH 408
             E DY  + + P+       +      SV T  GH  +        TLI       +C 
Sbjct: 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL 303
Query: 409 F----------SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 458
           +          S +Y   +K   + S D+ + ++DL +GE +  L+ HT+ V       S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL--RLS 361
Query: 459 QPMLVSSSWDGDVVRWE 475
              LVS++ DG +  W+
Sbjct: 362 DKFLVSAAADGSIRGWD 378

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 43/257 (16%)
Query: 249 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 308
           ++ G+ D  I VYD    K  L++  H   V  + +    G ++ SGS D   +VWD + 
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK- 191
Query: 309 LNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366
              KG    V  GH   +  +D     + +Y+++  +D  + +W + K SS         
Sbjct: 192 ---KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-----H 243
Query: 367 SYEWDYRWMDYPPQAR----DLKHPCDQSVATYKGHSVL-------RTLI-------RCH 408
             E DY  + + P+       +      SV T  GH  +        TLI       +C 
Sbjct: 244 GEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCL 303
Query: 409 F----------SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 458
           +          S +Y   +K   + S D+ + ++DL +GE    L+ HT+ V       S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL--RLS 361
Query: 459 QPMLVSSSWDGDVVRWE 475
              LVS++ DG +  W+
Sbjct: 362 DKFLVSAAADGSIRGWD 378

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 235
           V   SL+PD R  V              SG  ++ A + ++ +G+    F+     G+  
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 290
            I ++ F  +G     GS D    ++DL A++    ++ ++ D     + +V F  +SG 
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
           L+ +G DD  C VWD     +K   AGVL GH   ++ +    DG  + +   D  +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 351 D 351
           +
Sbjct: 340 N 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           + SL  + D R  V+G+ D    ++D+           H SD+N +CF   +G+   +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353
           DD  C+++D     ++     +   H   + GIT +     GR L++   D    +WD  
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 354 K 354
           K
Sbjct: 301 K 301

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 292
           + +  ++  G  +  G  D+   +Y+L+  + ++R+      HT  ++   F D+  + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352
            + S D  C +WD       G+      GH   +  +    D R  +S   D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 400
           R+      C   F  +E D   + + P              R      DQ + TY   ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 401 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 459
           +     C  + V +S   + +  G  D    V+D +  ++   L  H + V         
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 460 PMLVSSSWDGDVVRWE 475
             + + SWD  +  W 
Sbjct: 325 MAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 235
           V   SL+PD R  V              SG  ++ A + ++ +G+    F+     G+  
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 290
            I ++ F  +G     GS D    ++DL A++    ++ ++ D     + +V F  +SG 
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
           L+ +G DD  C VWD     +K   AGVL GH   ++ +    DG  + +   D  +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 351 D 351
           +
Sbjct: 340 N 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           + SL  + D R  V+G+ D    ++D+           H SD+N +CF   +G+   +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353
           DD  C+++D     ++     +   H   + GIT +     GR L++   D    +WD  
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 354 K 354
           K
Sbjct: 301 K 301

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 292
           + +  ++  G  +  G  D+   +Y+L+  + ++R+      HT  ++   F D+  + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352
            + S D  C +WD       G+      GH   +  +    D R  +S   D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 400
           R+      C   F  +E D   + + P              R      DQ + TY   ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 401 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 459
           +     C  + V +S   + +  G  D    V+D +  ++   L  H + V         
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 460 PMLVSSSWDGDVVRWE 475
             + + SWD  +  W 
Sbjct: 325 MAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 235
           V   SL+PD R  V              SG  ++ A + ++ +G+    F+     G+  
Sbjct: 198 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 238
Query: 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 290
            I ++ F  +G     GS D    ++DL A++    ++ ++ D     + +V F  +SG 
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 294
Query: 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
           L+ +G DD  C VWD     +K   AGVL GH   ++ +    DG  + +   D  +K+W
Sbjct: 295 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Query: 351 D 351
           +
Sbjct: 351 N 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           + SL  + D R  V+G+ D    ++D+           H SD+N +CF   +G+   +GS
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 256
Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353
           DD  C+++D     ++     +   H   + GIT +     GR L++   D    +WD  
Sbjct: 257 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 354 K 354
           K
Sbjct: 312 K 312

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 292
           + +  ++  G  +  G  D+   +Y+L+  + ++R+      HT  ++   F D+  + I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 168
Query: 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352
            + S D  C +WD       G+      GH   +  +    D R  +S   D + KLWD+
Sbjct: 169 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 400
           R+      C   F  +E D   + + P              R      DQ + TY   ++
Sbjct: 225 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 280
Query: 401 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 459
           +     C  + V +S   + +  G  D    V+D +  ++   L  H + V         
Sbjct: 281 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Query: 460 PMLVSSSWDGDVVRWE 475
             + + SWD  +  W 
Sbjct: 336 MAVATGSWDSFLKIWN 351

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 235
           V   SL+PD R  V              SG  ++ A + ++ +G+    F+     G+  
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 290
            I ++ F  +G     GS D    ++DL A++    ++ ++ D     + +V F  +SG 
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
           L+ +G DD  C VWD     +K   AGVL GH   ++ +    DG  + +   D  +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 351 D 351
           +
Sbjct: 340 N 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           + SL  + D R  V+G+ D    ++D+           H SD+N +CF   +G+   +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353
           DD  C+++D     ++     +   H   + GIT +     GR L++   D    +WD  
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 354 K 354
           K
Sbjct: 301 K 301

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 292
           + +  ++  G  +  G  D+   +Y+L+  + ++R+      HT  ++   F D+  + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352
            + S D  C +WD       G+      GH   +  +    D R  +S   D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 400
           R+      C   F  +E D   + + P              R      DQ + TY   ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 401 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 459
           +     C  + V +S   + +  G  D    V+D +  ++   L  H + V         
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 460 PMLVSSSWDGDVVRWE 475
             + + SWD  +  W 
Sbjct: 325 MAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 235
           V   SL+PD R  V              SG  ++ A + ++ +G+    F+     G+  
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 290
            I ++ F  +G     GS D    ++DL A++    ++ ++ D     + +V F  +SG 
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
           L+ +G DD  C VWD     +K   AGVL GH   ++ +    DG  + +   D  +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 351 D 351
           +
Sbjct: 340 N 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           + SL  + D R  V+G+ D    ++D+           H SD+N +CF   +G+   +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353
           DD  C+++D     ++     +   H   + GIT +     GR L++   D    +WD  
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 354 K 354
           K
Sbjct: 301 K 301

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 292
           + +  ++  G  +  G  D+   +Y+L+  + ++R+      HT  ++   F D+  + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352
            + S D  C +WD       G+      GH   +  +    D R  +S   D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 400
           R+      C   F  +E D   + + P              R      DQ + TY   ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 401 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 459
           +     C  + V +S   + +  G  D    V+D +  ++   L  H + V         
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 460 PMLVSSSWDGDVVRWE 475
             + + SWD  +  W 
Sbjct: 325 MAVATGSWDSFLKIWN 340

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 96/257 (37%), Gaps = 31/257 (12%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHTSDVNTVCFGDESGHL 291
           + +  ++  G  +  G  D+   VY L  +K        + +A  ++  + C    S   
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKL 349
           I + S D  C +WD       G+      GH   +  +D      G   +S G D+   +
Sbjct: 169 ILTASGDGTCALWDVE----SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 350 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKG 397
           WD+R    +  C   F ++E D   + Y P              R      D+ VA Y  
Sbjct: 225 WDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280
Query: 398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 457
            S++       FS       + ++ G +D  + V+D++ G +V+ L  H + V      P
Sbjct: 281 ESIIFGASSVDFS----LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP 336
Query: 458 SQPMLVSSSWDGDVVRW 474
                 S SWD  +  W
Sbjct: 337 DGTAFCSGSWDHTLRVW 353

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+S  +     + DG   ++ S D  + ++D+   +   R + H SDV +V   D+   +
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 345
           I SGS D   KVW      +KG+    L+GH + ++ +       +  D   +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 346 AIKLWDIRKMSSNA 359
            +K W++ +    A
Sbjct: 177 MVKAWNLNQFQIEA 190

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+S  +     + DG   ++ S D  + ++D+   +   R + H SDV +V   D+   +
Sbjct: 57  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 115
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 345
           I SGS D   KVW      +KG+    L+GH + ++ +       +  D   +IS G D+
Sbjct: 116 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 346 AIKLWDIRKMSSNA 359
            +K W++ +    A
Sbjct: 171 MVKAWNLNQFQIEA 184

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 40/253 (15%)
Query: 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 328
           ++++  H   +  V +  E G L++S S D+   VW     ++ G+  G L GH   I  
Sbjct: 25  AIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVW----YSLNGERLGTLDGHTGTIWS 79
Query: 329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA------- 381
           ID     +Y ++   D +IKLWD+    SN  C   ++S     + +++ P         
Sbjct: 80  IDVDCFTKYCVTGSADYSIKLWDV----SNGQCVATWKS-PVPVKRVEFSPCGNYFLAIL 134
Query: 382 -RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY----------------STGQKYIYTGS 424
              +K+P   ++   +  S    L +    P++                ST  KYI  G 
Sbjct: 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH 194
Query: 425 HDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWEFPG 478
            D  +  YD+ +  E V ++  H   + D  + P     ++SS D      DV   +   
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254
Query: 479 NGEAAPPLNKKRI 491
             E   PLN   I
Sbjct: 255 KYETDCPLNTAVI 267

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+S  +     + DG   ++ S D  + ++D+   +   R + H SDV +V   D+   +
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 345
           I SGS D   KVW      +KG+    L+GH + ++ +       +  D   +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 346 AIKLWDIRKMSSNA 359
            +K W++ +    A
Sbjct: 177 MVKAWNLNQFQIEA 190

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+S  +     + DG   ++ S D  + ++D+   +   R + H SDV +V   D+   +
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 345
           I SGS D   KVW      +KG+    L+GH + ++ +       +  D   +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 346 AIKLWDIRKMSSNA 359
            +K W++ +    A
Sbjct: 177 MVKAWNLNQFQIEA 190

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+S  +     + DG   ++ S D  + ++D+   +   R + H SDV +V   D+   +
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 345
           I SGS D   KVW      +KG+    L+GH + ++ +       +  D   +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 346 AIKLWDIRKMSSNA 359
            +K W++ +    A
Sbjct: 177 MVKAWNLNQFQIEA 190

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+S  +     + DG   ++ S D  + ++D+   +   R + H SDV +V   D+    
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI-DKKASX 121
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 345
           I SGS D   KVW      +KG+    L+GH + ++ +       +  D   +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 346 AIKLWDIRKMSSNA 359
            +K W++ +    A
Sbjct: 177 XVKAWNLNQFQIEA 190

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 290
           G++  + S+ FS+D R++V+GS D  I +++ L   K +++  +H+  V+ V F   S +
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 291 -LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 349
            +I S   D L KVW+     +K       +GH   +  +    DG    S GKD    L
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 350 WDIRK 354
           WD+ +
Sbjct: 219 WDLNE 223

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFG-DESG 289
           G++  + S+ FS+D R++V+GS D  I +++ L   K +++  +H+  V+ V F  + S 
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 349
            +I S   D L KVW+     +K       +GH   +  +    DG    S GKD    L
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Query: 350 WDIRK 354
           WD+ +
Sbjct: 242 WDLNE 246

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+S  +  +  S +G   V+ S D  + +++L+  +   + L HT DV +V F  ++  +
Sbjct: 65  GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 347
           + SG  DN  +VW     NVKG+    L    H + ++ +      D   ++S G D  +
Sbjct: 125 V-SGGRDNALRVW-----NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 348 KLWDI 352
           K+WD+
Sbjct: 179 KVWDL 183

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 28/205 (13%)
Query: 313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 372
           G P   L GH   ++ +    +G + +S   D +++LW+++    N  C   F  +  D 
Sbjct: 57  GLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ----NGQCQYKFLGHTKDV 112
Query: 373 RWMDYPPQAR--------------DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 418
             + + P  R              ++K  C  ++ +   H+   + +R  FSP  S    
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL-SRGAHTDWVSCVR--FSP--SLDAP 167
Query: 419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVR 473
            I +G  D+ V V+DL +G  V  LK HT+ V   +  P   +  SS  DG     D+ +
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 474 WEFPGNGEAAPPLNKKRIRRRQFYL 498
            E      A  P+N+      ++++
Sbjct: 228 GEALSEMAAGAPINQICFSPNRYWM 252

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 71/264 (26%)
Query: 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 188
           +T+   Y  Q+  D    V+G + + I+I+D  +     K IL      T +   L  D+
Sbjct: 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWD--KNTLECKRILTGH---TGSVLCLQYDE 183
Query: 189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 248
           R ++  S    V + DV +G M +    T IH            +   +  L+F+     
Sbjct: 184 RVIITGSSDSTVRVWDVNTGEMLN----TLIH------------HCEAVLHLRFNNG--M 225
Query: 249 LVAGSSDDCIYVYDLEA-NKLSLR--ILAHTSDVNTVCFGDE------------------ 287
           +V  S D  I V+D+ +   ++LR  ++ H + VN V F D+                  
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Query: 288 -------SGH------------LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 328
                  +GH            L+ SGS DN  ++WD  C    G    VL GH E +  
Sbjct: 286 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC----GACLRVLEGHEELVRC 341
Query: 329 IDSRGDGRYLISNGKDQAIKLWDI 352
           I  R D + ++S   D  IK+WD+
Sbjct: 342 I--RFDNKRIVSGAYDGKIKVWDL 363

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249
           ++V  ++   V++ +  SG++ +LA   E               S  + S+K+S DG  L
Sbjct: 105 NVVAVALERNVYVWNADSGSVSALAETDE---------------STYVASVKWSHDGSFL 149
Query: 250 VAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 308
             G  +  + +YD+E+ +  LR +A H + V  + +   + H++ SGS        D R 
Sbjct: 150 SVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRI 205
Query: 309 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353
            N +    G L GH   +  +  R DG  L S G D  +++WD R
Sbjct: 206 ANHQ---IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G++  ++SL+F  DG  +V+GS D  I V+D+E       +  H S  + +   D   ++
Sbjct: 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NI 331
Query: 292 IYSGSDDNLCKVWDRR---CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 348
           + SG+ D+  K+WD +   CL     P      H   +T +  + +  ++I++  D  +K
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNK----HQSAVTCL--QFNKNFVITSSDDGTVK 385
Query: 349 LWDIR 353
           LWD++
Sbjct: 386 LWDLK 390

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 23/244 (9%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           I  L+F   G  +V+GS D+ + V+     K    ++ HT  V +    D   ++I SGS
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGS 176
Query: 297 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356
            D   KVW+       G+    L GH   +  +      + ++S  +D  +++WDI    
Sbjct: 177 TDRTLKVWNAE----TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI---- 226
Query: 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY--KGHSVLRTLIRCHFSPVYS 414
               C      +    R + Y  + R +    D  V  +  +  + L TL + H + VYS
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYS 284
Query: 415 T--GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 472
                 ++ +GS D+ + V+D+ +G  +  L  H S            +LVS + D  V 
Sbjct: 285 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVSGNADSTVK 342
Query: 473 RWEF 476
            W+ 
Sbjct: 343 IWDI 346

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 249 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 301
           L++ S D  I ++D+ A     R++        HT+ V  V +      L  S +DD   
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 360
            +WD R  N   KP+  +  H   +  +       ++++ G  D+ + LWD+R +     
Sbjct: 259 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 420
                +   +  +W            P ++++    G     T  R H   +   G++  
Sbjct: 318 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 361
Query: 421 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 479
              + D    +  +  G        HT+ + D SW+P++P ++ S  + ++++ W+   N
Sbjct: 362 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 249 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 301
           L++ S D  I ++D+ A     R++        HT+ V  V +      L  S +DD   
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 360
            +WD R  N   KP+  +  H   +  +       ++++ G  D+ + LWD+R +     
Sbjct: 257 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 420
                +   +  +W            P ++++    G     T  R H   +   G++  
Sbjct: 316 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 359
Query: 421 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 479
              + D    +  +  G        HT+ + D SW+P++P ++ S  + ++++ W+   N
Sbjct: 360 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 133 RAYVSQ-----FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 187
           +A+VS+     F   G   ++  Q  Q++I+ V+ G   +  I     R TVTD ++   
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 192
Query: 188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEI-HDGLD----FSAADDGGYSFGI---FS 239
            R+++ AS+   + + + G+GT     N  E  HDG++    F   D   +        +
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 240 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD 298
           L+F T G+ ++AG     I V+++ + + ++++ +  T   N++     + + IY+G ++
Sbjct: 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 312
Query: 299 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKL 349
            +   WD R       P G  + + EG    +     G   +S+G D +IKL
Sbjct: 313 GMLAQWDLRSPEC---PVGEFLIN-EGTPINNVYFAAGALFVSSGFDTSIKL 360

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 133 RAYVSQ-----FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 187
           +A+VS+     F   G   ++  Q  Q++I+ V+ G   +  I     R TVTD ++   
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 189
Query: 188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEI-HDGLD----FSAADDGGYSFGI---FS 239
            R+++ AS+   + + + G+GT     N  E  HDG++    F   D   +        +
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 240 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD 298
           L+F T G+ ++AG     I V+++ + + ++++ +  T   N++     + + IY+G ++
Sbjct: 250 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 309
Query: 299 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKL 349
            +   WD R       P G  + + EG    +     G   +S+G D +IKL
Sbjct: 310 GMLAQWDLRSPEC---PVGEFLIN-EGTPINNVYFAAGALFVSSGFDTSIKL 357

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 249 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 301
           L++ S D  I ++D+ A     R++        HT+ V  V +      L  S +DD   
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 360
            +WD R  N   KP+  +  H   +  +       ++++ G  D+ + LWD+R +     
Sbjct: 261 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 420
                +   +  +W            P ++++    G     T  R H   +   G++  
Sbjct: 320 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 363
Query: 421 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 479
              + D    +  +  G        HT+ + D SW+P++P ++ S  + ++++ W+   N
Sbjct: 364 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 18/229 (7%)
Query: 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLS 185
           +TT++     +S DG+  V G +  ++R+++       +   L   L   R  +     +
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-------KTGALLNVLNFHRAPIVSVKWN 158
Query: 186 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 245
            D  H++   +  +  + +V SGT+     + E       +    G  S G+  +++  D
Sbjct: 159 KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDD 217
Query: 246 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305
            + ++ G     I+VY +     + +++ H   ++ + F D +  L+ S SDD   ++W 
Sbjct: 218 DKFVIPGPKG-AIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWH 275
Query: 306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354
                  G       GH + I      GD + +IS   D +++LW +++
Sbjct: 276 GG----NGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ 319

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 116/299 (38%), Gaps = 57/299 (19%)
Query: 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS---TDGRELVAGSSDDCIYV 260
           D G  T  S     ++ D      AD   +   ++S   S   T    +  G+    + +
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 261 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR----CLNV----K 312
            DL++   S  +  H  ++  V +     +++ + S D+  K+WD R    CL       
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 313 GKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 365
           GK +  +        G + G+ F     DG +L++ G D  ++LW+    SSN    L  
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTS---DGLHLLTVGTDNRMRLWN----SSNGENTL-- 281
Query: 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 425
                    ++Y     + K          KG   L+  + C  S       ++++   +
Sbjct: 282 ---------VNYGKVCNNSK----------KG---LKFTVSCGCS------SEFVFV-PY 312
Query: 426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484
            S + VY + SGEQ+  LK H   V  C +  +   L S S D +++ W  P   E  P
Sbjct: 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW-VPSLYEPVP 370

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 401 LRTLIRCHFSPV----YSTGQKYIYTGSHDSCVYVYDL-VSGEQ---VAALKYHTSPVRD 452
           L  +I  H + V    +S    Y+ T S D  V++++   SGE+   ++ L+ H+  V+ 
Sbjct: 99  LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Query: 453 CSWHPSQPMLVSSSWDGDVVRW-EFPGNGEAAPPLN 487
             WHPS+ +L SSS+D  V  W ++  + E    LN
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 47/234 (20%)
Query: 249 LVAGSSDDCIYVYDLEANKLSL-----RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 303
           +V+ S D  I ++ L  +  +      R+  H+  V  V    + G    SGS D   ++
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRL 456
Query: 304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 363
           WD       G      +GH + +  +    D R ++S  +D+ IKLW+           L
Sbjct: 457 WDLAA----GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN----------TL 502
Query: 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC-HFSPVYSTGQKYIYT 422
           G                       C  +++  +G    R  + C  FSP  +T Q  I +
Sbjct: 503 G----------------------ECKYTIS--EGGEGHRDWVSCVRFSP--NTLQPTIVS 536
Query: 423 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
            S D  V V++L + +  + L  HT  V   +  P   +  S   DG V+ W+ 
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG---DESGHLIY 293
           I S K   DG  L+ G     + ++DL A   + RI A  +     C+         + +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353
           S   D    VWD     +  +      GH +G + ID   DG  L + G D  ++ WD+R
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQ----FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 354 K 354
           +
Sbjct: 214 E 214

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 253 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 309
           + D  + ++D  +N   K S  + AHT++VN + F   S  ++ +GS D    +WD R L
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 310 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNAS 360
            +K         H + I  +  S  +   L S+G D+ + +WD+ K+    S
Sbjct: 307 KLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 253 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 309
           + D  + ++D  +N   K S  + AHT++VN + F   S  ++ +GS D    +WD R L
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 310 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361
            +K         H + I  +  S  +   L S+G D+ + +WD+ K+    S 
Sbjct: 309 KLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 253 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 309
           + D  + ++D  +N   K S  + AHT++VN + F   S  ++ +GS D    +WD R L
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 310 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361
            +K         H + I  +  S  +   L S+G D+ + +WD+ K+    S 
Sbjct: 309 KLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 35/224 (15%)
Query: 238 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------LRILAHTSDVNTVCFGDESGH 290
           FS K + D   L++GS D  + ++ L   + +         +  H   V+ +    E+  
Sbjct: 31  FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
            I S  D  L ++WD R     G      +GH   +  +    D R ++S G ++ IKLW
Sbjct: 91  AISSSWDKTL-RLWDLRT----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 351 DIRKMSSNASCNLGFRSYEWDYRWMD---YPP--QARDLKHP---------CDQSVATYK 396
           +I        C       E    W+    Y P  ++ +   P          D  +  + 
Sbjct: 146 NIL-----GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Query: 397 GHSVLRTLIRCHFSPV----YSTGQKYIYTGSHDSCVYVYDLVS 436
            +  +R   + H S V     S   KYI TG  D  + ++D+++
Sbjct: 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 241 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 300
           KF      ++ GS D  I V++    +  +   AH   + ++       +++ SGSDD  
Sbjct: 62  KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 301 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 359
            K+W+               GH   +  +  +  D     S   D+ +K+W + + + N 
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 419
           +   G    E    ++DY P                                     + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLP----------------------------------DKPY 200
Query: 420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474
           + T S D  + ++D  +   VA L+ H S V    +HP+ P+++S S DG +  W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 241 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 300
           KF      ++ GS D  I V++    +  +   AH   + ++       +++ SGSDD  
Sbjct: 62  KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 301 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 359
            K+W+               GH   +  +  +  D     S   D+ +K+W + + + N 
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 419
           +   G    E    ++DY P                                     + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLP----------------------------------DKPY 200
Query: 420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474
           + T S D  + ++D  +   VA L+ H S V    +HP+ P+++S S DG +  W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
           + ++   + G + V+GS D CI V+DL    +     AH + V  V        +  S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 297 DDNLCKVWDRRC 308
           +DN   +WD RC
Sbjct: 190 EDNRILLWDTRC 201

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	498
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.74
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.69
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.64
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.37
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.37
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.26
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.25
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.25
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.15
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.13
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.12
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.99
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.96
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.92
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.91
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.81
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.79
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.75
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.72
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.69
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.68
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.53
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.53
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.49
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.48
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.44
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.42
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.4
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.39
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.38
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.37
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.33
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.32
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.3
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.22
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.13
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.12
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.12
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.06
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.89
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.85
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.81
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.79
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.78
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.72
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.71
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.7
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.68
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.67
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.65
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.64
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.64
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.63
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.61
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.51
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.46
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.45
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.45
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.42
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.4
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.32
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.23
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.2
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.19
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.19
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.0
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.83
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.69
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.68
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.61
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.56
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.56
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.31
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.28
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.08
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.02
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.01
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.97
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.7
3ott_A	758	Two-component system sensor histidine kinase; beta	95.4
3ott_A	758	Two-component system sensor histidine kinase; beta	95.3
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.65
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.01
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.34
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.68
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.58
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	86.73
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.26
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	82.4
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	82.11

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.5e-48  Score=374.74  Aligned_cols=290  Identities=22%  Similarity=0.320  Sum_probs=260.3

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+.+|.++|++++|+|++++||+|+.||+|+|||+.++....   ...+|...|.+++|+|++++|++|+.|++|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            45688999999999999999999999999999999999885443   345788899999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      |+.+++......                +|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.++.
T Consensus       178 d~~~~~~~~~~~----------------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~  241 (410)
T 1vyh_C          178 DFQGFECIRTMH----------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  241 (410)
T ss_dssp             ETTSSCEEECCC----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             eCCCCceeEEEc----------------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence            998876543322                5777999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC--------------------CCEEEEEeC
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--------------------GRYLISNGK  343 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~s~~~  343 (498)
                      |+ +++.+|++|+.|++|++||++    .......+.+|...|.+++|+|+                    +.+|++|+.
T Consensus       242 ~~-~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~  316 (410)
T 1vyh_C          242 PN-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  316 (410)
T ss_dssp             EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             EC-CCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence            97 889999999999999999998    77888899999999999999996                    678999999


Q ss_pred             CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE
Q 010883          344 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG  423 (498)
Q Consensus       344 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  423 (498)
                      |+.|++||+++                                  +..+..+.+|.....      +.+|+|++++|++|
T Consensus       317 D~~i~iwd~~~----------------------------------~~~~~~~~~h~~~v~------~v~~~~~g~~l~s~  356 (410)
T 1vyh_C          317 DKTIKMWDVST----------------------------------GMCLMTLVGHDNWVR------GVLFHSGGKFILSC  356 (410)
T ss_dssp             TSEEEEEETTT----------------------------------TEEEEEEECCSSCEE------EEEECSSSSCEEEE
T ss_pred             CCeEEEEECCC----------------------------------CceEEEEECCCCcEE------EEEEcCCCCEEEEE
Confidence            99999999987                                  456777777764322      23567799999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      +.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||+|++|++.
T Consensus       357 s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999999999999999999999999999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-47  Score=357.95  Aligned_cols=290  Identities=16%  Similarity=0.266  Sum_probs=255.3

Q ss_pred             cccCCCCceEEEEEcCC----CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          126 PVDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~d----g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      .+.+|.+.|++++|+|+    +.+||+|+.|++|+||++..+.. .......+|...|.+++|+|++.++++++.|+.|+
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR  105 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            35689999999999985    67999999999999999987643 22334578888999999999999999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      +||+.+++......                .|...+.+++|+|++++|++|+.+|.|++||+.+++....+..|...|.+
T Consensus       106 lWd~~~~~~~~~~~----------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~  169 (321)
T 3ow8_A          106 LWDLENGKQIKSID----------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS  169 (321)
T ss_dssp             EEETTTTEEEEEEE----------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred             EEECCCCCEEEEEe----------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence            99999887654332                23336888999999999999999999999999999998899999999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      ++|+ +++++|++|+.||.|++||++    .++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++.       
T Consensus       170 ~~~s-pdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-------  237 (321)
T 3ow8_A          170 IAYS-PDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-------  237 (321)
T ss_dssp             EEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-------
T ss_pred             EEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-------
Confidence            9998 889999999999999999998    7888899999999999999999999999999999999999987       


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                 ...+..+.+|....      .+++|+|++++|++++.|+.|++||+.+++++.
T Consensus       238 ---------------------------~~~~~~~~~h~~~v------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  284 (321)
T 3ow8_A          238 ---------------------------ANLAGTLSGHASWV------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH  284 (321)
T ss_dssp             ---------------------------CCEEEEECCCSSCE------EEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ---------------------------cceeEEEcCCCCce------EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence                                       34556677776432      233677799999999999999999999999999


Q ss_pred             EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      .+.+|...|++++|+|++++|++++.||.|++||++
T Consensus       285 ~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.4e-47  Score=356.78  Aligned_cols=294  Identities=19%  Similarity=0.303  Sum_probs=253.5

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ....+.+|.+.|++++|+||+++|++|+.||+|+|||+.++..+...   ..|...|.+++|+|++++|++++.|+.|++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe---ecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34568899999999999999999999999999999999988665543   356668999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      |++.+........  .          ...+|...|.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.++
T Consensus       124 w~~~~~~~~~~~~--~----------~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  190 (340)
T 1got_B          124 YNLKTREGNVRVS--R----------ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             EETTTCSBSCEEE--E----------EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             EECccCCCcceeE--E----------EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence            9998754211100  0          0125777999999998875 8999999999999999999999999999999999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      +|+ +++.+|++|+.||.|++||++    .+.....+.+|...|++++|+|++++|++++.|+.|++||++..       
T Consensus       191 ~~~-~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-------  258 (340)
T 1got_B          191 SLA-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-------  258 (340)
T ss_dssp             EEC-TTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred             EEC-CCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-------
Confidence            998 788999999999999999998    77888999999999999999999999999999999999999873       


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA  442 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  442 (498)
                                                 +.+..+..+.....+    .+.+|+|++++|++|+.||.|++||+.+++.+..
T Consensus       259 ---------------------------~~~~~~~~~~~~~~v----~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~  307 (340)
T 1got_B          259 ---------------------------QELMTYSHDNIICGI----TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             ---------------------------EEEEEECCTTCCSCE----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ---------------------------cEEEEEccCCcccce----EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence                                       333333322211122    2336777999999999999999999999999999


Q ss_pred             eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          443 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       443 ~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      +.+|..+|++++|+|++.+|+||+.||.|++||
T Consensus       308 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-46  Score=356.86  Aligned_cols=298  Identities=18%  Similarity=0.273  Sum_probs=254.0

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ....+.+|...|++++|+||+++||+|+.||+|+|||..++.......   .|...|.+++|+|++++|++++.|+.+++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---MPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---cCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            345688999999999999999999999999999999998886655432   45558999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      |++.............          ...+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.++
T Consensus       133 ~~~~~~~~~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~  202 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKK----------SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL  202 (354)
T ss_dssp             EECCCCTTCCSGGGCE----------EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEeccccccccccce----------eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE
Confidence            9987543211111000          112477799999999999999999999999999999999999999999999999


Q ss_pred             EEeCC-CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          283 CFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       283 ~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      +|+|. ++++|++|+.||.|++||++    .+..+..+.+|...|++++|+|++.+|++++.|++|++||++..      
T Consensus       203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~------  272 (354)
T 2pbi_B          203 DLAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD------  272 (354)
T ss_dssp             EECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC------
Confidence            99853 46899999999999999998    78888999999999999999999999999999999999999873      


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                  ..+..+..+.......    +.+|+|++++|++|+.|+.|++||+.+++.+.
T Consensus       273 ----------------------------~~~~~~~~~~~~~~~~----~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          273 ----------------------------REVAIYSKESIIFGAS----SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             ----------------------------EEEEEECCTTCCSCEE----EEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             ----------------------------cEEEEEcCCCccccee----EEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence                                        2333333322211222    23577799999999999999999999999999


Q ss_pred             EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      .+.+|...|++++|+|++++|++|+.||+|++|+
T Consensus       321 ~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-46  Score=351.90  Aligned_cols=314  Identities=21%  Similarity=0.322  Sum_probs=247.5

Q ss_pred             ccccCCCC-ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          125 WPVDQTTS-RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       125 ~~l~~h~~-~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ..+.+|.. .|++++|+|+|++||+|+.|++|+||++.++..........+|...|.+++|+|++++|++++.|+.|++|
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw   88 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW   88 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence            45677887 99999999999999999999999999999886555555567888999999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEEeccCCCee
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVN  280 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~~~v~  280 (498)
                      ++..+.......+              .+|...|.+++|+|++++|++|+.|+.|++||+.++.   .+..+..|...|.
T Consensus        89 ~~~~~~~~~~~~~--------------~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A           89 KKNQDDFECVTTL--------------EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK  154 (345)
T ss_dssp             EECCC-EEEEEEE--------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred             EccCCCeEEEEEc--------------cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence            9887653222211              2577799999999999999999999999999998763   4556778999999


Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc--eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      +++|+ +++.+|++|+.|+.|++||.+    ...  ....+.+|...|++++|+|++++|++++.|+.|++||.......
T Consensus       155 ~~~~~-p~~~~l~s~s~d~~i~~w~~~----~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          155 HVVWH-PSQELLASASYDDTVKLYREE----EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             EEEEC-SSSSCEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             EEEEC-CCCCEEEEEeCCCcEEEEEec----CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            99998 788999999999999999987    443  45678899999999999999999999999999999997543211


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG  437 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  437 (498)
                      .......                   .......+..+.+ |..  .    .+..+|+|++..|++++.|+.|++|+...+
T Consensus       230 ~~~~~~~-------------------~~~~~~~~~~~~~~h~~--~----v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          230 QGVACSG-------------------SDPSWKCICTLSGFHSR--T----IYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             TCCCCC----------------------CEEEEEEEECSSCSS--C----EEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             ccceeec-------------------cCCccceeEEecCCCCC--c----EEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            1100000                   0000122333433 332  1    233467779999999999999999998764


Q ss_pred             c---------EEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCCC
Q 010883          438 E---------QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       438 ~---------~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .         ......+|...|++++|+|+++ +||+|+.||.|++|++......
T Consensus       285 ~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          285 SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             SCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             CCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            2         1233468999999999999985 9999999999999999876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-47  Score=365.21  Aligned_cols=308  Identities=18%  Similarity=0.284  Sum_probs=254.3

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++......   ..|...|.+++|+|++++|++++.|+.|++|
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~---~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI---KLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---ECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE---ecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            3568899999999999999999999999999999999998655543   4566789999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEE-----eccCC
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRI-----LAHTS  277 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~-----~~~~~  277 (498)
                      ++.+.......         ........+|...|.++.|+|+ +..|++|+.|+.|++||+.+++.+..+     .+|..
T Consensus       136 ~~~~~~~~~~~---------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          136 NLSSQADRDGN---------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             ECCCCSSCCCS---------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             ECCCCccccCC---------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence            99764321100         0001123468889999999996 457999999999999999999988777     57899


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                      .|.+++|++.++++|++|+.||+|++||++.   ....+..+.+|...|++++|+|++++|++++.|++|++||+++.  
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~--  281 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--  281 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTT---TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCC---CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--
Confidence            9999999877899999999999999999972   34677888999999999999999999999999999999999873  


Q ss_pred             ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE-EEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                                                      ..+..+..+.... .......+.+|+|+|++|++|+.||.|++||+.+
T Consensus       282 --------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          282 --------------------------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             --------------------------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred             --------------------------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence                                            2333333221100 0000123346788999999999999999999999


Q ss_pred             CcEEEEe----ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          437 GEQVAAL----KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       437 ~~~~~~~----~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ++.+..+    .+|.+.|++++|+|++++|+||+.||+|++|++....
T Consensus       330 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9988777    6899999999999999999999999999999998653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-45  Score=341.49  Aligned_cols=293  Identities=18%  Similarity=0.250  Sum_probs=248.9

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ....+.+|.+.|++++|+|+|++||+|+.||.|++||+.++..+...   ..|..+|.+++|+|++++|++|+.|+.|++
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            34568899999999999999999999999999999999998655543   456678999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT  281 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~  281 (498)
                      ||+.+++......                +|...|.+++|+|++++|++|+.|+.|++||+.++ .....+.+|...|.+
T Consensus        82 wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~  145 (304)
T 2ynn_A           82 FNYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (304)
T ss_dssp             EETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred             EECCCCcEEEEEe----------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence            9999887654332                47779999999999999999999999999999887 455677899999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      ++|+|.++.+|++|+.|++|++||++    ...+...+ .+|...+..+.|+|  ++.+|++++.|+.|++||+++    
T Consensus       146 v~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~----  217 (304)
T 2ynn_A          146 VAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----  217 (304)
T ss_dssp             EEECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence            99996688999999999999999997    44444333 45668899999986  778999999999999999987    


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                                                    ...+..+.+|......      .+|+|++.+|++|+.||.|++||+.+++
T Consensus       218 ------------------------------~~~~~~~~~h~~~v~~------~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          218 ------------------------------KSCVATLEGHMSNVSF------AVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             ------------------------------TEEEEEEECCSSCEEE------EEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             ------------------------------CccceeeCCCCCCEEE------EEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence                                          3667778888743322      2567799999999999999999999999


Q ss_pred             EEEEeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCCC
Q 010883          439 QVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       439 ~~~~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .+..+..|...+.+++|+|++.  ++++|+.|| +.+|++...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence            9999999999999999999886  577776555 778887653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-46  Score=354.51  Aligned_cols=299  Identities=21%  Similarity=0.240  Sum_probs=232.7

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEE-eecCCCceeEEEEEeCCCCCeEEEEECCCeE
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIV  200 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~------dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i  200 (498)
                      ..|...|++++|||||++||+|+.      |+.|++|+..++...... .....|...|++++|+|++++ ++++.||.|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEE
Confidence            579999999999999999999997      778999998876432221 122356668999999999865 567889999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN  280 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~  280 (498)
                      +|||+.+++.........            .+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..|...|+
T Consensus       118 ~lWd~~~~~~~~~~~~~~------------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~  185 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAK------------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN  185 (357)
T ss_dssp             EEC--------CCCCEEE------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEeeccccceeEEEeecc------------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence            999998876544332211            25777999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE--eccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCC
Q 010883          281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~  357 (498)
                      +++|++....++++++.||.|++||++    .+++...  +..|...+++++|+|+ +.+|++|+.|+.|++||+++.  
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--  259 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLWDTR----KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--  259 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEECCTT----SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--
T ss_pred             EEEEccCCCceeeeeccCCceEEEECC----CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--
Confidence            999986556789999999999999998    4444433  3456778999999997 568899999999999999873  


Q ss_pred             ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC-cEEEEEecCCeEEEEECCC
Q 010883          358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~  436 (498)
                                                      +.+..+.+|....  ..    ++|+|++ ++|++|+.|++|+|||+.+
T Consensus       260 --------------------------------~~~~~~~~~~~~v--~~----l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          260 --------------------------------DSAQTSAVHSQNI--TG----LAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             --------------------------------GGCEEECCCSSCE--EE----EEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             --------------------------------cEeEEEeccceeE--EE----EEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence                                            4455666665332  22    2556666 6899999999999999999


Q ss_pred             CcEEEEeccCCCCeeeeEEcC-CCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          437 GEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       437 ~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      ++++..+ +|.+.|++++|+| ++.+|+|++.||+|++|++....+...
T Consensus       302 ~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~  349 (357)
T 4g56_B          302 SEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN  349 (357)
T ss_dssp             CEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred             CcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence            9887665 7999999999998 788999999999999999987655443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=347.42  Aligned_cols=295  Identities=20%  Similarity=0.230  Sum_probs=233.8

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--------EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      ..|...|.+++|+|||++|++++ |+++++||.....        ..........+...|.+++|+|++ .|++++.||.
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            45778899999999999999887 6778888732100        000000111234479999999985 6789999999


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      |+|||+.+++.........            .+|...|.+++|+|+|++|++|+.|+.|++||+.+++++..+.+|...|
T Consensus       105 v~lWd~~~~~~~~~~~~~~------------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V  172 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCK------------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV  172 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEE------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EEEEeccCCCceeEeeccc------------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence            9999999887544332211            1577899999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      .+++|++.+..+|++++.|++|++||++    .+++...+.  .|...+.+++|+|+ +++|++|+.|+.|++||+++  
T Consensus       173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--  246 (344)
T 4gqb_B          173 TCVAASPHKDSVFLSCSEDNRILLWDTR----CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--  246 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETT----SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             EEEEecCCCCCceeeecccccccccccc----ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC--
Confidence            9999996666789999999999999998    666666654  45567999999985 57889999999999999987  


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC-cEEEEEecCCeEEEEECC
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~  435 (498)
                                                      ++.+..+.+|.....      +.+|+|++ ++|++|+.|++|+|||+.
T Consensus       247 --------------------------------~~~~~~~~~h~~~v~------~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          247 --------------------------------TSCVLSSAVHSQCVT------GLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             ----------------------------------CCEEEECCSSCEE------EEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             --------------------------------CcEEEEEcCCCCCEE------EEEEccCCCeEEEEEeCCCeEEEEECC
Confidence                                            355667777764322      23567787 689999999999999999


Q ss_pred             CCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCC
Q 010883          436 SGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       436 ~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +++++ .+.+|.+.|++++|+|+++ +|+|++.||+|++|++.....
T Consensus       289 ~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          289 LSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             CCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            88765 5678999999999999987 677999999999999987543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.2e-45  Score=338.09  Aligned_cols=292  Identities=28%  Similarity=0.467  Sum_probs=252.4

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..+.+|...|++++|+|+|++||+|+.||.|++|++.++.....   ..+|...|.+++|+|++++|++++.|+.|++||
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            46789999999999999999999999999999999998865443   357778999999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      +.+++......                +|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..|...|.+++|
T Consensus        94 ~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A           94 VSSGKCLKTLK----------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             TTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CCCCcEEEEEc----------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence            99887644332                46668999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      + +++.+|++++.||.|++||++    .++.+..+ ..+...+..++|+|++++|++++.|+.|++||+++.        
T Consensus       158 ~-~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------  224 (312)
T 4ery_A          158 N-RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--------  224 (312)
T ss_dssp             C-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT--------
T ss_pred             c-CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--------
Confidence            8 789999999999999999998    66666555 346678999999999999999999999999999873        


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                                ..+..+.+|..........+.   .+++.+|++|+.||.|++||+.+++.+..+
T Consensus       225 --------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  275 (312)
T 4ery_A          225 --------------------------KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKL  275 (312)
T ss_dssp             --------------------------EEEEEECSSCCSSSCCCEEEE---CSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred             --------------------------cEEEEEEecCCceEEEEEEEE---eCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence                                      445556555432222212222   247899999999999999999999999999


Q ss_pred             ccCCCCeeeeEEcCCCCeEEEEe--CCCcEEEecCC
Q 010883          444 KYHTSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP  477 (498)
Q Consensus       444 ~~h~~~v~~l~~sp~~~~l~s~~--~Dg~i~iw~~~  477 (498)
                      .+|...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       276 ~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999999999997  69999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.1e-44  Score=335.20  Aligned_cols=292  Identities=18%  Similarity=0.251  Sum_probs=246.1

Q ss_pred             ccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          125 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      ..+.+|.+.|++++|+|++ ++|++|+.|++|++|++....  .-.......+|...|.+++|+|++++|++++.|++|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR   90 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence            3578999999999999975 899999999999999986421  1122334567888999999999999999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      +||+.+++....+.                +|...|.+++|+|++.+|++|+.|+.|++||+.. +.+..+.+|...|.+
T Consensus        91 ~wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~  153 (319)
T 3frx_A           91 LWDVATGETYQRFV----------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQ  153 (319)
T ss_dssp             EEETTTTEEEEEEE----------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEE
T ss_pred             EEECCCCCeeEEEc----------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEE
Confidence            99999987644332                5777999999999999999999999999999964 566788899999999


Q ss_pred             EEEeCC-----CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          282 VCFGDE-----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       282 ~~~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      +.|.|.     ++.+|++++.|+.|++||++    .......+.+|...|.+++|+|++++|++++.|+.|++||+++. 
T Consensus       154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-  228 (319)
T 3frx_A          154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-  228 (319)
T ss_dssp             EEECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-
T ss_pred             EEEccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence            999843     35589999999999999998    77788889999999999999999999999999999999999872 


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                                                       +.+..+..+..       ..+.+|+|++.+|++++.+ .+++|++..
T Consensus       229 ---------------------------------~~~~~~~~~~~-------v~~~~~sp~~~~la~~~~~-~i~v~~~~~  267 (319)
T 3frx_A          229 ---------------------------------KAMYTLSAQDE-------VFSLAFSPNRYWLAAATAT-GIKVFSLDP  267 (319)
T ss_dssp             ---------------------------------EEEEEEECCSC-------EEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred             ---------------------------------cEEEEecCCCc-------EEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence                                             44555554432       2334677899999988765 599999998


Q ss_pred             CcEEEEec--------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          437 GEQVAALK--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       437 ~~~~~~~~--------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      +..+..+.        .|...+.+++|+|+|++|++|+.||.|++|++.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            88777664        34567999999999999999999999999998653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-44  Score=343.72  Aligned_cols=300  Identities=24%  Similarity=0.411  Sum_probs=243.9

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecC---------------CCceeEEEEEeCCCCCeEEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK---------------SLRWTVTDTSLSPDQRHLVY  193 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~l~~  193 (498)
                      +|.+.|+|++|+|||++||+|+ ++.++||++.++..+.......               .+...|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999986 6899999999986655432111               12224999999999999999


Q ss_pred             EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883          194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL  273 (498)
Q Consensus       194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~  273 (498)
                      ++.|+.|++||+.+++......                +|...|.+++|+|++++|++++.|+.|++||+.+++....+ 
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~----------------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-  203 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQ----------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-  203 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred             EcCCCeEEEEECCCCcEEEEEc----------------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-
Confidence            9999999999999877544322                57779999999999999999999999999999999887776 


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-------ccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQA  346 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~s~~~dg~  346 (498)
                      .+...+.+++|+|.++.+|++|+.||.|++||++    .+..+..+       .+|...|.+++|+|++++|++++.|+.
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            4667899999996689999999999999999997    55555555       578999999999999999999999999


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD  426 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  426 (498)
                      |++||++.........                      ..........+.+|....      .+.+++|++.+|++|+.|
T Consensus       280 v~~wd~~~~~~~~~~~----------------------~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~sgs~D  331 (393)
T 1erj_A          280 VKLWNLQNANNKSDSK----------------------TPNSGTCEVTYIGHKDFV------LSVATTQNDEYILSGSKD  331 (393)
T ss_dssp             EEEEEC-------------------------------------CEEEEEECCSSCE------EEEEECGGGCEEEEEETT
T ss_pred             EEEEECCCCCCccccc----------------------CCCCCcceEEEecccCcE------EEEEECCCCCEEEEEeCC
Confidence            9999998643211100                      000123445566666322      233567799999999999


Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeeeeEEcC------CCCeEEEEeCCCcEEEecCCC
Q 010883          427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp------~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      +.|++||+.+++++..+.+|...|.+++|++      ++++|+||+.||+|++|++..
T Consensus       332 ~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          332 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9999999999999999999999999999886      678999999999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-43  Score=330.34  Aligned_cols=306  Identities=18%  Similarity=0.242  Sum_probs=228.4

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ...+.+|..+|++++|+|+  +||+|+.|++|++|++..+. ..........|...|.+++|+|++++|++++.|+.|+|
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i   84 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI   84 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            3457899999999999998  99999999999999998753 22222223348889999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeeeEEEeccCCC
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----NKLSLRILAHTSD  278 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~----~~~~~~~~~~~~~  278 (498)
                      |++........ ...        ......+|...|.+++|+|++++|++|+.|+.|++||+..    .+++..+.+|...
T Consensus        85 w~~~~~~~~~~-~~~--------~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           85 WAKEESADRTF-EMD--------LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             EEC-------C-CCE--------EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             EEcccCcCccc-cce--------eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence            99864321000 000        0001136888999999999999999999999999999943    2456778899999


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC--ceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCC
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~  354 (498)
                      |.+++|+ |++.+|++|+.|++|++||.+    ..  .++..+.+|...|.+++|+|+  +.+|++++.|++|++||++.
T Consensus       156 v~~v~~~-p~~~~l~s~s~D~~i~iW~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          156 VKHVIWH-PSEALLASSSYDDTVRIWKDY----DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEEEC-SSSSEEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             eEEEEEC-CCCCEEEEEcCCCeEEEEECC----CCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            9999998 788999999999999999986    33  577889999999999999998  77999999999999999875


Q ss_pred             CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883          355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD  433 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd  433 (498)
                      .......       .                   ......+.. |..  .+..+    +|++++ +|++++.||.|++||
T Consensus       231 ~~~~~~~-------~-------------------~~~~~~~~~~h~~--~v~~v----~~s~~~-~l~s~~~dg~v~iw~  277 (330)
T 2hes_X          231 DDEDDQQ-------E-------------------WVCEAILPDVHKR--QVYNV----AWGFNG-LIASVGADGVLAVYE  277 (330)
T ss_dssp             ECTTSCE-------E-------------------EEEEEECCSCCSS--CEEEE----EECTTS-CEEEEETTSCEEEEE
T ss_pred             CCccccc-------e-------------------eEEeeeccccccc--ceEEE----EEcCCC-EEEEEeCCCEEEEEE
Confidence            3211000       0                   012222322 332  22223    445454 899999999999999


Q ss_pred             CCCCc--EEEE-eccCCC-CeeeeEEcC--CCCeEEEEeCCCcEEEecCCC
Q 010883          434 LVSGE--QVAA-LKYHTS-PVRDCSWHP--SQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       434 ~~~~~--~~~~-~~~h~~-~v~~l~~sp--~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      ..+++  .+.. +.+|.. .|++++|+|  ++++|++++.||+|++|++..
T Consensus       278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            98874  3333 357887 899999999  688999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-43  Score=333.02  Aligned_cols=293  Identities=16%  Similarity=0.270  Sum_probs=236.2

Q ss_pred             CccccCCCCceEEEEE-----cC-CCCEEEEEECCCeEEEEECCCCeE----EEEEeecCCCceeEEEEEeCCCCCeEEE
Q 010883          124 PWPVDQTTSRAYVSQF-----SA-DGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLVY  193 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~-----s~-dg~~la~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~~  193 (498)
                      ...+.+|.+.|++++|     ++ |+++||+|+.|++|++||+.++..    ........+|...|.+++|+|++.+|++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            3467899999999999     77 999999999999999999975421    1222345678889999999999999999


Q ss_pred             EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883          194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL  273 (498)
Q Consensus       194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~  273 (498)
                      ++.|++|++||+.+++....+.                +|...|.+++|+|++++|++++.|+.|++||+.... .....
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~----------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~  156 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFV----------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSA  156 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEE----------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECC
T ss_pred             EcCCCcEEEEECCCCcEEEEEc----------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeee
Confidence            9999999999999887644322                577799999999999999999999999999998433 33333


Q ss_pred             ---ccCCCeeEEEEeCCC---------CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE
Q 010883          274 ---AHTSDVNTVCFGDES---------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       274 ---~~~~~v~~~~~~~~~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  341 (498)
                         .|...|.+++|+|..         +.+|++++.||.|++||.     .......+.+|...|.+++|+|++++|+++
T Consensus       157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg  231 (343)
T 2xzm_R          157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATG  231 (343)
T ss_dssp             TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence               688999999998432         279999999999999995     456777888999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883          342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  421 (498)
                      +.|+.|++||++...                                 .....+....   .+    .+.+|+|++.+++
T Consensus       232 s~dg~v~iwd~~~~~---------------------------------~~~~~~~~~~---~v----~~v~~sp~~~~la  271 (343)
T 2xzm_R          232 GKDKKLLIWDILNLT---------------------------------YPQREFDAGS---TI----NQIAFNPKLQWVA  271 (343)
T ss_dssp             ETTCEEEEEESSCCS---------------------------------SCSEEEECSS---CE----EEEEECSSSCEEE
T ss_pred             cCCCeEEEEECCCCc---------------------------------ccceeecCCC---cE----EEEEECCCCCEEE
Confidence            999999999995422                                 1111221111   12    2336677888877


Q ss_pred             EEecCCeEEEEECCCCcEEE--Eec-----------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          422 TGSHDSCVYVYDLVSGEQVA--ALK-----------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       422 ~g~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      ++ .|+.|++||+.+++...  .+.           +|...|++++|+|++++|++|+.||.|++|++.++
T Consensus       272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            55 57789999998766432  443           68889999999999999999999999999998653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.4e-42  Score=350.07  Aligned_cols=304  Identities=17%  Similarity=0.218  Sum_probs=249.7

Q ss_pred             cccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883          113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV  192 (498)
Q Consensus       113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  192 (498)
                      ..+++.-.......+.+|...|++++|||||++||+|+.|++|+|||+.++..... .....|...|.+++|+|++++|+
T Consensus        41 v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l~  119 (611)
T 1nr0_A           41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRIA  119 (611)
T ss_dssp             EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEEE
T ss_pred             EEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee-EeecccCCceEEEEECCCCCEEE
Confidence            33444434455667889999999999999999999999999999999975432221 23356778999999999999999


Q ss_pred             EEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 010883          193 YASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       193 ~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~  267 (498)
                      +++.+    +.|++||.  ++....                ..+|...|.+++|+|++. .|++|+.|+.|++||..+++
T Consensus       120 ~~~~~~~~~~~v~~wd~--~~~~~~----------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          120 AVGEGRERFGHVFLFDT--GTSNGN----------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             EEECCSSCSEEEEETTT--CCBCBC----------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             EEECCCCceeEEEEeeC--CCCcce----------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence            98865    37888874  332111                126788999999999987 69999999999999999999


Q ss_pred             eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-------cccccEEEEEEcCCCCEEEE
Q 010883          268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLIS  340 (498)
Q Consensus       268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~s  340 (498)
                      ....+.+|...|.+++|+ |++++|++|+.|++|++||+.    .+.....+.       +|...|.+++|+|++++|++
T Consensus       182 ~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s  256 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  256 (611)
T ss_dssp             EEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             EeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence            989999999999999998 789999999999999999987    666776663       79999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-eEEEEEEEeccccCCCCcE
Q 010883          341 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKY  419 (498)
Q Consensus       341 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~  419 (498)
                      ++.|++|++||+++.                                  +.+..+..+.. ......+.+      ++..
T Consensus       257 ~s~D~~v~lWd~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~------~~~~  296 (611)
T 1nr0_A          257 ASADKTIKIWNVATL----------------------------------KVEKTIPVGTRIEDQQLGIIW------TKQA  296 (611)
T ss_dssp             EETTSEEEEEETTTT----------------------------------EEEEEEECCSSGGGCEEEEEE------CSSC
T ss_pred             EeCCCeEEEEeCCCC----------------------------------ceeeeecCCCCccceeEEEEE------cCCE
Confidence            999999999999873                                  33333332211 011112222      5778


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       420 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +++++.|+.|++||...++....+.+|...|++++|+|++++|++++.||.|++||+..+.
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence            9999999999999999999888899999999999999999999999999999999998754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.8e-42  Score=346.06  Aligned_cols=283  Identities=24%  Similarity=0.373  Sum_probs=247.3

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ....+.+|...|++++|+|++++|++++.|+.|++||.... .+.   ....|...|.+++|+|++++|++++.|+.|++
T Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE---EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            33567889999999999999999999999999999998765 232   33567779999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      |+... +......                +|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|+++
T Consensus       371 ~~~~~-~~~~~~~----------------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~  432 (577)
T 2ymu_A          371 WNRNG-QLLQTLT----------------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV  432 (577)
T ss_dssp             EETTC-CEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEE
T ss_pred             EcCCC-CEEEEec----------------CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEE
Confidence            99643 3222111                36668999999999999999999999999996 567778888999999999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      +|+ +++++|++++.|+.|++||.     .++.+..+.+|...|++++|+|++++|++++.|+.|++||...        
T Consensus       433 ~~s-~d~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--------  498 (577)
T 2ymu_A          433 AFS-PDDQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------  498 (577)
T ss_dssp             EEC-TTSSEEEEEETTSEEEEEET-----TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------
T ss_pred             EEC-CCCCEEEEEcCCCEEEEEEC-----CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------
Confidence            998 78999999999999999997     5678888999999999999999999999999999999999643        


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA  442 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  442 (498)
                                                 +.+..+.+|.....      +.+|+|++++|++++.||.|++||. +++++..
T Consensus       499 ---------------------------~~~~~~~~h~~~v~------~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~  544 (577)
T 2ymu_A          499 ---------------------------QLLQTLTGHSSSVR------GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT  544 (577)
T ss_dssp             ---------------------------CEEEEEECCSSCEE------EEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred             ---------------------------CEEEEEeCCCCCEE------EEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence                                       66777777764332      2367789999999999999999995 7889999


Q ss_pred             eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          443 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       443 ~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      +.+|.+.|++++|+||+++|+|++.|++|++||
T Consensus       545 ~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.3e-41  Score=318.98  Aligned_cols=293  Identities=20%  Similarity=0.269  Sum_probs=241.4

Q ss_pred             cccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE--EEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          126 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      .|.+|.+.|++++|+|+ +++||+|+.|++|+|||+.++..  ........+|...|.+++|+|++++|++++.|+.|++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            57899999999999998 68999999999999999876532  1122345678889999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EEEeccCCCeeE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVNT  281 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~  281 (498)
                      |+...........                .+...+..+.+++++.+|++++.|+.+++||+...... ....+|...+.+
T Consensus       113 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~  176 (340)
T 4aow_A          113 WDLTTGTTTRRFV----------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC  176 (340)
T ss_dssp             EETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred             Eeecccceeeeec----------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence            9998876544332                13336888999999999999999999999999776543 334578999999


Q ss_pred             EEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccc
Q 010883          282 VCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS  360 (498)
Q Consensus       282 ~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  360 (498)
                      ++|++.. ..++++++.|+.|++||++    ..+.+..+.+|...|++++|+|++++|++++.|+.|++||+++.     
T Consensus       177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-----  247 (340)
T 4aow_A          177 VRFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-----  247 (340)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----
T ss_pred             eEEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-----
Confidence            9997433 4578899999999999998    78888999999999999999999999999999999999999872     


Q ss_pred             cccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE
Q 010883          361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV  440 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~  440 (498)
                                                   ..+..+..+..   +..+    .|+|++. +++++.|+.|++||+.++..+
T Consensus       248 -----------------------------~~~~~~~~~~~---v~~~----~~~~~~~-~~~~~~d~~i~iwd~~~~~~~  290 (340)
T 4aow_A          248 -----------------------------KHLYTLDGGDI---INAL----CFSPNRY-WLCAATGPSIKIWDLEGKIIV  290 (340)
T ss_dssp             -----------------------------EEEEEEECSSC---EEEE----EECSSSS-EEEEEETTEEEEEETTTTEEE
T ss_pred             -----------------------------ceeeeecCCce---EEee----ecCCCCc-eeeccCCCEEEEEECCCCeEE
Confidence                                         44555555442   2222    4556665 556667999999999988776


Q ss_pred             EEec---------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          441 AALK---------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       441 ~~~~---------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ..+.         +|...|++++|+|++++|++|+.||.|+|||+.++.
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            6653         688999999999999999999999999999998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-41  Score=345.27  Aligned_cols=341  Identities=16%  Similarity=0.208  Sum_probs=255.5

Q ss_pred             CCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      ....+.+|...|++++|+|++. +|++|+.|++|++||..+++...   ...+|...|.+++|+|++++|++++.|++|+
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~---~l~~H~~~V~~v~fspdg~~las~s~D~~i~  215 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIV  215 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee---eeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence            3456889999999999999997 69999999999999998875443   3467888999999999999999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE----------
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----------  271 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~----------  271 (498)
                      +||+.+++.........         ....+|...|.+++|+|+|++|++++.|++|++||+.+++.+..          
T Consensus       216 lwd~~~g~~~~~~~~~~---------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDS---------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             EEETTTCCEEEECBCTT---------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             EEECCCCcEeeeecccc---------ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            99998887654332100         01125888999999999999999999999999999988765433          


Q ss_pred             ---------------------------------EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE
Q 010883          272 ---------------------------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV  318 (498)
Q Consensus       272 ---------------------------------~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  318 (498)
                                                       +.+|...|++++|+ +++++|++++.|++|++||+.    .+.....
T Consensus       287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s-pdg~~l~s~s~D~~v~~Wd~~----~~~~~~~  361 (611)
T 1nr0_A          287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDIS----TGISNRV  361 (611)
T ss_dssp             EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEC
T ss_pred             eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECC----CCceeee
Confidence                                             34788999999998 789999999999999999997    5555444


Q ss_pred             e-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccc---------------------------------cccC
Q 010883          319 L-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS---------------------------------CNLG  364 (498)
Q Consensus       319 ~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------------------~~~~  364 (498)
                      + .+|...|.+++|++++ .+++++.|+.+++|++........                                 ....
T Consensus       362 ~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~  440 (611)
T 1nr0_A          362 FPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG  440 (611)
T ss_dssp             SSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred             cccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence            4 4677888888888665 577788888888888765321100                                 0000


Q ss_pred             ---cccccccceeecCCcCcccccCCC-CceEEEEccCceeE---E---EEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883          365 ---FRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLR---T---LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL  434 (498)
Q Consensus       365 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~---~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~  434 (498)
                         .......+..+.+.|++..+.... +..+..+.......   .   ......+.+|||||++|++++.|+.|++||+
T Consensus       441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~  520 (611)
T 1nr0_A          441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV  520 (611)
T ss_dssp             EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred             ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence               001122334556666665554432 33444443221100   0   0011344578889999999999999999999


Q ss_pred             CC-CcEEEE--eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          435 VS-GEQVAA--LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       435 ~~-~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .+ ++.+..  +.+|...|++++|+||+++|++++.|++|++|++..+..
T Consensus       521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~  570 (611)
T 1nr0_A          521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  570 (611)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence            87 555443  335999999999999999999999999999999987653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-41  Score=319.08  Aligned_cols=292  Identities=16%  Similarity=0.210  Sum_probs=252.3

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+.+|.+.|++++|+|+|++||+|+.||.|++||+.++..+..   ...|...|.+++|+|++++|++++.|+.|++|
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT---LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh---hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            356789999999999999999999999999999999998865553   35678899999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCe-----------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANK-----------  267 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~-----------  267 (498)
                      |+.+++......                 +...|.+++|+|++++|++++.+     +.|++||+....           
T Consensus       102 d~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  164 (369)
T 3zwl_B          102 DVSNGQCVATWK-----------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE  164 (369)
T ss_dssp             ETTTCCEEEEEE-----------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred             ECCCCcEEEEee-----------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence            999887655443                 22379999999999999999999     999999997653           


Q ss_pred             eeEEEeccCC--CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC-CceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883          268 LSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       268 ~~~~~~~~~~--~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                      ....+..|..  .+.+++|+ +++++|++++.||.|++||++    . ...+..+..|...|.+++|+|++++|++++.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          165 PIHKIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVS----NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             CSEEEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETT----TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECC----CCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence            3344556666  99999998 788999999999999999997    5 67888888999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS  424 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  424 (498)
                      +.|++||+++.                                  ..+..+.....   +    ...+|+|+++++++++
T Consensus       240 ~~i~v~d~~~~----------------------------------~~~~~~~~~~~---~----~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          240 TNSFLVDVSTL----------------------------------QVLKKYETDCP---L----NTAVITPLKEFIILGG  278 (369)
T ss_dssp             SEEEEEETTTC----------------------------------CEEEEEECSSC---E----EEEEECSSSSEEEEEE
T ss_pred             ceEEEEECCCC----------------------------------ceeeeecCCCC---c----eeEEecCCCceEEEee
Confidence            99999999873                                  34444442221   1    2235677999999999


Q ss_pred             cCC--------------eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          425 HDS--------------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       425 ~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .++              .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence            988              899999999999999999999999999999999999999999999999987543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.1e-42  Score=327.76  Aligned_cols=310  Identities=15%  Similarity=0.198  Sum_probs=242.3

Q ss_pred             CccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEE
Q 010883          124 PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVH  201 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~  201 (498)
                      ...+.+|...|++++|+|++ ++||+|+.||.|+|||+.++..... ....+|...|.+++|+| ++++|++++.|+.|+
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            34678899999999999999 9999999999999999998754433 33346888999999999 789999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      +||+.+.........              .+|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+..|...|.+
T Consensus       145 iwd~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~  209 (383)
T 3ei3_B          145 LRDFSGSVIQVFAKT--------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH  209 (383)
T ss_dssp             EEETTSCEEEEEECC--------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred             EEECCCCceEEEecc--------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence            999986433222111              134458999999999999999999999999999 57788888899999999


Q ss_pred             EEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          282 VCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       282 ~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      ++|+ +++. +|++++.|+.|++||++........+..+ +|...|.+++|+| ++++|++++.|+.|++||+++.....
T Consensus       210 ~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          210 AEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             EEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            9998 5566 99999999999999998544335566655 6999999999999 99999999999999999998865432


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceE-EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV-ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                      .........               ..+  ...+ ..+....   ..    ...+++|++++  +|+.||.|++||+.+++
T Consensus       288 ~~~~~~~~~---------------~~~--~~~~~~~~~p~~---~~----~~~~~s~dg~~--s~s~d~~i~iwd~~~~~  341 (383)
T 3ei3_B          288 QIIIHPHRQ---------------FQH--LTPIKATWHPMY---DL----IVAGRYPDDQL--LLNDKRTIDIYDANSGG  341 (383)
T ss_dssp             EEEECCBCC---------------CTT--SCCCCCEECSSS---SE----EEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred             ccccccccc---------------ccc--ccceEEeccCCC---Cc----eEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence            221100000               000  0000 0111111   01    11256678877  88899999999999999


Q ss_pred             EEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          439 QVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       439 ~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      .+..+.+  |...+..++|+|++++|++++ ||.|++||+.+
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            9999986  457777889999999999997 99999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.2e-42  Score=338.89  Aligned_cols=304  Identities=15%  Similarity=0.186  Sum_probs=229.2

Q ss_pred             ccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEE
Q 010883          125 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHI  202 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~i  202 (498)
                      .....|...|+|++|+| ++++||+|+.||.|+|||+.++... ......+|...|++++|+| ++++|++++.|++|++
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            34567899999999999 5689999999999999999876432 2334567889999999998 6899999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      ||+.++.........              .+...+.+++|+|++++|++|+.||.|++||+.. +.+..+.+|...|.++
T Consensus       192 wd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v  256 (435)
T 4e54_B          192 QDFKGNILRVFASSD--------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHV  256 (435)
T ss_dssp             EETTSCEEEEEECCS--------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEE
T ss_pred             eeccCCceeEEeccC--------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEee
Confidence            999876543222111              2333678999999999999999999999999965 5566788999999999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      +|+|....+|++|+.|+.|++||++.... ........+|...|++++|+|++++|++++.|+.|++||+++....... 
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~-  334 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRG-KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL-  334 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE-
T ss_pred             eecCCCceEEEEecCcceeeEEecccccc-cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE-
Confidence            99966667899999999999999984331 1223344679999999999999999999999999999999875432221 


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE-----------e-cCCeEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-----------S-HDSCVY  430 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-----------~-~dg~i~  430 (498)
                                                       ..|..........+...++|++.+++++           + .++.|+
T Consensus       335 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~  381 (435)
T 4e54_B          335 ---------------------------------IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID  381 (435)
T ss_dssp             ---------------------------------CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred             ---------------------------------ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence                                             1111000000000111223333333333           2 346799


Q ss_pred             EEECCCCcEEEEec-cCCCCeeee-EEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          431 VYDLVSGEQVAALK-YHTSPVRDC-SWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       431 iwd~~~~~~~~~~~-~h~~~v~~l-~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++..+.
T Consensus       382 iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          382 VFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             EECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred             EEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence            99999999988875 688889988 6999999999876 8899999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.1e-41  Score=314.29  Aligned_cols=288  Identities=17%  Similarity=0.218  Sum_probs=242.3

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE--eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+|...|++++|+|++++|++++ ||.|++|++.++......  .....|...|.+++|+|++++|++++.|+.|++|
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            3457999999999999999999998 999999999876432222  2223677899999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      |+.+++........              +|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++
T Consensus       125 d~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~  190 (337)
T 1gxr_A          125 DLAAPTPRIKAELT--------------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             ECCCC--EEEEEEE--------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             ECCCCCcceeeecc--------------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence            99887632222211              3555899999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      |+ +++++|++++.||.|++||++    ..+.+..+ .+...+.+++|+|++++|++++.|+.|++||++..        
T Consensus       191 ~~-~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~--------  256 (337)
T 1gxr_A          191 IS-NDGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--------  256 (337)
T ss_dssp             EC-TTSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS--------
T ss_pred             EC-CCCCEEEEEecCCcEEEEECC----CCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------
Confidence            98 788999999999999999997    66666555 47788999999999999999999999999999873        


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                                 ....+..|...  +    ..+.|+|++++|++++.||.|++||+.+++.+...
T Consensus       257 ---------------------------~~~~~~~~~~~--v----~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          257 ---------------------------DKYQLHLHESC--V----LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             ---------------------------CEEEECCCSSC--E----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ---------------------------CeEEEcCCccc--e----eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence                                       22233444322  2    23356779999999999999999999999888555


Q ss_pred             ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       444 ~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                       .|...|.+++|+|++++|++++.||.|++|++
T Consensus       304 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          304 -KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence             48899999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.3e-40  Score=335.24  Aligned_cols=286  Identities=24%  Similarity=0.385  Sum_probs=249.3

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ....+.+|...|.+++|+|++++|++++.|+.|++|+.... ...   ...+|...|.+++|+|++++|++++.|+.|++
T Consensus       254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~---~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~  329 (577)
T 2ymu_A          254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  329 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEE---EEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence            34567889999999999999999999999999999997643 333   33577889999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      ||.........                 .+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.++
T Consensus       330 w~~~~~~~~~~-----------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~  391 (577)
T 2ymu_A          330 WNRNGQHLQTL-----------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV  391 (577)
T ss_dssp             EETTSCEEEEE-----------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEE
T ss_pred             EeCCCCeeEEE-----------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEE
Confidence            99876543221                 135568999999999999999999999999995 567778888999999999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      +|+ +++++|++++.|+.|++||.     .++.+..+.+|...|++++|+|++++|++++.|+.|++||+..        
T Consensus       392 ~~s-~dg~~l~~~~~d~~v~~~~~-----~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--------  457 (577)
T 2ymu_A          392 AFS-PDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--------  457 (577)
T ss_dssp             EEC-TTSSCEEEEETTSEEEEECT-----TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--------
T ss_pred             EEC-CCCCEEEEEeCCCEEEEEeC-----CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--------
Confidence            998 78999999999999999996     5677888999999999999999999999999999999999754        


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA  442 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  442 (498)
                                                 +.+..+.+|.....      +.+|+|++++|++++.|+.|++||. +++++..
T Consensus       458 ---------------------------~~~~~~~~~~~~v~------~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~  503 (577)
T 2ymu_A          458 ---------------------------QLLQTLTGHSSSVR------GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT  503 (577)
T ss_dssp             ---------------------------CEEEEEECCSSCEE------EEEECTTSCEEEEEETTSEEEEEET-TSCEEEE
T ss_pred             ---------------------------CEEEEEcCCCCCEE------EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence                                       55666666664322      2367789999999999999999995 7889999


Q ss_pred             eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          443 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       443 ~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      +.+|...|++++|+|++++|++++.||.|++||...
T Consensus       504 ~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred             EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence            999999999999999999999999999999999753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-40  Score=307.87  Aligned_cols=252  Identities=19%  Similarity=0.259  Sum_probs=214.5

Q ss_pred             cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883          172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  251 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~  251 (498)
                      ..+|...|++++|+|++++|++++.||.|++||+.++.......                +|..+|.+++|+|++++|++
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s   72 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ----------------VTETPVRAGKFIARKNWIIV   72 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CCSSCEEEEEEEGGGTEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee----------------ccCCcEEEEEEeCCCCEEEE
Confidence            34677799999999999999999999999999999887644332                35558999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEeccccccEEEEE
Q 010883          252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFID  330 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~  330 (498)
                      |+.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.||+|++||++    .. .....+.+|...|.+++
T Consensus        73 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~----~~~~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGG----GTTEEEEEECCCCSCEEEEE
T ss_pred             ECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECC----CCcchhhhhcccCCcEEEEE
Confidence            9999999999999999999999999999999998 788999999999999999997    44 45667889999999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          331 SRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       331 ~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      |+| ++.+|++|+.|+.|++||++.....                                 .....++.....  ...+
T Consensus       148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~---------------------------------~~~~~~~~~~v~--~~~~  192 (304)
T 2ynn_A          148 FNPKDPSTFASGCLDRTVKVWSLGQSTPN---------------------------------FTLTTGQERGVN--YVDY  192 (304)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEETTCSSCS---------------------------------EEEECCCTTCEE--EEEE
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCcc---------------------------------ceeccCCcCcEE--EEEE
Confidence            999 6789999999999999999763311                                 111122221111  1222


Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .  ..+++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||+|++||+.+...
T Consensus       193 ~--~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          193 Y--PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             C--CSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             E--EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence            2  234788999999999999999999999999999999999999999999999999999999999987653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-40  Score=344.60  Aligned_cols=290  Identities=21%  Similarity=0.291  Sum_probs=237.2

Q ss_pred             cccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          126 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      .+.+|.+.|++++|+|++ ++|++|+.|++|++|++.++...  .......+|...|.+++|+|++++|++++.|+.|+|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            578999999999999975 79999999999999999763211  112234578889999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE---eccCCCe
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDV  279 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~~~~v  279 (498)
                      ||+.++.......                +|...|.+++|+|++++|++|+.|++|++||+.........   .+|...|
T Consensus       457 wd~~~~~~~~~~~----------------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v  520 (694)
T 3dm0_A          457 WDLAAGVSTRRFV----------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV  520 (694)
T ss_dssp             EETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred             EECCCCcceeEEe----------------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence            9999887644332                57779999999999999999999999999998765433222   3688899


Q ss_pred             eEEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          280 NTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       280 ~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      .+++|+|.. ...|++++.|++|++||++    .......+.+|...|++++|+|++++|++++.|+.|++||+++.   
T Consensus       521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---  593 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---  593 (694)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---
T ss_pred             EEEEEeCCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Confidence            999998433 3689999999999999998    77888899999999999999999999999999999999999873   


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                                                     +.+..+..+..   +    .+.+|+|++.+|++++ ++.|+|||+.+++
T Consensus       594 -------------------------------~~~~~~~~~~~---v----~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~  634 (694)
T 3dm0_A          594 -------------------------------KKLYSLEANSV---I----HALCFSPNRYWLCAAT-EHGIKIWDLESKS  634 (694)
T ss_dssp             -------------------------------EEEECCBCSSC---E----EEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred             -------------------------------ceEEEecCCCc---E----EEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence                                           33333333321   2    2235677888887765 5669999999999


Q ss_pred             EEEEeccCC-------------------CCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          439 QVAALKYHT-------------------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       439 ~~~~~~~h~-------------------~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      .+..+..+.                   ..+++++|+|++++|++|+.||.|++|++.
T Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            887775322                   137899999999999999999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.9e-41  Score=322.07  Aligned_cols=288  Identities=13%  Similarity=0.117  Sum_probs=242.2

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------EEEEEeecCCCceeEEEEEeCCC----C---CeE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------KIQKDILAKSLRWTVTDTSLSPD----Q---RHL  191 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~v~~~~~sp~----~---~~l  191 (498)
                      ..+.+|.+.|++++|+|  ++|++|+.||.|++|++.++.      .+..   ...|...|++++|+|+    +   ++|
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS---HFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE---EECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE---EecCCCcEEEEEEecccccCCccccEE
Confidence            45679999999999999  899999999999999999875      2333   2367779999999999    9   999


Q ss_pred             EEEECCCeEEEEECCCCce-----eccccccccccCccccccCCCCc-----eecEEEEEEc----CCCCE-EEEEeCCC
Q 010883          192 VYASMSPIVHIVDVGSGTM-----ESLANVTEIHDGLDFSAADDGGY-----SFGIFSLKFS----TDGRE-LVAGSSDD  256 (498)
Q Consensus       192 ~~~s~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~h-----~~~i~~~~~s----~~g~~-l~~g~~dg  256 (498)
                      ++++.|+.|++|++.+++.     .....                +|     ...|.+++|+    |++++ |++++.||
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  148 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLD----------------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG  148 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEEC----------------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeec----------------ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence            9999999999999987664     21111                23     4589999999    99999 99999999


Q ss_pred             eEEEEECCC------CeeeE-----EEe-------ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE
Q 010883          257 CIYVYDLEA------NKLSL-----RIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV  318 (498)
Q Consensus       257 ~i~vwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  318 (498)
                      .|++||+.+      ++.+.     .+.       .|...|.+++|+ +++ +|++++.||.|++||++    ....+..
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~----~~~~~~~  222 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYN  222 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEE
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECC----CCceeEE
Confidence            999999998      66655     663       488999999998 667 99999999999999998    7788888


Q ss_pred             ecc---c---cccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883          319 LMG---H---LEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD  389 (498)
Q Consensus       319 ~~~---~---~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (498)
                      +..   |   ...|.+++|+|++++|++++.|   +.|++||+++.                                  
T Consensus       223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----------------------------------  268 (397)
T 1sq9_A          223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----------------------------------  268 (397)
T ss_dssp             EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC----------------------------------
T ss_pred             EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC----------------------------------
Confidence            888   8   9999999999999999999999   99999999873                                  


Q ss_pred             ceEEEEcc-------------CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec------cC----
Q 010883          390 QSVATYKG-------------HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------YH----  446 (498)
Q Consensus       390 ~~~~~~~~-------------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~h----  446 (498)
                      +.+..+..             |..  .+    .+.+|+|++++|++++.||.|++||+.+++.+..+.      +|    
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~--~v----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  342 (397)
T 1sq9_A          269 ERIGSLSVPTHSSQASLGEFAHSS--WV----MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI  342 (397)
T ss_dssp             CEEEEECBC--------CCBSBSS--CE----EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred             cccceeccCcccccccccccccCC--cE----EEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence            33444444             332  22    233567799999999999999999999999999998      88    


Q ss_pred             -----------CCCeeeeEEcCCC----------CeEEEEeCCCcEEEecCCCC
Q 010883          447 -----------TSPVRDCSWHPSQ----------PMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       447 -----------~~~v~~l~~sp~~----------~~l~s~~~Dg~i~iw~~~~~  479 (498)
                                 ..+|++++|+|++          ++|++++.||.|++|++.++
T Consensus       343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                       9999999999998          79999999999999998765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=303.40  Aligned_cols=295  Identities=16%  Similarity=0.171  Sum_probs=245.4

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ....+.+|.+.|++++| |++++|++|+.||.|++||+.++......   ..|...|.+++|+|++++|++++.|+.|++
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV---YTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE---EECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe---ecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            34567899999999999 99999999999999999999887554433   345668999999999999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      |++...........             ..+|...|.+++|  ++++|++++.||.|++||  .++....+..|...+.++
T Consensus        86 ~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~  148 (313)
T 3odt_A           86 VPLFATSGEDPLYT-------------LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDA  148 (313)
T ss_dssp             EETTCCTTSCC-CE-------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEE
T ss_pred             EEeeecCCCCcccc-------------hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEE
Confidence            99876532211111             1246678999999  577999999999999999  677788888999999999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      +|.|++++++++++.||.|++||.      ......+.. |...+.+++|+|++. +++++.|+.|++||+++       
T Consensus       149 ~~~~~~~~~l~~~~~d~~i~i~d~------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-------  214 (313)
T 3odt_A          149 KVVSFSENKFLTASADKTIKLWQN------DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-------  214 (313)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEET------TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-------
T ss_pred             EEccCCCCEEEEEECCCCEEEEec------CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-------
Confidence            999779999999999999999994      355666666 899999999999988 99999999999999987       


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                 .+.+..+..|....  .    +.+|+|++ .|++++.||.|++||+.+++.+.
T Consensus       215 ---------------------------~~~~~~~~~~~~~i--~----~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~  260 (313)
T 3odt_A          215 ---------------------------GDVLRTYEGHESFV--Y----CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ  260 (313)
T ss_dssp             ---------------------------CCEEEEEECCSSCE--E----EEEECTTS-CEEEEETTSEEEEECTTTCCEEE
T ss_pred             ---------------------------hhhhhhhhcCCceE--E----EEEEecCC-CEEEEecCCEEEEEECCCCceeE
Confidence                                       35566666665332  2    23566688 58999999999999999999999


Q ss_pred             EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccc
Q 010883          442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN  487 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~  487 (498)
                      .+..|...|++++|+|+++ +++++.||.|++|++..+........
T Consensus       261 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~  305 (313)
T 3odt_A          261 VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEI  305 (313)
T ss_dssp             EEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC----
T ss_pred             EEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhh
Confidence            9999999999999999998 66799999999999988765544433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-40  Score=316.64  Aligned_cols=297  Identities=15%  Similarity=0.166  Sum_probs=242.0

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      .+..|..+|++++|+|+|++||+|+.|+.|++||+.+++ .........|...|.+++|+|++++|++++.|+.|++||+
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            345689999999999999999999999999999999874 1122233467789999999999999999999999999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEE-eccCCCeeE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI-LAHTSDVNT  281 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~---~~~~-~~~~~~v~~  281 (498)
                      .+++........              +|...|.+++|+|++++|++++.|+.|++||+..++.   ...+ ..|...|.+
T Consensus        82 ~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~  147 (372)
T 1k8k_C           82 KGRTWKPTLVIL--------------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  147 (372)
T ss_dssp             ETTEEEEEEECC--------------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             CCCeeeeeEEee--------------cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence            887643332211              3556899999999999999999999999999988763   2333 468999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccc--------------cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcE
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCL--------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI  347 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~--------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i  347 (498)
                      ++|+ +++++|++++.||.|++||++..              ...+..+..+..|...|.+++|+|++++|++++.|+.|
T Consensus       148 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  226 (372)
T 1k8k_C          148 LDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV  226 (372)
T ss_dssp             EEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred             EEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence            9998 78899999999999999996421              11467788888999999999999999999999999999


Q ss_pred             EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883          348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS  427 (498)
Q Consensus       348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  427 (498)
                      ++||+++                                  .+.+..+..|...  +.    +++|+|++.+|++| .|+
T Consensus       227 ~i~d~~~----------------------------------~~~~~~~~~~~~~--v~----~~~~~~~~~~l~~~-~d~  265 (372)
T 1k8k_C          227 CLADADK----------------------------------KMAVATLASETLP--LL----AVTFITESSLVAAG-HDC  265 (372)
T ss_dssp             EEEEGGG----------------------------------TTEEEEEECSSCC--EE----EEEEEETTEEEEEE-TTS
T ss_pred             EEEECCC----------------------------------CceeEEEccCCCC--eE----EEEEecCCCEEEEE-eCC
Confidence            9999987                                  3556666666532  22    23566689988888 899


Q ss_pred             eEEEEECCC--CcE--------------------------------E------EEe-ccCCCCeeeeEEc-CCC---CeE
Q 010883          428 CVYVYDLVS--GEQ--------------------------------V------AAL-KYHTSPVRDCSWH-PSQ---PML  462 (498)
Q Consensus       428 ~i~iwd~~~--~~~--------------------------------~------~~~-~~h~~~v~~l~~s-p~~---~~l  462 (498)
                      .|++|++.+  ++.                                .      ..+ .+|..+|++++|+ +++   .+|
T Consensus       266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l  345 (372)
T 1k8k_C          266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF  345 (372)
T ss_dssp             SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred             eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence            999999987  421                                0      233 4899999999976 666   899


Q ss_pred             EEEeCCCcEEEecCCCC
Q 010883          463 VSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       463 ~s~~~Dg~i~iw~~~~~  479 (498)
                      +|++.||.|++|++...
T Consensus       346 ~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          346 CTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             EEEETTSEEEEEEHHHH
T ss_pred             EEecCCCceEEEEecCh
Confidence            99999999999998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=317.00  Aligned_cols=288  Identities=18%  Similarity=0.252  Sum_probs=237.4

Q ss_pred             cCCCCceEEEEEcCCCC-EEEEEECCCeEEEEEC----CCCe------EEEEEee-cC------CCceeEEEEEeCCCCC
Q 010883          128 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDV----ERGW------KIQKDIL-AK------SLRWTVTDTSLSPDQR  189 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~----~~~~------~~~~~~~-~~------~~~~~v~~~~~sp~~~  189 (498)
                      ..|.++|++++|+|+|+ +||+|+.||.|++|++    .++.      ....... ..      +|...|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45669999999999999 9999999999999999    8775      2222211 11      1567899999999999


Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS  269 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  269 (498)
                      +|++++.|+.|++||. +++......                +|...|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus       122 ~l~~~~~dg~i~i~~~-~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          122 SIVTGVENGELRLWNK-TGALLNVLN----------------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             EEEEEETTSCEEEEET-TSCEEEEEC----------------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             EEEEEeCCCeEEEEeC-CCCeeeecc----------------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            9999999999999993 443322221                36668999999999999999999999999999876544


Q ss_pred             E--------------------------------------------------------EEeccCCCeeEEEEeCCCCCEEE
Q 010883          270 L--------------------------------------------------------RILAHTSDVNTVCFGDESGHLIY  293 (498)
Q Consensus       270 ~--------------------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~  293 (498)
                      .                                                        .+..|...|.+++|+ +++.+|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~  263 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLL  263 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEE
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEE
Confidence            3                                                        233577889999998 7888999


Q ss_pred             EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccce
Q 010883          294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR  373 (498)
Q Consensus       294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  373 (498)
                      +++.||.|++||++    ....+..+..|...|.+++|+|++ +|++++.|+.|++||+++                   
T Consensus       264 ~~~~d~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-------------------  319 (425)
T 1r5m_A          264 SASDDGTLRIWHGG----NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-------------------  319 (425)
T ss_dssp             EEETTSCEEEECSS----SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-------------------
T ss_pred             EEcCCCEEEEEECC----CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-------------------
Confidence            99999999999998    677788888999999999999999 999999999999999987                   


Q ss_pred             eecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc---------------
Q 010883          374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE---------------  438 (498)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---------------  438 (498)
                                     ...+..+..|....      ...+|+|++++|++++.||.|++||+.+++               
T Consensus       320 ---------------~~~~~~~~~~~~~i------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  378 (425)
T 1r5m_A          320 ---------------NTLLALSIVDGVPI------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN  378 (425)
T ss_dssp             ---------------TEEEEEEECTTCCE------EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred             ---------------CcEeEecccCCccE------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence                           34555555554322      223667799999999999999999999888               


Q ss_pred             -----EEEEeccCCC--CeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          439 -----QVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       439 -----~~~~~~~h~~--~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                           .+..+..|..  .|++++|+|++++|++++.||.|++|++.+
T Consensus       379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence                 8899999976  999999999999999999999999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=320.71  Aligned_cols=321  Identities=17%  Similarity=0.199  Sum_probs=246.1

Q ss_pred             ccccccccccccCCCCCccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEee----------cCCCc
Q 010883          108 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL----------AKSLR  176 (498)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~  176 (498)
                      ..+....+...-.......+.+|.+.|++++|+| ++++||+|+.||.|++||+.++........          ...|.
T Consensus        20 ~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (408)
T 4a11_B           20 RAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR   99 (408)
T ss_dssp             HHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred             eccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence            3333333333334445567788999999999999 999999999999999999987633222111          13478


Q ss_pred             eeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEE
Q 010883          177 WTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG  252 (498)
Q Consensus       177 ~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g  252 (498)
                      ..|.+++|+| ++++|++++.|+.|++||+.+++.......                 ...+.++.|++.   +.+++++
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~  162 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-----------------EETVYSHHMSPVSTKHCLVAVG  162 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-----------------SSCEEEEEECSSCSSCCEEEEE
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-----------------CCceeeeEeecCCCCCcEEEEE
Confidence            8999999999 788999999999999999998876554432                 226889999984   4599999


Q ss_pred             eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-------------
Q 010883          253 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-------------  319 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------------  319 (498)
                      +.++.|++||+.+++.+..+..|...|.+++|+|....+|++++.||.|++||++...   ..+..+             
T Consensus       163 ~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~  239 (408)
T 4a11_B          163 TRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS---GCLITLDQHNGKKSQAVES  239 (408)
T ss_dssp             ESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS---CCSEECCTTTTCSCCCTTT
T ss_pred             cCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC---cccccccccccccceeecc
Confidence            9999999999999999999999999999999984444479999999999999997322   122222             


Q ss_pred             --ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883          320 --MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG  397 (498)
Q Consensus       320 --~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (498)
                        ..|...|.+++|+|++++|++++.|+.|++||+++............                             ..
T Consensus       240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------------------~~  290 (408)
T 4a11_B          240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC-----------------------------NN  290 (408)
T ss_dssp             SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-----------------------------CC
T ss_pred             ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc-----------------------------cc
Confidence              57889999999999999999999999999999988543221100000                             00


Q ss_pred             CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ..   .  ...+... ...+..+++++.++.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++.
T Consensus       291 ~~---~--~~~~~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          291 SK---K--GLKFTVS-CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             CS---S--CCCCEEC-CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             cc---c--cceeEEe-cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence            00   0  0000011 1234567777889999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCC
Q 010883          478 GNGEAA  483 (498)
Q Consensus       478 ~~~~~~  483 (498)
                      ..+...
T Consensus       365 ~~~~~~  370 (408)
T 4a11_B          365 LYEPVP  370 (408)
T ss_dssp             C-----
T ss_pred             CCCccC
Confidence            876543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-40  Score=315.56  Aligned_cols=302  Identities=18%  Similarity=0.222  Sum_probs=241.1

Q ss_pred             ccCCCCceEEEEEcCC----CCEEEEEECCCeEEEEECCCCeEEEEEee--cCCCceeEEEEEeCCC----CCeEEEEEC
Q 010883          127 VDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPD----QRHLVYASM  196 (498)
Q Consensus       127 l~~h~~~v~~~~~s~d----g~~la~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~----~~~l~~~s~  196 (498)
                      ..+|.++|++++|+|+    ...+++++.++.|++|++.++..+.....  ...|...|++++|+|+    +++|++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4589999999999984    45666666777999999997755444332  2236678999999999    679999999


Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEE---
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI---  272 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~---  272 (498)
                      |+.|++||+.+++......                +|...|.+++|+| ++++|++++.||.|++||+.+++.+..+   
T Consensus        94 dg~i~v~d~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  157 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYV----------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV  157 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEE----------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred             CCEEEEEEchhceEeeeec----------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence            9999999999877644332                4666999999999 9999999999999999999999988888   


Q ss_pred             eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee----------------------------EEeccccc
Q 010883          273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA----------------------------GVLMGHLE  324 (498)
Q Consensus       273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------------~~~~~~~~  324 (498)
                      ..|...|.+++|+ +++++|++++.||.|++||++    .....                            .....|..
T Consensus       158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRIN----SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESC----SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECC----CCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence            6899999999998 789999999999999999997    32222                            23334899


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883          325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL  404 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (498)
                      .|.+++|+  +++|++++.|+.|++||+++..........                    .......+..+..|...   
T Consensus       233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~---  287 (366)
T 3k26_A          233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP--------------------SESNVTILGRFDYSQCD---  287 (366)
T ss_dssp             CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT--------------------TCCCEEEEEEEECSSCC---
T ss_pred             eEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc--------------------CCcchheeccccccCCc---
Confidence            99999998  679999999999999999875432211000                    00001334455555422   


Q ss_pred             EEEEeccccCCC--CcEEEEEecCCeEEEEECCCCc----EEEEeccC--CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          405 IRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSGE----QVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       405 ~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h--~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                         ....+|+|+  +++|++|+.||.|++||+.+++    ....+..|  ...|++++|+|++++|++++.||.|++||+
T Consensus       288 ---v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          288 ---IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             ---SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             ---EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence               244578888  9999999999999999999875    45577777  799999999999999999999999999998


Q ss_pred             C
Q 010883          477 P  477 (498)
Q Consensus       477 ~  477 (498)
                      .
T Consensus       365 ~  365 (366)
T 3k26_A          365 L  365 (366)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.8e-40  Score=315.86  Aligned_cols=253  Identities=21%  Similarity=0.359  Sum_probs=219.8

Q ss_pred             cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883          172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  251 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~  251 (498)
                      ..+|..+|++++|+|++++|++|+.|+.|+|||+.+++......                +|...|.+++|+|++++|++
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~----------------~h~~~V~~v~~~~~~~~l~s  167 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK----------------GHTDSVQDISFDHSGKLLAS  167 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC----------------CCSSCEEEEEECTTSSEEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----------------ccCCcEEEEEEcCCCCEEEE
Confidence            35788899999999999999999999999999999887544332                57779999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883          252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS  331 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~  331 (498)
                      |+.|+.|++||+.+++++..+.+|...|.+++|+ +++++|++|+.|++|++||++    .+..+..+.+|...|.++.+
T Consensus       168 gs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~  242 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRP  242 (410)
T ss_dssp             EETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEE
T ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEeCCCccEEEEEE
Confidence            9999999999999999999999999999999998 788999999999999999998    78888999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883          332 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP  411 (498)
Q Consensus       332 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (498)
                      +|++.+|++++.|+.|++||+++.                                  .....+.+|.....  .+.|+|
T Consensus       243 ~~~g~~l~s~s~D~~v~vwd~~~~----------------------------------~~~~~~~~h~~~v~--~~~~~~  286 (410)
T 1vyh_C          243 NQDGTLIASCSNDQTVRVWVVATK----------------------------------ECKAELREHRHVVE--CISWAP  286 (410)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTC----------------------------------CEEEEECCCSSCEE--EEEECC
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCC----------------------------------ceeeEecCCCceEE--EEEEcC
Confidence            999999999999999999999873                                  33444455543222  222222


Q ss_pred             c----------------cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          412 V----------------YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       412 ~----------------~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      .                ...++.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd  366 (410)
T 1vyh_C          287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD  366 (410)
T ss_dssp             SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            1                111378999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 010883          476 FPGNGE  481 (498)
Q Consensus       476 ~~~~~~  481 (498)
                      +.....
T Consensus       367 ~~~~~~  372 (410)
T 1vyh_C          367 YKNKRC  372 (410)
T ss_dssp             CTTSCC
T ss_pred             CCCCce
Confidence            977653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.1e-39  Score=310.56  Aligned_cols=286  Identities=17%  Similarity=0.219  Sum_probs=237.0

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  212 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~  212 (498)
                      .++.++||++ ++||+|. |++|+|||+.+++... .....+|...|++++|+|+|++|++|+.|+.|+|||+.+++...
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            4678999986 5888775 8999999999986554 34556777889999999999999999999999999999987654


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeCCCCCE
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHL  291 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~  291 (498)
                      ...                +|...+.++.++  +..|++|+.|+.+++||..... .+..+.+|...+..+.|+ +++.+
T Consensus       184 ~~~----------------~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~  244 (420)
T 4gga_A          184 NMT----------------SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRH  244 (420)
T ss_dssp             EEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSE
T ss_pred             EEe----------------CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec-CCCCe
Confidence            432                466788888875  6799999999999999988644 456778999999999997 88999


Q ss_pred             EEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEE--EeCCCcEEEEeCCCCCCccccccCcccc
Q 010883          292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSY  368 (498)
Q Consensus       292 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~  368 (498)
                      +++++.|+.+++|+..........+.....|...|.+++|+|++. .+++  |+.|+.|++||+++              
T Consensus       245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t--------------  310 (420)
T 4gga_A          245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--------------  310 (420)
T ss_dssp             EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT--------------
T ss_pred             eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc--------------
Confidence            999999999999999855444556777888999999999999654 5554  45799999999987              


Q ss_pred             cccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe--cCCeEEEEECCCCcEEEEeccC
Q 010883          369 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSGEQVAALKYH  446 (498)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h  446 (498)
                                          +..+..+..+...   ..+    .|+++++.+++++  .|+.|+|||+.+++++..+.+|
T Consensus       311 --------------------~~~~~~~~~~~~v---~~~----~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          311 --------------------GACLSAVDAHSQV---CSI----LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             --------------------TEEEEEEECSSCE---EEE----EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             --------------------cccceeeccccce---eee----eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence                                3445555555432   222    4556788887765  6899999999999999999999


Q ss_pred             CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .+.|++++|+|+|++|+||+.||+|+|||+.....
T Consensus       364 ~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          364 TSRVLSLTMSPDGATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence            99999999999999999999999999999976543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-41  Score=327.02  Aligned_cols=324  Identities=15%  Similarity=0.213  Sum_probs=240.2

Q ss_pred             ccc-cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          125 WPV-DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       125 ~~l-~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      ..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+   +...... ....|...|++++|+|++++|++++.|+.
T Consensus        56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS-LTYDCSSTVTQITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS-EEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee-eeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence            345 78999999999999 999999999999999999876   4211111 11247779999999999999999999999


Q ss_pred             EEEEECC---CCceeccccccccccCccccccCCCCceecEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec
Q 010883          200 VHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK--FSTDGRELVAGSSDDCIYVYDLEANKLSLRILA  274 (498)
Q Consensus       200 i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~--~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~  274 (498)
                      |++||+.   +++........ ....+.+...   ++...+.++.  +++++.+|++|+.|+.|++||+.+++.+..+..
T Consensus       135 i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLNCE-CIRKINLKNF---GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEEEE-EEEEEEGGGG---SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEeccccCCceeeccccc-eeEEEEccCc---ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            9999995   44433322211 1111111110   1334677777  668999999999999999999999999999987


Q ss_pred             --cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEEEc----CCCCEEEEEeCCCcE
Q 010883          275 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSR----GDGRYLISNGKDQAI  347 (498)
Q Consensus       275 --~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~----~~~~~l~s~~~dg~i  347 (498)
                        |...|++++|+ +++.+|++|+.||.|++||++    .+..+..+. .|...|.+++|+    |++.+|++++.|+.|
T Consensus       211 ~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          211 SPRHGAVSSICID-EECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             CGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             CCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence              89999999998 789999999999999999998    777877775 788899999665    567899999999999


Q ss_pred             EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc--CceeEEEEEEEeccccCCCCcEEEEEec
Q 010883          348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG--HSVLRTLIRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~  425 (498)
                      ++||+++..........    ...+....+.+....+...      .+.+  |...  +    .+.+|+ ++++|++|+.
T Consensus       286 ~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~--v----~~l~~~-~~~~l~s~~~  348 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINS----DEQPSMEHFLPIEKGLEEL------NFCGIRSLNA--L----STISVS-NDKILLTDEA  348 (437)
T ss_dssp             EEEETTTTEEEEEEESS----SSCCCGGGGSCBCSSGGGC------CCCCCCSGGG--G----CCEEEE-TTEEEEEEGG
T ss_pred             EEEEcCCCcEEEEEEcC----CCCCccceecccccccccc------eecccccCCc--e----EEEEEC-CceEEEecCC
Confidence            99999875433222110    0111111222222111100      0112  2211  1    223455 6799999999


Q ss_pred             CCeEEEEECCCCcEEEEecc-------------------------------------CCCCeeeeEEcCC--CCeEEEEe
Q 010883          426 DSCVYVYDLVSGEQVAALKY-------------------------------------HTSPVRDCSWHPS--QPMLVSSS  466 (498)
Q Consensus       426 dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~v~~l~~sp~--~~~l~s~~  466 (498)
                      ||.|++||+.+++.+..+.+                                     |...|++++|+++  +.+|++|+
T Consensus       349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~  428 (437)
T 3gre_A          349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD  428 (437)
T ss_dssp             GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred             CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence            99999999999887666654                                     8899999999998  77999999


Q ss_pred             CCCcEEEec
Q 010883          467 WDGDVVRWE  475 (498)
Q Consensus       467 ~Dg~i~iw~  475 (498)
                      .||.|+||+
T Consensus       429 ~dG~I~iw~  437 (437)
T 3gre_A          429 NSGLIGIFQ  437 (437)
T ss_dssp             TTSCEEEEC
T ss_pred             CCceEEEeC
Confidence            999999995

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.9e-40  Score=311.96  Aligned_cols=297  Identities=15%  Similarity=0.189  Sum_probs=234.0

Q ss_pred             cccCCCCceEEEEEcCCCCEE-EEEEC---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC---CCeEEEEECCC
Q 010883          126 PVDQTTSRAYVSQFSADGSLF-VAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMSP  198 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~l-a~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~s~d~  198 (498)
                      .+.+|...|++++|+|++..+ ++|+.   |+.|+||++.++.......  ..|...|.+++|+|+   +++|++++.|+
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE--IEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE--EEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee--ecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            456799999999999999655 45655   8999999999886543322  256678999999998   69999999999


Q ss_pred             eEEEEECCCCc-eeccccccccccCccccccCCCCceecEEEEE------EcCCCCEEEEEeCCCeEEEEECCCCe-eeE
Q 010883          199 IVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLK------FSTDGRELVAGSSDDCIYVYDLEANK-LSL  270 (498)
Q Consensus       199 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~------~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~  270 (498)
                      .|++||+.+++ .....                .+|...|.++.      |+|++++|++++.||.|++||+.+++ .+.
T Consensus        91 ~i~iwd~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSV----------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             CEEEECTTSCSSCSEEE----------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred             eEEEEeCCCCCccEEEE----------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence            99999998876 22221                14667899995      56899999999999999999999887 677


Q ss_pred             EEeccCC----CeeEEEEe---CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC---CCCEEEE
Q 010883          271 RILAHTS----DVNTVCFG---DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLIS  340 (498)
Q Consensus       271 ~~~~~~~----~v~~~~~~---~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s  340 (498)
                      .+..|.+    .+.+++|.   .+++++|++++.||.|++||++    .... .....|...|.+++|+|   ++.+|++
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~  229 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----NMAL-RWETNIKNGVCSLEFDRKDISMNKLVA  229 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT----TTEE-EEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred             eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc----cCce-eeecCCCCceEEEEcCCCCCCCCEEEE
Confidence            7766554    89999842   2789999999999999999997    4444 44466889999999999   9999999


Q ss_pred             EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc-E
Q 010883          341 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-Y  419 (498)
Q Consensus       341 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~  419 (498)
                      ++.||.|++||+++......                             .....+.+|...  +    .+.+|+|+++ +
T Consensus       230 ~~~dg~i~i~d~~~~~~~~~-----------------------------~~~~~~~~~~~~--v----~~~~~~~~~~~~  274 (357)
T 3i2n_A          230 TSLEGKFHVFDMRTQHPTKG-----------------------------FASVSEKAHKST--V----WQVRHLPQNREL  274 (357)
T ss_dssp             EESTTEEEEEEEEEEETTTE-----------------------------EEEEEEECCSSC--E----EEEEEETTEEEE
T ss_pred             ECCCCeEEEEeCcCCCcccc-----------------------------eeeeccCCCcCC--E----EEEEECCCCCcE
Confidence            99999999999987432211                             011123344422  2    2235667888 8


Q ss_pred             EEEEecCCeEEEEECCCC-------------------cEEEEeccCCCCeeeeEEcCCCCeEE-EEeCCCcEEEecCCCC
Q 010883          420 IYTGSHDSCVYVYDLVSG-------------------EQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGN  479 (498)
Q Consensus       420 l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~sp~~~~l~-s~~~Dg~i~iw~~~~~  479 (498)
                      |++++.||.|++||+.++                   +.+..+.+|..+|++++|+|++++|+ +++.||.|++|++...
T Consensus       275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            999999999999999754                   46777889999999999999999988 8999999999999765


Q ss_pred             C
Q 010883          480 G  480 (498)
Q Consensus       480 ~  480 (498)
                      .
T Consensus       355 ~  355 (357)
T 3i2n_A          355 N  355 (357)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.1e-40  Score=312.15  Aligned_cols=301  Identities=12%  Similarity=0.061  Sum_probs=221.9

Q ss_pred             CCceEEEEEcCCCCEEEEEECCC-------eEEEEECCCCe-------EEEEEeecCCCceeEEEEEeCCCCCeEEEEE-
Q 010883          131 TSRAYVSQFSADGSLFVAGFQAS-------QIRIYDVERGW-------KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-  195 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg-------~i~vw~~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-  195 (498)
                      .-||+|++|+|||++||+|+.|.       .|++|++..+.       ..........|...|.++++  +++.++++. 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence            45899999999999999998643       59999987642       11222345566677877766  455666654 


Q ss_pred             ----------CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEEC
Q 010883          196 ----------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDL  263 (498)
Q Consensus       196 ----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~  263 (498)
                                .|+.+++|++............  .     .......+...+.+++|+|||+++++++  .|+.|+|||+
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~  164 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS--V-----DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP  164 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE--E-----CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeee--e-----ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence                      4678999987654321111000  0     0011112344689999999999987654  6899999999


Q ss_pred             CCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee--EEeccccccEEEEEEcCCCCEEEEE
Q 010883          264 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--GVLMGHLEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~  341 (498)
                      .+++.+..+ .|...|.+++|+ |++++|++++.++.+.+|+.     .+..+  .....|...|.+++|+|++++++++
T Consensus       165 ~~~~~~~~~-~~~~~V~~v~fs-pdg~~l~s~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~  237 (365)
T 4h5i_A          165 SDLTEKFEI-ETRGEVKDLHFS-TDGKVVAYITGSSLEVISTV-----TGSCIARKTDFDKNWSLSKINFIADDTVLIAA  237 (365)
T ss_dssp             TTTEEEEEE-ECSSCCCEEEEC-TTSSEEEEECSSCEEEEETT-----TCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEe-CCCCceEEEEEc-cCCceEEeccceeEEEEEec-----cCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence            999998877 578899999998 88999999987665555544     34433  3445688899999999999999999


Q ss_pred             eCCC----cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883          342 GKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ  417 (498)
Q Consensus       342 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  417 (498)
                      +.|+    .+++|++.......                              .....+.+|...  +    .+.+|||||
T Consensus       238 s~d~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~~~--V----~~~~~Spdg  281 (365)
T 4h5i_A          238 SLKKGKGIVLTKISIKSGNTSV------------------------------LRSKQVTNRFKG--I----TSMDVDMKG  281 (365)
T ss_dssp             EESSSCCEEEEEEEEETTEEEE------------------------------EEEEEEESSCSC--E----EEEEECTTS
T ss_pred             ecCCcceeEEeecccccceecc------------------------------eeeeeecCCCCC--e----EeEEECCCC
Confidence            9887    58888876532100                              112334444422  2    234678899


Q ss_pred             cEEEEEecCCeEEEEECCCCcEEEEe-ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883          418 KYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       418 ~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      ++||+|+.|+.|+|||+.+++++..+ .+|..+|++++|+|||++|||++.|++|+||+++......
T Consensus       282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~  348 (365)
T 4h5i_A          282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANY  348 (365)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-
T ss_pred             CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCc
Confidence            99999999999999999999999875 7999999999999999999999999999999997654433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-40  Score=322.28  Aligned_cols=299  Identities=14%  Similarity=0.213  Sum_probs=243.5

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEE
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV  203 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iw  203 (498)
                      ..|...|++++|+|++++|++|+.||.|++|++.+   +..  .......|...|++++|+|+ +++|++++.|+.|++|
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN--SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC--EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc--chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            46899999999999999999999999999999987   221  22344678889999999998 8999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEecc------C
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH------T  276 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~------~  276 (498)
                      |+.+++.......       .+......+|...|.+++|+|+ +.+|++++.|+.|++||+.+++.+..+..+      .
T Consensus       142 d~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  214 (416)
T 2pm9_A          142 DMNKCTESPSNYT-------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK  214 (416)
T ss_dssp             BTTTTSSCTTTCC-------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred             ECCCCcccccccc-------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence            9988762110000       0000112357779999999998 789999999999999999999998888766      7


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCC---eEEEEcCccccCCC-ceeEEec-cccccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKG-KPAGVLM-GHLEGITFIDSRG-DGRYLISNGKDQAIKLW  350 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~-~~~~~~~-~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iw  350 (498)
                      ..|.+++|+|.+..+|++++.|+   .|++||++    .. .++..+. +|...|.+++|+| ++++|++++.|+.|++|
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w  290 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR----NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW  290 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT----STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCC----CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence            89999999855558999999999   99999998    43 5666777 8999999999999 99999999999999999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC-cEEEEEecCCeE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCV  429 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i  429 (498)
                      |+++                                  .+.+..+..|....      .+++|+|++ .+|++++.||.|
T Consensus       291 d~~~----------------------------------~~~~~~~~~~~~~v------~~~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          291 NPES----------------------------------AEQLSQFPARGNWC------FKTKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             CSSS----------------------------------CCEEEEEECSSSCC------CCEEECTTCTTEEEECCSSSEE
T ss_pred             eCCC----------------------------------CccceeecCCCCce------EEEEECCCCCCEEEEEecCCcE
Confidence            9987                                  35566666665322      234677788 899999999999


Q ss_pred             EEEECCCCcEEEEe-----------------------------------ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883          430 YVYDLVSGEQVAAL-----------------------------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       430 ~iwd~~~~~~~~~~-----------------------------------~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                      ++||+.++......                                   ..|..++++++|+|+|++|++++.||.|+||
T Consensus       331 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w  410 (416)
T 2pm9_A          331 EVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT  410 (416)
T ss_dssp             EEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred             EEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence            99999876532211                                   1167788899999999999999999999999


Q ss_pred             cCCCC
Q 010883          475 EFPGN  479 (498)
Q Consensus       475 ~~~~~  479 (498)
                      ++.+.
T Consensus       411 ~~~~~  415 (416)
T 2pm9_A          411 NPKIS  415 (416)
T ss_dssp             CCCCC
T ss_pred             EeccC
Confidence            99864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-39  Score=300.21  Aligned_cols=251  Identities=22%  Similarity=0.286  Sum_probs=220.5

Q ss_pred             ecCCCceeEEEEEeCCC----CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC
Q 010883          171 LAKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG  246 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~----~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g  246 (498)
                      ...+|...|.+++|+|+    +.+|++|+.|++|+||++.+++......+              .+|...|.+++|++++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l--------------~gh~~~v~~~~~~~~~   92 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL--------------EGHQLGVVSVDISHTL   92 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE--------------CCCSSCEEEEEECSSS
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee--------------ccCCCCEEEEEECCCC
Confidence            34678999999999985    57999999999999999977654322211              2678899999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883          247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI  326 (498)
Q Consensus       247 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v  326 (498)
                      .++++++.|+.|++||+.+++.+..+..|...+.+++|+ +++++|++|+.||.|++||++    .+.....+..|...|
T Consensus        93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~----~~~~~~~~~~~~~~v  167 (321)
T 3ow8_A           93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVE----SGKKEYSLDTRGKFI  167 (321)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETT----TCSEEEEEECSSSCE
T ss_pred             CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcC----CCceeEEecCCCceE
Confidence            999999999999999999999999999999999999998 889999999999999999998    777888888899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      .+++|+|++++|++++.|+.|++||+++                                  ++.+..+.+|....    
T Consensus       168 ~~~~~spdg~~lasg~~dg~i~iwd~~~----------------------------------~~~~~~~~~h~~~v----  209 (321)
T 3ow8_A          168 LSIAYSPDGKYLASGAIDGIINIFDIAT----------------------------------GKLLHTLEGHAMPI----  209 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCC----
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------------CcEEEEEcccCCce----
Confidence            9999999999999999999999999987                                  35666677766332    


Q ss_pred             EEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                        .+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||+|++||+..+.
T Consensus       210 --~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          210 --RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             --CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             --eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence              233677899999999999999999999999999999999999999999999999999999999999998654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.7e-39  Score=310.35  Aligned_cols=290  Identities=20%  Similarity=0.244  Sum_probs=233.4

Q ss_pred             CCCCceEE--EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883          129 QTTSRAYV--SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       129 ~h~~~v~~--~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      +|...+++  ++|++  ..+++++.|+.|++|++.++.......  ..|...|++++|+|++++|++++.||.|++||+.
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            66665444  55554  558888899999999999986554432  3367789999999999999999999999999999


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEeccCCCeeEEEEe
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTSDVNTVCFG  285 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~  285 (498)
                      +++......                +|...|.+++|  ++++|++|+.||.|++||+. ....+..+..|...|.+++|+
T Consensus       165 ~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  226 (401)
T 4aez_A          165 SQTKLRTMA----------------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR  226 (401)
T ss_dssp             TCCEEEEEC----------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CCeEEEEec----------------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence            877544332                46668999999  46799999999999999998 566677888999999999998


Q ss_pred             CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEEEe--CCCcEEEEeCCCCCCccccc
Q 010883          286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG--KDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~  362 (498)
                       +++.+|++|+.||.|++||++    ....+..+..|...|.+++|+|++. ++++++  .|+.|++||+++.       
T Consensus       227 -~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-------  294 (401)
T 4aez_A          227 -SDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-------  294 (401)
T ss_dssp             -TTSSEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-------
T ss_pred             -CCCCEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-------
Confidence             689999999999999999998    7788888999999999999999764 556654  7999999999873       


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE--ecCCeEEEEECCCCcEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG--SHDSCVYVYDLVSGEQV  440 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg~i~iwd~~~~~~~  440 (498)
                                                 ..+..+..+..   +    .+.+|+|++++++++  +.||.|++||+.+++..
T Consensus       295 ---------------------------~~~~~~~~~~~---v----~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          295 ---------------------------ARVNTVDAGSQ---V----TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             ---------------------------CEEEEEECSSC---E----EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred             ---------------------------CEEEEEeCCCc---E----EEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence                                       44444443322   2    233677799999995  48999999999986554


Q ss_pred             E--EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCcc
Q 010883          441 A--ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL  486 (498)
Q Consensus       441 ~--~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~  486 (498)
                      .  .+.+|...|.+++|+|++++|++++.||.|++|++..++......
T Consensus       341 ~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          341 KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            4  467899999999999999999999999999999999887655443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.1e-38  Score=292.62  Aligned_cols=300  Identities=17%  Similarity=0.222  Sum_probs=236.2

Q ss_pred             cccCCCCCccccC--CCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883          117 RYLPVNGPWPVDQ--TTS--RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV  192 (498)
Q Consensus       117 ~~~~~~~~~~l~~--h~~--~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  192 (498)
                      +++|..+...|++  +.+  ..++++||+++ +||+|. |++|+|||+.+++.+.. ....+|...|++++|+|++++|+
T Consensus         7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~   83 (318)
T 4ggc_A            7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLA   83 (318)
T ss_dssp             CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEE
T ss_pred             cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEE
Confidence            4555555555532  222  35789999986 777764 89999999999866554 35567888899999999999999


Q ss_pred             EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEE
Q 010883          193 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLR  271 (498)
Q Consensus       193 ~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~  271 (498)
                      +|+.|+.|++|++.+++......                +|...+.++.+  ++..+++++.++.+++|+..... .+..
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~~~~----------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~  145 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLRNMT----------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT  145 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE----------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             EEECCCcEEEeecCCceeEEEec----------------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE
Confidence            99999999999999987654433                35556766555  56789999999999999988764 4566


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE---EEEeCCCcEE
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL---ISNGKDQAIK  348 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l---~s~~~dg~i~  348 (498)
                      +.+|...+.++.+. +++++|++++.||.|++||++..............+...|.++.++|++..+   ++++.++.|+
T Consensus       146 ~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~  224 (318)
T 4ggc_A          146 LSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  224 (318)
T ss_dssp             EECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred             EcCccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence            77999999999997 8889999999999999999985544445566777788999999999976533   4667889999


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe--cC
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HD  426 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~d  426 (498)
                      +||.+...                                  ..........   +...    .++|++..+++++  .|
T Consensus       225 lwd~~~~~----------------------------------~~~~~~~~~~---v~~~----~~~~~~~~~~~~sg~~d  263 (318)
T 4ggc_A          225 IWNVCSGA----------------------------------CLSAVDAHSQ---VCSI----LWSPHYKELISGHGFAQ  263 (318)
T ss_dssp             EEETTTCC----------------------------------EEEEEECSSC---EEEE----EEETTTTEEEEEECTTT
T ss_pred             EEeccccc----------------------------------ccccccceee---eeee----eecccccceEEEEEcCC
Confidence            99988732                                  2222222221   1222    3455777777654  79


Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      +.|++||+.+++++..+.+|.+.|++++|+|++++|+||+.||+|+|||+...
T Consensus       264 ~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99999999999999999999999999999999999999999999999999754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.3e-39  Score=301.92  Aligned_cols=249  Identities=12%  Similarity=0.080  Sum_probs=206.3

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-EeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      ..|...|++++|+||+ .|++|+.||+|+|||+.+++.+.. .....+|...|++++|+|++++|++|+.|++|++||+.
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            4567889999999995 688999999999999998754433 23345788899999999999999999999999999999


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEE
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVC  283 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~  283 (498)
                      +++....+.                +|...|.+++|++++. +|++++.|+.|++||+.+++....+.  .|...+.+++
T Consensus       158 ~~~~~~~~~----------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          158 QQVVLSSYR----------------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             TTEEEEEEC----------------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             CCcEEEEEc----------------CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence            987654432                5778999999999884 78999999999999999998877764  4566799999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      |+|.++++|++|+.||.|++||++    .++++..+.+|...|++++|+|++ ++|++++.|++|+|||+++        
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--------  289 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--------  289 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESC----C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--------
T ss_pred             ecCCCCcceEEeccCCcEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Confidence            997788999999999999999998    788889999999999999999998 5799999999999999986        


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc-EEEEEecCCeEEEEECCCCc
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~  438 (498)
                                                 ..+..+.+|...  +.    +++|+|++. +|++++.|++|++|++.+..
T Consensus       290 ---------------------------~~~~~~~~H~~~--V~----~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          290 ---------------------------SELFRSQAHRDF--VR----DATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ---------------------------CEEEEECCCSSC--EE----EEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             ---------------------------CcEEEEcCCCCC--EE----EEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence                                       334556677643  22    335666775 67799999999999997754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-40  Score=320.60  Aligned_cols=293  Identities=15%  Similarity=0.260  Sum_probs=240.8

Q ss_pred             CCceEEEEEcCCCC-EEEEE----------ECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          131 TSRAYVSQFSADGS-LFVAG----------FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       131 ~~~v~~~~~s~dg~-~la~~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      ...|.+++|+|+|+ +||+|          +.|+.|+||++.++.... ......|...|++++|+|++++|++++.|+.
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-PIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-CSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-EEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            34688999999997 99999          889999999998764221 1222356778999999999999999999999


Q ss_pred             EEEEECCCCc----eeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe------e
Q 010883          200 VHIVDVGSGT----MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK------L  268 (498)
Q Consensus       200 i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~------~  268 (498)
                      |++|++.+..    ....                ..+|...|.+++|+|+ +++|++++.|+.|++||+.+++      .
T Consensus        91 v~vw~~~~~~~~~~~~~~----------------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  154 (416)
T 2pm9_A           91 LELYSTNEANNAINSMAR----------------FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT  154 (416)
T ss_dssp             EEEECCSSTTSCCCEEEE----------------CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC
T ss_pred             EEEeecccccccccchhh----------------ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc
Confidence            9999998721    1111                1247779999999998 8999999999999999999876      3


Q ss_pred             eEE---EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------cccEEEEEEcCCC-CEE
Q 010883          269 SLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDG-RYL  338 (498)
Q Consensus       269 ~~~---~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~~~~-~~l  338 (498)
                      ...   +..|...|.+++|+|..+.+|++++.||.|++||++    ..+.+..+..+      ...|.+++|+|++ .+|
T Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  230 (416)
T 2pm9_A          155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV  230 (416)
T ss_dssp             CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred             ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----CCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence            332   357899999999985448999999999999999998    67777777766      7889999999997 689


Q ss_pred             EEEeCCC---cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccC
Q 010883          339 ISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       339 ~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s  414 (498)
                      ++++.|+   .|++||+++...                                 .+..+. +|..  .+    .+++|+
T Consensus       231 ~~~~~d~~~~~i~~~d~~~~~~---------------------------------~~~~~~~~~~~--~v----~~~~~s  271 (416)
T 2pm9_A          231 ATATGSDNDPSILIWDLRNANT---------------------------------PLQTLNQGHQK--GI----LSLDWC  271 (416)
T ss_dssp             EEEECCSSSCCCCEEETTSTTS---------------------------------CSBCCCSCCSS--CE----EEEEEC
T ss_pred             EEEECCCCCceEEEEeCCCCCC---------------------------------CcEEeecCccC--ce----eEEEeC
Confidence            9999998   999999987421                                 112222 3332  12    233566


Q ss_pred             C-CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCC-CeEEEEeCCCcEEEecCCCCCCCC
Q 010883          415 T-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       415 ~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      | ++++|++++.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.||.|++|++.......
T Consensus       272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred             CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence            6 89999999999999999999999999999999999999999999 799999999999999998876543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.9e-39  Score=301.89  Aligned_cols=291  Identities=20%  Similarity=0.272  Sum_probs=241.2

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      +..+|.+++|+|||++++++..++.+.+|.........   ....|...|++++|+|++++|++++ |+.|++|++.++.
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence            46789999999999999999888877777665542222   2236788999999999999999998 9999999998765


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCCeeEEEEeCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~  287 (498)
                      .........           ..+|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...|.+++|+ +
T Consensus        84 ~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~  151 (337)
T 1gxr_A           84 NKSPVSQLD-----------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-P  151 (337)
T ss_dssp             CCSCSEEEE-----------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-T
T ss_pred             ceeeeeccc-----------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-C
Confidence            432222111           11356689999999999999999999999999999887  566777899999999998 7


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      ++++|++++.||.|++||++    ..+.+..+..|...|.+++|+|++++|++++.|+.|++||+++.            
T Consensus       152 ~~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------  215 (337)
T 1gxr_A          152 DSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------------  215 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------
T ss_pred             CCCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC------------
Confidence            89999999999999999998    77888899999999999999999999999999999999999873            


Q ss_pred             ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883          368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT  447 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~  447 (498)
                                            +.+..+....   .+    .+++|+|++++|++++.++.|++||+.+++.. .+..|.
T Consensus       216 ----------------------~~~~~~~~~~---~v----~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~  265 (337)
T 1gxr_A          216 ----------------------RQLQQHDFTS---QI----FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE  265 (337)
T ss_dssp             ----------------------EEEEEEECSS---CE----EEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS
T ss_pred             ----------------------ceEeeecCCC---ce----EEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc
Confidence                                  3333332221   11    23367779999999999999999999988764 567899


Q ss_pred             CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ..|.+++|+|++++|++++.||.|++|++..+...
T Consensus       266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            99999999999999999999999999999876543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-40  Score=317.28  Aligned_cols=297  Identities=15%  Similarity=0.144  Sum_probs=221.4

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      ....+.++|++++|+|+|++||+|+.|+.|+||++.++. ........+|...|++++|+|++++|++++.|+.|++||+
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            345567899999999999999999999999999999873 1223345678889999999999999999999999999999


Q ss_pred             CCCc-eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEEec-cCCCee
Q 010883          206 GSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILA-HTSDVN  280 (498)
Q Consensus       206 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~  280 (498)
                      .+++ ......              ..+|...|.+++|+|++++|++++.|+.|++||+.+++   ....+.. |...|.
T Consensus        85 ~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~  150 (377)
T 3dwl_C           85 RPDGTWKQTLV--------------LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL  150 (377)
T ss_dssp             ----CCCCEEE--------------CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred             CCCCceeeeeE--------------ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence            8876 111111              12466799999999999999999999999999999887   3667777 999999


Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEcCccccC--------------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883          281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA  346 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~  346 (498)
                      +++|+ +++++|++++.|+.|++||++....              .+..+..+ +|...|.+++|+|++++|++++.|+.
T Consensus       151 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~  228 (377)
T 3dwl_C          151 SLDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS  228 (377)
T ss_dssp             EEEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred             EEEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence            99998 7889999999999999999852210              13455556 89999999999999999999999999


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD  426 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  426 (498)
                      |++||+++.....                              ..+..+.+|...  +    .+++|+|++++|++|+.+
T Consensus       229 i~iwd~~~~~~~~------------------------------~~~~~~~~~~~~--v----~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          229 VTIAYPSAPEQPP------------------------------RALITVKLSQLP--L----RSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             EC-CEECSTTSCE------------------------------EECCCEECSSSC--E----EEEEEEETTEEEEEESSS
T ss_pred             EEEEECCCCCCcc------------------------------eeeEeecCCCCc--e----EEEEEcCCCCEEEEEcCC
Confidence            9999998754211                              113334445432  2    233566799999999877


Q ss_pred             CeEEEEECCCCc------------------------------EE------EEe----------------ccCCCCeeeeE
Q 010883          427 SCVYVYDLVSGE------------------------------QV------AAL----------------KYHTSPVRDCS  454 (498)
Q Consensus       427 g~i~iwd~~~~~------------------------------~~------~~~----------------~~h~~~v~~l~  454 (498)
                      +.+ +|+.....                              .+      ..+                ..|...|++++
T Consensus       273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~  351 (377)
T 3dwl_C          273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLR  351 (377)
T ss_dssp             SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEE
T ss_pred             cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEe
Confidence            755 66654211                              00      011                13999999999


Q ss_pred             EcCCCC----eEEEEeCCCcEEEecC
Q 010883          455 WHPSQP----MLVSSSWDGDVVRWEF  476 (498)
Q Consensus       455 ~sp~~~----~l~s~~~Dg~i~iw~~  476 (498)
                      +.+...    .|+|++.||.|++||+
T Consensus       352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          352 PYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccCCCCCceEEEEeecCCCcEEEecC
Confidence            776543    5999999999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3e-38  Score=306.76  Aligned_cols=292  Identities=13%  Similarity=0.177  Sum_probs=233.8

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      .....+..| ..+....|+|++++||+|+.||.|++||+.++....   ....|...|++++|+|++++|++++.|+.|+
T Consensus        89 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~  164 (420)
T 3vl1_A           89 DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGEALISSSQDMQLK  164 (420)
T ss_dssp             ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCCEEEEEeCCCeEE
Confidence            334445555 555666899999999999999999999999874433   4467888999999999999999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec---cCCC
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSD  278 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~  278 (498)
                      +||+.+++......                +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..   |...
T Consensus       165 iwd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  228 (420)
T 3vl1_A          165 IWSVKDGSNPRTLI----------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG  228 (420)
T ss_dssp             EEETTTCCCCEEEE----------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC
T ss_pred             EEeCCCCcCceEEc----------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC
Confidence            99999876543322                4677999999999999999999999999999999998888874   4445


Q ss_pred             eeEEEE---------------------eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCC
Q 010883          279 VNTVCF---------------------GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGR  336 (498)
Q Consensus       279 v~~~~~---------------------~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~  336 (498)
                      |.+++|                     + +++++|++|+.||.|++||++    ....+..+ ..|...|.+++|+|++.
T Consensus       229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~  303 (420)
T 3vl1_A          229 VNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVF----SKEQTIQLPSKFTCSCNSLTVDGNNA  303 (420)
T ss_dssp             EEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETT----TCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred             ccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECC----CCceeEEcccccCCCceeEEEeCCCC
Confidence            555554                     4 678899999999999999998    55555555 45888999999999998


Q ss_pred             -EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccC
Q 010883          337 -YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       337 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s  414 (498)
                       +|++++.||.|++||+++..                                 ..+..+.. +.....   ..    +.
T Consensus       304 ~~l~~g~~dg~i~vwd~~~~~---------------------------------~~~~~~~~~~~~~v~---~~----~~  343 (420)
T 3vl1_A          304 NYIYAGYENGMLAQWDLRSPE---------------------------------CPVGEFLINEGTPIN---NV----YF  343 (420)
T ss_dssp             TEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEEESTTSCEE---EE----EE
T ss_pred             CEEEEEeCCCeEEEEEcCCCc---------------------------------CchhhhhccCCCCce---EE----Ee
Confidence             99999999999999998743                                 22333443 222111   11    22


Q ss_pred             CCCcEEEEEecCCeEEEEECCCC---------cEEEEeccCCCCeeeeEEcCCCC---eEEEEeCCCcEEEecCCC
Q 010883          415 TGQKYIYTGSHDSCVYVYDLVSG---------EQVAALKYHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~sp~~~---~l~s~~~Dg~i~iw~~~~  478 (498)
                      +++++|++++.||.|++||+...         .....+..|.+.|.+++|+|+++   .|++++.+|.+.+|++..
T Consensus       344 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          344 AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            36889999999999999998763         22234557889999999999999   788888999999999865

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.9e-38  Score=290.16  Aligned_cols=260  Identities=18%  Similarity=0.193  Sum_probs=206.7

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIV  203 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i~iw  203 (498)
                      .+.+|...|++++|+|+|++||+|+.|++|+||++..+.. .......+|...|.+++|+|+  +++|++++.|++|++|
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            4678999999999999999999999999999999975311 112244678889999999874  8999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCCe
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDV  279 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~v  279 (498)
                      |+.+++.......              .+|...|.+++|+|+  +.+|++++.|+.|++||+.++.  ....+.+|...|
T Consensus        83 d~~~~~~~~~~~~--------------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v  148 (297)
T 2pm7_B           83 KEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (297)
T ss_dssp             EBSSSCBCCCEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred             EcCCCceEEEEEe--------------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence            9987643222111              146678999999997  8899999999999999998763  235677999999


Q ss_pred             eEEEEeCC------------CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---CEEEEEeCC
Q 010883          280 NTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD  344 (498)
Q Consensus       280 ~~~~~~~~------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~d  344 (498)
                      .+++|+|.            ++++|++|+.|++|++||++...........+.+|...|.+++|+|++   .+|++++.|
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D  228 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD  228 (297)
T ss_dssp             EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence            99999853            257999999999999999972211122566788999999999999984   788888899


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS  424 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  424 (498)
                      ++|++||++....                                                            ..     
T Consensus       229 ~~v~iWd~~~~~~------------------------------------------------------------~~-----  243 (297)
T 2pm7_B          229 RTCIIWTQDNEQG------------------------------------------------------------PW-----  243 (297)
T ss_dssp             SCEEEEEESSTTS------------------------------------------------------------CC-----
T ss_pred             CcEEEEEeCCCCC------------------------------------------------------------cc-----
Confidence            9999998764110                                                            00     


Q ss_pred             cCCeEEEEECCCCcEEEEe--ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          425 HDSCVYVYDLVSGEQVAAL--KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       425 ~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                                    ....+  ..|...|.+++|+|++++|++++.||.|++|+....
T Consensus       244 --------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          244 --------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             --------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             --------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence                          00011  346788999999999999999999999999998643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.9e-39  Score=304.03  Aligned_cols=282  Identities=14%  Similarity=0.158  Sum_probs=197.9

Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC------CCeEEEEECCCCc
Q 010883          136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------SPIVHIVDVGSGT  209 (498)
Q Consensus       136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~------d~~i~iwd~~~~~  209 (498)
                      .+.+.+++.++.+ ..+.....|++...       ....|...|++++|+|||++|++++.      |+.|++|+..++.
T Consensus        10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~   81 (357)
T 4g56_B           10 GVDLGTENLYFQS-NGSSKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA   81 (357)
T ss_dssp             --------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred             CCCCCccceEEec-CCCccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence            3455666655444 44667889987643       22468889999999999999999997      7789999988765


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----EEeccCCCeeEEEEe
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFG  285 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~  285 (498)
                      .........            .+|...|.+++|+|+++ +++++.||.|+|||+.+++...    ...+|...|++++|+
T Consensus        82 ~~~~~~~~~------------~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s  148 (357)
T 4g56_B           82 PNESLCTAG------------VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF  148 (357)
T ss_dssp             -CGGGCSEE------------EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC
T ss_pred             cceeEeccc------------CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC
Confidence            433222111            13556899999999986 6677889999999998876532    344799999999998


Q ss_pred             CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                       +++++|++|+.||.|++||++    .++.+..+.+|...|++++|+|++. ++++++.|+.|++||+++.......   
T Consensus       149 -pdg~~l~sgs~dg~v~iwd~~----~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---  220 (357)
T 4g56_B          149 -SDGTQAVSGGKDFSVKVWDLS----QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---  220 (357)
T ss_dssp             -SSSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---
T ss_pred             -CCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---
Confidence             789999999999999999998    7888999999999999999999875 7899999999999999875432211   


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC-CcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                                     ..+.....+..+    +|+|+ +.+|++|+.|+.|++||+.+++.+..+
T Consensus       221 -------------------------------~~~~~~~~v~~v----~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~  265 (357)
T 4g56_B          221 -------------------------------DFCASDTIPTSV----TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS  265 (357)
T ss_dssp             -------------------------------CCTTCCSCEEEE----EECTTSTTEEEEEESSSCEEEEESSCGGGCEEE
T ss_pred             -------------------------------eeccccccccch----hhhhcccceEEEeecccceeEEECCCCcEeEEE
Confidence                                           111111122233    44555 678999999999999999999999999


Q ss_pred             ccCCCCeeeeEEcCCC-CeEEEEeCCCcEEEecCCCCCC
Q 010883          444 KYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       444 ~~h~~~v~~l~~sp~~-~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .+|...|++++|+|++ ++|++++.||+|+|||+..++.
T Consensus       266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV  304 (357)
T ss_dssp             CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred             eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            9999999999999997 5899999999999999987643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-37  Score=341.94  Aligned_cols=335  Identities=20%  Similarity=0.247  Sum_probs=264.8

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+.+|.+.|++++|+|||++||+|+.||+|+|||+.++..+..   ..+|...|.+++|+|++++|++++.|+.|++|
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKVKIW  684 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE---eccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            346779999999999999999999999999999999999866554   35788899999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT  281 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  281 (498)
                      |+.+++......                +|...|.+++|+|  ++.++++|+.|+.|++||+.+++....+.+|...|++
T Consensus       685 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          685 DSATGKLVHTYD----------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred             ECCCCceEEEEc----------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence            999887654432                4667899999999  5568999999999999999999999999999999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccC--------------------------------------------------
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------------------------------------------  311 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------------------------------------  311 (498)
                      ++|+ +++++|++++.||.|++||++....                                                  
T Consensus       749 ~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~  827 (1249)
T 3sfz_A          749 CRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH  827 (1249)
T ss_dssp             EEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred             EEEe-cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence            9998 7899999999999999999863210                                                  


Q ss_pred             CCceeE-EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC-CCC
Q 010883          312 KGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCD  389 (498)
Q Consensus       312 ~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  389 (498)
                      .+.... ...+|...|.+++|+|+++++++++.|+.|++||+.+........    .....+..+.+.+++..+.. ..+
T Consensus       828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~----~h~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR----GHLSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC----CCccceEEEEECCCCCEEEEEeCC
Confidence            000111 112678889999999999999999999999999998754433221    12223344445554433322 223


Q ss_pred             ceEEEEccCc----------------------------------------eeE--EEEEEEeccccCCCCcEEEEEecCC
Q 010883          390 QSVATYKGHS----------------------------------------VLR--TLIRCHFSPVYSTGQKYIYTGSHDS  427 (498)
Q Consensus       390 ~~~~~~~~~~----------------------------------------~~~--~~~~~~~~~~~s~~~~~l~~g~~dg  427 (498)
                      ..+..+....                                        ...  .......+.+++|+++++++|+.+|
T Consensus       904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g  983 (1249)
T 3sfz_A          904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG  983 (1249)
T ss_dssp             SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence            3344332110                                        000  0000123446888999999999999


Q ss_pred             eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          428 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       428 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++.++...
T Consensus       984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp             CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred             CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence            9999999999999999999999999999999999999999999999999876544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-37  Score=290.43  Aligned_cols=248  Identities=20%  Similarity=0.299  Sum_probs=213.9

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|...|++++|+|++++|++++.|+.|++||+.+++......                .|...|.+++|+|++++|+
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~  113 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP----------------LRSSWVMTCAYAPSGNYVA  113 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----------------CSSSCEEEEEECTTSSEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee----------------cCCccEEEEEECCCCCEEE
Confidence            446788899999999999999999999999999998877544332                3555899999999999999


Q ss_pred             EEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883          251 AGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI  326 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v  326 (498)
                      +|+.|+.|++||+.+.    .....+.+|...|.++.|+ +++ .+++++.|++|++||++    .+..+..+.+|...|
T Consensus       114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~d~~i~~wd~~----~~~~~~~~~~h~~~v  187 (340)
T 1got_B          114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDN-QIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDV  187 (340)
T ss_dssp             EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE-ETT-EEEEEETTSCEEEEETT----TTEEEEEECCCSSCE
T ss_pred             EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC-CCC-cEEEEECCCcEEEEECC----CCcEEEEEcCCCCce
Confidence            9999999999999875    3456677999999999997 444 58899999999999998    788889999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      .+++|+|++++|++++.|+.|++||+++                                  +..+..+.+|.....   
T Consensus       188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~----------------------------------~~~~~~~~~h~~~v~---  230 (340)
T 1got_B          188 MSLSLAPDTRLFVSGACDASAKLWDVRE----------------------------------GMCRQTFTGHESDIN---  230 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCCSSCEE---
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------------CeeEEEEcCCcCCEE---
Confidence            9999999999999999999999999987                                  355666777764322   


Q ss_pred             EEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                         +.+|+|++++|++|+.||.|++||+.+++.+..+..  +...|++++|+|++++|++|+.||.|++||+....
T Consensus       231 ---~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          231 ---AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             ---EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ---EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence               236777999999999999999999999988877752  33579999999999999999999999999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-38  Score=309.91  Aligned_cols=284  Identities=15%  Similarity=0.215  Sum_probs=229.2

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  212 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~  212 (498)
                      .+++++|+|+|++|++++.|+.|++||+.++...   .....+ ..+....|+|++++|++++.|+.|++||+.+++...
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  133 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE  133 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee---eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence            4557899999999999999999999999875221   122233 345566789999999999999999999998876644


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  292 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  292 (498)
                      ...                +|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|
T Consensus       134 ~~~----------------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l  196 (420)
T 3vl1_A          134 IDQ----------------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNV  196 (420)
T ss_dssp             ETT----------------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEE
T ss_pred             ecc----------------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEE
Confidence            322                477799999999999999999999999999999999999999999999999998 789999


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEEecc---ccccEEE---------------------EEEcCCCCEEEEEeCCCcEE
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMG---HLEGITF---------------------IDSRGDGRYLISNGKDQAIK  348 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~v~~---------------------l~~~~~~~~l~s~~~dg~i~  348 (498)
                      ++++.||.|++||++    .++.+..+..   |...+.+                     ++|+|++++|++++.||.|+
T Consensus       197 ~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  272 (420)
T 3vl1_A          197 LSASLDGTIRLWECG----TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT  272 (420)
T ss_dssp             EEEETTSCEEEEETT----TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred             EEEcCCCcEEEeECC----CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence            999999999999998    6777777764   3334444                     45578999999999999999


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCc-EEEEEecC
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQK-YIYTGSHD  426 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~d  426 (498)
                      +||+++.                                  ..+..+. .|..  .+    .+++|+|++. +|++|+.|
T Consensus       273 i~d~~~~----------------------------------~~~~~~~~~~~~--~v----~~~~~~~~~~~~l~~g~~d  312 (420)
T 3vl1_A          273 VHNVFSK----------------------------------EQTIQLPSKFTC--SC----NSLTVDGNNANYIYAGYEN  312 (420)
T ss_dssp             EEETTTC----------------------------------CEEEEECCTTSS--CE----EEEEECSSCTTEEEEEETT
T ss_pred             EEECCCC----------------------------------ceeEEcccccCC--Cc----eeEEEeCCCCCEEEEEeCC
Confidence            9999873                                  2233332 2332  22    2335677888 99999999


Q ss_pred             CeEEEEECCCCcE-EEEecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          427 SCVYVYDLVSGEQ-VAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 g~i~iwd~~~~~~-~~~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      |.|++||+.+++. +..+.. |...|+++.| +++++|++++.||.|++|++......
T Consensus       313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCC
Confidence            9999999998754 666765 6677888855 57889999999999999999875443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-37  Score=328.69  Aligned_cols=294  Identities=18%  Similarity=0.243  Sum_probs=251.1

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.++..+...   ..|...|++++|+|++++|++++.||.|++|
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE---ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            4567899999999999999999999999999999999998665543   3677799999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV  282 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~  282 (498)
                      |+.+++......                +|...|.+++|+|++++|++++.||.|++||+.++ .....+..|...|.++
T Consensus        83 ~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           83 NYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (814)
T ss_dssp             ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred             ECCCCcEEEEEe----------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence            999887654332                46668999999999999999999999999999987 6677788999999999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-ccEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      +|+|.++..|++++.||.|++||+.    .......+..+. ..+.+++|+|  ++.+|++++.||.|++||+++     
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----  217 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-----  217 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-----
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence            9995488999999999999999997    555555555544 8899999999  999999999999999999987     


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                                                   +..+..+.+|....      ..++|+|++.+|++++.||.|++||+.+++.
T Consensus       218 -----------------------------~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  262 (814)
T 3mkq_A          218 -----------------------------KSCVATLEGHMSNV------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV  262 (814)
T ss_dssp             -----------------------------TEEEEEEECCSSCE------EEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred             -----------------------------CcEEEEEcCCCCCE------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence                                         35566666665322      2235677999999999999999999999999


Q ss_pred             EEEeccCCCCeeeeEEcCCCCe-EEEEeCCCcEEEecCCCCC
Q 010883          440 VAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       440 ~~~~~~h~~~v~~l~~sp~~~~-l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +..+..|...|.+++|+|++.. +++++.|+.+.+|++....
T Consensus       263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence            9999999999999999999973 3455557778899886543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.4e-38  Score=297.16  Aligned_cols=311  Identities=14%  Similarity=0.086  Sum_probs=224.4

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV  200 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i  200 (498)
                      ...+.+|.+.|++++|+|++++||+|+.||.|++||+.++... .......+|...|++++|+|  ++++|++++.|+.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3456899999999999999999999999999999999875321 22233457888999999999  69999999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeeEEEe-----
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRIL-----  273 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~~~~~~~-----  273 (498)
                      ++||+.+++..........       .....+|...|.+++|+|+  +.+|++++.||.|++||+.+++.+..+.     
T Consensus        84 ~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  156 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNK-------LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM  156 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEE-------EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred             EEEecCCCcccccccCcce-------eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence            9999988643211100000       0011246779999999999  9999999999999999998876543332     


Q ss_pred             --------ccCCCeeEEEEeCC--CCCEEEEeeCCCeEEEEcCccccCCCc--eeEEeccccccEEEEEEcCCC----CE
Q 010883          274 --------AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDG----RY  337 (498)
Q Consensus       274 --------~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~----~~  337 (498)
                              .|...+.+++|+|.  ++.++++++.|+.+.+|+..    ...  .+..+.+|...|++++|+|++    ++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~  232 (351)
T 3f3f_A          157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK----DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL  232 (351)
T ss_dssp             ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT----TSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred             cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC----CCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence                    57889999999843  48899999999999888876    333  367788899999999999998    89


Q ss_pred             EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883          338 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ  417 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  417 (498)
                      |++++.||.|++||++........                                  ....  .........+......
T Consensus       233 l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~~--~~~~~~~~~~~~~~~~  276 (351)
T 3f3f_A          233 IATGCKDGRIRIFKITEKLSPLAS----------------------------------EESL--TNSNMFDNSADVDMDA  276 (351)
T ss_dssp             EEEEETTSCEEEEEEEECC-------------------------------------------------------------
T ss_pred             EEEEcCCCeEEEEeCCCCcCcccc----------------------------------CCcc--cceeccCCCccccccc
Confidence            999999999999999864321110                                  0000  0000000111111111


Q ss_pred             cEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          418 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       418 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .....+.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             --------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             ccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence            1223334455677888777888999999999999999999999999999999999999987643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-38  Score=330.92  Aligned_cols=203  Identities=12%  Similarity=0.114  Sum_probs=173.8

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      .+|...|++++|+|+|++||+|+.||.|+||+..+.+....    ..|...|.+++|+| +++|++++.|+.|++||+.+
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~----~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK----LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE----CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE----cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            57899999999999999999999999999999987644322    24667899999999 88999999999999999998


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-----------EEEeccC
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRILAHT  276 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-----------~~~~~~~  276 (498)
                      ++......                 |...|++++|+|++++|++|+.||.|++||+.+++..           ..+.+|.
T Consensus        89 ~~~~~~~~-----------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           89 QKVLTTVF-----------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             CSEEEEEE-----------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             CcEEEEEc-----------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence            87644332                 2237999999999999999999999999999988763           1234688


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------------------cccEEEEEEcCCCCEE
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------------LEGITFIDSRGDGRYL  338 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~l  338 (498)
                      +.|.+++|+|.++..|++|+.||.| +||++    ..+.+..+..|                  ...|++++|+|+|++|
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l  226 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLV----ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI  226 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETT----TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECC----CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence            9999999996567899999999999 99998    66777666655                  5779999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCC
Q 010883          339 ISNGKDQAIKLWDIRKMSS  357 (498)
Q Consensus       339 ~s~~~dg~i~iwd~~~~~~  357 (498)
                      ++++.|+.|++||+++...
T Consensus       227 asgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          227 ITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEEETTCCEEEEETTTCCE
T ss_pred             EEEECCCeEEEEECCCCcE
Confidence            9999999999999987543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.2e-38  Score=305.90  Aligned_cols=310  Identities=15%  Similarity=0.246  Sum_probs=225.8

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--------EEEEeecCCCc------------eeEEEEEeCCCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLR------------WTVTDTSLSPDQ  188 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~------------~~v~~~~~sp~~  188 (498)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.++..        ........+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4678999999999999999999999999999987642        11122334666            789999999998


Q ss_pred             --CeEEEEECCCeEEEEECCCCceecccccccccc----------Ccccc--------------ccCCCCceecEEEEEE
Q 010883          189 --RHLVYASMSPIVHIVDVGSGTMESLANVTEIHD----------GLDFS--------------AADDGGYSFGIFSLKF  242 (498)
Q Consensus       189 --~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~--------------~~~~~~h~~~i~~~~~  242 (498)
                        .+|++++.|+.|++|++.++.............          .+.++              .....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              799999999999999997654321100000000          00000              0012468889999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCe-eeEE-------EeccCCCeeEEEEeCCCC-CEEEEeeCCCeEEEEcCccccCCC
Q 010883          243 STDGRELVAGSSDDCIYVYDLEANK-LSLR-------ILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVWDRRCLNVKG  313 (498)
Q Consensus       243 s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~-------~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~  313 (498)
                      +|++++|++| .|+.|++||+.+.. ....       +..|...|.+++|+ +++ ++|++|+.||.|++||++......
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9999999998 79999999998443 3332       44899999999998 555 999999999999999998332222


Q ss_pred             ceeEEeccccc------------cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883          314 KPAGVLMGHLE------------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA  381 (498)
Q Consensus       314 ~~~~~~~~~~~------------~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (498)
                      ..+..+..|..            .|.+++|+|++++|++++. +.|++||++...                         
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~-------------------------  317 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN-------------------------  317 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS-------------------------
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc-------------------------
Confidence            22677887776            8999999999999999999 999999998621                         


Q ss_pred             ccccCCCCceEEEEccCceeEE---------EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--------
Q 010883          382 RDLKHPCDQSVATYKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--------  444 (498)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------  444 (498)
                              ..+..+.+|.....         .....+..+|+|++++|++|+.||.|++||+.+++.+. +.        
T Consensus       318 --------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~  388 (447)
T 3dw8_B          318 --------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKP  388 (447)
T ss_dssp             --------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCT
T ss_pred             --------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccc
Confidence                    12222233321100         00001224678899999999999999999999988763 22        


Q ss_pred             -------------------------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          445 -------------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       445 -------------------------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                                               .+...|.+++|+|++++||+++.|+ +++|.-
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence                                     2345688999999999999998876 777764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.9e-37  Score=314.91  Aligned_cols=334  Identities=16%  Similarity=0.172  Sum_probs=254.2

Q ss_pred             CCCccccCCCCc-eEEEEEcC--CCCEEEEEECCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883          122 NGPWPVDQTTSR-AYVSQFSA--DGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLV  192 (498)
Q Consensus       122 ~~~~~l~~h~~~-v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  192 (498)
                      .....+.+|... |++++|+|  ++++||+|+.||.|+|||+.++      .. ........|...|.+++|+|++++|+
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV-NVKSEFQVLAGPISDISWDFEGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE-EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccc-cccchhhcccccEEEEEEeCCCCEEE
Confidence            455678899999 99999999  9999999999999999999754      11 12223345777999999999999999


Q ss_pred             EEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 010883          193 YASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       193 ~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~  267 (498)
                      +++.+    +.|++||.  ++.....                .+|...|.+++|+|+++ .+++++.|+.|++||+.+++
T Consensus       133 ~~~~~~~~~~~v~~~d~--~~~~~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~  194 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWDS--GNSLGEV----------------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK  194 (615)
T ss_dssp             EEECCSSCSEEEEETTT--CCEEEEC----------------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             EeccCCCCccEEEEEEC--CCcceee----------------ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence            99987    68888883  3322221                14677999999999998 89999999999999999999


Q ss_pred             eeEEEeccCC---CeeEEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEe-c---cccccEEEEEEcCCCCEEE
Q 010883          268 LSLRILAHTS---DVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M---GHLEGITFIDSRGDGRYLI  339 (498)
Q Consensus       268 ~~~~~~~~~~---~v~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~l~  339 (498)
                      .+..+..|..   .|.+++|+ ++ +++|++++.||.|++||++    .++.+..+ .   .|...|.+++|+ ++++|+
T Consensus       195 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~  268 (615)
T 1pgu_A          195 FSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA  268 (615)
T ss_dssp             EEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT----TCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred             eeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC----CCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence            9999999999   99999998 66 9999999999999999998    77888888 5   899999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCCCccccccCc-------------------------cccccc-----------------------
Q 010883          340 SNGKDQAIKLWDIRKMSSNASCNLGF-------------------------RSYEWD-----------------------  371 (498)
Q Consensus       340 s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~-----------------------  371 (498)
                      +++.|+.|++||+++...........                         ....|+                       
T Consensus       269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  348 (615)
T 1pgu_A          269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN  348 (615)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETT
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEec
Confidence            99999999999998754332221110                         000000                       


Q ss_pred             --------------------------ceeecCCcCcccccCCCC------------------------------------
Q 010883          372 --------------------------YRWMDYPPQARDLKHPCD------------------------------------  389 (498)
Q Consensus       372 --------------------------~~~~~~~~~~~~~~~~~~------------------------------------  389 (498)
                                                +..+.+++....+....+                                    
T Consensus       349 ~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  428 (615)
T 1pgu_A          349 PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD  428 (615)
T ss_dssp             TTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred             CcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence                                      000111101111100011                                    


Q ss_pred             --------------------------------------ceEEEEccCceeE------EEEEEEeccccCCCCcEEEEEec
Q 010883          390 --------------------------------------QSVATYKGHSVLR------TLIRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       390 --------------------------------------~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~g~~  425 (498)
                                                            ..+..+.......      .......+++|+|++++|++++.
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  508 (615)
T 1pgu_A          429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV  508 (615)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence                                                  1111111110000      00001233468899999999999


Q ss_pred             CCeEEEEECCCCcEEEEecc-CCCCeeeeEEcC----------CCCeEEEEeCCCcEEEecCCCCC
Q 010883          426 DSCVYVYDLVSGEQVAALKY-HTSPVRDCSWHP----------SQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       426 dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp----------~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ||.|++||+.+++.+..+.+ |...|++++|+|          ++++|++++.||.|++|++....
T Consensus       509 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  574 (615)
T 1pgu_A          509 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  574 (615)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence            99999999999999999988 999999999999          99999999999999999998864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=291.37  Aligned_cols=258  Identities=16%  Similarity=0.194  Sum_probs=210.8

Q ss_pred             ecCCCce-eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883          171 LAKSLRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  249 (498)
Q Consensus       171 ~~~~~~~-~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l  249 (498)
                      ...+|.. .|.+++|+|++++|++++.|+.|+|||+.++........             ..+|...|.+++|+|++++|
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp~g~~l   76 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-------------SEGHQRTVRKVAWSPCGNYL   76 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-------------CSSCSSCEEEEEECTTSSEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-------------ccccCCcEEEEEECCCCCEE
Confidence            3456665 899999999999999999999999999987654322111             12577799999999999999


Q ss_pred             EEEeCCCeEEEEECCCCe--eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883          250 VAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT  327 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  327 (498)
                      ++|+.|+.|++||+..+.  .+..+.+|...|.+++|+ +++++|++|+.|++|++||++... ....+..+.+|...|.
T Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A           77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVK  154 (345)
T ss_dssp             EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEE
T ss_pred             EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeE
Confidence            999999999999998764  567788999999999998 789999999999999999997321 2245667889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883          328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC  407 (498)
Q Consensus       328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (498)
                      +++|+|++++|++++.|+.|++||++...                                ......+.+|....     
T Consensus       155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~--------------------------------~~~~~~~~~h~~~v-----  197 (345)
T 3fm0_A          155 HVVWHPSQELLASASYDDTVKLYREEEDD--------------------------------WVCCATLEGHESTV-----  197 (345)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEEEETTE--------------------------------EEEEEEECCCSSCE-----
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEecCCC--------------------------------EEEEEEecCCCCce-----
Confidence            99999999999999999999999987521                                02345666666432     


Q ss_pred             EeccccCCCCcEEEEEecCCeEEEEECCCC---------------cEEEEecc-CCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883          408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---------------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDV  471 (498)
Q Consensus       408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---------------~~~~~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i  471 (498)
                       .+++|+|++++|++|+.|+.|+|||....               +++..+.+ |...|.+++|+|++..|++++.|+.|
T Consensus       198 -~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i  276 (345)
T 3fm0_A          198 -WSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI  276 (345)
T ss_dssp             -EEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred             -EEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence             33467789999999999999999996321               33445554 88999999999999999999999999


Q ss_pred             EEecCCCCCC
Q 010883          472 VRWEFPGNGE  481 (498)
Q Consensus       472 ~iw~~~~~~~  481 (498)
                      ++|+......
T Consensus       277 ~vw~~~~~~~  286 (345)
T 3fm0_A          277 RVFQEDPNSD  286 (345)
T ss_dssp             EEEEECTTSC
T ss_pred             EEEEeCCCCC
Confidence            9999876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.7e-37  Score=300.36  Aligned_cols=285  Identities=26%  Similarity=0.386  Sum_probs=233.1

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      .+|...|+|++|  ++++|++|+.||.|++||+.+++....   ..+|...|.+++|  ++++|++|+.||.|++||+.+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE---EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            467788999887  899999999999999999999865543   3578889999999  789999999999999999998


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EEEeccCCCeeEEEE
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCF  284 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~  284 (498)
                      ++......                +|...|.+++|++  ..+++|+.||.|++||+.+++..   ..+.+|...|.+++|
T Consensus       203 ~~~~~~~~----------------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  264 (435)
T 1p22_A          203 GEMLNTLI----------------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF  264 (435)
T ss_dssp             CCEEEEEC----------------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred             CcEEEEEc----------------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence            87644332                4666899999974  58999999999999999987755   567789999999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                         ++++|++|+.||.|++||++    .+..+..+.+|...|.++.+  ++.++++|+.||.|++||+++          
T Consensus       265 ---~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~----------  325 (435)
T 1p22_A          265 ---DDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC----------  325 (435)
T ss_dssp             ---ETTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------
T ss_pred             ---CCCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC----------
Confidence               46799999999999999998    78889999999999999999  467999999999999999987          


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc------
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE------  438 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~------  438 (498)
                                              +..+..+.+|.......      .+  ++.+|++|+.||.|++||+.+++      
T Consensus       326 ------------------------~~~~~~~~~h~~~v~~~------~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  373 (435)
T 1p22_A          326 ------------------------GACLRVLEGHEELVRCI------RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA  373 (435)
T ss_dssp             ------------------------CCEEEEECCCSSCEEEE------EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred             ------------------------CCEEEEEeCCcCcEEEE------Ee--cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence                                    35667777776433322      22  68899999999999999998776      


Q ss_pred             ---EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccchhc
Q 010883          439 ---QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKR  490 (498)
Q Consensus       439 ---~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~  490 (498)
                         .+..+.+|.+.|++++|  ++.+|++++.||.|++||+.+............
T Consensus       374 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  426 (435)
T 1p22_A          374 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSP  426 (435)
T ss_dssp             TTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------------
T ss_pred             cchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCC
Confidence               88899999999999999  788999999999999999988765544443333

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.3e-36  Score=297.55  Aligned_cols=285  Identities=21%  Similarity=0.282  Sum_probs=241.8

Q ss_pred             ccccCCCCce-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          125 WPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       125 ~~l~~h~~~v-~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ..+.+|...| .|+.|  ++++|++|+.||.|++||+.+++.+..   ..+|...|.+++|+|++ +|++++.||.|++|
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            4678898885 66666  578999999999999999999865543   35788899999999988 99999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCee-------------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEANKL-------------  268 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~g~~l~~g~~dg~i~vwd~~~~~~-------------  268 (498)
                      |+.+++......                +|...|.+++|+  +++.+|++|+.|+.|++||+.++..             
T Consensus       189 d~~~~~~~~~~~----------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  252 (464)
T 3v7d_B          189 DIKKGCCTHVFE----------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  252 (464)
T ss_dssp             ETTTTEEEEEEC----------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred             ECCCCcEEEEEC----------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence            999887654332                466799999998  5788999999999999999987653             


Q ss_pred             ----------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE
Q 010883          269 ----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL  338 (498)
Q Consensus       269 ----------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  338 (498)
                                ...+.+|...|.++.   ++++++++|+.||.|++||++    ..+.+..+.+|...|.+++|+|++++|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l  325 (464)
T 3v7d_B          253 FHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRC  325 (464)
T ss_dssp             ESCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred             eeccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence                      445668888888885   457899999999999999998    788899999999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc
Q 010883          339 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK  418 (498)
Q Consensus       339 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  418 (498)
                      ++++.|+.|++||+++                                  ++.+..+.+|.......      .+  ++.
T Consensus       326 ~sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~v~~~------~~--~~~  363 (464)
T 3v7d_B          326 ISASMDTTIRIWDLEN----------------------------------GELMYTLQGHTALVGLL------RL--SDK  363 (464)
T ss_dssp             EEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCEEEE------EE--CSS
T ss_pred             EEEeCCCcEEEEECCC----------------------------------CcEEEEEeCCCCcEEEE------EE--cCC
Confidence            9999999999999987                                  46677777776543322      22  368


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       419 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      +|++++.||.|++||+.+++...... |...+..++|+|++++|++++ ||.|++||+.+++..
T Consensus       364 ~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          364 FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence            99999999999999999988776664 677888899999999999998 899999999887654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.2e-38  Score=296.32  Aligned_cols=292  Identities=13%  Similarity=0.109  Sum_probs=234.9

Q ss_pred             ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeEEEEEC
Q 010883          127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV  205 (498)
Q Consensus       127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i~iwd~  205 (498)
                      ..+|.+.|++++|+|++++|++++.|+.|+||++.++...........|...|++++|+|+++ +|++++.|+.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            357999999999999999999999999999999988751111222336777999999999999 9999999999999999


Q ss_pred             -CCCceeccccccccccCccccccCCCC--ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeeeEEEe
Q 010883          206 -GSGTMESLANVTEIHDGLDFSAADDGG--YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRIL  273 (498)
Q Consensus       206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~---------~~~~~~~~  273 (498)
                       .+++.....                 +  |...|.+++|+| +.+|++++.|+.|++||+.+         ++++..+.
T Consensus        87 ~~~~~~~~~~-----------------~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           87 IGSPSFQALT-----------------NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             SSSSSEEECB-----------------SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             ccCCceEecc-----------------ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence             877542211                 3  666899999999 99999999999999999987         66665554


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc-ccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC-LNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd  351 (498)
                       |...|.+++|+ +++  +++++.|+.|++||++. .  ..........|...|.+++|+| ++++|++++.||.|++|+
T Consensus       149 -~~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~  222 (342)
T 1yfq_A          149 -VKNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCE--DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF  222 (342)
T ss_dssp             -SCCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCT--TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred             -eCCceEEEEec-CCc--EEEEeCCCeEEEEECCccc--cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence             88999999998 444  99999999999999973 2  1223345556888999999999 999999999999999999


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-------eEEEEEEEeccccCCCCcEEEEEe
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-------LRTLIRCHFSPVYSTGQKYIYTGS  424 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~l~~g~  424 (498)
                      ++.......                            ......+..|..       ...+.    +.+|+|++++|++++
T Consensus       223 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~i~----~~~~s~~~~~l~~~~  270 (342)
T 1yfq_A          223 FDDQGDDYN----------------------------SSKRFAFRCHRLNLKDTNLAYPVN----SIEFSPRHKFLYTAG  270 (342)
T ss_dssp             CCTTCCSTT----------------------------CTTCEEEECCCCCTTCCSSCCCEE----EEEECTTTCCEEEEE
T ss_pred             EcCCCcccc----------------------------cccceeeecccccccccccceeEE----EEEEcCCCCEEEEec
Confidence            987410000                            022333444432       11222    336677999999999


Q ss_pred             cCCeEEEEECCCCcEEEEeccC-CCCeeeeEEcCCCCeEEEEeCCCc-EEEecC
Q 010883          425 HDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWDGD-VVRWEF  476 (498)
Q Consensus       425 ~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~~~Dg~-i~iw~~  476 (498)
                      .||.|++||+.+++.+..+.+| ..+|++++  |++++|++++.||. .+.|..
T Consensus       271 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          271 SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             TTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             CCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            9999999999999999999998 99999999  99999999999998 666665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-38  Score=314.77  Aligned_cols=294  Identities=11%  Similarity=0.040  Sum_probs=218.7

Q ss_pred             cccCCCCceEEEEEcCC------CCEEEEEECCCeEEEEECCCCeEE-----E---EEeecCCCceeEEEEEeCCCCCeE
Q 010883          126 PVDQTTSRAYVSQFSAD------GSLFVAGFQASQIRIYDVERGWKI-----Q---KDILAKSLRWTVTDTSLSPDQRHL  191 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~d------g~~la~~~~dg~i~vw~~~~~~~~-----~---~~~~~~~~~~~v~~~~~sp~~~~l  191 (498)
                      .+.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.++...     .   ......+|...|++++|+|++ .|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence            35678899999999997      579999999999999999876311     0   011345677899999999864 89


Q ss_pred             EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEE--EEcCCC-CEEEEEeCCCeEEEEECCCCee
Q 010883          192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL--KFSTDG-RELVAGSSDDCIYVYDLEANKL  268 (498)
Q Consensus       192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~--~~s~~g-~~l~~g~~dg~i~vwd~~~~~~  268 (498)
                      ++|+.||+|++||+.++..... .              ..+|...|.++  +|+|++ .+|++|+.|++|+|||+.+++.
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~-~--------------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSF-Y--------------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSE-E--------------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             EEEeCCCEEEEEECCCCCCceE-E--------------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            9999999999999986532110 0              01477799999  578888 8999999999999999999887


Q ss_pred             eEEEeccCC--CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883          269 SLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA  346 (498)
Q Consensus       269 ~~~~~~~~~--~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~  346 (498)
                      ...+.+|..  .|.+++|+ |++..|++++.|++|++||++    ....+..+.+|...|++++|+|++++|++|+.|++
T Consensus       346 ~~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt  420 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS  420 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred             ccccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCceEEEEeCCCCCeEEEEECCCE
Confidence            777777754  58899998 778899999999999999998    66777788899999999999999999999999999


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD  426 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  426 (498)
                      |++||+......                                   .+..... .......+..+|+|++..+. .. +
T Consensus       421 v~lwd~~~~~~~-----------------------------------~~~~~~~-~~~~~~v~~v~~sp~g~~~~-~~-~  462 (524)
T 2j04_B          421 LIITNAARRLLH-----------------------------------GIKNSSA-TQKSLRLWKWDYSIKDDKYR-ID-S  462 (524)
T ss_dssp             EECCBSCSSTTT-----------------------------------CC-------CCCCEEEECBCCSSSCEEE-EC-C
T ss_pred             EEEEechHhhcc-----------------------------------ccccCcc-ceeeeEEEEeccCCCCCeEE-cc-C
Confidence            999998642100                                   0000000 00001234568888988552 22 2


Q ss_pred             CeEEEEECC-CCcEEEEeccCCCCeeeeEEcCCCC---eEEEEeCCCcEEEecCCCC
Q 010883          427 SCVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       427 g~i~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~---~l~s~~~Dg~i~iw~~~~~  479 (498)
                       .+.+|+.. ++..+..+.+|...|.+++|+|+++   +||+|+.||.|+||++...
T Consensus       463 -~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          463 -SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             -CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             -CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence             23444433 5777888999999999999999965   9999999999999998764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.5e-37  Score=291.55  Aligned_cols=306  Identities=13%  Similarity=0.100  Sum_probs=238.1

Q ss_pred             cCCCCCccccCCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883          119 LPVNGPWPVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA  194 (498)
Q Consensus       119 ~~~~~~~~l~~h~~~v~~~~~s~d---g~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  194 (498)
                      .|......+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+..  ....|...|++++|+|++++|+++
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEEE
Confidence            355555678999999999999999   69999999999999999987 544433  234577799999999999999999


Q ss_pred             ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883          195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEANKLSLRI  272 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  272 (498)
                      +.|+.|++||+.+++.....                 +|...|.+++|  +|++++|++++.||.|++||+.+++.+..+
T Consensus       105 ~~dg~v~iwd~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  167 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQIA-----------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL  167 (368)
T ss_dssp             ETTSEEEEEETTTTEEEEEE-----------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred             cCCCcEEEEEcCCCCceeec-----------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence            99999999999988765432                 25568999999  899999999999999999999999988888


Q ss_pred             eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCE----EEEEeCCCcE
Q 010883          273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRY----LISNGKDQAI  347 (498)
Q Consensus       273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~----l~s~~~dg~i  347 (498)
                      ..+. .+.++.+.   ...+++++.++.+++|+++..   ....... ..+...+.++.+.++...    +++++.|+.|
T Consensus       168 ~~~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          168 QLPE-RCYCADVI---YPMAVVATAERGLIVYQLENQ---PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             ECSS-CEEEEEEE---TTEEEEEEGGGCEEEEECSSS---CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred             ecCC-CceEEEec---CCeeEEEeCCCcEEEEEeccc---cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence            6654 67777775   347889999999999999722   1111221 223345566666554443    9999999999


Q ss_pred             EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE------EEEEEEeccccCCCCcEEE
Q 010883          348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR------TLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~  421 (498)
                      ++||++.....                               ..+..+..|....      .......+.+|+|++++|+
T Consensus       241 ~i~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  289 (368)
T 3mmy_A          241 AIHYINPPNPA-------------------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA  289 (368)
T ss_dssp             EEEESSCSCHH-------------------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE
T ss_pred             EEEecCCCCcc-------------------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEE
Confidence            99999874210                               2233334433210      0000123446777999999


Q ss_pred             EEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +++.||.|++||+.+++++..+..|..+|++++|+|++++|++++.|+..+.|++...+.
T Consensus       290 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~  349 (368)
T 3mmy_A          290 TVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK  349 (368)
T ss_dssp             EEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred             EEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence            999999999999999999999999999999999999999999999999877777665443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.9e-36  Score=281.23  Aligned_cols=255  Identities=20%  Similarity=0.261  Sum_probs=213.5

Q ss_pred             EEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC
Q 010883          166 IQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST  244 (498)
Q Consensus       166 ~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~  244 (498)
                      +.......+|.+.|++++|+|++ ++|++++.|++|++|++...........           ....+|...|.+++|+|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~-----------~~~~~h~~~v~~~~~s~   75 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-----------RSFKGHSHIVQDCTLTA   75 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE-----------EEEECCSSCEEEEEECT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc-----------eEEeCCcccEEEEEECC
Confidence            33444567899999999999965 8999999999999999864322110000           01125788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883          245 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE  324 (498)
Q Consensus       245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  324 (498)
                      ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.|++|++||++     +..+..+.+|..
T Consensus        76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~h~~  149 (319)
T 3frx_A           76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK-----GQCLATLLGHND  149 (319)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-----SCEEEEECCCSS
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-----CCeEEEEeccCC
Confidence            99999999999999999999999999999999999999998 789999999999999999984     567788899999


Q ss_pred             cEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883          325 GITFIDSRGD------GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH  398 (498)
Q Consensus       325 ~v~~l~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (498)
                      .|.++.+.|.      +..|++++.|+.|++||++.                                  .+....+.+|
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----------------------------------~~~~~~~~~h  195 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----------------------------------FQIEADFIGH  195 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCC
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc----------------------------------chhheeecCC
Confidence            9999999985      45899999999999999987                                  2455566666


Q ss_pred             ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          399 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       399 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      .....      +.+|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ .+++|++..
T Consensus       196 ~~~v~------~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~  267 (319)
T 3frx_A          196 NSNIN------TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDP  267 (319)
T ss_dssp             CSCEE------EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred             CCcEE------EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence            64322      236778999999999999999999999999998875 4689999999999999988765 599999875


Q ss_pred             C
Q 010883          479 N  479 (498)
Q Consensus       479 ~  479 (498)
                      .
T Consensus       268 ~  268 (319)
T 3frx_A          268 Q  268 (319)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-36  Score=290.69  Aligned_cols=252  Identities=23%  Similarity=0.348  Sum_probs=209.8

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      +...|.+++|+|||++||+|+.|+.|+|||+.+++.+.   ...+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence            34469999999999999999999999999999885544   346788899999999999999999999999999999887


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEE-------eccCCCeeE
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI-------LAHTSDVNT  281 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~  281 (498)
                      ......                 +...+.+++|+| ++++|++|+.|+.|++||+.+++.+..+       .+|...|.+
T Consensus       199 ~~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          199 CSLTLS-----------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             EEEEEE-----------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             eEEEEE-----------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            644332                 223699999999 8999999999999999999999887766       578999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccC--------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      ++|+ +++++|++|+.||.|++||++....        .......+.+|...|.+++|+|++.+|++++.|+.|++||++
T Consensus       262 v~~~-~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          262 VVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             EEEC-TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             EEEC-CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            9998 7899999999999999999973211        134456778899999999999999999999999999999998


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd  433 (498)
                      +                                  +..+..+.+|..............++|++++|++|+.||.|+||+
T Consensus       341 ~----------------------------------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          341 S----------------------------------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             T----------------------------------CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             C----------------------------------CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence            7                                  356677788875443333332335778999999999999999999


Q ss_pred             CCC
Q 010883          434 LVS  436 (498)
Q Consensus       434 ~~~  436 (498)
                      +..
T Consensus       387 ~~~  389 (393)
T 1erj_A          387 YKK  389 (393)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.7e-36  Score=279.86  Aligned_cols=251  Identities=22%  Similarity=0.343  Sum_probs=214.3

Q ss_pred             eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883          170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL  249 (498)
Q Consensus       170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l  249 (498)
                      ....+|...|++++|+|++++|++++.|+.|++|++.+++......                +|...|.+++|+|++++|
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l   80 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------------GHKLGISDVAWSSDSNLL   80 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEECTTSSEE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc----------------cCCCceEEEEEcCCCCEE
Confidence            3456788899999999999999999999999999998876544322                466789999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      ++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|++|+.||.|++||++    .++.+..+..|..+|.++
T Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A           81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCEEEEEecCCCCcEEEE
Confidence            999999999999999999999999999999999998 788999999999999999998    778888999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      +|+|++++|++++.|+.|++||+++.                                  +.+..+..+.. ..+    .
T Consensus       156 ~~~~~~~~l~~~~~d~~i~~wd~~~~----------------------------------~~~~~~~~~~~-~~~----~  196 (312)
T 4ery_A          156 HFNRDGSLIVSSSYDGLCRIWDTASG----------------------------------QCLKTLIDDDN-PPV----S  196 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTC----------------------------------CEEEEECCSSC-CCE----E
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCC----------------------------------ceeeEEeccCC-Cce----E
Confidence            99999999999999999999999873                                  22333322111 111    1


Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeee--EEc-CCCCeEEEEeCCCcEEEecCCCCC
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC--SWH-PSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~s-p~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ..+|+|++++|++++.||.|++||+.+++.+..+.+|...+..+  .++ +++.+|++++.||.|++||+....
T Consensus       197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence            23677899999999999999999999999999999887664433  343 678899999999999999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.2e-38  Score=290.93  Aligned_cols=259  Identities=20%  Similarity=0.174  Sum_probs=198.7

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV  203 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iw  203 (498)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ......+|...|.+++|+|  ++++|++++.|++|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            46789999999999999999999999999999999877432 1234467888999999986  48999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCee---eEEEeccCCC
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKL---SLRILAHTSD  278 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~  278 (498)
                      |+.++........              .+|...|.+++|+|+  +.+|++|+.|+.|++||+..+..   ...+.+|...
T Consensus        87 d~~~~~~~~~~~~--------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~  152 (316)
T 3bg1_A           87 REENGTWEKSHEH--------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG  152 (316)
T ss_dssp             CCSSSCCCEEEEE--------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred             ECCCCcceEEEEc--------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence            9987643222111              247778999999997  78999999999999999987632   2344579999


Q ss_pred             eeEEEEeCCC----------------CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC----CEE
Q 010883          279 VNTVCFGDES----------------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYL  338 (498)
Q Consensus       279 v~~~~~~~~~----------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----~~l  338 (498)
                      |.+++|+|..                +.+|++|+.|+.|++||++... ....+..+.+|...|.+++|+|++    .+|
T Consensus       153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l  231 (316)
T 3bg1_A          153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI  231 (316)
T ss_dssp             BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred             cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCceE
Confidence            9999998431                4689999999999999986110 114667788999999999999986    788


Q ss_pred             EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc
Q 010883          339 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK  418 (498)
Q Consensus       339 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  418 (498)
                      ++++.|++|++||++....                                                           +.
T Consensus       232 as~s~D~~v~iw~~~~~~~-----------------------------------------------------------~~  252 (316)
T 3bg1_A          232 ASCSQDGRVFIWTCDDASS-----------------------------------------------------------NT  252 (316)
T ss_dssp             EEEETTCEEEEEECSSTTC-----------------------------------------------------------CC
T ss_pred             EEEcCCCeEEEEEccCccc-----------------------------------------------------------cc
Confidence            8888899999998765110                                                           00


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       419 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                                         .....+..|...|.+++|+|++++|++++.||.|++|+...
T Consensus       253 -------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          253 -------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             -------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             -------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence                               00011234677888899999988899999999999998753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1e-35  Score=291.25  Aligned_cols=283  Identities=20%  Similarity=0.360  Sum_probs=241.1

Q ss_pred             CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..   ..+|...|.+++|+  +++|++++.|+.|++
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v  183 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIISGSTDRTLKV  183 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence            44678899988643 3555799999999999999999999865543   45788899999997  679999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      ||+.+++......                +|...|.++.|+  ++.+++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus       184 wd~~~~~~~~~~~----------------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  245 (445)
T 2ovr_B          184 WNAETGECIHTLY----------------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  245 (445)
T ss_dssp             EETTTTEEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             EECCcCcEEEEEC----------------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence            9999887654332                466789999996  5689999999999999999999999999999999999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      +|   ++.++++|+.||.|++||++    .+..+..+.+|...|.++.|  ++.++++++.|+.|++||+++        
T Consensus       246 ~~---~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~--------  308 (445)
T 2ovr_B          246 QY---DGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--------  308 (445)
T ss_dssp             EE---CSSCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------
T ss_pred             EE---CCCEEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------
Confidence            99   46789999999999999998    77888999999999999999  788999999999999999987        


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA  442 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  442 (498)
                                                ++.+..+.+|.......        ++++++|++|+.||.|++||+.+++.+..
T Consensus       309 --------------------------~~~~~~~~~~~~~v~~~--------~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  354 (445)
T 2ovr_B          309 --------------------------GNCIHTLTGHQSLTSGM--------ELKDNILVSGNADSTVKIWDIKTGQCLQT  354 (445)
T ss_dssp             --------------------------CCEEEEECCCCSCEEEE--------EEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             --------------------------CCEEEEEcCCcccEEEE--------EEeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence                                      35566666665433221        22578999999999999999999999999


Q ss_pred             ecc---CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          443 LKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       443 ~~~---h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      +..   |...|++++|+  +++|++++.||.|++||+.++...
T Consensus       355 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          355 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI  395 (445)
T ss_dssp             ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence            986   88999999995  579999999999999999877543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.9e-36  Score=283.18  Aligned_cols=248  Identities=21%  Similarity=0.297  Sum_probs=212.7

Q ss_pred             cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883          172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  251 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~  251 (498)
                      ..+|...|++++|+|++++|++++.|++|++||..+++......                .|...|.+++|+|+|.+|++
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~----------------~~~~~v~~~~~sp~g~~las  123 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT----------------MPCTWVMACAYAPSGCAIAC  123 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CSSSCCCEEEECTTSSEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe----------------cCCCCEEEEEECCCCCEEEE
Confidence            35788899999999999999999999999999998876544332                23447999999999999999


Q ss_pred             EeCCCeEEEEECCCC------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc
Q 010883          252 GSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG  325 (498)
Q Consensus       252 g~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  325 (498)
                      |+.|+.+++|++...      .....+..|...|.+++|+ +++..|++++.|++|++||++    .++.+..+.+|...
T Consensus       124 g~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~----~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVE----SGQLLQSFHGHGAD  198 (354)
T ss_dssp             ESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSC
T ss_pred             eeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCC----CCeEEEEEcCCCCC
Confidence            999999999998653      2445677899999999997 778899999999999999998    78889999999999


Q ss_pred             EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          326 ITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       326 v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      |.+++++|  ++++|++++.|+.|++||+++                                  ++.+..+.+|.....
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~----------------------------------~~~~~~~~~h~~~v~  244 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----------------------------------GQCVQAFETHESDVN  244 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTT----------------------------------CCEEEEECCCSSCEE
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCC----------------------------------CcEEEEecCCCCCeE
Confidence            99999987  578999999999999999987                                  356667777764322


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC--CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                            +.+|+|++.+|++|+.|+.|++||+.+++.+..+..+  ...+.+++|+|++++|++++.|+.|++||+..+.
T Consensus       245 ------~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          245 ------SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             ------EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             ------EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence                  2356779999999999999999999998887777543  3578999999999999999999999999997654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-37  Score=296.93  Aligned_cols=251  Identities=19%  Similarity=0.328  Sum_probs=212.2

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|.+.|++++|+|++++|++|+.|++|+|||+.+++......                +|...|.+++|+|+|++|+
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~----------------~h~~~v~~~~~s~~g~~la  124 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK----------------LHCPWVMECAFAPNGQSVA  124 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE----------------CCCTTCCCCEECTTSSEEE
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe----------------cCCCCEEEEEECCCCCEEE
Confidence            346888999999999999999999999999999998887654332                3556899999999999999


Q ss_pred             EEeCCCeEEEEECCCCe-------eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe----
Q 010883          251 AGSSDDCIYVYDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----  319 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----  319 (498)
                      +|+.|+.|++||+.+..       ....+.+|.+.|.++.|.|.++..|++|+.|++|++||++    .+..+..+    
T Consensus       125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~~~  200 (380)
T 3iz6_a          125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT----TGQRISIFGSEF  200 (380)
T ss_dssp             ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT----TCCEEEEECCCS
T ss_pred             EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC----CCcEEEEeeccc
Confidence            99999999999997532       2345678999999999997677889999999999999998    66776666    


Q ss_pred             -ccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883          320 -MGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG  397 (498)
Q Consensus       320 -~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (498)
                       .+|...|.+++|++ ++.+|++|+.|+.|++||++...                                 ..+..+.+
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---------------------------------~~~~~~~~  247 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---------------------------------RAVRTYHG  247 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---------------------------------CCCEEECC
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---------------------------------cceEEECC
Confidence             67899999999987 88999999999999999997521                                 44556666


Q ss_pred             CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC-------CCeeeeEEcCCCCeEEEEeCCCc
Q 010883          398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGD  470 (498)
Q Consensus       398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~l~s~~~Dg~  470 (498)
                      |.....      +.+|+|++++|++|+.||+|++||+.+++.+..+..+.       ..|++++|+|++++|++|+.||.
T Consensus       248 h~~~v~------~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          248 HEGDIN------SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             CSSCCC------EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             cCCCeE------EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence            664322      23677799999999999999999999999988876543       24899999999999999999999


Q ss_pred             EEEecCCCCC
Q 010883          471 VVRWEFPGNG  480 (498)
Q Consensus       471 i~iw~~~~~~  480 (498)
                      |++||+..++
T Consensus       322 i~vwd~~~~~  331 (380)
T 3iz6_a          322 CYVWDTLLAE  331 (380)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            9999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-35  Score=289.81  Aligned_cols=294  Identities=21%  Similarity=0.327  Sum_probs=246.3

Q ss_pred             ccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE
Q 010883          112 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL  191 (498)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  191 (498)
                      ...+++....+....+.+|...|++++|+  +++|++|+.||.|++||+.+++.+..   ..+|...|.+++|+  ++.|
T Consensus       140 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l  212 (445)
T 2ovr_B          140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGHTSTVRCMHLH--EKRV  212 (445)
T ss_dssp             CEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEE--TTEE
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCCCCcEEEEEec--CCEE
Confidence            33444444445556778999999999997  67999999999999999999865543   35777899999994  6789


Q ss_pred             EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883          192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR  271 (498)
Q Consensus       192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~  271 (498)
                      ++++.|+.|++||+.+++......                +|...|.+++|  +++++++|+.||.|++||+.+++.+..
T Consensus       213 ~s~s~dg~i~~wd~~~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~  274 (445)
T 2ovr_B          213 VSGSRDATLRVWDIETGQCLHVLM----------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT  274 (445)
T ss_dssp             EEEETTSEEEEEESSSCCEEEEEE----------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEc----------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence            999999999999999877644332                46668999999  788999999999999999999999999


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  351 (498)
                      +.+|...|.+++|   ++.++++++.||.|++||++    .++.+..+.+|...+.++.++  +++|++++.||.|++||
T Consensus       275 ~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          275 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWD  345 (445)
T ss_dssp             ECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             ecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEE
Confidence            9999999999999   57899999999999999998    788889999999999998884  56999999999999999


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-eeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY  430 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  430 (498)
                      +++.                                  +.+..+..+. ....+..+.    +  ++++|++|+.||.|+
T Consensus       346 ~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~----~--~~~~l~s~~~dg~v~  385 (445)
T 2ovr_B          346 IKTG----------------------------------QCLQTLQGPNKHQSAVTCLQ----F--NKNFVITSSDDGTVK  385 (445)
T ss_dssp             TTTC----------------------------------CEEEEECSTTSCSSCEEEEE----E--CSSEEEEEETTSEEE
T ss_pred             CCCC----------------------------------cEEEEEccCCCCCCCEEEEE----E--CCCEEEEEeCCCeEE
Confidence            9873                                  4555555422 111222222    2  468999999999999


Q ss_pred             EEECCCCcEEEEe-----ccCCCCeeeeEEcCCCCeEEEEeCCCc----EEEecCCCC
Q 010883          431 VYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQPMLVSSSWDGD----VVRWEFPGN  479 (498)
Q Consensus       431 iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~l~s~~~Dg~----i~iw~~~~~  479 (498)
                      +||+.+++.+..+     ..|.+.|++++|+|++.+|++++.||+    |.+||+...
T Consensus       386 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          386 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            9999999998888     478899999999999999999999998    999999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-36  Score=282.14  Aligned_cols=254  Identities=20%  Similarity=0.232  Sum_probs=201.3

Q ss_pred             cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883          172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  251 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~  251 (498)
                      ..+|...|.+++|+|+  +|++++.|+.|++|++..+.........            ..+|...|.+++|+|++++|++
T Consensus        10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~------------~~~h~~~v~~v~~sp~~~~las   75 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD------------ETAHKKAIRSVAWRPHTSLLAA   75 (330)
T ss_dssp             EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC------------TTCCCSCEEEEEECTTSSEEEE
T ss_pred             eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe------------cCCccCCEEEEEECCCCCEEEE
Confidence            4578889999999988  9999999999999999875321111110            1137779999999999999999


Q ss_pred             EeCCCeEEEEECCC-------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883          252 GSSDDCIYVYDLEA-------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE  324 (498)
Q Consensus       252 g~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  324 (498)
                      |+.|+.|++||+..       .+.+..+.+|...|.+++|+ +++++|++|+.|++|++||++........+..+.+|..
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence            99999999999853       34567788999999999998 78999999999999999999532223456778899999


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883          325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL  404 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (498)
                      .|.+++|+|++.+|++++.|+.|++||+....                                ...+..+.+|..... 
T Consensus       155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--------------------------------~~~~~~~~~h~~~v~-  201 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--------------------------------WECVAVLNGHEGTVW-  201 (330)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------EEEEEEECCCSSCEE-
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--------------------------------eeEEEEccCCCCcEE-
Confidence            99999999999999999999999999986521                                145667777764322 


Q ss_pred             EEEEeccccCCC--CcEEEEEecCCeEEEEECCCC--------cEEEEecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883          405 IRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSG--------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVR  473 (498)
Q Consensus       405 ~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~i  473 (498)
                           +.+|+|+  +.+|++|+.|+.|++||+..+        .....+.. |...|.+++|++++ +|++++.||.|++
T Consensus       202 -----~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i  275 (330)
T 2hes_X          202 -----SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAV  275 (330)
T ss_dssp             -----EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEE
T ss_pred             -----EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEE
Confidence                 2345666  779999999999999998765        34555654 89999999999765 8999999999999


Q ss_pred             ecCCCC
Q 010883          474 WEFPGN  479 (498)
Q Consensus       474 w~~~~~  479 (498)
                      |+...+
T Consensus       276 w~~~~~  281 (330)
T 2hes_X          276 YEEVDG  281 (330)
T ss_dssp             EEEETT
T ss_pred             EEcCCC
Confidence            998654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.8e-37  Score=336.33  Aligned_cols=362  Identities=18%  Similarity=0.205  Sum_probs=277.4

Q ss_pred             cccccccCCCCCccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe
Q 010883          113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH  190 (498)
Q Consensus       113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  190 (498)
                      ..+++.........+.+|...|.+++|+|  ++.++++|+.|+.|++||+.++.....   ..+|...|++++|+|++++
T Consensus       681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~h~~~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT---MFGHTNSVNHCRFSPDDEL  757 (1249)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE---ECCCSSCEEEEEECSSTTE
T ss_pred             EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe---ecCCCCCEEEEEEecCCCE
Confidence            34444444455567789999999999999  556999999999999999999865553   3478889999999999999


Q ss_pred             EEEEECCCeEEEEECCCCceecccccccc--------------ccCcccccc-------------------------CCC
Q 010883          191 LVYASMSPIVHIVDVGSGTMESLANVTEI--------------HDGLDFSAA-------------------------DDG  231 (498)
Q Consensus       191 l~~~s~d~~i~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~-------------------------~~~  231 (498)
                      |++++.||.|++||+.+++..........              ...+.+.+.                         ...
T Consensus       758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence            99999999999999988765433321110              001111111                         012


Q ss_pred             CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc-
Q 010883          232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-  310 (498)
Q Consensus       232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-  310 (498)
                      +|...|.+++|+|+++++++++.+|.|++||+.++..+..+.+|...|.+++|+ +++.+|++++.||.|++||+.... 
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~~~~~~~  916 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCK  916 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC-CCCCEEEEEeCCCeEEEEEccccce
Confidence            677899999999999999999999999999999999999999999999999998 788999999999999999854100 


Q ss_pred             --------------------------------------------------------------------------CCCcee
Q 010883          311 --------------------------------------------------------------------------VKGKPA  316 (498)
Q Consensus       311 --------------------------------------------------------------------------~~~~~~  316 (498)
                                                                                                ..+...
T Consensus       917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~  996 (1249)
T 3sfz_A          917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF  996 (1249)
T ss_dssp             CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred             eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence                                                                                      022344


Q ss_pred             EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc
Q 010883          317 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK  396 (498)
Q Consensus       317 ~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (498)
                      ..+.+|...|++++|+|++++|++++.||.|++||+.+......     ......+..+.+.++...+....+..+..+.
T Consensus       997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A          997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL-----QAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp             EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC-----BCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred             eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE-----ecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence            55667889999999999999999999999999999987543321     1222233344444454444444444555444


Q ss_pred             cCcee--EEE---EEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883          397 GHSVL--RTL---IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV  471 (498)
Q Consensus       397 ~~~~~--~~~---~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i  471 (498)
                      .....  ...   .....+.+|+|++++|++++.||.|++||+.+++++..+.+|.+.|++++|+|++++|++++.||.|
T Consensus      1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A         1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp             TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred             CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence            32110  000   0112345688899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCC
Q 010883          472 VRWEFPGNGEAA  483 (498)
Q Consensus       472 ~iw~~~~~~~~~  483 (498)
                      ++||+.++....
T Consensus      1152 ~vwd~~~~~~~~ 1163 (1249)
T 3sfz_A         1152 RIWNVSDGQLLH 1163 (1249)
T ss_dssp             CEEESSSSCCCC
T ss_pred             EEEECCCCceEE
Confidence            999999876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.2e-36  Score=305.63  Aligned_cols=308  Identities=15%  Similarity=0.151  Sum_probs=238.7

Q ss_pred             cccccCCCCCccccCCCC---ceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEE-eecCCCceeEEEEEeCCCCC
Q 010883          115 LSRYLPVNGPWPVDQTTS---RAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQR  189 (498)
Q Consensus       115 ~~~~~~~~~~~~l~~h~~---~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~  189 (498)
                      +++....+....+.+|..   .|.+++|+|+ +++|++++.||.|++||+.+++.+... .....|...|.+++|+ +++
T Consensus       187 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  265 (615)
T 1pgu_A          187 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ  265 (615)
T ss_dssp             EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS
T ss_pred             EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC
Confidence            334333344456778999   9999999999 999999999999999999998665543 1111677899999999 999


Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS  269 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  269 (498)
                      +|++++.|+.|++||+.+++.........            ..+...+.++.|. ++.++++++.+|.|++||+.+++.+
T Consensus       266 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          266 KFATVGADATIRVWDVTTSKCVQKWTLDK------------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL  332 (615)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCT------------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCC------------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence            99999999999999999887655443321            1233468888886 8899999999999999999998888


Q ss_pred             EEEeccCCCeeEEEEeCC--------------------------------CCCEEEEeeCCCeEEEEcCccccC------
Q 010883          270 LRILAHTSDVNTVCFGDE--------------------------------SGHLIYSGSDDNLCKVWDRRCLNV------  311 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~--------------------------------~~~~l~s~s~dg~i~vwd~~~~~~------  311 (498)
                      ..+..|...|.+++| |.                                ++..|++++.|+.|++||+.....      
T Consensus       333 ~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  411 (615)
T 1pgu_A          333 KTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKV  411 (615)
T ss_dssp             EEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEE
T ss_pred             EEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceE
Confidence            887777666666655 21                                244555666666666665432100      


Q ss_pred             ----------------------------------------------------------------CCcee-EEeccccccE
Q 010883          312 ----------------------------------------------------------------KGKPA-GVLMGHLEGI  326 (498)
Q Consensus       312 ----------------------------------------------------------------~~~~~-~~~~~~~~~v  326 (498)
                                                                                      ..... ..+..|...|
T Consensus       412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v  491 (615)
T 1pgu_A          412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP  491 (615)
T ss_dssp             EEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred             EEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence                                                                            11111 4556788999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEE
Q 010883          327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLI  405 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  405 (498)
                      ++++|+|++++|++++.|+.|++||+.+.                                  +.+..+.+ |....   
T Consensus       492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~----------------------------------~~~~~~~~~h~~~v---  534 (615)
T 1pgu_A          492 SYISISPSETYIAAGDVMGKILLYDLQSR----------------------------------EVKTSRWAFRTSKI---  534 (615)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTT----------------------------------EEEECCSCCCSSCE---
T ss_pred             EEEEECCCCCEEEEcCCCCeEEEeeCCCC----------------------------------cceeEeecCCCCce---
Confidence            99999999999999999999999999873                                  34444444 44222   


Q ss_pred             EEEeccccCC----------CCcEEEEEecCCeEEEEECCCC-cEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883          406 RCHFSPVYST----------GQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       406 ~~~~~~~~s~----------~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw  474 (498)
                         .+.+|+|          ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|
T Consensus       535 ---~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw  610 (615)
T 1pgu_A          535 ---NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW  610 (615)
T ss_dssp             ---EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             ---eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEE
Confidence               2336777          8999999999999999999998 78899999999999999999999 9999999999999


Q ss_pred             cCCC
Q 010883          475 EFPG  478 (498)
Q Consensus       475 ~~~~  478 (498)
                      ++..
T Consensus       611 ~~~~  614 (615)
T 1pgu_A          611 NVVL  614 (615)
T ss_dssp             EEC-
T ss_pred             eeec
Confidence            9874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=311.43  Aligned_cols=208  Identities=13%  Similarity=0.137  Sum_probs=161.6

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      .|..+|.+++|+| |++||+++.|++|+|||+.+++.+....    |...|++++|+|++++|++|+.||.|++||+.++
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            4788999999999 8899999999999999999987665542    4458999999999999999999999999999987


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEecc------------
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH------------  275 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~------------  275 (498)
                      +.... .......    ......+|..+|.+++|+|+ +..|++|+.||.| +||+.+++.+..+..|            
T Consensus       131 ~~~~~-~i~~~~~----~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~  204 (902)
T 2oaj_A          131 QLSSF-KLDNLQK----SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE  204 (902)
T ss_dssp             EEEEE-EECCHHH----HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred             ccccc-eeccccc----cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence            65311 1100000    00112468889999999996 5789999999999 9999999988887655            


Q ss_pred             ------CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE--e---c-------------cccccEEEEEE
Q 010883          276 ------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--L---M-------------GHLEGITFIDS  331 (498)
Q Consensus       276 ------~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~---~-------------~~~~~v~~l~~  331 (498)
                            ...|++++|+ +++.+|++|+.||.|++||++    .++++..  +   .             .|...|++++|
T Consensus       205 ~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~----~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w  279 (902)
T 2oaj_A          205 KTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDAN----SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW  279 (902)
T ss_dssp             CTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETT----TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred             ccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECC----CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence                  4779999998 789999999999999999997    5555432  2   1             13457999999


Q ss_pred             c----CCC-CEEEEEeCC-----CcEEEEeC
Q 010883          332 R----GDG-RYLISNGKD-----QAIKLWDI  352 (498)
Q Consensus       332 ~----~~~-~~l~s~~~d-----g~i~iwd~  352 (498)
                      +    |++ .+|++|+.|     ..+.+|++
T Consensus       280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          280 MCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            5    443 456666555     26777774

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.1e-35  Score=289.42  Aligned_cols=309  Identities=17%  Similarity=0.266  Sum_probs=240.6

Q ss_pred             cccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC--CCC
Q 010883          111 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQ  188 (498)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~  188 (498)
                      ....+++....+....+.+|.+.|++++|+|++ +|++|+.||+|++||+.++..+..   ..+|...|.+++|+  +++
T Consensus       142 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~  217 (464)
T 3v7d_B          142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVEYKNI  217 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEEESSSC
T ss_pred             CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCCccEEEEEecCCCC
Confidence            344445544555556778999999999999998 999999999999999999865543   35678899999998  578


Q ss_pred             CeEEEEECCCeEEEEECCCCceecccccccccc-------CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883          189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHD-------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  261 (498)
Q Consensus       189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw  261 (498)
                      ++|++++.|+.|++||+.++.............       ...+......+|...|.++  ++++++|++|+.||.|++|
T Consensus       218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vw  295 (464)
T 3v7d_B          218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVW  295 (464)
T ss_dssp             EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEE
T ss_pred             CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEE
Confidence            999999999999999998776432221110000       0000111223577788877  5678899999999999999


Q ss_pred             ECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE
Q 010883          262 DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       262 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  341 (498)
                      |+.+++.+..+.+|...|.+++|+ +++++|++|+.||.|++||++    .++.+..+.+|...|.++.|+  +.+|+++
T Consensus       296 d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          296 DVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred             ECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence            999999999999999999999998 788999999999999999998    788999999999999999997  5799999


Q ss_pred             eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883          342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  421 (498)
                      +.||.|++||+++..                                  ...... +......      .++++++++|+
T Consensus       369 s~dg~v~vwd~~~~~----------------------------------~~~~~~-~~~~~~~------~~~~~~~~~l~  407 (464)
T 3v7d_B          369 AADGSIRGWDANDYS----------------------------------RKFSYH-HTNLSAI------TTFYVSDNILV  407 (464)
T ss_dssp             ETTSEEEEEETTTCC----------------------------------EEEEEE-CTTCCCE------EEEEECSSEEE
T ss_pred             eCCCcEEEEECCCCc----------------------------------eeeeec-CCCCccE------EEEEeCCCEEE
Confidence            999999999998732                                  122221 1111111      14566899999


Q ss_pred             EEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          422 TGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       422 ~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      +|+ ||.|++||+.+++.+.. +..|...|++++|+ ...++++++.||.+.+|-
T Consensus       408 ~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          408 SGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             Eec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            998 89999999999999986 56889999999997 344666667777666553

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.8e-35  Score=274.55  Aligned_cols=254  Identities=19%  Similarity=0.210  Sum_probs=203.5

Q ss_pred             eecCCCceeEEEEEe-----CC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEc
Q 010883          170 ILAKSLRWTVTDTSL-----SP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS  243 (498)
Q Consensus       170 ~~~~~~~~~v~~~~~-----sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  243 (498)
                      ....+|...|++++|     ++ ++++|++|+.|++|++||+.+.+.......         ......+|...|.+++|+
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~---------~~~~l~~h~~~V~~~~~~   85 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGI---------PHKALTGHNHFVSDLALS   85 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEE---------EEEEECCCSSCEEEEEEC
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccccc---------ccchhccCCCceEEEEEC
Confidence            345688899999999     77 999999999999999999876542111100         001123688899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe---c
Q 010883          244 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---M  320 (498)
Q Consensus       244 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~  320 (498)
                      |++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|++++.|+.|++||+.    . ......   .
T Consensus        86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~----~-~~~~~~~~~~  159 (343)
T 2xzm_R           86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNIL----G-ECKFSSAEKE  159 (343)
T ss_dssp             SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESS----S-CEEEECCTTT
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEecc----C-Cceeeeeccc
Confidence            999999999999999999999999999999999999999998 789999999999999999985    2 222222   3


Q ss_pred             cccccEEEEEEcCCC----------CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883          321 GHLEGITFIDSRGDG----------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ  390 (498)
Q Consensus       321 ~~~~~v~~l~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (498)
                      .|...|.+++|+|++          .+|++++.|+.|++||...                                   +
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------------------------------~  204 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----------------------------------Q  204 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----------------------------------E
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----------------------------------c
Confidence            688899999999987          7999999999999999543                                   4


Q ss_pred             eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC-CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                      ....+.+|....      .+.+|+|+|++|++|+.||.|++||+.. ......+. +...|.+++|+|++++|+++ .|+
T Consensus       205 ~~~~~~~h~~~v------~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~  276 (343)
T 2xzm_R          205 IRYTFKAHESNV------NHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQ  276 (343)
T ss_dssp             EEEEEECCSSCE------EEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESS
T ss_pred             eeEEEcCccccc------eEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCC
Confidence            455666666332      2336778999999999999999999944 44444443 55679999999999877655 588


Q ss_pred             cEEEecCCCCCC
Q 010883          470 DVVRWEFPGNGE  481 (498)
Q Consensus       470 ~i~iw~~~~~~~  481 (498)
                      .|++|++.....
T Consensus       277 ~v~iw~~~~~~~  288 (343)
T 2xzm_R          277 GVKIFNLMTQSK  288 (343)
T ss_dssp             CEEEEESSSCCS
T ss_pred             CEEEEEeCCCCC
Confidence            899999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-35  Score=312.94  Aligned_cols=220  Identities=17%  Similarity=0.267  Sum_probs=188.8

Q ss_pred             ccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE
Q 010883          116 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS  195 (498)
Q Consensus       116 ~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s  195 (498)
                      ++.-.......+.+|..+|.+++|+|+|++||+|+.||.|+|||+.++..+...   ..|...|++++|+|++++|++++
T Consensus        40 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~  116 (814)
T 3mkq_A           40 WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGS  116 (814)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEE
T ss_pred             EECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCEEEEEEeCCCCEEEEEc
Confidence            333333344567889999999999999999999999999999999998665543   46777999999999999999999


Q ss_pred             CCCeEEEEECCCCc-eeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883          196 MSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL  273 (498)
Q Consensus       196 ~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~  273 (498)
                      .|+.|++||+.++. ......                +|...|.+++|+| ++..|++++.||.|++||+.+++....+.
T Consensus       117 ~dg~i~vw~~~~~~~~~~~~~----------------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  180 (814)
T 3mkq_A          117 DDLTVKLWNWENNWALEQTFE----------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT  180 (814)
T ss_dssp             TTSEEEEEEGGGTSEEEEEEE----------------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred             CCCEEEEEECCCCceEEEEEc----------------CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence            99999999998762 222211                4666899999999 88999999999999999999888877776


Q ss_pred             ccC-CCeeEEEEeC-CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883          274 AHT-SDVNTVCFGD-ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       274 ~~~-~~v~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  351 (498)
                      .+. ..+.+++|+| +++.+|++++.||.|++||++    .+..+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus       181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd  256 (814)
T 3mkq_A          181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN  256 (814)
T ss_dssp             CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            555 8999999984 288999999999999999998    7788889999999999999999999999999999999999


Q ss_pred             CCCCCCc
Q 010883          352 IRKMSSN  358 (498)
Q Consensus       352 ~~~~~~~  358 (498)
                      +.+....
T Consensus       257 ~~~~~~~  263 (814)
T 3mkq_A          257 SSTYKVE  263 (814)
T ss_dssp             TTTCSEE
T ss_pred             CCCCcEE
Confidence            9875543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-36  Score=291.67  Aligned_cols=281  Identities=14%  Similarity=0.190  Sum_probs=223.7

Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCC---Cceecc
Q 010883          138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS---GTMESL  213 (498)
Q Consensus       138 ~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~---~~~~~~  213 (498)
                      .|+|+++.+++++      .|+.. +..+..  ...+|...|++++|+| ++++|++|+.|+.|+|||+.+   +.....
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g~~~~~--~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  104 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-GKLIAT--LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS  104 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-CCEEEE--ECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred             hcCCccccccccc------ccccc-ceEEee--eccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence            3788888888765      38754 434433  2367888999999999 999999999999999999876   321110


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeeeEEEec------------cCCC
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRILA------------HTSD  278 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~---~~~~~~~~~~------------~~~~  278 (498)
                      . ..             .+|...|.+++|+|++++|++|+.||.|++||+.   +++....+..            +...
T Consensus       105 ~-~~-------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  170 (437)
T 3gre_A          105 S-LT-------------YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY  170 (437)
T ss_dssp             S-EE-------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred             e-ee-------------ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccC
Confidence            0 00             0356689999999999999999999999999995   4544433322            4456


Q ss_pred             eeEEEEe-CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          279 VNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       279 v~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      +.++.+. .+++.+|++|+.||.|++||++    ..+.+..+..  |...|++++|+|++++|++++.||.|++||++. 
T Consensus       171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-  245 (437)
T 3gre_A          171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-  245 (437)
T ss_dssp             EEEEEEEECSSCEEEEEEETTSEEEEEETT----TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-
Confidence            6666632 2678899999999999999998    7888888887  899999999999999999999999999999987 


Q ss_pred             CCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883          356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL  434 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~  434 (498)
                                                       +..+..+. .+.  ..+..+.+++.|++++.+|++|+.||.|++||+
T Consensus       246 ---------------------------------~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          246 ---------------------------------NVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             ---------------------------------TEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             ---------------------------------ccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence                                             34555554 343  356677788999999999999999999999999


Q ss_pred             CCCcEEEEeccC--------------------------CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          435 VSGEQVAALKYH--------------------------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       435 ~~~~~~~~~~~h--------------------------~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .+++.+..+.+|                          ...|++++|+ ++++|++++.||.|++||+..+...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS  363 (437)
T ss_dssp             TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred             CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence            999988877654                          4457778888 6789999999999999999877543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=276.44  Aligned_cols=264  Identities=17%  Similarity=0.151  Sum_probs=210.1

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH  201 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i~  201 (498)
                      ...+.+|...|++++|+|++++||+|+.||.|+||++..+.. ........|...|++++|+|+  +++|++++.|+.|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            456789999999999999999999999999999999985422 223345678889999999987  99999999999999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCC
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTS  277 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~  277 (498)
                      +||+.+++........              +|...|.+++|+|+  +.+|++++.|+.|++||+.++.  ....+..|..
T Consensus        83 iwd~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHA--------------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             EEEEETTEEEEEEEEC--------------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             EEEcCCCceeEeeeec--------------CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            9999987632222211              35668999999999  9999999999999999998873  3455678999


Q ss_pred             CeeEEEEeCC------------CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC---CCEEEEEe
Q 010883          278 DVNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNG  342 (498)
Q Consensus       278 ~v~~~~~~~~------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~~  342 (498)
                      .|.+++|+|.            ++.+|++++.||.|++||++...........+.+|...|.+++|+|+   +.+|++++
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            9999999853            68999999999999999997433233456778889999999999999   89999999


Q ss_pred             CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      .||.|++||++......                               ....+........+    .+++|+|++++|++
T Consensus       229 ~dg~i~iwd~~~~~~~~-------------------------------~~~~~~~~~~~~~v----~~~~~s~~g~~l~~  273 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQGPW-------------------------------KKTLLKEEKFPDVL----WRASWSLSGNVLAL  273 (379)
T ss_dssp             TTSCEEEEEESSTTSCC-------------------------------EEEESSSSCCSSCE----EEEEECSSSCCEEE
T ss_pred             CCCEEEEEeCCCCCccc-------------------------------eeeeeccccCCCcE----EEEEEcCCCCEEEE
Confidence            99999999998743211                               11111111111122    33467779999999


Q ss_pred             EecCCeEEEEECCCC
Q 010883          423 GSHDSCVYVYDLVSG  437 (498)
Q Consensus       423 g~~dg~i~iwd~~~~  437 (498)
                      ++.||.|++||+..+
T Consensus       274 ~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          274 SGGDNKVTLWKENLE  288 (379)
T ss_dssp             EESSSSEEEEEEEET
T ss_pred             ecCCCcEEEEeCCCC
Confidence            999999999998754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=281.46  Aligned_cols=311  Identities=15%  Similarity=0.104  Sum_probs=224.6

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEeec-----------------------------------
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILA-----------------------------------  172 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~---~~~~~~~~-----------------------------------  172 (498)
                      ..++.+++|+|||++|+++ .++.|++||+.+++   .+......                                   
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977766 57799999999887   33322110                                   


Q ss_pred             ----------------CCCceeEEEEEeCCCCCeE-EEEECCCeEEEEECC--CCceeccccccccccCccccccCCCCc
Q 010883          173 ----------------KSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGY  233 (498)
Q Consensus       173 ----------------~~~~~~v~~~~~sp~~~~l-~~~s~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h  233 (498)
                                      ..|...|.+++|+|++++| ++++.|+.|++||+.  +++........              .|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~  148 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------CF  148 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------EC
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------------cC
Confidence                            1233469999999999996 888899999999998  66654443211              23


Q ss_pred             eecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----EEeccCCCeeEEEEeCCC---CCEEEEeeCCCeEEEEcC
Q 010883          234 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDR  306 (498)
Q Consensus       234 ~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~vwd~  306 (498)
                      ...|.+++|+|++++|++|+.+|.|++|++.+++...    .+.+|...|.+++|+ ++   +.+|++|+.|+.|++||+
T Consensus       149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEE
T ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEEC
Confidence            4479999999999999999999999999998877544    677899999999998 66   889999999999999999


Q ss_pred             ccccCCCceeEE-eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883          307 RCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK  385 (498)
Q Consensus       307 ~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (498)
                      +    .+..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++............     ...+......    
T Consensus       228 ~----~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~----  293 (450)
T 2vdu_B          228 P----QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL-----IKPYLNDQHL----  293 (450)
T ss_dssp             S----CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHH-----HGGGCCTTSB----
T ss_pred             C----CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh-----hhhhhhhccc----
Confidence            7    6666666 56899999999999 999999999999999999988543222111000     0000000000    


Q ss_pred             CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEEC--CCC---cEEEEeccCCCCeeeeEEcCCC
Q 010883          386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDL--VSG---EQVAALKYHTSPVRDCSWHPSQ  459 (498)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~l~~sp~~  459 (498)
                       + ......-........+    ..+.++|++++|++++ .++.|++|++  .++   +.+..+..| +.|.+++|+|++
T Consensus       294 -~-~~~~~~~~~~~~~~~v----~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~  366 (450)
T 2vdu_B          294 -A-PPRFQNENNDIIEFAV----SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE  366 (450)
T ss_dssp             -C-----------CBCCCE----EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred             -c-cccccccccccceEEE----EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence             0 0000000000000112    2235667999999999 8999999999  565   677778877 889999999964


Q ss_pred             CeEEEEeC-------CCcEEEecCCCC
Q 010883          460 PMLVSSSW-------DGDVVRWEFPGN  479 (498)
Q Consensus       460 ~~l~s~~~-------Dg~i~iw~~~~~  479 (498)
                       ++++++.       +..|.+|.+...
T Consensus       367 -~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          367 -FQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             -EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             -EEEEEecccCCCCCCcceEEEEEEcC
Confidence             4554432       556899987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-35  Score=286.11  Aligned_cols=294  Identities=14%  Similarity=0.213  Sum_probs=229.2

Q ss_pred             ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCc
Q 010883          133 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       133 ~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ....++++|+...++ +++.||.|+||++...... .......+|...|++++|+| ++++|++++.|+.|++|++.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            445688999875444 5788999999999765332 12233567889999999999 99999999999999999998874


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE--eccCCCeeEEEEeC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGD  286 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~  286 (498)
                      ........         .....+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+  ..|...|.+++|+ 
T Consensus       116 ~~~~~~~~---------~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-  185 (402)
T 2aq5_A          116 LVLPLREP---------VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-  185 (402)
T ss_dssp             CSSCBCSC---------SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC-
T ss_pred             CccccCCc---------eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC-
Confidence            32111000         00112577799999999998 69999999999999999999999888  7899999999998 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-cccccc-EEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCCCcccc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEG-ITFIDSRGDGRYLISN---GKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~  361 (498)
                      +++.+|++++.||.|++||++    .+..+..+ ..|... +.++.|+|++++|+++   +.|+.|++||+++.....  
T Consensus       186 ~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~--  259 (402)
T 2aq5_A          186 RDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL--  259 (402)
T ss_dssp             TTSSCEEEEETTSEEEEEETT----TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS--
T ss_pred             CCCCEEEEEecCCcEEEEeCC----CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc--
Confidence            689999999999999999998    77788887 678776 8999999999999999   789999999998743211  


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE-EecCCeEEEEECCCCcE-
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVSGEQ-  439 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~~~~-  439 (498)
                                                   ....+....   .+    ..++|+|++++|++ |+.||.|++||+.+++. 
T Consensus       260 -----------------------------~~~~~~~~~---~v----~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~  303 (402)
T 2aq5_A          260 -----------------------------SLQELDTSS---GV----LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF  303 (402)
T ss_dssp             -----------------------------EEEECCCCS---SC----EEEEEETTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred             -----------------------------eEEeccCCC---ce----eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence                                         011111111   11    22366779998875 55799999999999873 


Q ss_pred             EEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          440 VAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       440 ~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +..+..  |..+|.+++|+|++.++++  .|+.+++|++..+.
T Consensus       304 ~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          304 LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             eEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            444443  5689999999999998875  56799999997653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-36  Score=296.99  Aligned_cols=270  Identities=12%  Similarity=0.035  Sum_probs=199.8

Q ss_pred             CCCCceEEEEEcCCC---------CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          129 QTTSRAYVSQFSADG---------SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg---------~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      .+.+.|++++|+|++         ++||+|+.++..                          -..+|+++.+++++.|++
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~~laS~s~D~t  184 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLEMFDKEKHSSC  184 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CEE
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------CccchhhhhhccCCCCce
Confidence            368999999999997         799999876420                          012689999999999999


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCee-----
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD------GRELVAGSSDDCIYVYDLEANKL-----  268 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~------g~~l~~g~~dg~i~vwd~~~~~~-----  268 (498)
                      |+||++.+++........            ..+|.+.|.+++|+|+      +.+||+++.||+|++||+..++.     
T Consensus       185 I~iWd~~~~~~~~~~~~~------------l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          185 IQIFKMNTSTLHCVKVQT------------IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF  252 (524)
T ss_dssp             EEEEEEETTTCCEEEEEE------------EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred             EEEEEccCCCCCceEEEE------------EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence            999999876532110000            0124558999999996      57999999999999999987642     


Q ss_pred             ------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE--EEcCCC-CEEE
Q 010883          269 ------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI--DSRGDG-RYLI  339 (498)
Q Consensus       269 ------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~-~~l~  339 (498)
                            ...+.+|...|++++|++ + ..|++|+.||+|++||++..   ..+...+.+|...|+++  .|+|++ .+|+
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred             eeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence                  236778999999999984 3 48999999999999999721   23456688999999999  578887 8999


Q ss_pred             EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883          340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY  419 (498)
Q Consensus       340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  419 (498)
                      +++.|++|+|||+++..                                  .+..+.+|.....    ..+.+|+|+++.
T Consensus       328 S~S~D~tvklWD~~~~~----------------------------------~~~~~~~~~~~~~----v~~v~fsp~~~~  369 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIA----------------------------------TTKTTVSRFRGSN----LVPVVYCPQIYS  369 (524)
T ss_dssp             EEETTSEEEEECGGGHH----------------------------------HHCEEEEECSCCS----CCCEEEETTTTE
T ss_pred             EeccCCeEEEEECCCCC----------------------------------cccccccccccCc----ccceEeCCCcCe
Confidence            99999999999998732                                  2222222221001    133467789999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       420 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      +++++.|++|++||+.++.++..+.+|.+.|++++|+|++++|++|+.||+|++|++...
T Consensus       370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            999999999999999999988888899999999999999999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.5e-34  Score=281.19  Aligned_cols=262  Identities=21%  Similarity=0.298  Sum_probs=206.9

Q ss_pred             cCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EE
Q 010883          172 AKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-EL  249 (498)
Q Consensus       172 ~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l  249 (498)
                      ...|.+.|++++|+|+ +.+|++++.+|.|++|++.+........      +.........+|...|.+++|+|++. +|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  197 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS------GECQPDLRLRGHQKEGYGLSWNPNLNGYL  197 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT------CCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc------ccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence            3457779999999997 6899999999999999997531110000      00000001125777899999999988 99


Q ss_pred             EEEeCCCeEEEEECCCCee-------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc
Q 010883          250 VAGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH  322 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  322 (498)
                      ++|+.||.|++||+..+..       ...+..|...|.+++|+|.++.+|++++.||.|++||++... ....+..+..|
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~  276 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAH  276 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECC
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecC
Confidence            9999999999999987422       355668999999999996688999999999999999998321 12567777889


Q ss_pred             cccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883          323 LEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL  401 (498)
Q Consensus       323 ~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (498)
                      ...|++++|+|++. +|++|+.||.|++||++...                                 ..+..+..|...
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------~~~~~~~~h~~~  323 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------LKLHSFESHKDE  323 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEECCSSC
T ss_pred             CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------CCeEEeecCCCC
Confidence            99999999999987 68899999999999998732                                 344555555432


Q ss_pred             EEEEEEEeccccCCCC-cEEEEEecCCeEEEEECCC--------------CcEEEEeccCCCCeeeeEEcCCCC-eEEEE
Q 010883          402 RTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVS--------------GEQVAALKYHTSPVRDCSWHPSQP-MLVSS  465 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~  465 (498)
                        +..    +.|+|++ .+|++++.||.|+|||+..              .+.+..+.+|...|++++|+|+++ +|+++
T Consensus       324 --v~~----i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~  397 (430)
T 2xyi_A          324 --IFQ----VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV  397 (430)
T ss_dssp             --EEE----EEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred             --EEE----EEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence              222    3566677 5799999999999999987              367888889999999999999999 89999


Q ss_pred             eCCCcEEEecCCCC
Q 010883          466 SWDGDVVRWEFPGN  479 (498)
Q Consensus       466 ~~Dg~i~iw~~~~~  479 (498)
                      +.||.|++|++...
T Consensus       398 s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          398 SEDNIMQVWQMAEN  411 (430)
T ss_dssp             ETTSEEEEEEECHH
T ss_pred             ECCCCEEEeEcccc
Confidence            99999999998754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-34  Score=273.49  Aligned_cols=255  Identities=18%  Similarity=0.252  Sum_probs=208.3

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRE  248 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~  248 (498)
                      ...+|...|++++|+|++++|++++.|+.|+||++..+........              .+|...|.+++|+++  +++
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~~~   71 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL--------------TGHEGPVWRVDWAHPKFGTI   71 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe--------------cCCCCcEEEEEeCCCCCCCE
Confidence            3457888999999999999999999999999999975433222211              147779999999987  999


Q ss_pred             EEEEeCCCeEEEEECCCCe--eeEEEeccCCCeeEEEEeCCC--CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883          249 LVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE  324 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  324 (498)
                      |++++.||.|++||+.+++  .+..+..|...|.+++|+ ++  +.+|++++.||.|++||++..  .......+..|..
T Consensus        72 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~  148 (379)
T 3jrp_A           72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAI  148 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTT--SCCCEEEEECCTT
T ss_pred             EEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCC--CceeeEEecCCCC
Confidence            9999999999999999987  667777899999999998 66  899999999999999999733  1234456778999


Q ss_pred             cEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCce
Q 010883          325 GITFIDSRG-------------DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS  391 (498)
Q Consensus       325 ~v~~l~~~~-------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (498)
                      .|.+++|+|             ++.+|++++.|+.|++||++.....                              ...
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------~~~  198 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVL  198 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE------------------------------EEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc------------------------------eee
Confidence            999999999             6999999999999999999863321                              123


Q ss_pred             EEEEccCceeEEEEEEEeccccCCC---CcEEEEEecCCeEEEEECCCCc---EEEEe--ccCCCCeeeeEEcCCCCeEE
Q 010883          392 VATYKGHSVLRTLIRCHFSPVYSTG---QKYIYTGSHDSCVYVYDLVSGE---QVAAL--KYHTSPVRDCSWHPSQPMLV  463 (498)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~g~~dg~i~iwd~~~~~---~~~~~--~~h~~~v~~l~~sp~~~~l~  463 (498)
                      +..+.+|....      .+++|+|+   +++|++++.||.|++||+.++.   ....+  ..|...|++++|+|++++|+
T Consensus       199 ~~~~~~h~~~v------~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  272 (379)
T 3jrp_A          199 ESTLEGHSDWV------RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  272 (379)
T ss_dssp             EEEECCCSSCE------EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             EEEEecccCcE------eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence            44556665322      23366778   8999999999999999998864   22333  34889999999999999999


Q ss_pred             EEeCCCcEEEecCCC
Q 010883          464 SSSWDGDVVRWEFPG  478 (498)
Q Consensus       464 s~~~Dg~i~iw~~~~  478 (498)
                      +++.||.|++|++..
T Consensus       273 ~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          273 LSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEESSSSEEEEEEEE
T ss_pred             EecCCCcEEEEeCCC
Confidence            999999999999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=9.2e-34  Score=268.24  Aligned_cols=288  Identities=14%  Similarity=0.126  Sum_probs=211.6

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE-EEECCCeEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIV  203 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iw  203 (498)
                      ..+..|...|++++|+|||++||+|+.++ ++||++.++.......   .+  .+..+++.++++.++ +++.|+.|++|
T Consensus        13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE---MR--HLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE---CS--CCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee---cC--CeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            34578999999999999999999998775 7899998764443321   11  477788999888874 56778999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV  282 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~  282 (498)
                      |+.+++......                 +...|.+++|+++.  ++++ .++.|++||+.++ +.+..+..   +...+
T Consensus        87 d~~~~~~~~~~~-----------------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~  143 (355)
T 3vu4_A           87 DDVKKQDVSRIK-----------------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVC  143 (355)
T ss_dssp             ETTTTEEEEEEE-----------------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred             ECCCCcEEEEEE-----------------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceE
Confidence            999987755433                 22379999999764  4444 4789999999988 66555544   44456


Q ss_pred             EEeCCCCCEEEE--eeCCCeEEEEcCccccC-----------CCce-eEEeccccccEEEEEEcCCCCEEEEEeCCCc-E
Q 010883          283 CFGDESGHLIYS--GSDDNLCKVWDRRCLNV-----------KGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQA-I  347 (498)
Q Consensus       283 ~~~~~~~~~l~s--~s~dg~i~vwd~~~~~~-----------~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~-i  347 (498)
                      ++++   .++++  |+.||.|++||++....           ...+ +..+.+|...|++++|+|++++|++++.|++ |
T Consensus       144 ~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          144 EFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             EEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             EEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence            6663   55655  68999999999973210           0012 6788999999999999999999999999998 9


Q ss_pred             EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-c-CceeEEEEEEEeccccCCCCcEEEEEec
Q 010883          348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-G-HSVLRTLIRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~  425 (498)
                      ++||+++                                  ++.+..+. + |...  +    .+.+|+|++++|++++.
T Consensus       221 ~iwd~~~----------------------------------~~~~~~~~~g~h~~~--v----~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          221 RVFKTED----------------------------------GVLVREFRRGLDRAD--V----VDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             EEEETTT----------------------------------CCEEEEEECTTCCSC--E----EEEEECTTSCEEEEEET
T ss_pred             EEEECCC----------------------------------CcEEEEEEcCCCCCc--E----EEEEECCCCCEEEEEEC
Confidence            9999987                                  35666666 3 5432  2    23367789999999999


Q ss_pred             CCeEEEEECCCCcE--EEEec---------------------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          426 DSCVYVYDLVSGEQ--VAALK---------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       426 dg~i~iwd~~~~~~--~~~~~---------------------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      |+.|++||+..+..  ...+.                     .+..+...++|+++++.|++++.||.+++|++..++..
T Consensus       261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred             CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence            99999999976531  11111                     11233477899999999999999999999999877655


Q ss_pred             CC
Q 010883          483 AP  484 (498)
Q Consensus       483 ~~  484 (498)
                      ..
T Consensus       341 ~~  342 (355)
T 3vu4_A          341 ER  342 (355)
T ss_dssp             TE
T ss_pred             ce
Confidence            43

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-35  Score=280.07  Aligned_cols=269  Identities=10%  Similarity=-0.014  Sum_probs=206.1

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      .....|.+++|||||+++|+++.|++|+  |...+..      ..+|...|.+++|+|+|       .++.+.+|+.   
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~------l~gh~~~v~~V~FsPdg-------~~~~~~~~~~---   74 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD------INCNSKNLFHVKEFPLE-------FENKLDFELA---   74 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC------CSSBGGGTEEEEEECCC-------CCCTTTTSCC---
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccce------ecCCCccEEEEEECCCC-------CcceEEEEeC---
Confidence            3467899999999999999999999999  7555422      25889999999999999       4555545443   


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC-----CeeEEE
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-----DVNTVC  283 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~  283 (498)
                      +.......               +|...|.+++|+|+|+.||+++.||.|++||...  ++..+. |..     .|.+++
T Consensus        75 ~~~~~~~~---------------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sva  136 (588)
T 2j04_A           75 QQNGLLNS---------------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFE  136 (588)
T ss_dssp             CSSCSSTT---------------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEE
T ss_pred             CCceEeec---------------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEE
Confidence            32222221               1234799999999999999999999999999654  555555 665     499999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCC---ceeEEe----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKG---KPAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~----~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      |+ |++++|++|+.||+|++||+.......   -.+..+    .+|...|.+++|+|||  +++++.|+.|++||+....
T Consensus       137 fS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          137 WN-PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EC-SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             Ec-CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence            98 899999999999999999997321100   035665    6788899999999999  8889999999999998733


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                      ..                               ....++. +|..  .+    .+.+|+  |++||+++ ++.|++||+.
T Consensus       214 ~~-------------------------------~~~~tL~~~h~~--~V----~svaFs--g~~LASa~-~~tIkLWd~~  253 (588)
T 2j04_A          214 HQ-------------------------------PVSRMIQNASRR--KI----TDLKIV--DYKVVLTC-PGYVHKIDLK  253 (588)
T ss_dssp             SC-------------------------------CCEEEEECCCSS--CC----CCEEEE--TTEEEEEC-SSEEEEEETT
T ss_pred             cc-------------------------------cceeeecccccC--cE----EEEEEE--CCEEEEEe-CCeEEEEECC
Confidence            10                               1223342 4432  12    222455  57888887 6999999999


Q ss_pred             CCcEEEEeccCCCCeeeeEE--cCCCCeEEEEeCCCcEEEecCC
Q 010883          436 SGEQVAALKYHTSPVRDCSW--HPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       436 ~~~~~~~~~~h~~~v~~l~~--sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      +++......+|...|.+++|  +|++..|++++.||+ ++|.++
T Consensus       254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            88874444479999999999  999999999999999 999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-33  Score=291.58  Aligned_cols=267  Identities=20%  Similarity=0.281  Sum_probs=205.0

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ..+.+|...|.+++|+|+|++|++|+.||+|+|||+.++.....   ..+|...|.+++|+|++++|++++.|++|++||
T Consensus       424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR---FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE---EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            35789999999999999999999999999999999999865543   357888999999999999999999999999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      ...........             ...+|...|.+++|+|++  ..|++|+.|+.|++||+.+++....+.+|.+.|+++
T Consensus       501 ~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v  567 (694)
T 3dm0_A          501 TLGECKYTISE-------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV  567 (694)
T ss_dssp             TTSCEEEEECS-------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCCcceeecc-------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            86543322211             112577789999999987  589999999999999999999999999999999999


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      +|+ +++++|++|+.||.|++||++    .++.+..+. +...|.+++|+|++.+|++++ ++.|++||+++........
T Consensus       568 ~~s-pdg~~l~sg~~Dg~i~iwd~~----~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          568 AVS-PDGSLCASGGKDGVVLLWDLA----EGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             EEC-TTSSEEEEEETTSBCEEEETT----TTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred             EEe-CCCCEEEEEeCCCeEEEEECC----CCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence            998 789999999999999999998    667766665 456899999999998887765 5569999998754322111


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                      .......                     ......++.........+.+++|||+|++|++|+.||.|+|||+.
T Consensus       641 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          641 VDLKAEA---------------------EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCC-------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccccc---------------------ccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            0000000                     000000000000000012345688899999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-33  Score=268.67  Aligned_cols=251  Identities=18%  Similarity=0.270  Sum_probs=202.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      |...|++++|+|+|++|++|+.||.|++||+.++..+...   ..|...|.+++|  ++++|++++.|+.|++||+....
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~  207 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM---AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN  207 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe---cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence            8999999999999999999999999999999988665543   477889999999  56899999999999999998433


Q ss_pred             -eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883          210 -MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  288 (498)
Q Consensus       210 -~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  288 (498)
                       .....                .+|...|.+++|+|++++|++|+.|+.|++||+.+++....+..|...|.+++|+|.+
T Consensus       208 ~~~~~~----------------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~  271 (401)
T 4aez_A          208 HQIGTL----------------QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ  271 (401)
T ss_dssp             CEEEEE----------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred             ceeeEE----------------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence             22111                1466789999999999999999999999999999999999999999999999999666


Q ss_pred             CCEEEEee--CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCCCccccccC
Q 010883          289 GHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       289 ~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      ..++++++  .|+.|++||++    .+..+..+. +...|.+++|+|++++|+++  +.||.|++||+.+...       
T Consensus       272 ~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-------  339 (401)
T 4aez_A          272 SNLLATGGGTMDKQIHFWNAA----TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-------  339 (401)
T ss_dssp             TTEEEEECCTTTCEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-------
T ss_pred             CCEEEEecCCCCCEEEEEECC----CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-------
Confidence            78888876  79999999998    677777775 66789999999999999994  4899999999876321       


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  444 (498)
                                               .....+.+|...  +    ...+|+|++++|++++.||.|++||+.+++.+....
T Consensus       340 -------------------------~~~~~~~~h~~~--v----~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          340 -------------------------TKQVDIPAHDTR--V----LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             -------------------------EEEEEEECCSSC--C----CEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             -------------------------eeEEEecCCCCC--E----EEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence                                     222234455422  2    223677799999999999999999999988776543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.3e-33  Score=269.27  Aligned_cols=267  Identities=13%  Similarity=0.103  Sum_probs=211.2

Q ss_pred             CCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883          174 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  253 (498)
Q Consensus       174 ~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~  253 (498)
                      .|..+|++++|+|++++|++++.|+.|++||+.+++......+.              +|...|.+++|+|++++|++++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~l~~~~   71 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------------EHNGQVTGVDWAPDSNRIVTCG   71 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------------CCSSCEEEEEEETTTTEEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--------------CCCCcccEEEEeCCCCEEEEEc
Confidence            36678999999999999999999999999999887522221111              4666899999999999999999


Q ss_pred             CCCeEEEEECCCCeeeEEE--eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883          254 SDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS  331 (498)
Q Consensus       254 ~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~  331 (498)
                      .||.|++||+.+++....+  ..|...|.+++|+ +++++|++++.||.|++||++..............|...|.+++|
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             CCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence            9999999999988754443  5789999999998 788999999999999999997221100123344678999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883          332 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP  411 (498)
Q Consensus       332 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (498)
                      +|++++|++++.|+.|++||++..........                .........+..+..+..|....      .++
T Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~v------~~~  208 (372)
T 1k8k_C          151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP----------------TPWGSKMPFGELMFESSSSCGWV------HGV  208 (372)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCC----------------BTTBSCCCTTCEEEECCCCSSCE------EEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEcccccccccccc----------------cccccccchhhheEecCCCCCeE------EEE
Confidence            99999999999999999999875332111000                00000112245666666665322      223


Q ss_pred             ccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      +|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|+++ .||.|++|++..
T Consensus       209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            567799999999999999999999999999999999999999999999988877 899999999987

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-35  Score=280.82  Aligned_cols=261  Identities=14%  Similarity=0.156  Sum_probs=197.6

Q ss_pred             CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      +..+|++++|+|++++|++++.|+.|++||+.++.......+              .+|...|.+++|+|++++|++++.
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------------~~h~~~v~~~~~s~~~~~l~s~s~   75 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF--------------SDHDKIVTCVDWAPKSNRIVTCSQ   75 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB--------------CCCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE--------------ecCCceEEEEEEeCCCCEEEEEeC
Confidence            344899999999999999999999999999987732111111              257779999999999999999999


Q ss_pred             CCeEEEEECCCCe---eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc---eeEEecc-ccccEE
Q 010883          255 DDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVLMG-HLEGIT  327 (498)
Q Consensus       255 dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~-~~~~v~  327 (498)
                      |+.|++||+.+++   ....+..|...|.+++|+ +++++|++++.|+.|++||++    ...   ....+.. |...|.
T Consensus        76 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~h~~~v~  150 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFE----QENDWWVSKHLKRPLRSTIL  150 (377)
T ss_dssp             TSSEEEC------CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC---------CCCCEEECSSCCSCEE
T ss_pred             CCeEEEEEcCCCCceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEEC----CcccceeeeEeecccCCCeE
Confidence            9999999999887   566777899999999998 788999999999999999997    433   4667777 999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883          328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC  407 (498)
Q Consensus       328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (498)
                      +++|+|++++|++++.|+.|++||++...........    .+.            .....+..+..+ +|...  +   
T Consensus       151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~------------~~~~~~~~~~~~-~~~~~--v---  208 (377)
T 3dwl_C          151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS----VWG------------SRLPFNTVCAEY-PSGGW--V---  208 (377)
T ss_dssp             EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC----SSC------------SCCCEEEEEECC-CCSSS--E---
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc----ccc------------cccchhhhhhcc-cCCce--E---
Confidence            9999999999999999999999999754321111000    000            000112334444 44422  2   


Q ss_pred             EeccccCCCCcEEEEEecCCeEEEEECCCCcE----EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                       .+++|+|++++|++++.||.|++||+.+++.    +..+.+|..+|.+++|+|++++|++++.|+.+ +|+...
T Consensus       209 -~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          209 -HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             -EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             -EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence             2336777999999999999999999999887    77888999999999999999999998866655 666653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-34  Score=294.90  Aligned_cols=264  Identities=19%  Similarity=0.181  Sum_probs=212.9

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHI  202 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i~i  202 (498)
                      ..+.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .......+|...|++++|+|+  +++|++++.||.|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            45789999999999999999999999999999999985422 233345678889999999998  999999999999999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCC
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSD  278 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~  278 (498)
                      ||+.+++.......              .+|...|.+++|+|+  ++.+++|+.||.|++||+.++.  ....+..|...
T Consensus        82 wd~~~~~~~~~~~~--------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~  147 (753)
T 3jro_A           82 WKEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (753)
T ss_dssp             EEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred             EECCCCcccccccc--------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence            99988753222221              146679999999999  9999999999999999998873  34566789999


Q ss_pred             eeEEEEeCC------------CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC---CCEEEEEeC
Q 010883          279 VNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK  343 (498)
Q Consensus       279 v~~~~~~~~------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~~~  343 (498)
                      |.+++|+|.            ++.+|++|+.||.|++||++...........+.+|...|++++|+|+   +.+|++++.
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence            999999853            58899999999999999998433233566788899999999999999   899999999


Q ss_pred             CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE
Q 010883          344 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG  423 (498)
Q Consensus       344 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  423 (498)
                      ||.|++||++......                                                                
T Consensus       228 Dg~I~iwd~~~~~~~~----------------------------------------------------------------  243 (753)
T 3jro_A          228 DRTCIIWTQDNEQGPW----------------------------------------------------------------  243 (753)
T ss_dssp             SSCEEEEEESSSSSCC----------------------------------------------------------------
T ss_pred             CCEEEEecCCCCCCcc----------------------------------------------------------------
Confidence            9999999987632100                                                                


Q ss_pred             ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                                   ...+.....|...|++++|+|++++|++++.||.|++|++....
T Consensus       244 -------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          244 -------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             -------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             -------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence                         00011223577889999999999999999999999999998644

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-33  Score=272.08  Aligned_cols=263  Identities=14%  Similarity=0.164  Sum_probs=208.1

Q ss_pred             CCccccCCCCceEEEEEcCC----C---CEEEEEECCCeEEEEECCCCeE-----EEEEeecCCC-----ceeEEEEEeC
Q 010883          123 GPWPVDQTTSRAYVSQFSAD----G---SLFVAGFQASQIRIYDVERGWK-----IQKDILAKSL-----RWTVTDTSLS  185 (498)
Q Consensus       123 ~~~~l~~h~~~v~~~~~s~d----g---~~la~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~-----~~~v~~~~~s  185 (498)
                      ....+.+|...|++++|+|+    |   ++|++++.||.|++|++.++..     +...   ..|     ...|.+++|+
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~  130 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL---DLLDSDMKKHSFWALKWG  130 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE---CCSCTTGGGSCEEEEEEE
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee---cccccccCCCcEEEEEEe
Confidence            35567799999999999999    9   9999999999999999987753     3332   344     4789999999


Q ss_pred             ----CCCCe-EEEEECCCeEEEEECCC------CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          186 ----PDQRH-LVYASMSPIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       186 ----p~~~~-l~~~s~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                          |++++ |++++.|+.|++||+.+      ++............    .......|...|.+++|+|++ +|++++.
T Consensus       131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~  205 (397)
T 1sq9_A          131 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG----TVESPMTPSQFATSVDISERG-LIATGFN  205 (397)
T ss_dssp             CCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE----EECCSSSSCCCCCEEEECTTS-EEEEECT
T ss_pred             eccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee----eeccccCCCCCceEEEECCCc-eEEEEeC
Confidence                99999 99999999999999987      44332100000000    000012356689999999999 9999999


Q ss_pred             CCeEEEEECCCCeeeEEEec---c---CCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCceeEEecc----
Q 010883          255 DDCIYVYDLEANKLSLRILA---H---TSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMG----  321 (498)
Q Consensus       255 dg~i~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~----  321 (498)
                      ||.|++||+.+++.+..+..   |   ...|.+++|+ +++.+|++++.|   |.|++||++    ..+.+..+..    
T Consensus       206 dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~----~~~~~~~~~~~~~~  280 (397)
T 1sq9_A          206 NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETE----FGERIGSLSVPTHS  280 (397)
T ss_dssp             TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETT----TCCEEEEECBC---
T ss_pred             CCcEEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECC----CCcccceeccCccc
Confidence            99999999999999999988   9   9999999998 789999999999   999999998    7788888888    


Q ss_pred             ---------ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          322 ---------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       322 ---------~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                               |...|.+++|+|++++|++++.|+.|++||+++.                                  +.+
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------~~~  326 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----------------------------------ERI  326 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----------------------------------EEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----------------------------------cee
Confidence                     9999999999999999999999999999999873                                  334


Q ss_pred             EEEc------cC---------------ceeEEEEEEEeccccCCCC----------cEEEEEecCCeEEEEECCCCc
Q 010883          393 ATYK------GH---------------SVLRTLIRCHFSPVYSTGQ----------KYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       393 ~~~~------~~---------------~~~~~~~~~~~~~~~s~~~----------~~l~~g~~dg~i~iwd~~~~~  438 (498)
                      ..+.      .|               .  ..+.    .++|+|++          ++|++++.||.|++||+.+|+
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~v~----~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          327 TTLNMHCDDIEIEEDILAVDEHGDSLAE--PGVF----DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEEECCGGGCSSGGGCCCBCTTSCBCSS--CCEE----EEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             EEEecccCcccchhhhhccccccccccC--Ccee----EEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            4444      33               2  2222    33556687          799999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-33  Score=269.14  Aligned_cols=300  Identities=15%  Similarity=0.163  Sum_probs=197.8

Q ss_pred             eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeEEEEEC----CCCce------eccccccccccC
Q 010883          154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV----GSGTM------ESLANVTEIHDG  222 (498)
Q Consensus       154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i~iwd~----~~~~~------~~~~~~~~~~~~  222 (498)
                      .+.+|++......   .....|...|++++|+|+++ +|++++.|+.|++|++    .+++.      ........  . 
T Consensus        26 ~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~-   99 (425)
T 1r5m_A           26 IDSSDDLDGFVKI---LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPF--A-   99 (425)
T ss_dssp             --------CCCEE---CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCC--C-
T ss_pred             ccccccchhhhhh---eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccc--c-
Confidence            4567887665322   33345556899999999999 9999999999999999    77762      11111100  0 


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEE
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK  302 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  302 (498)
                         ......+|...|.+++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+ +++++|++++.||.|+
T Consensus       100 ---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~  174 (425)
T 1r5m_A          100 ---LSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMDVENVTI  174 (425)
T ss_dssp             ---CC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCCEE
T ss_pred             ---ccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC-CCCCEEEEEecCCeEE
Confidence               0011224677999999999999999999999999999 6777888888999999999998 7899999999999999


Q ss_pred             EEcCccccCCCceeEEecccccc---------------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883          303 VWDRRCLNVKGKPAGVLMGHLEG---------------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       303 vwd~~~~~~~~~~~~~~~~~~~~---------------v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      +||+.    .+..+..+..+...               +.++.|+|++ .+++++.|+.|++||++..........    
T Consensus       175 iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~----  245 (425)
T 1r5m_A          175 LWNVI----SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG----  245 (425)
T ss_dssp             EEETT----TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC----
T ss_pred             EEECC----CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc----
Confidence            99997    45555554444443               5555555543 345555555555555554433222110    


Q ss_pred             ccccceeecCCcCcccccCC-C-----------CceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          368 YEWDYRWMDYPPQARDLKHP-C-----------DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                      ....+..+.+.++...+... .           ...+..+..|...  +    .++.|+|++ ++++++.||.|++||+.
T Consensus       246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--i----~~~~~~~~~-~l~~~~~d~~i~i~d~~  318 (425)
T 1r5m_A          246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS--I----VSASWVGDD-KVISCSMDGSVRLWSLK  318 (425)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC--E----EEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc--E----EEEEECCCC-EEEEEeCCCcEEEEECC
Confidence            01111222222222111111 1           2233334334321  2    233566688 99999999999999999


Q ss_pred             CCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       436 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +++.+..+..|...|.+++|+|++++|++++.||.|++|++....
T Consensus       319 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             CCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            999999999999999999999999999999999999999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-34  Score=270.13  Aligned_cols=283  Identities=9%  Similarity=0.038  Sum_probs=211.7

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883          137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV  216 (498)
Q Consensus       137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~  216 (498)
                      ..+.+++++|++|+.||.|++||+.+++.+....     ...|.++.|+|+   +++++.|+.|++|+............
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence            3456788999999999999999999987665543     346888899998   99999999999998775321111100


Q ss_pred             cccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEE
Q 010883          217 TEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIY  293 (498)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~  293 (498)
                      ....      .....+|..+|.+++|+|  ++++|++++.||.|++||+.+++...... .|...|.+++|+ +++.+|+
T Consensus       114 ~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~la  186 (343)
T 3lrv_A          114 NKVL------REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLA  186 (343)
T ss_dssp             CCEE------EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEE
T ss_pred             ccee------EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEE
Confidence            0000      000113556899999999  99999999999999999999998866553 456689999998 7899999


Q ss_pred             EeeCCCeEEEEcCccccCCCcee-EEecc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccc
Q 010883          294 SGSDDNLCKVWDRRCLNVKGKPA-GVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD  371 (498)
Q Consensus       294 s~s~dg~i~vwd~~~~~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  371 (498)
                      +|+.||.|++||++    .+..+ ..+.. |..+|++++|+|++.+|++++ |+.|++||+++.......          
T Consensus       187 sg~~dg~i~iwd~~----~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~----------  251 (343)
T 3lrv_A          187 LYSPDGILDVYNLS----SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY----------  251 (343)
T ss_dssp             EECTTSCEEEEESS----CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS----------
T ss_pred             EEcCCCEEEEEECC----CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee----------
Confidence            99999999999998    66665 67777 999999999999999999999 559999999985432211          


Q ss_pred             ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCcEEEEeccCCCCe
Q 010883          372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPV  450 (498)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v  450 (498)
                                           ..+..+......    .+.+|+|++++|++++. |+.|++|++.........    .++
T Consensus       252 ---------------------~~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~  302 (343)
T 3lrv_A          252 ---------------------PTYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEE  302 (343)
T ss_dssp             ---------------------CCCBC-----CC----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEE
T ss_pred             ---------------------cccccccccccc----eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCc
Confidence                                 001111100000    22467789999999998 999999999766543332    568


Q ss_pred             eeeEEcC---CCCeEEEEeCCCcEEEecCCC
Q 010883          451 RDCSWHP---SQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       451 ~~l~~sp---~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      ..++|.+   +...|++++.||.+.++-...
T Consensus       303 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          303 SALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             EECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             eeEecCccccccceeEEEecCCceEEEEecC
Confidence            8899998   888999999999999886443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.1e-32  Score=254.92  Aligned_cols=274  Identities=19%  Similarity=0.259  Sum_probs=211.1

Q ss_pred             EEECCCe--EEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCcc
Q 010883          148 AGFQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD  224 (498)
Q Consensus       148 ~~~~dg~--i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (498)
                      +|...|+  +.++...+. .+.....+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+.+........       
T Consensus         9 ~g~d~g~~~~~~~~~~~~-~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~-------   80 (340)
T 4aow_A            9 SGVDLGTENLYFQSMMTE-QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR-------   80 (340)
T ss_dssp             -----------------C-EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE-------
T ss_pred             cccCCCCccEEEEEccCC-ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE-------
Confidence            3444454  334444333 23333346789999999999997 689999999999999999876532211111       


Q ss_pred             ccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883          225 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW  304 (498)
Q Consensus       225 ~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vw  304 (498)
                          ...+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.++ +.+.+|++++.|+.+++|
T Consensus        81 ----~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~  155 (340)
T 4aow_A           81 ----ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLW  155 (340)
T ss_dssp             ----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEE
T ss_pred             ----EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe-ecCccceeecCCCeEEEE
Confidence                113578899999999999999999999999999999999888888888999999997 788899999999999999


Q ss_pred             cCccccCCCceeEEeccccccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883          305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR  382 (498)
Q Consensus       305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      |+..   .........+|...+..++|++++  .++++++.|+.|++||+++                            
T Consensus       156 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~----------------------------  204 (340)
T 4aow_A          156 NTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN----------------------------  204 (340)
T ss_dssp             CTTS---CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT----------------------------
T ss_pred             EeCC---CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC----------------------------
Confidence            9861   223444567889999999998764  5788999999999999987                            


Q ss_pred             cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeE
Q 010883          383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML  462 (498)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l  462 (498)
                            .+.+..+.+|.....      +.+|+|++++|++|+.||.|++||+.+.+.+..+.. ...|.+++|+|++. +
T Consensus       205 ------~~~~~~~~~h~~~v~------~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~  270 (340)
T 4aow_A          205 ------CKLKTNHIGHTGYLN------TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRY-W  270 (340)
T ss_dssp             ------TEEEEEECCCSSCEE------EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSS-E
T ss_pred             ------CceeeEecCCCCcEE------EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCc-e
Confidence                  355666777764322      235677999999999999999999999999988875 46899999999876 5


Q ss_pred             EEEeCCCcEEEecCCCC
Q 010883          463 VSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       463 ~s~~~Dg~i~iw~~~~~  479 (498)
                      ++++.|+.|++||+...
T Consensus       271 ~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          271 LCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             EEEEETTEEEEEETTTT
T ss_pred             eeccCCCEEEEEECCCC
Confidence            55667999999999765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.2e-33  Score=269.48  Aligned_cols=262  Identities=11%  Similarity=0.076  Sum_probs=182.9

Q ss_pred             eCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--------CCCEEEEEeCC
Q 010883          184 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--------DGRELVAGSSD  255 (498)
Q Consensus       184 ~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--------~g~~l~~g~~d  255 (498)
                      +.+++.+|++++.|++|+|||+.++.........           ...+|...|.+++|+|        |+++||+|+.|
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~-----------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLG-----------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEEC-----------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeec-----------ccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            3445678999999999999999887654322211           2347899999999998        88999999999


Q ss_pred             CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCce--------------------
Q 010883          256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--------------------  315 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--------------------  315 (498)
                      ++|+|||+.++..+..+..|..+|.+++|+|.+..+|++|+.||+|++||++........                    
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            999999999988888888999999999999655678999999999999999733211100                    


Q ss_pred             -eEEeccccccEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE
Q 010883          316 -AGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA  393 (498)
Q Consensus       316 -~~~~~~~~~~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (498)
                       .....+|...+.++.|+ |+++.|++++.|+.+++||+...........    .........+.++           ..
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~----~~~~~~~~~~~~~-----------~~  310 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD----STMKLGPKNLLPN-----------VQ  310 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCS-----------EE
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee----ecCccccEEEccc-----------cc
Confidence             11224577788899986 7999999999999999999987543222110    0000001111111           11


Q ss_pred             EEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883          394 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR  473 (498)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i  473 (498)
                      ....+..   .....+.+  ..++.++++|+.||.|++||+.+++.+..+..|..+|++++|+|||++||+++.|| +.+
T Consensus       311 ~~~~~~~---~~~~~~~~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l  384 (393)
T 4gq1_A          311 GISLFPS---LLGACPHP--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL  384 (393)
T ss_dssp             EECSSCC---SSCCEECS--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred             cccccCc---ceeEEEcc--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence            1111110   11111221  23667788899999999999999998888888999999999999999999999776 555


Q ss_pred             ecCC
Q 010883          474 WEFP  477 (498)
Q Consensus       474 w~~~  477 (498)
                      |.+.
T Consensus       385 vrL~  388 (393)
T 4gq1_A          385 TRLM  388 (393)
T ss_dssp             EEEG
T ss_pred             EEEe
Confidence            5543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.4e-33  Score=266.74  Aligned_cols=255  Identities=15%  Similarity=0.213  Sum_probs=205.4

Q ss_pred             CCCCceEEEEEcCC----CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEE
Q 010883          129 QTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV  203 (498)
Q Consensus       129 ~h~~~v~~~~~s~d----g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iw  203 (498)
                      .|...|++++|+|+    |++|++|+.||.|++||+.+++.+...   ..|...|.+++|+| ++++|++++.|+.|++|
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY---VGHGNAINELKFHPRDPNLLLSVSKDHALRLW  143 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE---ESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee---cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            37788999999999    679999999999999999988665543   46778999999999 99999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe----------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL----------  273 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~----------  273 (498)
                      |+.+++........             .+|...|.+++|+|++++|++++.||.|++||+.+++....+.          
T Consensus       144 d~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (366)
T 3k26_A          144 NIQTDTLVAIFGGV-------------EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT  210 (366)
T ss_dssp             ETTTTEEEEEECST-------------TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred             EeecCeEEEEeccc-------------ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence            99988765443211             1466699999999999999999999999999999876543332          


Q ss_pred             ------------------ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC----------CCceeEEecccccc
Q 010883          274 ------------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEG  325 (498)
Q Consensus       274 ------------------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~~  325 (498)
                                        .|...|.+++|+   +++|++++.||.|++||++....          ....+..+..|...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (366)
T 3k26_A          211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD  287 (366)
T ss_dssp             SSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred             cccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence                              399999999997   66999999999999999873321          11346778889999


Q ss_pred             EEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          326 ITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       326 v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      |++++|+|+  +++|++++.||.|++||+.......                              ..+..+..|.....
T Consensus       288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------------~~~~~~~~~~~~~~  337 (366)
T 3k26_A          288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------------------------------AKCTTLTHHKCGAA  337 (366)
T ss_dssp             SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG------------------------------CEEEEECCTTCCSC
T ss_pred             EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc------------------------------ccceEEcccccCCc
Confidence            999999999  9999999999999999998743211                              23445565532233


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                      +..+    +|+|++++|++++.||.|++||+.+
T Consensus       338 v~~~----~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          338 IRQT----SFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEE----EECTTSSEEEEEETTSEEEEEEC--
T ss_pred             eEEE----EeCCCCCeEEEEeCCCEEEEEEecC
Confidence            3333    5667999999999999999999853

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-32  Score=258.90  Aligned_cols=271  Identities=13%  Similarity=0.059  Sum_probs=218.9

Q ss_pred             ccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE
Q 010883          114 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY  193 (498)
Q Consensus       114 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  193 (498)
                      .+++....+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+....    +...|.+++|+|++++|++
T Consensus        57 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~  132 (369)
T 3zwl_B           57 SVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGNYFLA  132 (369)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSSEEEE
T ss_pred             EEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----cCCCeEEEEEccCCCEEEE
Confidence            344444444556778999999999999999999999999999999999987666543    5558999999999999999


Q ss_pred             EECC-----CeEEEEECCCCceeccccccccccCccccccCCCCcee--cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-
Q 010883          194 ASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEA-  265 (498)
Q Consensus       194 ~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-  265 (498)
                      ++.+     +.|++||+..+...............     ....|..  .+.+++|+|++++|++++.||.|++||+.+ 
T Consensus       133 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  207 (369)
T 3zwl_B          133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH-----KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN  207 (369)
T ss_dssp             EECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE-----EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred             ecCCccCCCCEEEEEEecCCccceeecccccceee-----eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            9998     99999999776543222111100000     0012233  799999999999999999999999999998 


Q ss_pred             CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC
Q 010883          266 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ  345 (498)
Q Consensus       266 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg  345 (498)
                      .+.+..+..|...|.+++|+ +++.+|++++.||.|++||++    ....+..+. +...+..++|+|+++++++++.++
T Consensus       208 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          208 YEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVS----TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             TEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC
T ss_pred             cEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECC----CCceeeeec-CCCCceeEEecCCCceEEEeecCC
Confidence            78888888999999999998 789999999999999999998    667777766 778999999999999999999988


Q ss_pred             --------------cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883          346 --------------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP  411 (498)
Q Consensus       346 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (498)
                                    .+++||+.+                                  ...+..+.+|....      .++
T Consensus       282 ~~~~~~~~~~~~~~~i~~~d~~~----------------------------------~~~~~~~~~~~~~v------~~~  321 (369)
T 3zwl_B          282 AKDVTTTSANEGKFEARFYHKIF----------------------------------EEEIGRVQGHFGPL------NTV  321 (369)
T ss_dssp             -------------CEEEEEETTT----------------------------------CCEEEEEECCSSCE------EEE
T ss_pred             CceEEEEecCCCcceeEEEecCC----------------------------------CcchhheecccCcE------EEE
Confidence                          788888876                                  35666666665332      223


Q ss_pred             ccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                      +|+|++++|++++.||.|++|++..+..
T Consensus       322 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          322 AISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             EECCCCCEEEEEcCCCeEEEEECccccc
Confidence            6777999999999999999999987654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5e-33  Score=272.27  Aligned_cols=267  Identities=13%  Similarity=0.158  Sum_probs=196.9

Q ss_pred             CCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCce------------ecEEEEE
Q 010883          174 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS------------FGIFSLK  241 (498)
Q Consensus       174 ~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~i~~~~  241 (498)
                      .+...|++++|+|++++||+|+.||.|+||++.+++...........     ......+|.            ..|.+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYN-----VYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEE-----EEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccccee-----EecccccccccccccccccccCceEEEE
Confidence            34568999999999999999999999999999876521100000000     000011354            6899999


Q ss_pred             EcCCC--CEEEEEeCCCeEEEEECCCCeee---------------------------------------EE-EeccCCCe
Q 010883          242 FSTDG--RELVAGSSDDCIYVYDLEANKLS---------------------------------------LR-ILAHTSDV  279 (498)
Q Consensus       242 ~s~~g--~~l~~g~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v  279 (498)
                      |+|++  ..|++++.|+.|++||+.+++..                                       .. ..+|...|
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99998  79999999999999999764432                                       12 24799999


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE-------EeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-------VLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWD  351 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd  351 (498)
                      .+++|+ +++++|++| .|+.|++||++..   .....       .+.+|...|++++|+|++ ++|++++.||.|++||
T Consensus       181 ~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          181 NSISIN-SDYETYLSA-DDLRINLWHLEIT---DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             CEEEEC-TTSSEEEEE-CSSEEEEEETTEE---EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             EEEEEc-CCCCEEEEe-CCCeEEEEECCCC---CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence            999998 689999998 7999999999621   12222       356899999999999998 9999999999999999


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE------EEEEeccccCCCCcEEEEEec
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL------IRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~l~~g~~  425 (498)
                      +++.....                              ..+..+..+......      .....+++|+|++++|++++.
T Consensus       256 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          256 MRASALCD------------------------------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             TTTCSSSC------------------------------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             CcCCcccc------------------------------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            98744210                              113344444310000      001233467779999999999


Q ss_pred             CCeEEEEECCC-CcEEEEeccCCCC---------------eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          426 DSCVYVYDLVS-GEQVAALKYHTSP---------------VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       426 dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                       +.|++||+.+ ++++..+.+|...               +..++|+|++++|++++.||.|++||+.++..
T Consensus       306 -~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          306 -LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             -SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             -CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence             9999999997 8888888888542               23499999999999999999999999987653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.9e-32  Score=260.99  Aligned_cols=280  Identities=17%  Similarity=0.229  Sum_probs=213.8

Q ss_pred             ccccccccccCCCCCc--cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC
Q 010883          110 DCCHMLSRYLPVNGPW--PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD  187 (498)
Q Consensus       110 ~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  187 (498)
                      +....+++.-..+...  .+.+|...|++++|+|||++||+|+.||.|+|||+.+++.+..   ..+|...+.++++  +
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~---~~~h~~~v~~~s~--~  198 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN---MTSHSARVGSLSW--N  198 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEE--E
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE---EeCCCCceEEEee--C
Confidence            3444444443333222  3467889999999999999999999999999999999966554   3577778988877  5


Q ss_pred             CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883          188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       188 ~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                      +.+|++++.|+.+++||.......... .              .+|...+..+.|+|+++++++++.|+.|++|+..+++
T Consensus       199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~-~--------------~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          199 SYILSSGSRSGHIHHHDVRVAEHHVAT-L--------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEE-E--------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             CCEEEEEeCCCceeEeeecccceeeEE-e--------------cccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            789999999999999998765432111 0              1466789999999999999999999999999998765


Q ss_pred             ----eeEEEeccCCCeeEEEEeCCCCCEEEEe--eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE
Q 010883          268 ----LSLRILAHTSDVNTVCFGDESGHLIYSG--SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       268 ----~~~~~~~~~~~v~~~~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  341 (498)
                          .+.....|...|.+++|+|.+..+++++  +.|++|++||+.    .+.....+..| ..+.++.|+|+++.++++
T Consensus       264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDAH-SQVCSILWSPHYKELISG  338 (420)
T ss_dssp             SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT----TTEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred             ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC----ccccceeeccc-cceeeeeecCCCCeEEEE
Confidence                3456678999999999998788888764  579999999998    77777777654 678899999999998876


Q ss_pred             e--CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883          342 G--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY  419 (498)
Q Consensus       342 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  419 (498)
                      +  .|+.|+|||+.+                                  ...+..+.+|.....      +++|+|||++
T Consensus       339 sg~~d~~I~iwd~~~----------------------------------~~~v~~l~gH~~~V~------~l~~spdg~~  378 (420)
T 4gga_A          339 HGFAQNQLVIWKYPT----------------------------------MAKVAELKGHTSRVL------SLTMSPDGAT  378 (420)
T ss_dssp             ECTTTCCEEEEETTT----------------------------------CCEEEEECCCSSCEE------EEEECTTSSC
T ss_pred             EecCCCEEEEEECCC----------------------------------CcEEEEEcCCCCCEE------EEEEcCCCCE
Confidence            5  789999999987                                  467888888874332      3367789999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeE
Q 010883          420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS  454 (498)
Q Consensus       420 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~  454 (498)
                      |++|+.|++|+|||+....+....+.+...+....
T Consensus       379 l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s  413 (420)
T 4gga_A          379 VASAAADETLRLWRCFELDPARRREREKASAAKSS  413 (420)
T ss_dssp             EEEEETTTEEEEECCSCSSCC--------------
T ss_pred             EEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence            99999999999999987766655555544443333

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=249.00  Aligned_cols=241  Identities=20%  Similarity=0.229  Sum_probs=204.4

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|...|++++| |++++|++++.||.|++||+.++.......                .|...|.+++|+|++++|+
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~   75 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY----------------TGQGFLNSVCYDSEKELLL   75 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE----------------ECSSCEEEEEEETTTTEEE
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee----------------cCCccEEEEEECCCCCEEE
Confidence            44678889999999 999999999999999999998876544332                2455899999999999999


Q ss_pred             EEeCCCeEEEEECCCC---eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883          251 AGSSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT  327 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  327 (498)
                      +++.||.|++|++...   +....+..|...|.+++|.   +++|++++.||.|++||      .......+..|...+.
T Consensus        76 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d------~~~~~~~~~~~~~~v~  146 (313)
T 3odt_A           76 FGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVW  146 (313)
T ss_dssp             EEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE------TTEEEEEEECCSSCEE
T ss_pred             EecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc------CCcEEEecccCCCcee
Confidence            9999999999998764   5567788999999999994   67999999999999999      3567788888999999


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEE
Q 010883          328 FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLI  405 (498)
Q Consensus       328 ~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  405 (498)
                      ++.|.| ++.+|++++.|+.|++||..                                    ..+..+.. +...  +.
T Consensus       147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------------~~~~~~~~~~~~~--i~  188 (313)
T 3odt_A          147 DAKVVSFSENKFLTASADKTIKLWQND------------------------------------KVIKTFSGIHNDV--VR  188 (313)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETT------------------------------------EEEEEECSSCSSC--EE
T ss_pred             EEEEccCCCCEEEEEECCCCEEEEecC------------------------------------ceEEEEeccCccc--EE
Confidence            999988 89999999999999999943                                    34444444 3322  22


Q ss_pred             EEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          406 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       406 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .    .+++|++. +++++.||.|++||+.+++.+..+.+|...|++++|+|++ .|++++.||.|++||+..+..
T Consensus       189 ~----~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~  258 (313)
T 3odt_A          189 H----LAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL  258 (313)
T ss_dssp             E----EEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE
T ss_pred             E----EEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce
Confidence            2    24556788 9999999999999999999999999999999999999999 699999999999999987653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.3e-32  Score=260.87  Aligned_cols=245  Identities=11%  Similarity=0.113  Sum_probs=192.5

Q ss_pred             cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883          128 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       128 ~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      .+|...|.+++|+| ++++|++++.|+.|++||+.+. .+........+...|.+++|+|++++|++++.|+.|++||+.
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  193 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD  193 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence            47999999999999 7899999999999999999864 555555555566789999999999999999999999999994


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCC----CeeeEEEeccCCCeeE
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA----NKLSLRILAHTSDVNT  281 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~  281 (498)
                       ++......                +|...|.+++|+|+++ +|++++.|+.|++||+.+    +..+..+ .|...|.+
T Consensus       194 -~~~~~~~~----------------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~  255 (383)
T 3ei3_B          194 -GHEIFKEK----------------LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNA  255 (383)
T ss_dssp             -SCEEEEEE----------------CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEE
T ss_pred             -CCEEEEec----------------cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEE
Confidence             33222211                4666899999999999 999999999999999987    5565555 79999999


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-----------------ccEEEEEEcCCCCEEEEEeCC
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----------------EGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~v~~l~~~~~~~~l~s~~~d  344 (498)
                      ++|+|.++.+|++++.|+.|++||++    .......+.+|.                 ..+..++|+|++++  +++.|
T Consensus       256 ~~~s~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d  329 (383)
T 3ei3_B          256 AYFNPTDSTKLLTTDQRNEIRVYSSY----DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK  329 (383)
T ss_dssp             EEECTTTSCEEEEEESSSEEEEEETT----BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred             EEEcCCCCCEEEEEcCCCcEEEEECC----CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence            99983389999999999999999998    333333443332                 34555677777776  77899


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS  424 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  424 (498)
                      +.|++||+.+                                  ++.+..+.++.....+.    ..+|+|++++|++|+
T Consensus       330 ~~i~iwd~~~----------------------------------~~~~~~l~~~~~~~~~~----~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          330 RTIDIYDANS----------------------------------GGLVHQLRDPNAAGIIS----LNKFSPTGDVLASGM  371 (383)
T ss_dssp             CCEEEEETTT----------------------------------CCEEEEECBTTBCSCCC----EEEECTTSSEEEEEE
T ss_pred             CeEEEEecCC----------------------------------CceeeeecCCCCCceEE----EEEEecCccEEEEec
Confidence            9999999987                                  35556666533111111    125777999999997


Q ss_pred             cCCeEEEEECCC
Q 010883          425 HDSCVYVYDLVS  436 (498)
Q Consensus       425 ~dg~i~iwd~~~  436 (498)
                       ||.|++||+.+
T Consensus       372 -d~~i~iw~~~~  382 (383)
T 3ei3_B          372 -GFNILIWNRED  382 (383)
T ss_dssp             -TTEEEEEECC-
T ss_pred             -CCcEEEEecCC
Confidence             99999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2e-32  Score=266.81  Aligned_cols=251  Identities=17%  Similarity=0.188  Sum_probs=196.5

Q ss_pred             CCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEE
Q 010883          174 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA  251 (498)
Q Consensus       174 ~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~  251 (498)
                      .|...|++++|+| ++++||+|+.||.|+|||+.+++......              ..+|...|++++|+| ++.+|++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------~~gH~~~V~~l~f~p~~~~~l~s  182 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------GIGAGGSITGLKFNPLNTNQFYA  182 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------------CCSSSCCCCEEEECSSCTTEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------------ccCCCCCEEEEEEeCCCCCEEEE
Confidence            3555799999999 56799999999999999998775433322              126888999999998 7899999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEec--cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          252 GSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      |+.||+|++||++++........  +...+.+++|+ +++.+|++|+.||.|++||++     ++.+..+.+|...|+++
T Consensus       183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-----~~~~~~~~~h~~~v~~v  256 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-----GKELWNLRMHKKKVTHV  256 (435)
T ss_dssp             ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-----SCBCCCSBCCSSCEEEE
T ss_pred             EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-----cceeEEEecccceEEee
Confidence            99999999999987655433333  34467899998 789999999999999999985     45667788999999999


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883          330 DSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH  408 (498)
Q Consensus       330 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (498)
                      +|+|++. +|++++.|+.|++||++........                               ....+|...      .
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-------------------------------~~~~~h~~~------v  299 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-------------------------------LYSLPHRHP------V  299 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-------------------------------SBCCBCSSC------E
T ss_pred             eecCCCceEEEEecCcceeeEEecccccccceE-------------------------------EEeeecccc------c
Confidence            9999876 7889999999999999875432211                               111223321      2


Q ss_pred             eccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCC------CeeeeEEcCCCCeEEEEe------------CCCc
Q 010883          409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS------PVRDCSWHPSQPMLVSSS------------WDGD  470 (498)
Q Consensus       409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~sp~~~~l~s~~------------~Dg~  470 (498)
                      .+++|+|+|++|++++.||.|+|||+.+++....+..|..      .+..+.|+|++.++++++            .++.
T Consensus       300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  379 (435)
T 4e54_B          300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT  379 (435)
T ss_dssp             EECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred             cceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence            3457889999999999999999999999988877766643      244567888888777764            2357


Q ss_pred             EEEecCCCCCC
Q 010883          471 VVRWEFPGNGE  481 (498)
Q Consensus       471 i~iw~~~~~~~  481 (498)
                      |++||..++..
T Consensus       380 i~iwd~~~g~~  390 (435)
T 4e54_B          380 IDVFDGNSGKM  390 (435)
T ss_dssp             EEEECSSSCCE
T ss_pred             EEEEECCCCcE
Confidence            99999887643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=259.35  Aligned_cols=250  Identities=19%  Similarity=0.277  Sum_probs=200.6

Q ss_pred             CCCceeEEEEEeCCCCCeEE-EEEC---CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---
Q 010883          173 KSLRWTVTDTSLSPDQRHLV-YASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---  245 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~-~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---  245 (498)
                      .+|...|.+++|+|++..++ +++.   |+.|++||+.+++.......               +|..+|.+++|+|+   
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~   79 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI---------------EKAKPIKCGTFGATSLQ   79 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE---------------EESSCEEEEECTTCCTT
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee---------------cccCcEEEEEEcCCCCC
Confidence            45888999999999996555 5555   89999999998775433322               25558999999998   


Q ss_pred             CCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeC-----CCCCEEEEeeCCCeEEEEcCccccCCCc-eeEE
Q 010883          246 GRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD-----ESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV  318 (498)
Q Consensus       246 g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~-----~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~  318 (498)
                      +++|++|+.||.|++||+.+++ .+..+..|...|.++.|.+     +++++|++++.||.|++||++    ... ++..
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~  155 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR----QKDDPVAN  155 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT----SCSSCSEE
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC----CCCCccee
Confidence            6999999999999999999988 8888899999999997642     678899999999999999998    443 5666


Q ss_pred             eccccc----cEEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883          319 LMGHLE----GITFID----SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ  390 (498)
Q Consensus       319 ~~~~~~----~v~~l~----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (498)
                      +..|..    .+.+++    |+|++++|++++.|+.|++||+++..                                  
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------------------------  201 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----------------------------------  201 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----------------------------------
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----------------------------------
Confidence            665554    788988    78899999999999999999998732                                  


Q ss_pred             eEEEEccCceeEEEEEEEeccccCC---CCcEEEEEecCCeEEEEECCCCcEEEEe-----ccCCCCeeeeEEcCCCC-e
Q 010883          391 SVATYKGHSVLRTLIRCHFSPVYST---GQKYIYTGSHDSCVYVYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQP-M  461 (498)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~-~  461 (498)
                      . .....+..  .+    .+++|+|   ++.+|++++.||.|++||+.+++.+..+     .+|...|++++|+|+++ +
T Consensus       202 ~-~~~~~~~~--~v----~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  274 (357)
T 3i2n_A          202 L-RWETNIKN--GV----CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL  274 (357)
T ss_dssp             E-EEEEECSS--CE----EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             e-eeecCCCC--ce----EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence            2 22222221  11    2336777   8999999999999999999887654443     38999999999999999 8


Q ss_pred             EEEEeCCCcEEEecCCCCCCC
Q 010883          462 LVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       462 l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      |++++.||.|++||+......
T Consensus       275 l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          275 FLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             EEEEETTSEEEEEEEECCSCC
T ss_pred             EEEEeCCCcEEEeecCCCccc
Confidence            999999999999999866543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=271.61  Aligned_cols=255  Identities=12%  Similarity=0.065  Sum_probs=200.3

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-----eEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      .|...|.+++|||||++||+++.||.|+||+.+.  .+..   .. |..     .|.+++|||||++|++|+.||+|+||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~---l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN---LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF  156 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE---CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee---cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            5688999999999999999999999999999654  2222   12 332     59999999999999999999999999


Q ss_pred             ECCCCceecc--ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEE-eccCC
Q 010883          204 DVGSGTMESL--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI-LAHTS  277 (498)
Q Consensus       204 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~---~~~~-~~~~~  277 (498)
                      |+.++.....  .......       ....+|...|.+++|+|||  +++++.|+.|++||+..++.   ...+ .+|..
T Consensus       157 d~~~~~l~~~~~i~l~ti~-------~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~  227 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIR-------LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR  227 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEE-------CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred             ECCCCccccccceeeeeee-------cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence            9988743110  0001000       0012577799999999999  88889999999999988774   3456 37889


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE--cCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS--RGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      .|.+++|+   ++.|++++ +++|++||+.    .........+|...|..++|  +|++..|++++.||+ ++|.... 
T Consensus       228 ~V~svaFs---g~~LASa~-~~tIkLWd~~----~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-  297 (588)
T 2j04_A          228 KITDLKIV---DYKVVLTC-PGYVHKIDLK----NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-  297 (588)
T ss_dssp             CCCCEEEE---TTEEEEEC-SSEEEEEETT----TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-
T ss_pred             cEEEEEEE---CCEEEEEe-CCeEEEEECC----CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-
Confidence            99999997   47888887 6999999996    44443444489999999999  999999999999999 9999752 


Q ss_pred             CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                                                                             ..++||+..+++.  |+++++|+..
T Consensus       298 -------------------------------------------------------~~~spd~~l~a~~--d~~v~lW~~~  320 (588)
T 2j04_A          298 -------------------------------------------------------LHVTADNIIAPYL--EKKFKKWSTI  320 (588)
T ss_dssp             -------------------------------------------------------EEEECCCSSHHHH--HHHHHHTTTT
T ss_pred             -------------------------------------------------------EEECCCceEEEEc--CCEEEEEECC
Confidence                                                                   1356688777664  9999999975


Q ss_pred             CCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC
Q 010883          436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW  467 (498)
Q Consensus       436 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~  467 (498)
                      .+. +..+.+ ...|.+++|+|||+.+|+++.
T Consensus       321 g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          321 WNE-FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             TTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             CCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            444 334443 667999999999999998863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.3e-32  Score=257.58  Aligned_cols=253  Identities=15%  Similarity=0.168  Sum_probs=202.7

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-EL  249 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l  249 (498)
                      ...+|...|++++|+|++++|++++.|+.|++|++.++..........             +|...|.+++|+|+++ +|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l   72 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-------------RYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-------------ECSSCEEEEEEEESSSEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-------------ecCCceEEEEECCCCCcEE
Confidence            345788899999999999999999999999999998765111111111             3556899999999999 99


Q ss_pred             EEEeCCCeEEEEEC-CCCeeeEEEec--cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC-----CceeEEecc
Q 010883          250 VAGSSDDCIYVYDL-EANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMG  321 (498)
Q Consensus       250 ~~g~~dg~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----~~~~~~~~~  321 (498)
                      ++|+.||.|++||+ .+++. ..+..  |...|.+++|+ + +.+|++++.|+.|++||++.....     .+++..+. 
T Consensus        73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-  148 (342)
T 1yfq_A           73 YVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-  148 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred             EEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence            99999999999999 87765 66778  99999999999 4 899999999999999999731000     44444555 


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883          322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV  400 (498)
Q Consensus       322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (498)
                      |...|.+++|+|++  +++++.|+.|++||++. ....                                .......+..
T Consensus       149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~--------------------------------~~~~~~~~~~  194 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN--------------------------------GTIEESGLKY  194 (342)
T ss_dssp             SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC--------------------------------CEEEECSCSS
T ss_pred             eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc--------------------------------ceeeecCCCC
Confidence            88999999999987  99999999999999987 3321                                1111112221


Q ss_pred             eEEEEEEEeccccCC-CCcEEEEEecCCeEEEEECCCC------cEEEEeccCCC---------CeeeeEEcCCCCeEEE
Q 010883          401 LRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSG------EQVAALKYHTS---------PVRDCSWHPSQPMLVS  464 (498)
Q Consensus       401 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~---------~v~~l~~sp~~~~l~s  464 (498)
                        .+    .+.+|+| +++++++++.||.|++|++...      +.+..+..|..         .|++++|+|++++|++
T Consensus       195 --~i----~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  268 (342)
T 1yfq_A          195 --QI----RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             --CE----EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             --ce----eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence              11    2336778 8999999999999999999887      77788887765         9999999999999999


Q ss_pred             EeCCCcEEEecCCCCC
Q 010883          465 SSWDGDVVRWEFPGNG  480 (498)
Q Consensus       465 ~~~Dg~i~iw~~~~~~  480 (498)
                      ++.||.|++||+..+.
T Consensus       269 ~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          269 AGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EETTSCEEEEETTTTE
T ss_pred             ecCCceEEEEcCccHh
Confidence            9999999999998664

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.4e-33  Score=263.78  Aligned_cols=250  Identities=14%  Similarity=0.133  Sum_probs=190.1

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEE-----------CCCeEEEEECCCCeE-EEEE-----eecCCCceeEEEEEeCCCC
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGF-----------QASQIRIYDVERGWK-IQKD-----ILAKSLRWTVTDTSLSPDQ  188 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~-----------~dg~i~vw~~~~~~~-~~~~-----~~~~~~~~~v~~~~~sp~~  188 (498)
                      .+.+|...|.+++++  ++.+++|.           .|+.+++|++..... +...     .....+...+.+++|+|||
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            466788888888764  55676654           477899999865421 1111     1122344568999999999


Q ss_pred             CeEEEEE--CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883          189 RHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       189 ~~l~~~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      ++|++++  .|++|+|||+.+++......                 |...|.+++|+|||++|++++.+ .+.+|+..++
T Consensus       146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~  207 (365)
T 4h5i_A          146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-----------------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG  207 (365)
T ss_dssp             SCEEEEESCSSCEEEEEETTTTEEEEEEE-----------------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred             CEEEEEECCCCCEEEEeECCCCcEEEEeC-----------------CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence            9987655  68999999999987654432                 33479999999999999999865 4777777777


Q ss_pred             eeeEE--EeccCCCeeEEEEeCCCCCEEEEeeCCC----eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEE
Q 010883          267 KLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS  340 (498)
Q Consensus       267 ~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  340 (498)
                      +.+..  ...|...|.+++|+ +++.++++++.|+    .+++|++............+.+|...|++++|+|||++||+
T Consensus       208 ~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las  286 (365)
T 4h5i_A          208 SCIARKTDFDKNWSLSKINFI-ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL  286 (365)
T ss_dssp             CEEEEECCCCTTEEEEEEEEE-ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred             cceeeeecCCCCCCEEEEEEc-CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence            65543  34688899999998 7889999998887    68889886322222234567789999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE-ccCceeEEEEEEEeccccCCCCcE
Q 010883          341 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKY  419 (498)
Q Consensus       341 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~  419 (498)
                      |+.|+.|+|||+++                                  .+.+..+ .+|....      .+++|||||++
T Consensus       287 gs~D~~V~iwd~~~----------------------------------~~~~~~~~~gH~~~V------~~v~fSpdg~~  326 (365)
T 4h5i_A          287 ASNDNSIALVKLKD----------------------------------LSMSKIFKQAHSFAI------TEVTISPDSTY  326 (365)
T ss_dssp             EETTSCEEEEETTT----------------------------------TEEEEEETTSSSSCE------EEEEECTTSCE
T ss_pred             EcCCCEEEEEECCC----------------------------------CcEEEEecCcccCCE------EEEEECCCCCE
Confidence            99999999999987                                  3556654 6777433      23377889999


Q ss_pred             EEEEecCCeEEEEECCC
Q 010883          420 IYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       420 l~~g~~dg~i~iwd~~~  436 (498)
                      |++|+.|++|+|||+..
T Consensus       327 laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          327 VASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEETTSEEEEEECCT
T ss_pred             EEEEeCCCeEEEEEcCC
Confidence            99999999999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.6e-31  Score=257.97  Aligned_cols=282  Identities=14%  Similarity=0.116  Sum_probs=223.9

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ..+.+++|+|++.++++++.++.|++||+.+++......  ...+|...|.+++|+|+++++++++.|+.|++||+.+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            456699999988888888889999999999886654322  234677799999999999999999999999999998876


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  288 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  288 (498)
                      ......                .|...+.+++|+|+++.+++++ .++.|++||+.+++.+..+.. ...+.+++|+ ++
T Consensus       203 ~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~  264 (433)
T 3bws_A          203 YKATVD----------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLS-KD  264 (433)
T ss_dssp             EEEEEE----------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEEC-TT
T ss_pred             EEEEEc----------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEc-CC
Confidence            654332                2444799999999999885554 799999999999988777654 4568999998 77


Q ss_pred             CCEEEEee--------CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCCCcc
Q 010883          289 GHLIYSGS--------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       289 ~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      ++++++++        .||.|++||++    .++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+.    
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~----  335 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMD----KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK----  335 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETT----TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECC----CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----
Confidence            88888887        58899999997    55555444 566789999999999755 56688999999999862    


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--------------
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------------  425 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------------  425 (498)
                                                    +.+..+.....   .    ..++|+|++++|++++.              
T Consensus       336 ------------------------------~~~~~~~~~~~---~----~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~  378 (433)
T 3bws_A          336 ------------------------------KVQKSIPVFDK---P----NTIALSPDGKYLYVSCRGPNHPTEGYLKKGL  378 (433)
T ss_dssp             ------------------------------EEEEEEECSSS---E----EEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred             ------------------------------cEEEEecCCCC---C----CeEEEcCCCCEEEEEecCCCccccccccccc
Confidence                                          33333332211   1    23467779999888876              


Q ss_pred             -CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC-CCcEEEecCCC
Q 010883          426 -DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-DGDVVRWEFPG  478 (498)
Q Consensus       426 -dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~-Dg~i~iw~~~~  478 (498)
                       ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus       379 ~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          379 VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence             57999999999999988875 457999999999999988875 99999999863

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.8e-31  Score=238.33  Aligned_cols=280  Identities=13%  Similarity=0.161  Sum_probs=191.3

Q ss_pred             eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC-eE-EEEEC--C
Q 010883          134 AYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IV-HIVDV--G  206 (498)
Q Consensus       134 v~~~~~s~dg~---~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~-~i-~iwd~--~  206 (498)
                      +.++.|-..|.   .++++++ ..|++|+..++.........+.|..+|..+.+.||..-|++..-.+ .+ .++.+  .
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            55666655543   5666765 5899999999855555556677777899999999765554432211 11 11111  1


Q ss_pred             CC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEEC-CCCeeeEEEeccCCCeeEE
Q 010883          207 SG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDL-EANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       207 ~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~  282 (498)
                      .. +........             .+|...|..+   ++++++.+++  .|+.|++|++ .+++.+..+..|...++.+
T Consensus       121 pd~~~~~~~l~s-------------~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l  184 (356)
T 2w18_A          121 SDDESEKQVLLK-------------SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL  184 (356)
T ss_dssp             -----CCEEEEE-------------EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE
T ss_pred             CCccccccEEEe-------------CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE
Confidence            11 000000000             1233345544   5666555533  5999999999 5588888888999999999


Q ss_pred             EEeC--CCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc---ccEEEEEEcCCCCEE------------EEEeCCC
Q 010883          283 CFGD--ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---EGITFIDSRGDGRYL------------ISNGKDQ  345 (498)
Q Consensus       283 ~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~l~~~~~~~~l------------~s~~~dg  345 (498)
                      +|++  .++.+|++++.|++|+|||+.    +++.+..+.+|.   ..+.+++|+|+|.++            ++|+.|+
T Consensus       185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~----TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          185 TFAEVQGMQEALLGTTIMNNIVIWNLK----TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             EEEEEETSTTEEEEEETTSEEEEEETT----TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred             EeeccCCCCceEEEecCCCcEEEEECC----CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence            9984  267999999999999999998    888889887654   367788999999876            5678899


Q ss_pred             cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE-----ccCceeEEEEEEEeccccCCCCcEE
Q 010883          346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-----KGHSVLRTLIRCHFSPVYSTGQKYI  420 (498)
Q Consensus       346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l  420 (498)
                      +|++||..+..                                  .+..+     .+|...  ....    .+  ++.++
T Consensus       261 tIklWd~~tgk----------------------------------~l~v~~~~~p~Gh~~~--~lsg----~~--sg~~l  298 (356)
T 2w18_A          261 QLIVINPKTTL----------------------------------SVGVMLYCLPPGQAGR--FLEG----DV--KDHCA  298 (356)
T ss_dssp             EEEEEETTTTE----------------------------------EEEEEEECCCTTCCCC--EEEE----EE--ETTEE
T ss_pred             EEEEEECCCCE----------------------------------EEEEEEeeccCCCcce--eEcc----cc--CCCEE
Confidence            99999998732                                  22221     233211  1111    11  36789


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeccCCCCee-eeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          421 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       421 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      ++|+.|++|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       299 ASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          299 AAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999999999999999999999987666 5899999999999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-31  Score=246.56  Aligned_cols=213  Identities=19%  Similarity=0.297  Sum_probs=171.8

Q ss_pred             CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCCCeEEEEcCc
Q 010883          231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~vwd~~  307 (498)
                      .+|...|.+++|+|+|++|++|+.|+.|++||+..  .+.+..+.+|.+.|.+++|+++ ++++|++|+.|++|++||++
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE   85 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence            36888999999999999999999999999999974  3667888999999999999754 48899999999999999997


Q ss_pred             cccCCCceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883          308 CLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK  385 (498)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (498)
                      ..  ....+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++.....                           
T Consensus        86 ~~--~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---------------------------  136 (297)
T 2pm7_B           86 NG--RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---------------------------  136 (297)
T ss_dssp             SS--CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---------------------------
T ss_pred             CC--ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---------------------------
Confidence            22  11355677889999999999997  899999999999999999863210                           


Q ss_pred             CCCCceEEEEccCceeEEEEEEEecccc---------CCCCcEEEEEecCCeEEEEECCCCc----EEEEeccCCCCeee
Q 010883          386 HPCDQSVATYKGHSVLRTLIRCHFSPVY---------STGQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHTSPVRD  452 (498)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------s~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~  452 (498)
                           ....+.+|..  .+..+.|+|..         .+++++|++|+.|+.|++||+.+++    ....+.+|...|.+
T Consensus       137 -----~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          137 -----SPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             -----CCEEEECCSS--CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             -----eeeeeecccC--ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence                 1123334432  22223333321         1136799999999999999998876    66788899999999


Q ss_pred             eEEcCCC---CeEEEEeCCCcEEEecCCCC
Q 010883          453 CSWHPSQ---PMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       453 l~~sp~~---~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      ++|+|++   .+|++++.|++|++||+...
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence            9999995   79999999999999998764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-31  Score=259.95  Aligned_cols=273  Identities=17%  Similarity=0.229  Sum_probs=208.2

Q ss_pred             cccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCC-------eEEEEEeecCCCceeEEEEEeCCCCC-eEEEEEC
Q 010883          126 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASM  196 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~  196 (498)
                      ....|.+.|++++|+|+ +.+||+++.||.|++|++.+.       ..........+|...|++++|+|++. +|++++.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            45679999999999997 789999999999999999761       00122233457778999999999998 9999999


Q ss_pred             CCeEEEEECCCCceeccc-cccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---eeeEE
Q 010883          197 SPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN---KLSLR  271 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~---~~~~~  271 (498)
                      ||.|++|++.++...... ...          ....+|...|.+++|+| ++.+|++++.||.|++||+.++   +.+..
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~----------~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  272 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAK----------NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT  272 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECS----------EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred             CCeEEEEeCCCCCCCCceeccc----------eeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence            999999999874321110 000          01125777899999999 7789999999999999999987   56777


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLW  350 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~dg~i~iw  350 (498)
                      +..|...|++++|+|....+|++|+.||.|++||++.   ...++..+..|...|.+++|+|+++ +|++++.|+.|++|
T Consensus       273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw  349 (430)
T 2xyi_A          273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW  349 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred             eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence            8899999999999955556899999999999999982   2467788889999999999999985 69999999999999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc-EEEEEecCCeE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCV  429 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i  429 (498)
                      |+...........                    ........+..+.+|...  +..+    +|+|++. +|++++.||.|
T Consensus       350 d~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~~~--v~~~----~~~p~~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          350 DLSKIGEEQSTED--------------------AEDGPPELLFIHGGHTAK--ISDF----SWNPNEPWIICSVSEDNIM  403 (430)
T ss_dssp             EGGGTTCCCCHHH--------------------HHHCCTTEEEECCCCSSC--EEEE----EECSSSTTEEEEEETTSEE
T ss_pred             eCCCCccccCccc--------------------cccCCcceEEEcCCCCCC--ceEE----EECCCCCCEEEEEECCCCE
Confidence            9987432111000                    000011445555566532  2222    5666888 99999999999


Q ss_pred             EEEECCCC
Q 010883          430 YVYDLVSG  437 (498)
Q Consensus       430 ~iwd~~~~  437 (498)
                      +||++...
T Consensus       404 ~iw~~~~~  411 (430)
T 2xyi_A          404 QVWQMAEN  411 (430)
T ss_dssp             EEEEECHH
T ss_pred             EEeEcccc
Confidence            99998653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.1e-29  Score=244.06  Aligned_cols=267  Identities=14%  Similarity=0.115  Sum_probs=211.5

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE-EEEECCCeEEEEECCCCceeccccccccccC
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      .++++++.|+.|++||+.+++.+....   .+. .+.+++|+|++++| ++++.|+.|++||+.+++........     
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~---~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-----   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIP---VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-----   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE---CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEee---cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-----
Confidence            467888899999999999986655432   233 58999999999987 56668999999999988765543321     


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE-EEeeCCCe
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDDNL  300 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~  300 (498)
                                  ..+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+ ++++.| ++++.|+.
T Consensus        74 ------------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           74 ------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS-PDGKKLYVTNNGDKT  139 (391)
T ss_dssp             ------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC-TTSSEEEEEETTTTE
T ss_pred             ------------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEEC-CCCCEEEEEeCCCCE
Confidence                        1799999999999886554 679999999999998777754 4578999998 667765 78888999


Q ss_pred             EEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCc
Q 010883          301 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP  379 (498)
Q Consensus       301 i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (498)
                      |++||+.    .++.+..+..+ ..+..++|+|++++| ++++.++.|++||+++.                        
T Consensus       140 v~~~d~~----~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------------  190 (391)
T 1l0q_A          140 VSVINTV----TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------------  190 (391)
T ss_dssp             EEEEETT----TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------------
T ss_pred             EEEEECC----CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------------
Confidence            9999997    66777776655 567999999999987 57778899999999873                        


Q ss_pred             CcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe---cCCeEEEEECCCCcEEEEeccCCCCeeeeEEc
Q 010883          380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH  456 (498)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s  456 (498)
                                ..+..+..+.   ..    ...+|+|++++|++++   .++.|++||+.+++.+..+..|. .+.+++|+
T Consensus       191 ----------~~~~~~~~~~---~~----~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s  252 (391)
T 1l0q_A          191 ----------SVIDTVKVEA---AP----SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT  252 (391)
T ss_dssp             ----------EEEEEEECSS---EE----EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC
T ss_pred             ----------eEEEEEecCC---Cc----cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEc
Confidence                      3333333322   11    2336777999999888   68999999999999998888765 57899999


Q ss_pred             CCCCeE-EEEeCCCcEEEecCCCCC
Q 010883          457 PSQPML-VSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       457 p~~~~l-~s~~~Dg~i~iw~~~~~~  480 (498)
                      |++++| ++++.|+.|++||+..+.
T Consensus       253 ~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          253 PDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCCc
Confidence            999977 677889999999998654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3e-30  Score=251.52  Aligned_cols=238  Identities=22%  Similarity=0.403  Sum_probs=202.1

Q ss_pred             CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883          173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG  252 (498)
Q Consensus       173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g  252 (498)
                      ..|...|.+++|  ++++|++|+.||.|++||+.+++......                +|...|.+++|  ++++|++|
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------~h~~~v~~l~~--~~~~l~sg  189 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT----------------GHTGSVLCLQY--DERVIITG  189 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC----------------CCSSCEEEEEC--CSSEEEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc----------------CCCCcEEEEEE--CCCEEEEE
Confidence            345567888877  89999999999999999999887654432                47779999999  78899999


Q ss_pred             eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          253 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                      +.||.|++||+.+++.+..+..|...|.+++|+   +.++++|+.||.|++||++... .......+.+|...|.+++| 
T Consensus       190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSS-CCEEEEEECCCSSCEEEEEE-
T ss_pred             cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCC-CceeeeEecCCCCcEEEEEe-
Confidence            999999999999999999999999999999996   4599999999999999997321 11223677889999999999 


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                       ++++|++++.||.|++||+++                                  ...+..+.+|.......  .+   
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~----------------------------------~~~~~~~~~~~~~v~~~--~~---  304 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTST----------------------------------CEFVRTLNGHKRGIACL--QY---  304 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTT----------------------------------CCEEEEEECCSSCEEEE--EE---
T ss_pred             -CCCEEEEEeCCCeEEEEECCc----------------------------------CcEEEEEcCCCCcEEEE--Ee---
Confidence             778999999999999999987                                  35566666666433222  22   


Q ss_pred             cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                         ++.++++|+.||.|++||+.+++++..+.+|...|.+++|  ++.+|++|+.||.|++||+....
T Consensus       305 ---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          305 ---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             ---ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             ---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence               4789999999999999999999999999999999999999  78899999999999999987654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.6e-30  Score=249.56  Aligned_cols=283  Identities=20%  Similarity=0.309  Sum_probs=190.9

Q ss_pred             cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC---CCeEEEEECCCeEEEE
Q 010883          128 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMSPIVHIV  203 (498)
Q Consensus       128 ~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~s~d~~i~iw  203 (498)
                      .+|...|.+++|+| ++++|++++.||.|++||+.++.......    +...+.++.|+|.   +.++++++.++.|++|
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC  171 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence            46999999999999 77899999999999999999986655432    3447899999984   4599999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe-eeEEE---------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK-LSLRI---------  272 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~-~~~~~---------  272 (498)
                      |+.+++......                +|...|.+++|+|+++ .|++|+.||.|++||+.++. ....+         
T Consensus       172 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  235 (408)
T 4a11_B          172 DLKSGSCSHILQ----------------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ  235 (408)
T ss_dssp             ESSSSCCCEEEC----------------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred             eCCCcceeeeec----------------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence            998876543322                4666899999999998 58999999999999998765 33333         


Q ss_pred             ------eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-----cccEEEEEEcCCCCEEEEE
Q 010883          273 ------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       273 ------~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~  341 (498)
                            ..|...|.+++|+ +++++|++++.||.|++||++    .+.....+..+     ...+........+..++++
T Consensus       236 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSS----NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV  310 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred             eeccccccccCceeEEEEc-CCCCEEEEecCCCeEEEEECC----CCccceeccccccccccccceeEEecCCCceEEEE
Confidence                  4788999999998 789999999999999999998    43333322221     1122222233345567777


Q ss_pred             eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883          342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  421 (498)
                      +.++.|++||+.+                                  +..+..+.+|.....      +.+|+|++++|+
T Consensus       311 ~~~~~i~v~d~~~----------------------------------~~~~~~~~~~~~~v~------~~~~s~~~~~l~  350 (408)
T 4a11_B          311 PYGSTIAVYTVYS----------------------------------GEQITMLKGHYKTVD------CCVFQSNFQELY  350 (408)
T ss_dssp             EETTEEEEEETTT----------------------------------CCEEEEECCCSSCEE------EEEEETTTTEEE
T ss_pred             ecCCEEEEEECcC----------------------------------CcceeeeccCCCeEE------EEEEcCCCCEEE
Confidence            8899999999987                                  466777777764322      235677999999


Q ss_pred             EEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC-CCCeEEEEeCCCcEEEecCCC
Q 010883          422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      +++.||.|++||+.+++.+.....+..   ...+.+ ....+.+++.|+.+++|+.+.
T Consensus       351 s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          351 SGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             EEETTSCEEEEEECC-------------------------------------------
T ss_pred             EECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCCcc
Confidence            999999999999999988766543322   223344 333566777899999998753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.3e-30  Score=251.40  Aligned_cols=247  Identities=18%  Similarity=0.243  Sum_probs=197.9

Q ss_pred             eEEEEEeCCCCCeEE-EEECCCeEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeC
Q 010883          178 TVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS  254 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~  254 (498)
                      ....++++|+...++ +++.||.|+||++...... ....             ...+|...|.+++|+| ++++|++|+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-------------~~~~h~~~V~~~~~~p~~~~~l~s~s~  102 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP-------------LVCGHTAPVLDIAWCPHNDNVIASGSE  102 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC-------------CBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc-------------eEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence            344578888776544 4788999999999654321 1111             1126888999999999 9999999999


Q ss_pred             CCeEEEEECCCC-------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe--cccccc
Q 010883          255 DDCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEG  325 (498)
Q Consensus       255 dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~  325 (498)
                      ||.|++||+.++       +.+..+.+|...|.+++|+|...++|++++.||.|++||++    .++.+..+  ..|...
T Consensus       103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~  178 (402)
T 2aq5_A          103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG----TGAAVLTLGPDVHPDT  178 (402)
T ss_dssp             TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT----TTEEEEEECTTTCCSC
T ss_pred             CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC----CCCccEEEecCCCCCc
Confidence            999999999987       56788889999999999984434799999999999999998    77888888  789999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE-ccCceeEEE
Q 010883          326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTL  404 (498)
Q Consensus       326 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  404 (498)
                      |.+++|+|++++|++++.|+.|++||+++.                                  ..+..+ ..|... ..
T Consensus       179 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------------------------------~~~~~~~~~~~~~-~~  223 (402)
T 2aq5_A          179 IYSVDWSRDGALICTSCRDKRVRVIEPRKG----------------------------------TVVAEKDRPHEGT-RP  223 (402)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEEETTTT----------------------------------EEEEEEECSSCSS-SC
T ss_pred             eEEEEECCCCCEEEEEecCCcEEEEeCCCC----------------------------------ceeeeeccCCCCC-cc
Confidence            999999999999999999999999999872                                  445555 444422 11


Q ss_pred             EEEEeccccCCCCcEEEEE---ecCCeEEEEECCCCcE-EEEec-cCCCCeeeeEEcCCCCeEEE-EeCCCcEEEecCCC
Q 010883          405 IRCHFSPVYSTGQKYIYTG---SHDSCVYVYDLVSGEQ-VAALK-YHTSPVRDCSWHPSQPMLVS-SSWDGDVVRWEFPG  478 (498)
Q Consensus       405 ~~~~~~~~~s~~~~~l~~g---~~dg~i~iwd~~~~~~-~~~~~-~h~~~v~~l~~sp~~~~l~s-~~~Dg~i~iw~~~~  478 (498)
                      ..    ..|+|++++|++|   +.|+.|++||+.+++. +.... .|...|.+++|+|++++|++ ++.||.|++|++..
T Consensus       224 ~~----~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          224 VH----AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             CE----EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             eE----EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            12    2466799999999   7899999999988654 22222 57788999999999998865 45799999999987


Q ss_pred             CC
Q 010883          479 NG  480 (498)
Q Consensus       479 ~~  480 (498)
                      +.
T Consensus       300 ~~  301 (402)
T 2aq5_A          300 EA  301 (402)
T ss_dssp             ST
T ss_pred             CC
Confidence            65

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=4.6e-29  Score=239.67  Aligned_cols=286  Identities=15%  Similarity=0.150  Sum_probs=216.2

Q ss_pred             cccCCCCceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV  203 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~l-a~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iw  203 (498)
                      .+..| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+.....   +. .+.+++|+|++++|++++ .++.|++|
T Consensus        27 ~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~~~~~~~~v~v~  101 (391)
T 1l0q_A           27 TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---GS-SPQGVAVSPDGKQVYVTNMASSTLSVI  101 (391)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---CC-CccceEECCCCCEEEEEECCCCEEEEE
Confidence            34444 458999999999977 5666899999999999866554322   22 799999999999886655 56999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      |+.+++.......                 ...+.+++|+|+++.| ++++.++.|++||+.+++.+..+..+ ..+.++
T Consensus       102 d~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A          102 DTTSNTVAGTVKT-----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI  163 (391)
T ss_dssp             ETTTTEEEEEEEC-----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred             ECCCCeEEEEEeC-----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence            9998876544331                 1268999999999977 67778999999999999988877655 457999


Q ss_pred             EEeCCCCCEE-EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCCCc
Q 010883          283 CFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSN  358 (498)
Q Consensus       283 ~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~  358 (498)
                      +|+ ++++.| ++++.++.|++||++    .++....+. +...+.+++|+|++++|++++   .++.|++||+++.   
T Consensus       164 ~~~-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---  234 (391)
T 1l0q_A          164 AVT-PDGTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---  234 (391)
T ss_dssp             EEC-TTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---
T ss_pred             EEC-CCCCEEEEEeCCCCEEEEEECC----CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---
Confidence            998 666665 678889999999997    556555554 556889999999999999888   6899999999872   


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEE-EEEecCCeEEEEECCCC
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHDSCVYVYDLVSG  437 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iwd~~~~  437 (498)
                                                     +.+..+..+...       ..++|+|++++| ++++.|+.|++||+.++
T Consensus       235 -------------------------------~~~~~~~~~~~~-------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          235 -------------------------------KITARIPVGPDP-------AGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             -------------------------------EEEEEEECCSSE-------EEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             -------------------------------eEEEEEecCCCc-------cEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence                                           344455444321       233677799877 56678999999999999


Q ss_pred             cEEEEeccCCCCee---eeE------------EcCCC----------CeEEEEeCCCcEEEecCCCCCC
Q 010883          438 EQVAALKYHTSPVR---DCS------------WHPSQ----------PMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       438 ~~~~~~~~h~~~v~---~l~------------~sp~~----------~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +.+..+..|..+..   .+.            |+.+.          -.+...+.|..+++|++..+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          277 TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS  345 (391)
T ss_dssp             EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred             cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence            99988876654421   112            22221          2456667789999999976653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.1e-30  Score=252.53  Aligned_cols=256  Identities=13%  Similarity=0.139  Sum_probs=197.6

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCc---eecccccccc-----------ccC---------------------
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT---MESLANVTEI-----------HDG---------------------  222 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~---~~~~~~~~~~-----------~~~---------------------  222 (498)
                      ++.+++|+|+|++|+++ .++.|++||+.+++   ..........           ...                     
T Consensus         6 p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            6 PLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             cEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            78899999999966655 57899999999887   3322221100           000                     


Q ss_pred             ------ccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeeeEEEe--ccCCCeeEEEEeCCCCCE
Q 010883          223 ------LDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE--ANKLSLRIL--AHTSDVNTVCFGDESGHL  291 (498)
Q Consensus       223 ------~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~  291 (498)
                            .........+|...|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+ +++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~  163 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTT  163 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSE
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCE
Confidence                  000001112466689999999999996 889999999999999  888877776  567899999998 78999


Q ss_pred             EEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883          292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY  368 (498)
Q Consensus       292 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  368 (498)
                      |++|+.+|.|++|++............+.+|...|++++|+|+   +++|++++.|+.|++||+++.             
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-------------  230 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-------------  230 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-------------
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-------------
Confidence            9999999999999997332111133467789999999999999   999999999999999999863             


Q ss_pred             cccceeecCCcCcccccCCCCceEEE-EccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc--
Q 010883          369 EWDYRWMDYPPQARDLKHPCDQSVAT-YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--  445 (498)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--  445 (498)
                                           ..+.. +.+|....      .+++|+ ++++|++++.|+.|++||+.+++++..+..  
T Consensus       231 ---------------------~~~~~~~~~h~~~v------~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  282 (450)
T 2vdu_B          231 ---------------------FIVDKWLFGHKHFV------SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS  282 (450)
T ss_dssp             ---------------------TCEEEECCCCSSCE------EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHH
T ss_pred             ---------------------ceeeeeecCCCCce------EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchh
Confidence                                 33333 33454322      233667 899999999999999999999998888762  


Q ss_pred             -----------------------CCCCeeeeEEcCCCCeEEEEe-CCCcEEEecC
Q 010883          446 -----------------------HTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEF  476 (498)
Q Consensus       446 -----------------------h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~  476 (498)
                                             +...|.+++|+|++++|++++ .|+.|++|++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                                   235789999999999999998 8999999999

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=8.2e-30  Score=242.41  Aligned_cols=252  Identities=18%  Similarity=0.209  Sum_probs=197.4

Q ss_pred             ecCCCceeEEEEEeCCC---CCeEEEEECCCeEEEEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCC
Q 010883          171 LAKSLRWTVTDTSLSPD---QRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG  246 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~---~~~l~~~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g  246 (498)
                      ...+|...|++++|+|+   +++|++++.||.|++||+.+ +.... ...              .+|...|.+++|+|++
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-~~~--------------~~h~~~v~~~~~~~~~   98 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-KAQ--------------QMHTGPVLDVCWSDDG   98 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-EEE--------------EECSSCEEEEEECTTS
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-EEe--------------ccccCCEEEEEECcCC
Confidence            55788889999999999   69999999999999999987 33221 111              1366689999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE--eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883          247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF--GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE  324 (498)
Q Consensus       247 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  324 (498)
                      ++|++++.||.|++||+.+++... +..|...|.+++|  + +++.+|++++.||.|++||++    ..+.+..+..+. 
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~-  171 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTR----SSNPMMVLQLPE-  171 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSS----CSSCSEEEECSS-
T ss_pred             CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECC----CCcEEEEEecCC-
Confidence            999999999999999999998765 5689999999999  5 778899999999999999998    667777777654 


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEE
Q 010883          325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRT  403 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  403 (498)
                      .+.++.+.+  ..+++++.++.+.+|+++....                                 ...... .......
T Consensus       172 ~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~  216 (368)
T 3mmy_A          172 RCYCADVIY--PMAVVATAERGLIVYQLENQPS---------------------------------EFRRIESPLKHQHR  216 (368)
T ss_dssp             CEEEEEEET--TEEEEEEGGGCEEEEECSSSCE---------------------------------EEEECCCSCSSCEE
T ss_pred             CceEEEecC--CeeEEEeCCCcEEEEEeccccc---------------------------------hhhhccccccCCCc
Confidence            666666664  4888999999999999986321                                 111111 1111122


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCCC---cEEEEeccCCC------------CeeeeEEcCCCCeEEEEeCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHTS------------PVRDCSWHPSQPMLVSSSWD  468 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~------------~v~~l~~sp~~~~l~s~~~D  468 (498)
                      .........+++  ..+++++.||.|++||+...   ..+..+..|..            +|++++|+|++++|++++.|
T Consensus       217 ~~~~~~~~~~~~--~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  294 (368)
T 3mmy_A          217 CVAIFKDKQNKP--TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD  294 (368)
T ss_dssp             EEEEEECTTSCE--EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred             eEEEcccCCCCC--CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC
Confidence            333333333322  33999999999999999887   55677777765            79999999999999999999


Q ss_pred             CcEEEecCCCCCC
Q 010883          469 GDVVRWEFPGNGE  481 (498)
Q Consensus       469 g~i~iw~~~~~~~  481 (498)
                      |.|++||+..+..
T Consensus       295 g~i~iwd~~~~~~  307 (368)
T 3mmy_A          295 GRFSFWDKDARTK  307 (368)
T ss_dssp             SCEEEEETTTTEE
T ss_pred             CeEEEEECCCCcE
Confidence            9999999987643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=4.9e-29  Score=232.20  Aligned_cols=248  Identities=18%  Similarity=0.244  Sum_probs=199.0

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      .+.+|...|++++|+|+|++||+|+.||+|++|++.+++.+...   .+|...+.++.  +++..+++++.++.+++|+.
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~---~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~  136 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---TSHSARVGSLS--WNSYILSSGSRSGHIHHHDV  136 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEE--EETTEEEEEETTSEEEEEET
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe---cCccceEEEee--cCCCEEEEEecCCceEeeec
Confidence            34678999999999999999999999999999999999766543   45666666554  56789999999999999998


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEEEeccCCCeeE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNT  281 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~  281 (498)
                      ..........               .+|...+.++.+++++++|++++.|+.|++||+.+++.    ......+.+.|.+
T Consensus       137 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  201 (318)
T 4ggc_A          137 RVAEHHVATL---------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA  201 (318)
T ss_dssp             TSSSCEEEEE---------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEE
T ss_pred             CCCceeEEEE---------------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEE
Confidence            7654321111               14666899999999999999999999999999987653    3455578889999


Q ss_pred             EEEeCCCCCEE--EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCCC
Q 010883          282 VCFGDESGHLI--YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSS  357 (498)
Q Consensus       282 ~~~~~~~~~~l--~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~  357 (498)
                      +.+++.+..++  ++++.++.|++||.+    ...... ...+...+..+.|+|++..+++++  .|+.|++||+++   
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~---  273 (318)
T 4ggc_A          202 VAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---  273 (318)
T ss_dssp             EEECTTSTTEEEEEECTTTCEEEEEETT----TCCEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---
T ss_pred             EEecCCCCcEEEEEecCCCCEEEEEecc----cccccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC---
Confidence            99986666665  456788999999986    444443 345778899999999999887655  799999999987   


Q ss_pred             ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883          358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG  437 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  437 (498)
                                                     ++.+..+.+|.....      +++|+|++++|++|+.||+|+|||+...
T Consensus       274 -------------------------------~~~~~~l~gH~~~V~------~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          274 -------------------------------MAKVAELKGHTSRVL------SLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             -------------------------------CCEEEEECCCSSCEE------EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             -------------------------------CcEEEEEcCCCCCEE------EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence                                           467788888874332      3367789999999999999999998765


Q ss_pred             c
Q 010883          438 E  438 (498)
Q Consensus       438 ~  438 (498)
                      .
T Consensus       317 d  317 (318)
T 4ggc_A          317 D  317 (318)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=9.8e-31  Score=243.40  Aligned_cols=216  Identities=14%  Similarity=0.169  Sum_probs=172.9

Q ss_pred             ccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeE
Q 010883          125 WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIV  200 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i  200 (498)
                      ..+.+|.++|++++|+|  ++++||+|+.|++|++||+.++.. .......+|...|.+++|+|+  +.+|++++.|+.|
T Consensus        51 ~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i  129 (316)
T 3bg1_A           51 ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI  129 (316)
T ss_dssp             EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred             EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence            45789999999999987  489999999999999999987631 112234578889999999998  7899999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-----------------CCEEEEEeCCCeEEEEEC
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----------------GRELVAGSSDDCIYVYDL  263 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----------------g~~l~~g~~dg~i~vwd~  263 (498)
                      ++|++.++.......             ...+|...|.+++|+|+                 +++|++|+.|+.|++||+
T Consensus       130 ~lwd~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          130 SLLTYTGEGQWEVKK-------------INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             EEEEECSSSCEEECC-------------BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred             EEEecCCCCCcceee-------------eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence            999998653211111             11246668999999997                 468999999999999999


Q ss_pred             CCC---eeeEEEeccCCCeeEEEEeCCC---CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883          264 EAN---KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       264 ~~~---~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                      ...   +....+.+|...|.+++|+|..   +.+|++++.||+|++||+............+..|...|.+++|+|++++
T Consensus       197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI  276 (316)
T ss_dssp             CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC
T ss_pred             CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE
Confidence            765   4566778999999999998432   3899999999999999987321111122345568899999999999999


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 010883          338 LISNGKDQAIKLWDIRK  354 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~  354 (498)
                      |++++.|+.|++|+...
T Consensus       277 las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          277 LAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEESSSCEEEEEECT
T ss_pred             EEEEcCCCeEEEEEECC
Confidence            99999999999999764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.2e-29  Score=238.17  Aligned_cols=263  Identities=13%  Similarity=0.096  Sum_probs=181.9

Q ss_pred             EEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceec
Q 010883          157 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG  236 (498)
Q Consensus       157 vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  236 (498)
                      ||++.+...+.   ....|...|++++|+||+++|++|+.++ ++||++.+++.......                  ..
T Consensus         3 i~s~~~~~~~~---~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~------------------~~   60 (355)
T 3vu4_A            3 LGSMITRNPIV---PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM------------------RH   60 (355)
T ss_dssp             -------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC------------------SC
T ss_pred             cccccccCCcc---ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec------------------CC
Confidence            45555543322   3356788999999999999999988775 78999887654322111                  13


Q ss_pred             EEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-c
Q 010883          237 IFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-K  314 (498)
Q Consensus       237 i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~  314 (498)
                      +..+++.++++.+ ++++.|+.|++||+.+++.+..+. +...|.+++|+ ++  .++++ .|+.|++||+.    .. +
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~-~~--~~~~~-~~~~i~i~d~~----~~~~  131 (355)
T 3vu4_A           61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLS-RE--FIVVS-YGDVISVFKFG----NPWK  131 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEEC-SS--EEEEE-ETTEEEEEESS----TTCC
T ss_pred             eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEc-CC--EEEEE-EcCEEEEEECC----CCce
Confidence            6677888888877 567778999999999999988875 77799999997 33  34444 47899999997    33 4


Q ss_pred             eeEEeccccccEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCce-
Q 010883          315 PAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-  391 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  391 (498)
                      .+..+..   +...+++++  .++++  |+.||.|++||+++..........                   .....-.+ 
T Consensus       132 ~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~p~  187 (355)
T 3vu4_A          132 RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG-------------------VQQKAILGK  187 (355)
T ss_dssp             BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------------C
T ss_pred             eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc-------------------ccccccCcc
Confidence            4444433   344556666  56665  688999999999874311100000                   00000012 


Q ss_pred             EEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe-EEEEECCCCcEEEEec-c-CCCCeeeeEEcCCCCeEEEEeCC
Q 010883          392 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALK-Y-HTSPVRDCSWHPSQPMLVSSSWD  468 (498)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~l~s~~~D  468 (498)
                      +..+.+|.....      +.+|+|+|++|++|+.|++ |++||+.+++++..+. + |...|++++|+|++++|++++.|
T Consensus       188 ~~~~~~h~~~v~------~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          188 GVLIKAHTNPIK------MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK  261 (355)
T ss_dssp             CEEECCCSSCEE------EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred             cEEEEccCCceE------EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence            566777764332      3367779999999999998 9999999999999998 5 99999999999999999999999


Q ss_pred             CcEEEecCCCCC
Q 010883          469 GDVVRWEFPGNG  480 (498)
Q Consensus       469 g~i~iw~~~~~~  480 (498)
                      ++|++||+....
T Consensus       262 ~~v~iw~~~~~~  273 (355)
T 3vu4_A          262 WTLHVFEIFNDQ  273 (355)
T ss_dssp             CEEEEEESSCCS
T ss_pred             CEEEEEEccCCC
Confidence            999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.7e-30  Score=248.00  Aligned_cols=247  Identities=11%  Similarity=0.041  Sum_probs=168.3

Q ss_pred             ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--EeecCCCceeEEEEEeCC--------CCCeEEEEEC
Q 010883          127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DILAKSLRWTVTDTSLSP--------DQRHLVYASM  196 (498)
Q Consensus       127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~v~~~~~sp--------~~~~l~~~s~  196 (498)
                      ...|...+....+++++.+||+|+.|++|+|||+.++.....  .....+|...|++++|+|        |+++||+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            345666677777888899999999999999999998855433  234678999999999998        8899999999


Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEE----
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLR----  271 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~----  271 (498)
                      |++|+|||+.++.......                +|..+|.+++|+|++. +|++|+.|+.|++||+.+++....    
T Consensus       165 D~tv~~Wd~~~~~~~~~~~----------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~  228 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGY----------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT  228 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEE----------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred             CCeEEEEECCCCceeeeec----------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence            9999999997765432221                3555899999999874 799999999999999988754322    


Q ss_pred             ---------------------EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          272 ---------------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       272 ---------------------~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                                           ..+|...+.++.|+++++..|++++.|+++++||+.    .......+..|...+..+.
T Consensus       229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~  304 (393)
T 4gq1_A          229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKN  304 (393)
T ss_dssp             --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------C
T ss_pred             CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEE
Confidence                                 235778899999988899999999999999999997    4444444444444333332


Q ss_pred             ------------------EcC--CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883          331 ------------------SRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ  390 (498)
Q Consensus       331 ------------------~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (498)
                                        ++|  ++.++++|+.||.|++||+.+..                                  
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~----------------------------------  350 (393)
T 4gq1_A          305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD----------------------------------  350 (393)
T ss_dssp             CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT----------------------------------
T ss_pred             EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc----------------------------------
Confidence                              222  34466788899999999998742                                  


Q ss_pred             eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883          391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL  434 (498)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~  434 (498)
                      .+.....|..  .    ..+++|+|||++||+++.+| +.+|.+
T Consensus       351 ~~~~~~~~~~--~----V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          351 SNSIPIQLGM--P----IVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CCEEEEECSS--C----EEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEEecCCCC--c----EEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            3333333332  1    23447788999999998776 666654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.8e-30  Score=241.28  Aligned_cols=234  Identities=8%  Similarity=0.012  Sum_probs=180.2

Q ss_pred             EEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883          182 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY  261 (498)
Q Consensus       182 ~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw  261 (498)
                      ..+.+++++|++|+.||.|++||+.+++......                  ...|.++.|+|+   +++++.|+.|++|
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------~~~v~~~~~~~~---~~s~s~D~~i~~w  100 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------------------TPNPRTGGEHPA---IISRGPCNRLLLL  100 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------------------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------------------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence            4456788999999999999999999887654433                  115777788887   9999999999999


Q ss_pred             ECC---------CCeeeEEEe-ccCCCeeEEEEeCC--CCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEE
Q 010883          262 DLE---------ANKLSLRIL-AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF  328 (498)
Q Consensus       262 d~~---------~~~~~~~~~-~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~  328 (498)
                      +..         +++.+..+. .|...|.+++|+ +  ++++|++++.||+|++||++    .+....... .|...|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~----~~~~~~~~~~~~~~~i~~  175 (343)
T 3lrv_A          101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYE----DDSQYIVHSAKSDVEYSS  175 (343)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESS----SSCEEEEECCCSSCCCCE
T ss_pred             EccCceEEeecCCcceeEEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECC----CCcEEEEEecCCCCceEE
Confidence            665         445444444 677899999998 6  88999999999999999998    666655553 45558999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEE
Q 010883          329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRC  407 (498)
Q Consensus       329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  407 (498)
                      ++|+|++.+|++|+.||.|++||+++....                                 ...+.. |...  +   
T Consensus       176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~---------------------------------~~~~~~~h~~~--v---  217 (343)
T 3lrv_A          176 GVLHKDSLLLALYSPDGILDVYNLSSPDQA---------------------------------SSRFPVDEEAK--I---  217 (343)
T ss_dssp             EEECTTSCEEEEECTTSCEEEEESSCTTSC---------------------------------CEECCCCTTSC--E---
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCCCCCC---------------------------------ccEEeccCCCC--E---
Confidence            999999999999999999999999984321                                 134444 4422  2   


Q ss_pred             EeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc---CCCCee--eeEEcCCCCeEEEEeC-CCcEEEecCCCCCC
Q 010883          408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSPVR--DCSWHPSQPMLVSSSW-DGDVVRWEFPGNGE  481 (498)
Q Consensus       408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~l~~sp~~~~l~s~~~-Dg~i~iw~~~~~~~  481 (498)
                       .+.+|+|++.+|++++ |+.|++||+++++.+..+..   |...+.  +++|+|++++|++++. |+.|++|++.....
T Consensus       218 -~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          218 -KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             -EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             -EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence             2336677999999999 55999999999877655543   445555  5999999999999998 99999999976543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.2e-28  Score=240.18  Aligned_cols=287  Identities=12%  Similarity=0.043  Sum_probs=214.2

Q ss_pred             CCceEEEE---EcCCCCEEEEEE--------------CCCeEEEEECC--CC--eEEEEEeecCCCceeEEEEEeCCCCC
Q 010883          131 TSRAYVSQ---FSADGSLFVAGF--------------QASQIRIYDVE--RG--WKIQKDILAKSLRWTVTDTSLSPDQR  189 (498)
Q Consensus       131 ~~~v~~~~---~s~dg~~la~~~--------------~dg~i~vw~~~--~~--~~~~~~~~~~~~~~~v~~~~~sp~~~  189 (498)
                      ...++.++   |+|+++.++..+              .++.+.||.++  ++  ..+...   ..+ ..+.+++|+|++.
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~-~~~~~~~~s~~~~  135 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF---KTG-FQPKSVRFIDNTR  135 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE---ECS-SCBCCCEESSSSE
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE---cCC-CCceEEEEeCCCe
Confidence            44567777   777776665432              23323455443  34  222221   122 2466899999777


Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS  269 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  269 (498)
                      ++++++.++.|++||+.+++..........           .+|...|.+++|+++++++++++.|+.|++||+.+++.+
T Consensus       136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~  204 (433)
T 3bws_A          136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKY-----------KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK  204 (433)
T ss_dssp             EEEEBTTSSSEEEEETTTCCEEEECCCHHH-----------HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred             EEEEeCCCCeEEEEECCCCeEeeecCcccc-----------cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence            888888889999999998876543322111           146668999999999999999999999999999999998


Q ss_pred             EEEeccCCCeeEEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe------
Q 010883          270 LRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG------  342 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~------  342 (498)
                      ..+..|...+.+++|+ +++..+ ++++.|+.|++||++    .++.+..+..+ ..+.+++|+|++++|++++      
T Consensus       205 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~----~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          205 ATVDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRK----TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQ  278 (433)
T ss_dssp             EEEECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTT
T ss_pred             EEEcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECC----CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCcc
Confidence            8888899999999998 666666 556689999999997    66666666654 5689999999999999888      


Q ss_pred             --CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEE
Q 010883          343 --KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI  420 (498)
Q Consensus       343 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  420 (498)
                        .|+.|++||+++.                                  +.+..+ .+.      .....++|+|+++.+
T Consensus       279 ~~~dg~i~~~d~~~~----------------------------------~~~~~~-~~~------~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          279 ESGGGRLGIYSMDKE----------------------------------KLIDTI-GPP------GNKRHIVSGNTENKI  317 (433)
T ss_dssp             CSCCEEEEEEETTTT----------------------------------EEEEEE-EEE------ECEEEEEECSSTTEE
T ss_pred             ccCCCeEEEEECCCC----------------------------------cEEeec-cCC------CCcceEEECCCCCEE
Confidence              4889999999863                                  222222 111      112234677788655


Q ss_pred             -EEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC---------------CCcEEEecCCCCC
Q 010883          421 -YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW---------------DGDVVRWEFPGNG  480 (498)
Q Consensus       421 -~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~---------------Dg~i~iw~~~~~~  480 (498)
                       ++++.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++.               ||.|++||+.++.
T Consensus       318 ~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          318 YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             EEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence             666889999999999999888876 6788999999999998888876               5799999997654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.5e-28  Score=230.17  Aligned_cols=228  Identities=13%  Similarity=0.134  Sum_probs=185.2

Q ss_pred             ccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeE------EEEEeecCCCceeEEEEEeCCC--CCeEEEE
Q 010883          125 WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLRWTVTDTSLSPD--QRHLVYA  194 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~  194 (498)
                      ..+.+|...|++++|+|  |+++|++|+.||.|++||+.++..      .........|...|.+++|+|+  +++|+++
T Consensus        51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  130 (351)
T 3f3f_A           51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL  130 (351)
T ss_dssp             EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe
Confidence            45578999999999999  699999999999999999987621      1223344577889999999999  9999999


Q ss_pred             ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCee--e
Q 010883          195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANKL--S  269 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~dg~i~vwd~~~~~~--~  269 (498)
                      +.|+.|++||+.+++...............   ....+|...+.+++|+|+   +..|++++.++.+.+|+...++.  +
T Consensus       131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          131 GNDGILRLYDALEPSDLRSWTLTSEMKVLS---IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             ETTCEEEEEECSSTTCTTCCEEEEEEESCS---CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             cCCCcEEEecCCChHHhccccccccccccc---cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            999999999999887655444332222111   122356778999999997   89999999999998888887765  5


Q ss_pred             EEEeccCCCeeEEEEeCCCC----CEEEEeeCCCeEEEEcCccccC----------------------------------
Q 010883          270 LRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNV----------------------------------  311 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~----~~l~s~s~dg~i~vwd~~~~~~----------------------------------  311 (498)
                      ..+.+|...|++++|+ +++    ++|++|+.||.|++||++....                                  
T Consensus       208 ~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE  286 (351)
T ss_dssp             EECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence            6677899999999998 555    7999999999999999973210                                  


Q ss_pred             --------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          312 --------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       312 --------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                              ....+..+.+|...|++++|+|++++|++++.||.|++||+....
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence                    125667788899999999999999999999999999999998743

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=6.8e-28  Score=232.60  Aligned_cols=283  Identities=14%  Similarity=0.083  Sum_probs=210.0

Q ss_pred             CCceEEEEEcCCCC-EEEEEE----CCC----eEEEEEC--CCCeEEEEEeecCCCceeEEEEEeCC-------------
Q 010883          131 TSRAYVSQFSADGS-LFVAGF----QAS----QIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP-------------  186 (498)
Q Consensus       131 ~~~v~~~~~s~dg~-~la~~~----~dg----~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~sp-------------  186 (498)
                      ...+...+|++.|. ++++|+    .||    .|++||+  .+++.+... ...+|...+..+++++             
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-SYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-EEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-EEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            35788888999884 666776    467    8999999  888655332 2234555566666654             


Q ss_pred             -CCCeEEEEECC------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---
Q 010883          187 -DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---  256 (498)
Q Consensus       187 -~~~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg---  256 (498)
                       .+..+++++.+      +.|++||+.++....+.                 +|...+.+++|+|||+.|++++.++   
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~-----------------~~~~~v~~~~~Spdg~~la~~s~~~~~~  203 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH-----------------RSPQPLMSPAWSPDGSKLAYVTFESGRS  203 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE-----------------EESSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEe-----------------CCCCcceeeEEcCCCCEEEEEEecCCCc
Confidence             25667766654      79999999764432221                 2445899999999999999999875   


Q ss_pred             eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCCe--EEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      .|++||+.+++.. .+..|...+.+++|+ |+++.|+ +++.++.  |++||+.    .++ ...+..|...+.+++|+|
T Consensus       204 ~i~~~d~~tg~~~-~l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~sp  276 (415)
T 2hqs_A          204 ALVIQTLANGAVR-QVASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFP  276 (415)
T ss_dssp             EEEEEETTTCCEE-EEECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----TCC-EEECCCCSSCEEEEEECT
T ss_pred             EEEEEECCCCcEE-EeecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECC----CCC-EEeCcCCCCcccceEECC
Confidence            9999999998874 566888899999998 7787666 6666654  9999986    443 467778888999999999


Q ss_pred             CCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          334 DGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       334 ~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      ||++|++++. ++  .|.+||+.+..                                   ...+..+..      ....
T Consensus       277 dg~~l~~~s~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~~------~~~~  315 (415)
T 2hqs_A          277 DSQNLAFTSDQAGRPQVYKVNINGGA-----------------------------------PQRITWEGS------QNQD  315 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTSSC-----------------------------------CEECCCSSS------EEEE
T ss_pred             CCCEEEEEECCCCCcEEEEEECCCCC-----------------------------------EEEEecCCC------cccC
Confidence            9999998876 44  57777887632                                   111112211      1234


Q ss_pred             cccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC---cEEEecCCCCCC
Q 010883          411 PVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPGNGE  481 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg---~i~iw~~~~~~~  481 (498)
                      ++|+|||++|++++.+   ..|++||+.+++.. .+..|. .+.+++|+|+|++|++++.|+   .|++||+.+...
T Consensus       316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             eEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence            5778899999988875   58999999988874 455554 899999999999999888877   799999876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-28  Score=255.93  Aligned_cols=216  Identities=16%  Similarity=0.217  Sum_probs=180.1

Q ss_pred             CccccCCCCceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCe
Q 010883          124 PWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPI  199 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~  199 (498)
                      ...+.+|.++|++++|+|+  +++|++|+.||.|++||+.++.. ........|...|++++|+|+  ++++++++.||.
T Consensus        46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  124 (753)
T 3jro_A           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK  124 (753)
T ss_dssp             EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence            4567889999999999998  99999999999999999998742 233345678889999999999  999999999999


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCC
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-------------DGRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-------------~g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      |++||+.++........              .+|...|.+++|+|             ++.+|++|+.||.|++||+.++
T Consensus       125 I~vwdl~~~~~~~~~~~--------------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          125 VSVVEFKENGTTSPIII--------------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             EEEEECCSSSCCCCEEE--------------ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             EEEEEeecCCCcceeEe--------------ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence            99999988744322221              14666899999999             5899999999999999999877


Q ss_pred             ----eeeEEEeccCCCeeEEEEeCCC---CCEEEEeeCCCeEEEEcCccccCC-CceeEEeccccccEEEEEEcCCCCEE
Q 010883          267 ----KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYL  338 (498)
Q Consensus       267 ----~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l  338 (498)
                          .....+.+|...|.+++|+ ++   +.+|++|+.||.|++||++..... .........|...|++++|+|++++|
T Consensus       191 ~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  269 (753)
T 3jro_A          191 AQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL  269 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE
T ss_pred             cccceeeeeecCCCCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE
Confidence                5556777899999999998 55   899999999999999999733111 11333445688899999999999999


Q ss_pred             EEEeCCCcEEEEeCCCC
Q 010883          339 ISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       339 ~s~~~dg~i~iwd~~~~  355 (498)
                      ++++.||.|++||++..
T Consensus       270 ~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          270 ALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEECSSSCEECCBCCSS
T ss_pred             EEEcCCCEEEEEecCCC
Confidence            99999999999999863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=6e-27  Score=232.80  Aligned_cols=278  Identities=14%  Similarity=0.086  Sum_probs=215.9

Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC--CCCceecccc
Q 010883          138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV--GSGTMESLAN  215 (498)
Q Consensus       138 ~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~--~~~~~~~~~~  215 (498)
                      +|+|++.++++++.|++|.+||..+++.+..+..  ++  .+..++|+||+++|++++.|+.|.+||+  .+++......
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            3889999999999999999999999877655432  33  2889999999999999999999999999  6666543322


Q ss_pred             ccccccCccccccCCCCceecEEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCeeeEEEec----------cC-CCe
Q 010883          216 VTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HT-SDV  279 (498)
Q Consensus       216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~----~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~----------~~-~~v  279 (498)
                      .                 ...+..++|+|    ||++|++++. +++|.+||..+++++..+..          |. ..+
T Consensus       220 ~-----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          220 I-----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             C-----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             c-----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence            1                 12578999999    9999999884 89999999999998888764          22 378


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE--EeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMS  356 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~  356 (498)
                      ..+.+++.++.++++...++.|.+||+.    ..+.+.  .+ .+...+..+.|+|++++|++++ .+++|.+||+.+. 
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~----~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-  356 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYK----DIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-  356 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECT----TSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEec----CCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-
Confidence            8999986677788888899999999997    322222  33 3556678899999999876554 5889999999873 


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEcc----CceeEEEEEEEeccccCCC-CcEEEEEe-cCCeEE
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG----HSVLRTLIRCHFSPVYSTG-QKYIYTGS-HDSCVY  430 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~-~~~l~~g~-~dg~i~  430 (498)
                                                       +.+..+..    |...  ...  +   ++|+ +.+++++. .|++|.
T Consensus       357 ---------------------------------~l~~~i~~g~~ph~g~--g~~--~---~~p~~g~~~~s~~~~d~~V~  396 (543)
T 1nir_A          357 ---------------------------------RLSALVDVGKTPHPGR--GAN--F---VHPKYGPVWSTSHLGDGSIS  396 (543)
T ss_dssp             ---------------------------------EEEEEEECSSSBCCTT--CEE--E---EETTTEEEEEEEBSSSSEEE
T ss_pred             ---------------------------------eEEEeeccCCCCCCCC--Ccc--c---CCCCCccEEEeccCCCceEE
Confidence                                             33444432    2110  011  1   2345 66666665 589999


Q ss_pred             EEECCC-------CcEEEEeccCCCCeeeeEEcCCCCeEEEEe-------CCCcEEEecCCCCCCC
Q 010883          431 VYDLVS-------GEQVAALKYHTSPVRDCSWHPSQPMLVSSS-------WDGDVVRWEFPGNGEA  482 (498)
Q Consensus       431 iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~-------~Dg~i~iw~~~~~~~~  482 (498)
                      +||+.+       .+++.++..|.+.+..++++|++++|++++       .+++|.+||+.+.+..
T Consensus       397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            999998       899999999998899999999999999987       3789999999988754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2e-27  Score=214.82  Aligned_cols=199  Identities=13%  Similarity=0.092  Sum_probs=143.8

Q ss_pred             CCceEEEEEcCC----CCEEEEEEC--------------------CCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeC
Q 010883          131 TSRAYVSQFSAD----GSLFVAGFQ--------------------ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLS  185 (498)
Q Consensus       131 ~~~v~~~~~s~d----g~~la~~~~--------------------dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~s  185 (498)
                      ...|.+++|+||    ++++++++.                    |+.|++|++.. |+.+...   ..|...++.++|+
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~---~~~~~~v~~l~fs  187 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ---FLMPPEETILTFA  187 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE---EECCCSSCEEEEE
T ss_pred             ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee---ccCCCceeeEEee
Confidence            446788888889    888888664                    56666666633 3322221   1333355566666


Q ss_pred             C---CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE------------E
Q 010883          186 P---DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL------------V  250 (498)
Q Consensus       186 p---~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l------------~  250 (498)
                      |   ++.+|++++.|++|+|||+.+++....+....             .+...+.+++|+|+|.++            +
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~la  254 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD-------------SYQASVCHKAYSEMGLLFIVLSHPCAKESES  254 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----------------CCCEEEEEEETTEEEEEEC---------
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC-------------cceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence            6   56789999999999999999998766543111             122368888999999876            5


Q ss_pred             EEeCCCeEEEEECCCCeeeEEE-----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc
Q 010883          251 AGSSDDCIYVYDLEANKLSLRI-----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG  325 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  325 (498)
                      +|+.|++|++||..+++.+..+     .+|...+.+..++   +.++++++.|++|+|||+.    .++.+.++.+|...
T Consensus       255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~----tGk~l~tL~gH~~~  327 (356)
T 2w18_A          255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLL----LGQCTALLPPVSDQ  327 (356)
T ss_dssp             ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETT----TCSEEEEECCC--C
T ss_pred             ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECC----CCcEEEEecCCCCC
Confidence            6788999999999999887655     2566555555553   7789999999999999998    88999999999876


Q ss_pred             EE-EEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          326 IT-FIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       326 v~-~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      +. .++|+|||++|++|+.|++|+|||+
T Consensus       328 vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            55 5899999999999999999999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1.9e-26  Score=240.18  Aligned_cols=286  Identities=13%  Similarity=0.073  Sum_probs=209.2

Q ss_pred             CCceEEEEEcCCCCEEEEEEC-CC-----eEEEEECCCCeEEEEEeecCCCc----------------------eeEEEE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQ-AS-----QIRIYDVERGWKIQKDILAKSLR----------------------WTVTDT  182 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v~~~  182 (498)
                      ...|.+++|||||++|++++. |+     .|++||+.+++..... ....+.                      ..|.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence            457999999999999999998 88     8999999988554332 222222                      348899


Q ss_pred             EeCCCCCeEEEEECCCeEEEEECCCC---ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 010883          183 SLSPDQRHLVYASMSPIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY  259 (498)
Q Consensus       183 ~~sp~~~~l~~~s~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~  259 (498)
                      +|+|||++|++++. +.|++||+.++   ....+.                 .|...+.+++|+|||++|++++ ++.|+
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-----------------~~~~~~~~~~~SPDG~~la~~~-~~~i~  175 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-----------------HGEGFATDAKLSPKGGFVSFIR-GRNLW  175 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-----------------CSSSCEEEEEECTTSSEEEEEE-TTEEE
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-----------------cCCcccccccCCCCCCEEEEEe-CCcEE
Confidence            99999999999986 89999999887   432221                 2334799999999999999987 46899


Q ss_pred             EEECCCCeeeEEEeccCCC----------------eeEEEEeCCCCCEEEEeeCCC------------------------
Q 010883          260 VYDLEANKLSLRILAHTSD----------------VNTVCFGDESGHLIYSGSDDN------------------------  299 (498)
Q Consensus       260 vwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~s~dg------------------------  299 (498)
                      +||+.+++.......+...                +..++|+ +++++|++++.|+                        
T Consensus       176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             EEecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence            9999988765443333322                4789998 7888888887665                        


Q ss_pred             ---------eEEEEcCccccCC-CceeEEec--cccccEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCCCccccc
Q 010883          300 ---------LCKVWDRRCLNVK-GKPAGVLM--GHLEGITFIDSRGDGRYLISNGK-----DQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       300 ---------~i~vwd~~~~~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~  362 (498)
                               .|.+||+.    . ++......  .|...+..++| |||++|++++.     +..|++||+.+..      
T Consensus       255 ~~g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------  323 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPA----EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------  323 (741)
T ss_dssp             BTTSCCCEEEEEEECSS----TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------
T ss_pred             CCCCCCCeeEEEEEECC----CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------
Confidence                     78899986    4 44333332  47778999999 99999987654     5679999998732      


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC-CCcEEE
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVA  441 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~  441 (498)
                                                  ....+..+..  ........+.|+|||+++++++.||.++||.+. .+. ..
T Consensus       324 ----------------------------~~~~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~  372 (741)
T 2ecf_A          324 ----------------------------QRVLAHETSP--TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA  372 (741)
T ss_dssp             ----------------------------EEEEEEEECS--SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred             ----------------------------eEEEEEcCCC--CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence                                        2222221110  000011356788999999999999987777665 455 77


Q ss_pred             EeccCCCCeeee-EEcCCCCeEE-EEeCCC--cEEEecCCCC
Q 010883          442 ALKYHTSPVRDC-SWHPSQPMLV-SSSWDG--DVVRWEFPGN  479 (498)
Q Consensus       442 ~~~~h~~~v~~l-~~sp~~~~l~-s~~~Dg--~i~iw~~~~~  479 (498)
                      .+..|...|..+ .|+|+++.|+ +++.|+  .+++|++...
T Consensus       373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~  414 (741)
T 2ecf_A          373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ  414 (741)
T ss_dssp             ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred             eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence            888888888887 5999999765 455555  8999998653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.8e-25  Score=215.61  Aligned_cols=264  Identities=16%  Similarity=0.150  Sum_probs=199.6

Q ss_pred             cccCCCCceEEEEEcC--------------CCCEEEEEECC------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeC
Q 010883          126 PVDQTTSRAYVSQFSA--------------DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  185 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~--------------dg~~la~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s  185 (498)
                      .+.+|...+..+++++              .+..++.++.+      +.|++||++.+. ...+   ..|...|.+++|+
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l---~~~~~~v~~~~~S  187 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV---HRSPQPLMSPAWS  187 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE---EEESSCEEEEEEC
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE---eCCCCcceeeEEc
Confidence            3567777777777765              26667766654      799999998542 2222   2355689999999


Q ss_pred             CCCCeEEEEECCC---eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCC--eEE
Q 010883          186 PDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDD--CIY  259 (498)
Q Consensus       186 p~~~~l~~~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg--~i~  259 (498)
                      |||++|++++.++   .|++||+.+++...+..                 |...+.+++|+|||+.|+ +++.++  .|+
T Consensus       188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-----------------~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          188 PDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-----------------CSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-----------------CCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            9999999999875   99999999887643221                 334799999999999888 555554  499


Q ss_pred             EEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-CC--eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC
Q 010883          260 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR  336 (498)
Q Consensus       260 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  336 (498)
                      +||+.+++. ..+..|...+.+++|+ ++++.|++++. ++  .|.+||+.    .+. ...+..+...+..++|+|+|+
T Consensus       251 ~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          251 VMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNIN----GGA-PQRITWEGSQNQDADVSSDGK  323 (415)
T ss_dssp             EEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----SSC-CEECCCSSSEEEEEEECTTSS
T ss_pred             EEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECC----CCC-EEEEecCCCcccCeEECCCCC
Confidence            999998876 5677888999999998 78888887776 45  67777875    333 445556777899999999999


Q ss_pred             EEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          337 YLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       337 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      +|++++.+   ..|++||+.+..                                   ...+..+.       ....++|
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~-------~~~~~~~  361 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGG-----------------------------------VQVLSSTF-------LDETPSL  361 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCC-----------------------------------EEECCCSS-------SCEEEEE
T ss_pred             EEEEEECcCCceEEEEEECCCCC-----------------------------------EEEecCCC-------CcCCeEE
Confidence            99988764   589999998732                                   22222222       1234578


Q ss_pred             CCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC
Q 010883          414 STGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP  460 (498)
Q Consensus       414 s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~  460 (498)
                      +|||++|++++.++   .|++||+. +.....+..|.+.|.+++|+|.-.
T Consensus       362 spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          362 APNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             cCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            88999999988877   89999986 556778889999999999999754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.6e-24  Score=215.45  Aligned_cols=299  Identities=12%  Similarity=0.066  Sum_probs=217.8

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeEEEEEeecCCCceeEEEEEeCC----CCCeEEEEEC-CCeEEEEECC
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP----DQRHLVYASM-SPIVHIVDVG  206 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~s~-d~~i~iwd~~  206 (498)
                      +.+++|+|||++|++++.|+.|++||+  .+++.+..+.    +...+..++|+|    ||++|++++. +++|.+||..
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            899999999999999999999999999  7776555433    223689999999    9999999885 8999999999


Q ss_pred             CCceeccccccccccCccccccCCCCce-ecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeE--EEeccCCCeeEE
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTV  282 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~  282 (498)
                      +++............      ....-|. ..+.++.++|++.. +++...++.|.+||+.+.+.+.  .+ .+...+.++
T Consensus       257 t~~~~~~i~~~g~~~------~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~  329 (543)
T 1nir_A          257 TLEPKQIVSTRGMTV------DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDG  329 (543)
T ss_dssp             TCCEEEEEECCEECS------SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCE
T ss_pred             ccccceeecccCccc------CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCc
Confidence            887765544321000      0000022 26889999997765 5566678999999998866543  33 466778899


Q ss_pred             EEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEecc----ccccEEEEEEcCC-CCEEEEEe-CCCcEEEEeCCCC
Q 010883          283 CFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGD-GRYLISNG-KDQAIKLWDIRKM  355 (498)
Q Consensus       283 ~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~-~~~l~s~~-~dg~i~iwd~~~~  355 (498)
                      .|+ +++++|+++ ..+++|.+||+.    .++.+..+..    |.+....+ ++|+ +..++++. .|++|.+||+.+.
T Consensus       330 ~~s-pdg~~l~va~~~~~~v~v~D~~----tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~  403 (543)
T 1nir_A          330 GWD-SSHRYFMTAANNSNKVAVIDSK----DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPK  403 (543)
T ss_dssp             EEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             eEC-CCCCEEEEEecCCCeEEEEECC----CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence            998 778866554 568999999998    6777666653    54433333 4677 66667765 5899999999863


Q ss_pred             CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-------cCCe
Q 010883          356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-------HDSC  428 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-------~dg~  428 (498)
                      .....                           ..+.+.++..+....      +...++|++++|++++       .+++
T Consensus       404 ~~~~~---------------------------~~~~v~~l~~~g~~~------~~v~~~pdg~~l~v~~~~~~~~~~~~~  450 (543)
T 1nir_A          404 NHPQY---------------------------AWKKVAELQGQGGGS------LFIKTHPKSSHLYVDTTFNPDARISQS  450 (543)
T ss_dssp             TCTTT---------------------------BTSEEEEEECSCSCC------CCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred             CCchh---------------------------cCeEEEEEEcCCCCc------eEEEcCCCCCcEEEecCCCCCcccCce
Confidence            21100                           025667776664221      2336788999999987       3679


Q ss_pred             EEEEECCCCcEE-EEe--------ccCCCCeeeeEEcCCCCeEEEEe-----CCCcEEEecCCCCCCC
Q 010883          429 VYVYDLVSGEQV-AAL--------KYHTSPVRDCSWHPSQPMLVSSS-----WDGDVVRWEFPGNGEA  482 (498)
Q Consensus       429 i~iwd~~~~~~~-~~~--------~~h~~~v~~l~~sp~~~~l~s~~-----~Dg~i~iw~~~~~~~~  482 (498)
                      |.+||+.+++.. ..+        ..+...+..+.|+|+|+.|+++.     .|+.|.|||..+.+..
T Consensus       451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence            999999998876 443        34577899999999999887663     4799999999887543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=7.3e-24  Score=200.24  Aligned_cols=281  Identities=12%  Similarity=0.056  Sum_probs=210.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEE
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQ-------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVH  201 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~  201 (498)
                      ....+..++|+|+|+++++++.       ++.|.+||..+++........    ..+..++|+|+++++++++ .++.|.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEEEEecCCCEEE
Confidence            3456889999999999888874       568999999998766654332    2467899999999666554 478999


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      +||..+++.............       .......+.+++|+|+|+++++++  .++.|.+||+.+++.+..+..+...+
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  187 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRT-------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS  187 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCC-------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred             EEeCCCCeeEEEEecCCCccc-------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence            999999876554433211000       001111378899999999887776  47889999999999888886566678


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc----ccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK  354 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~  354 (498)
                      .+++|+ ++++++++++.++.|.+||+.    .++....+..    +...+..++|+|+++++++++. ++.|.+||+.+
T Consensus       188 ~~~~~s-~dg~~l~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          188 TGLALD-SEGKRLYTTNADGELITIDTA----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             CCCEEE-TTTTEEEEECTTSEEEEEETT----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             ceEEEC-CCCCEEEEEcCCCeEEEEECC----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            999998 788899999999999999997    6666655543    4556888999999998776665 48999999977


Q ss_pred             CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEE
Q 010883          355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYD  433 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd  433 (498)
                      .                                  +.+..+.....        ..++|+|+++++++++ .++.|.+||
T Consensus       263 ~----------------------------------~~~~~~~~~~~--------~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          263 G----------------------------------NILAKVAAPES--------LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             C----------------------------------CEEEEEECSSC--------CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             C----------------------------------cEEEEEEcCCC--------ceEEECCCCCEEEEEECCCCeEEEEE
Confidence            3                                  23333332221        2346778999776666 689999999


Q ss_pred             CCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       434 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                      +.+++.+..+..+ ..+.+++|+|++++|+.+..++
T Consensus       301 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          301 AKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             TTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence            9999998888744 4689999999999777766554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=7.1e-24  Score=198.53  Aligned_cols=281  Identities=13%  Similarity=0.116  Sum_probs=191.2

Q ss_pred             EEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCce-ecc
Q 010883          137 SQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTM-ESL  213 (498)
Q Consensus       137 ~~~s~dg~~-la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~-~~~  213 (498)
                      ..|.+++++ +++++.++.|.+||+.+++.......   +...+ .++|+|+++++++++. ++.|.+||..+++. ...
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            346666665 66777899999999999866554432   23355 9999999997777766 88999999998875 222


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                      ...                +..+..+++|+|+|++|+++..++   .|.+||+.+++.+..+.. ...+.+++|+ ++++
T Consensus        79 ~~~----------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-pdg~  140 (331)
T 3u4y_A           79 IQE----------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS-PNGN  140 (331)
T ss_dssp             EEE----------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC-TTSS
T ss_pred             ccc----------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC-CCCC
Confidence            211                112344499999999999555553   899999999998777654 4556999998 5665


Q ss_pred             -EEEEeeCCCe-EEEEcCccccCCCcee---EEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccC
Q 010883          291 -LIYSGSDDNL-CKVWDRRCLNVKGKPA---GVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       291 -~l~s~s~dg~-i~vwd~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~  364 (498)
                       ++++...++. |.+|++...   +...   .........+..++|+|+|++++++ ..++.|.+||+.+....      
T Consensus       141 ~l~~~~~~~~~~i~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~------  211 (331)
T 3u4y_A          141 GLILIDRSSANTVRRFKIDAD---GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI------  211 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECTT---CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC------
T ss_pred             EEEEEecCCCceEEEEEECCC---CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc------
Confidence             5555566688 999998621   1111   1122334568899999999966554 46889999999864320      


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcE--EE
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQ--VA  441 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~--~~  441 (498)
                                               +.+..+.....       ...++|+|||++|++++ .++.|.+||+.+++.  +.
T Consensus       212 -------------------------~~~~~~~~~~~-------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~  259 (331)
T 3u4y_A          212 -------------------------TLLNAVGTNNL-------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK  259 (331)
T ss_dssp             -------------------------EEEEEEECSSC-------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred             -------------------------ceeeeccCCCC-------CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence                                     11333332211       12346788999877765 477899999999877  44


Q ss_pred             EeccC----CCC---eeeeEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 010883          442 ALKYH----TSP---VRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG  480 (498)
Q Consensus       442 ~~~~h----~~~---v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~~~  480 (498)
                      .+..+    ..+   ...++|+|++++|++++ .++.|.+||+....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          260 SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             ccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            44322    222   24589999999876555 56799999997643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=5.8e-25  Score=206.84  Aligned_cols=277  Identities=13%  Similarity=0.160  Sum_probs=185.9

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-CeEEEEECC--CCceecccccccccc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVG--SGTMESLANVTEIHD  221 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~~i~iwd~~--~~~~~~~~~~~~~~~  221 (498)
                      ++++++.|+.|++|++........... ..+...+.+++|+|++++|++++.+ +.|.+|++.  +++.........   
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---   82 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---   82 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---
Confidence            444557799999999963211111111 2244478899999999999998886 899999997  555432222111   


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECC---CCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE---ANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-  296 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-  296 (498)
                                 + ..+.+++|+|+|++|++++. ++.|.+||+.   ..+....+. ....+.+++|+ ++++++++++ 
T Consensus        83 -----------~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s-~dg~~l~~~~~  148 (343)
T 1ri6_A           83 -----------P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANIS-PDNRTLWVPAL  148 (343)
T ss_dssp             -----------S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEEC-TTSSEEEEEEG
T ss_pred             -----------C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEEC-CCCCEEEEecC
Confidence                       1 15778999999998877765 8899999994   333444443 34568899998 7777777776 


Q ss_pred             CCCeEEEEcCccccCC-CceeE----Eecc-ccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCccccc
Q 010883          297 DDNLCKVWDRRCLNVK-GKPAG----VLMG-HLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYE  369 (498)
Q Consensus       297 ~dg~i~vwd~~~~~~~-~~~~~----~~~~-~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~  369 (498)
                      .++.|.+||+.    . ++...    .+.. ....+..++|+|+++++++++ .++.|.+||+.......          
T Consensus       149 ~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~----------  214 (343)
T 1ri6_A          149 KQDRICLFTVS----DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI----------  214 (343)
T ss_dssp             GGTEEEEEEEC----TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC----------
T ss_pred             CCCEEEEEEec----CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE----------
Confidence            89999999997    3 32221    2222 334788999999999776554 78999999996421110          


Q ss_pred             ccceeecCCcCcccccCCCCceEEEEc----cCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECC----CCcEE
Q 010883          370 WDYRWMDYPPQARDLKHPCDQSVATYK----GHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV----SGEQV  440 (498)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~----~~~~~  440 (498)
                                          .......    ++......    ..++|+|++++|+++. .++.|++||+.    +.+.+
T Consensus       215 --------------------~~~~~~~~~~~~~~~~~~~----~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          215 --------------------ECVQTLDMMPENFSDTRWA----ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             --------------------EEEEEEECSCTTCCSCCCE----EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             --------------------EEEeeccccCccccccCCc----cceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence                                0011111    00101111    1236777998887554 78999999998    23455


Q ss_pred             EEeccCCCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCC
Q 010883          441 AALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG  478 (498)
Q Consensus       441 ~~~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~  478 (498)
                      ..+..+.. +.+++|+|++++|++++ .|+.|.+|+++.
T Consensus       271 ~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          271 GFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            55655544 89999999999888887 689999996653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=3.8e-26  Score=237.34  Aligned_cols=288  Identities=11%  Similarity=0.060  Sum_probs=201.4

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEeCCCCCeEEEEECC---------CeE
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMS---------PIV  200 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~s~d---------~~i  200 (498)
                      .+.+++|+|||+++++ +.||+|++||+.+++.....   ..+..   .|.+++|||||++|++++.+         +.|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~---~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI---EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE---CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe---ccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            4677899999998776 68999999999988544322   23332   48999999999999999874         788


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-  279 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v-  279 (498)
                      .+||+.+++...+...              .+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+ 
T Consensus        94 ~~~d~~~~~~~~l~~~--------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~  158 (723)
T 1xfd_A           94 VLSKIPHGDPQSLDPP--------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI  158 (723)
T ss_dssp             EEEESSSCCCEECCCT--------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred             EEEECCCCceEeccCC--------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce
Confidence            9999998875322211              123335788999999999999886 789999999988765554444433 


Q ss_pred             -----------------eEEEEeCCCCCEEEEeeCCC----------------------------------eEEEEcCcc
Q 010883          280 -----------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRC  308 (498)
Q Consensus       280 -----------------~~~~~~~~~~~~l~s~s~dg----------------------------------~i~vwd~~~  308 (498)
                                       .+++|+ |+++.|++++.|+                                  .|++||+. 
T Consensus       159 ~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-  236 (723)
T 1xfd_A          159 YNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN-  236 (723)
T ss_dssp             EEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-
T ss_pred             ECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-
Confidence                             789998 7889888887553                                  79999987 


Q ss_pred             ccCCCceeEEeccc------cccEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883          309 LNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP  378 (498)
Q Consensus       309 ~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (498)
                         .+.....+..+      ...+..++|+|||++|++...    +..|++||+.+..                      
T Consensus       237 ---~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~----------------------  291 (723)
T 1xfd_A          237 ---GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV----------------------  291 (723)
T ss_dssp             ---SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC----------------------
T ss_pred             ---CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc----------------------
Confidence               44444445443      567899999999998876643    3579999987732                      


Q ss_pred             cCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEE--ecCC------eEEEEE-CCCCc--EEEEeccC
Q 010883          379 PQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTG--SHDS------CVYVYD-LVSGE--QVAALKYH  446 (498)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg------~i~iwd-~~~~~--~~~~~~~h  446 (498)
                                  ....+..+ .....  .....+.|||||+.|+..  ..++      .|++|| ...++  +...+..+
T Consensus       292 ------------~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~  357 (723)
T 1xfd_A          292 ------------CTKKHEDESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG  357 (723)
T ss_dssp             ------------EEEEEEEECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred             ------------ceEEEEeccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC
Confidence                        22221111 10000  001256789999977754  4566      577788 34444  14455544


Q ss_pred             CCCeee-eEEcCCCCeEEEEeCC---CcEEEecCCCCC
Q 010883          447 TSPVRD-CSWHPSQPMLVSSSWD---GDVVRWEFPGNG  480 (498)
Q Consensus       447 ~~~v~~-l~~sp~~~~l~s~~~D---g~i~iw~~~~~~  480 (498)
                      ...+.. ++|+|||+.|+..+.+   +.+++|++....
T Consensus       358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred             CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence            445554 6999999988766655   789999987543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=8.2e-25  Score=201.05  Aligned_cols=256  Identities=15%  Similarity=0.139  Sum_probs=187.6

Q ss_pred             EECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC-CceeccccccccccCccccc
Q 010883          149 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSA  227 (498)
Q Consensus       149 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~  227 (498)
                      ++.|+.|++||+.+++....    ..|...|.+++|+|++++|++++ ++.|.+||+.+ ++........          
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~----~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~----------   82 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVV----WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF----------   82 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEE----EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT----------
T ss_pred             CCcceeEEEEeCCCCceeee----ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc----------
Confidence            45689999999998854422    23455899999999999999987 78999999988 7654333211          


Q ss_pred             cCCCCceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCCeEE
Q 010883          228 ADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCK  302 (498)
Q Consensus       228 ~~~~~h~~~i~~~~~s~~g~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~  302 (498)
                           +...+.+++|+|+|++|++++.    ...|.+|++.+++. ..+.. ...+..++|+ ++++.|+ +++.++.++
T Consensus        83 -----~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~s-pdg~~l~~~~~~~~~~~  154 (297)
T 2ojh_A           83 -----ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-NLPSYWHGWS-PDGKSFTYCGIRDQVFD  154 (297)
T ss_dssp             -----CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS-SSSEEEEEEC-TTSSEEEEEEEETTEEE
T ss_pred             -----ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec-CCCccceEEC-CCCCEEEEEECCCCceE
Confidence                 1236788999999999999983    24556666666553 34433 3458999998 6677665 788999999


Q ss_pred             EEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883          303 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA  381 (498)
Q Consensus       303 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (498)
                      +|+++.   .......+..+...+.+++|+|++++|++++ .++.+++|++....                         
T Consensus       155 l~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-------------------------  206 (297)
T 2ojh_A          155 IYSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-------------------------  206 (297)
T ss_dssp             EEEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------------------------
T ss_pred             EEEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------------------------
Confidence            999752   2344566677888999999999999888766 58999999886311                         


Q ss_pred             ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-----------CeEEEEECCCCcE--EEEeccCCC
Q 010883          382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----------SCVYVYDLVSGEQ--VAALKYHTS  448 (498)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~--~~~~~~h~~  448 (498)
                              ..+..+..+..      ....+.|+|+|++|++++.+           +.|++||+.+++.  +..+.+|..
T Consensus       207 --------~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  272 (297)
T 2ojh_A          207 --------SSVERITDSAY------GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG  272 (297)
T ss_dssp             --------SCEEECCCCSE------EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT
T ss_pred             --------CCcEEEecCCc------ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc
Confidence                    22333333331      22345778899999988876           5699999988865  444557888


Q ss_pred             CeeeeEEcCCCCeEEEEeCCC
Q 010883          449 PVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       449 ~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                      .+.+++|+|+++.|++++.|.
T Consensus       273 ~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          273 TMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TSCSCCBCTTSSEEEEEEECC
T ss_pred             ccccceECCCCCEEEEEEecc
Confidence            999999999999888887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=3.5e-24  Score=230.71  Aligned_cols=304  Identities=12%  Similarity=0.134  Sum_probs=216.3

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEeecCCCceeE-------EEEEeCCCC
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTV-------TDTSLSPDQ  188 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v-------~~~~~sp~~  188 (498)
                      .....+..|...+.+++|||||++||+++.+      ..|++|++.++. ..   ....|...+       ..++|+|||
T Consensus        43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg  118 (1045)
T 1k32_A           43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDG  118 (1045)
T ss_dssp             CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTC
T ss_pred             CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCC
Confidence            3456778899999999999999999988643      379999999874 22   334566677       899999999


Q ss_pred             CeEEEEECC------CeEEEEECCCCceecccccccc-------------------------------------------
Q 010883          189 RHLVYASMS------PIVHIVDVGSGTMESLANVTEI-------------------------------------------  219 (498)
Q Consensus       189 ~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~-------------------------------------------  219 (498)
                      +++++++.+      ..|.+|++.+++...+......                                           
T Consensus       119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~  198 (1045)
T 1k32_A          119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK  198 (1045)
T ss_dssp             CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred             EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence            966666644      3688888877654322111000                                           


Q ss_pred             --------------ccCccccccC------------------CCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883          220 --------------HDGLDFSAAD------------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK  267 (498)
Q Consensus       220 --------------~~~~~~~~~~------------------~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  267 (498)
                                    .+.+-+....                  ...|. .+...+|+|||+.|+++ .++.|++||+...+
T Consensus       199 l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~  276 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK  276 (1045)
T ss_dssp             EECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             CcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE
Confidence                          0000000000                  00111 24466888888877777 47788888884443


Q ss_pred             eeEEEec-----------cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc-cEEEEEEcCCC
Q 010883          268 LSLRILA-----------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDG  335 (498)
Q Consensus       268 ~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~  335 (498)
                      . ..+..           |...+.+++|+||+++.|++++ ++.|.+|++.    .+. ...+..|.. .+..++|+ ||
T Consensus       277 l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~----~~~-~~~~~~~~~~~~~~~~~s-dg  348 (1045)
T 1k32_A          277 I-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS----GTY-VLKVPEPLRIRYVRRGGD-TK  348 (1045)
T ss_dssp             E-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----SSB-EEECSCCSCEEEEEECSS-SE
T ss_pred             e-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----CCc-eEEccCCCcceEEeeeEc-CC
Confidence            3 34433           3346899999735677777776 8899999986    333 344666777 89999999 99


Q ss_pred             CEEEEEeCCCcEE-EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          336 RYLISNGKDQAIK-LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       336 ~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      +.|++++.++.+. +||+....                                   ...+.++..  .    ...++||
T Consensus       349 ~~l~~~s~~~~l~~~~d~~~~~-----------------------------------~~~l~~~~~--~----~~~~~~S  387 (1045)
T 1k32_A          349 VAFIHGTREGDFLGIYDYRTGK-----------------------------------AEKFEENLG--N----VFAMGVD  387 (1045)
T ss_dssp             EEEEEEETTEEEEEEEETTTCC-----------------------------------EEECCCCCC--S----EEEEEEC
T ss_pred             CeEEEEECCCceEEEEECCCCC-----------------------------------ceEecCCcc--c----eeeeEEC
Confidence            9999998888888 88987521                                   222222221  1    1334678


Q ss_pred             CCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC----------cEEEecCCCCC
Q 010883          415 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG----------DVVRWEFPGNG  480 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg----------~i~iw~~~~~~  480 (498)
                      |||++|++++.++.|++||+.+++....+..|...+.+++|+|||++|++++.++          .|++||+.++.
T Consensus       388 pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          388 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            8999999999999999999999998888878999999999999999998887654          89999998754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=1.1e-23  Score=218.13  Aligned_cols=293  Identities=11%  Similarity=0.059  Sum_probs=201.8

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC----
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS----  207 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~----  207 (498)
                      ..|.+++|||| +.++.+. ++.|++||+.+++.... .   .+...+.+++|+|||++|+++ .++.|++|++.+    
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~---~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-F---DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-E---CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-c---CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence            57999999999 6666654 59999999998844322 1   233468889999999999985 679999999988    


Q ss_pred             -Cceeccccccccc--cCccccccCCCCceecEEEEEEcCCCCEEEEEe-------------------------------
Q 010883          208 -GTMESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------------------  253 (498)
Q Consensus       208 -~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-------------------------------  253 (498)
                       ++...........  .+..    ....+...+.+++|+|||++|++++                               
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQA----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSC----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             CCCcEEeccCCCCCeEcccc----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence             6654432211100  0000    0000111357899999999999987                               


Q ss_pred             --CCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCC-----eEEEEcCccccCCCceeEEec-c-c
Q 010883          254 --SDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLM-G-H  322 (498)
Q Consensus       254 --~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~-~-~  322 (498)
                        .+..|++||+.+++......  .|...+.+++|+ ++++.|++++.++     .|++||+.    .+.....+. . +
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~  305 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETD  305 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEEC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccC
Confidence              44679999999987644332  466789999998 7899888887775     89999997    442333222 1 1


Q ss_pred             cc---cEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883          323 LE---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG  397 (498)
Q Consensus       323 ~~---~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (498)
                      ..   .+..+.|+|  ||++++++..|+.++||++...                                 +..+..+..
T Consensus       306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~---------------------------------~~~~~~l~~  352 (706)
T 2z3z_A          306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT---------------------------------GRLIRQVTK  352 (706)
T ss_dssp             SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT---------------------------------SCEEEECCC
T ss_pred             CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC---------------------------------CCEEEecCC
Confidence            11   246789999  9999999999999999987621                                 133333433


Q ss_pred             CceeEEEEEEEeccccCCCCcEEEEEec-CC----eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC----
Q 010883          398 HSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD----  468 (498)
Q Consensus       398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D----  468 (498)
                      +....  ..   .+.|+|+++.|+.++. ++    .|+.||+.+++ ...+. |...+.+++|+|||++|+.+..+    
T Consensus       353 ~~~~v--~~---~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p  425 (706)
T 2z3z_A          353 GEWEV--TN---FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVP  425 (706)
T ss_dssp             SSSCE--EE---EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCS
T ss_pred             CCeEE--Ee---eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCC
Confidence            32111  11   1367789988776655 44    67888887776 34444 67789999999999988776443    


Q ss_pred             CcEEEecCCCCC
Q 010883          469 GDVVRWEFPGNG  480 (498)
Q Consensus       469 g~i~iw~~~~~~  480 (498)
                      +.|++||+.++.
T Consensus       426 ~~i~l~d~~~~~  437 (706)
T 2z3z_A          426 RKVTVTNIGKGS  437 (706)
T ss_dssp             CEEEEEESSSCE
T ss_pred             cEEEEEECCCCe
Confidence            469999987764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=5.5e-23  Score=192.77  Aligned_cols=274  Identities=12%  Similarity=0.073  Sum_probs=195.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-eEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCceecccccccccc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHD  221 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (498)
                      ++|++++.++.|.+||+.+++.+......  +.. .+..++|+|++++++++ ..++.|.+||+.+++..........  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc--
Confidence            47899999999999999998666544322  111 36789999999876554 5578999999998876544332110  


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCC
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  289 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  289 (498)
                               ..|...+.+++|+|+|++|+++.            .++.|.+||+.+++.+..+.. ...+.+++|+ +++
T Consensus        78 ---------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg  146 (337)
T 1pby_B           78 ---------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDG  146 (337)
T ss_dssp             ---------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTS
T ss_pred             ---------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCC
Confidence                     01223466799999999998886            579999999999888776654 4567889998 777


Q ss_pred             CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC------------------------
Q 010883          290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ------------------------  345 (498)
Q Consensus       290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg------------------------  345 (498)
                      ++|+++  ++.|.+||+.    .++....+..+... ..+.|+|++..++..+..+                        
T Consensus       147 ~~l~~~--~~~i~~~d~~----~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T 1pby_B          147 SKLYGL--GRDLHVMDPE----AGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             SCEEEE--SSSEEEEETT----TTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             CEEEEe--CCeEEEEECC----CCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence            777777  6899999997    66666555543310 1237899988776554433                        


Q ss_pred             cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec
Q 010883          346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  425 (498)
                      .|.+||+.+....                                 ...+..+.  .    ....++|+||+++++++  
T Consensus       220 ~v~~~d~~~~~~~---------------------------------~~~~~~~~--~----~~~~~~~s~dg~~l~~~--  258 (337)
T 1pby_B          220 GLLTMDLETGEMA---------------------------------MREVRIMD--V----FYFSTAVNPAKTRAFGA--  258 (337)
T ss_dssp             EEEEEETTTCCEE---------------------------------EEEEEECS--S----CEEEEEECTTSSEEEEE--
T ss_pred             ceEEEeCCCCCce---------------------------------EeecCCCC--C----ceeeEEECCCCCEEEEe--
Confidence            3567777652210                                 01111111  0    11234678899999988  


Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.|+.|.+||+.+++.
T Consensus       259 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          259 YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence            799999999999988887643 4678999999999999999999999999987654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=2.5e-23  Score=210.34  Aligned_cols=276  Identities=14%  Similarity=0.036  Sum_probs=191.1

Q ss_pred             CCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---CCeEEEEECC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVG  206 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---d~~i~iwd~~  206 (498)
                      ..+|++++|+|||++||+++. ||+++||+++++.. ..  ....+...+..++|+|| +++++++.   +....+|.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~--lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VK--LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EE--CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Ee--eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            457999999999999999887 99999999976633 22  22333357999999999 77777765   4445565543


Q ss_pred             C---CceeccccccccccCccccccCCCCceecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883          207 S---GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV  282 (498)
Q Consensus       207 ~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  282 (498)
                      .   +....+...                +  .+...+|+|+|+. +++.+.++.+.+||+.+++..... .+..  .++
T Consensus        97 ~~~~g~~~~l~~~----------------~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~--~~~  155 (582)
T 3o4h_A           97 TSRPGEEQRLEAV----------------K--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG--FGF  155 (582)
T ss_dssp             TTSTTCCEECTTS----------------C--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS--CEE
T ss_pred             ccCCCccccccCC----------------C--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC--ceE
Confidence            2   221111110                0  2335577887753 333334445669999988765444 3333  889


Q ss_pred             EEeCCCCCEEEEeeCC----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCC
Q 010883          283 CFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKMS  356 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg--~i~iwd~~~~~  356 (498)
                      +|+ |++++|++++.+    +.|++||+.    .++ ...+..|...+..++|+|||+.|+++..++  .|++||+.+..
T Consensus       156 ~~s-pDG~~la~~~~~~~~~~~i~~~d~~----~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          156 VSD-IRGDLIAGLGFFGGGRVSLFTSNLS----SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             EEE-EETTEEEEEEEEETTEEEEEEEETT----TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             EEC-CCCCEEEEEEEcCCCCeEEEEEcCC----CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence            998 789999988877    789999986    433 346778888899999999999999888888  89999998733


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE--EEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI--RCHFSPVYSTGQKYIYTGSHDSCVYVYDL  434 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~iwd~  434 (498)
                      .                                  . .+..+.......  .....+.|||||.++++++.++.+++|++
T Consensus       230 ~----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          230 V----------------------------------E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             E----------------------------------E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             E----------------------------------E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            2                                  1 222221100000  00011238889999999999999999999


Q ss_pred             CCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCc---EEEecCCC
Q 010883          435 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD---VVRWEFPG  478 (498)
Q Consensus       435 ~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~---i~iw~~~~  478 (498)
                        ++.+.   .+.+.|.+++|+ +++++++++.+..   |.+|+..+
T Consensus       275 --g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          275 --GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             --TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             --CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence              66554   344678999999 9999988887744   77777653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=7.2e-23  Score=220.56  Aligned_cols=304  Identities=12%  Similarity=0.030  Sum_probs=221.0

Q ss_pred             CCCceEEEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-eEEEEEeCCCCCeEEEEECCCeEE-EEECC
Q 010883          130 TTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYASMSPIVH-IVDVG  206 (498)
Q Consensus       130 h~~~v~~~~~s-~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~s~d~~i~-iwd~~  206 (498)
                      |...+.+++|| |||++||+++ ++.|.+|++.++....    ...+.. .+..++|+ ||+.|++++.++.+. +|++.
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~  367 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR  367 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence            44579999999 9999999887 7899999998874332    234555 79999999 999999999888888 99998


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  286 (498)
                      +++...+.                 +|...+..++|+|||++|++++.++.|++||+.+++....+..|...+.+++|+ 
T Consensus       368 ~~~~~~l~-----------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S-  429 (1045)
T 1k32_A          368 TGKAEKFE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS-  429 (1045)
T ss_dssp             TCCEEECC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-
T ss_pred             CCCceEec-----------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC-
Confidence            76543322                 233478999999999999999999999999999998877777899999999998 


Q ss_pred             CCCCEEEEeeCCC----------eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          287 ESGHLIYSGSDDN----------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       287 ~~~~~l~s~s~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      |++++|++++.++          .|++||+.    .++ ...+..|...+..++|+|||++|++++.++...+|+.....
T Consensus       430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDME----GRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETT----TTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             CCCCeEEEEecCccccccCCCCCeEEEEECC----CCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence            7889888887654          89999996    444 67778888889999999999999999999888999876432


Q ss_pred             CccccccCcccccccceeecCCcCcccc--------------cCCC--CceEEEEccCceeEEEEEEEeccccCCCCcEE
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDL--------------KHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI  420 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  420 (498)
                      ....  .     ......+.+.+.....              ....  ...+..+..+...      .....++|||.++
T Consensus       505 ~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~------~~~~~~s~dg~~~  571 (1045)
T 1k32_A          505 FSFE--V-----VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD------YRMIIPLESSILI  571 (1045)
T ss_dssp             EECC--S-----CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC------EEEEEECSSEEEE
T ss_pred             cccc--c-----CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCC------hhheEEcCCCeEE
Confidence            1100  0     0000011111111000              0000  0122223222211      1223567799877


Q ss_pred             EE-------------EecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          421 YT-------------GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       421 ~~-------------g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ++             ......|++||+.+++.....    ..+.+++|||||+.|++++.| .|++||+..+.
T Consensus       572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             EEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence            75             123457999999888754333    568899999999999999866 89999998766

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=1.2e-22  Score=191.42  Aligned_cols=277  Identities=11%  Similarity=0.045  Sum_probs=176.4

Q ss_pred             CCeEEEEECC--CCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---CCeEEEEECCCCceeccccccccccCcccc
Q 010883          152 ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFS  226 (498)
Q Consensus       152 dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (498)
                      ++.|.+|.++  ++.......  ..+...+..++|+|+|+ |++++.   ++.|.+|++.+++.........        
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~--------   83 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA--------   83 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE--------
T ss_pred             CCCEEEEEEcCCCCeEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec--------
Confidence            4567777664  453322111  12223577899999999 555554   5899999997766433322111        


Q ss_pred             ccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-Ce--eeEEEec---------cCCCeeEEEEeCCCCCEEE
Q 010883          227 AADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NK--LSLRILA---------HTSDVNTVCFGDESGHLIY  293 (498)
Q Consensus       227 ~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~~l~  293 (498)
                            +...+..++|+|+|++|++++ .++.|.+|++.. +.  .+..+..         +...+.+++|+ +++++++
T Consensus        84 ------~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v  156 (347)
T 3hfq_A           84 ------PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAV  156 (347)
T ss_dssp             ------ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEE
T ss_pred             ------CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEE
Confidence                  222577899999999888888 679999999963 22  2233321         12347889998 6777777


Q ss_pred             EeeCCCeEEEEcCccccCCCceeEEecc-ccccEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCCCccccccCccccccc
Q 010883          294 SGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWD  371 (498)
Q Consensus       294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  371 (498)
                      +...++.|.+|++.... .......+.. ....+..++|+|||++|++ +..++.|.+|++.......            
T Consensus       157 ~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~------------  223 (347)
T 3hfq_A          157 IDLGSDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF------------  223 (347)
T ss_dssp             EETTTTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE------------
T ss_pred             EeCCCCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce------------
Confidence            77778999999986111 1111222222 2236788999999996665 5567899999987421100            


Q ss_pred             ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE-EecCCeEEEEECCC---CcEEEEeccCC
Q 010883          372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVS---GEQVAALKYHT  447 (498)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~---~~~~~~~~~h~  447 (498)
                                        ..+..+...............++|+|||++|++ ...++.|.+|++..   .+.+..+..+.
T Consensus       224 ------------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~  285 (347)
T 3hfq_A          224 ------------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG  285 (347)
T ss_dssp             ------------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS
T ss_pred             ------------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC
Confidence                              011111111100000011233467889998855 45589999999973   35566666667


Q ss_pred             CCeeeeEEcCCCCeEEEEeCC-CcEEEecCC
Q 010883          448 SPVRDCSWHPSQPMLVSSSWD-GDVVRWEFP  477 (498)
Q Consensus       448 ~~v~~l~~sp~~~~l~s~~~D-g~i~iw~~~  477 (498)
                      ..+.+++|+|||++|++++.+ +.|.+|+++
T Consensus       286 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          286 DFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             SCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            778999999999988888754 899999664

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2.3e-23  Score=216.94  Aligned_cols=293  Identities=13%  Similarity=0.100  Sum_probs=201.5

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ..|.+++|||||++|++++. +.|++||+.++.  ...   ....+...+..++|+|||++|++++ ++.|++||+.+++
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence            34889999999999999986 899999998761  122   2234556799999999999999987 4689999999887


Q ss_pred             eeccccccccc--cCc-cccccCCCCceecEEEEEEcCCCCEEEEEeCCC------------------------------
Q 010883          210 MESLANVTEIH--DGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------------------------------  256 (498)
Q Consensus       210 ~~~~~~~~~~~--~~~-~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg------------------------------  256 (498)
                      ...+.......  .+. .+...   .....+.+++|+|||++|++++.|+                              
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~---~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVAD---EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHH---HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             EEEeccCCccceeccccceeee---eccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence            65443211100  000 00000   0001247799999999999987765                              


Q ss_pred             ---eEEEEECCC-CeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeC-----CCeEEEEcCccccCCCceeEEeccccc-
Q 010883          257 ---CIYVYDLEA-NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLNVKGKPAGVLMGHLE-  324 (498)
Q Consensus       257 ---~i~vwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~-  324 (498)
                         .|++||+.+ ++......  .|...+..++|  ++++.|++++.     +..|++||+.    .+.....+..+.. 
T Consensus       261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~  334 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVLAHETSPT  334 (741)
T ss_dssp             CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETT----TCCEEEEEEEECSS
T ss_pred             CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECC----CCceEEEEEcCCCC
Confidence               799999988 77644332  47778999999  46777776543     5689999997    5665555554443 


Q ss_pred             ---cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883          325 ---GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL  401 (498)
Q Consensus       325 ---~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (498)
                         .+..++|+|||+++++++.|+.++||.+....                                 . ...+..+...
T Consensus       335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---------------------------------~-~~~l~~~~~~  380 (741)
T 2ecf_A          335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---------------------------------K-AAALTHGNWS  380 (741)
T ss_dssp             CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS---------------------------------C-EEESCCSSSC
T ss_pred             cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC---------------------------------C-eeeeeecceE
Confidence               44688999999999999999988888775311                                 2 2333333211


Q ss_pred             EEEEEEEeccccCCCCcEEEE-EecCC--eEEEEECCC-CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC----CcEEE
Q 010883          402 RTLIRCHFSPVYSTGQKYIYT-GSHDS--CVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD----GDVVR  473 (498)
Q Consensus       402 ~~~~~~~~~~~~s~~~~~l~~-g~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D----g~i~i  473 (498)
                        +...   ..|+|+++.|+. ++.++  .++||++.. +..+..+.. ...+.+++|+||+++|+....+    +.+.+
T Consensus       381 --v~~~---~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l  454 (741)
T 2ecf_A          381 --VDEL---LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL  454 (741)
T ss_dssp             --EEEE---EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             --EEeE---eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence              1111   136779987755 44455  899999864 555666665 6678999999999987766443    46888


Q ss_pred             ecCCC
Q 010883          474 WEFPG  478 (498)
Q Consensus       474 w~~~~  478 (498)
                      |+..+
T Consensus       455 ~~~~~  459 (741)
T 2ecf_A          455 FRANG  459 (741)
T ss_dssp             EETTS
T ss_pred             EEcCC
Confidence            88754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=3e-23  Score=215.54  Aligned_cols=290  Identities=13%  Similarity=0.089  Sum_probs=192.9

Q ss_pred             ccccCCCC---ceEEEEEcCCCCEEEEEECC---------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883          125 WPVDQTTS---RAYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV  192 (498)
Q Consensus       125 ~~l~~h~~---~v~~~~~s~dg~~la~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  192 (498)
                      ..+..|..   .|.+++|||||++||+++.+         +.|.+||+.++.. ..+.....+...+..++|||||+.|+
T Consensus        51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la  129 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLI  129 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEE
Confidence            34444544   49999999999999999874         7888999998854 23333334444588999999999999


Q ss_pred             EEECCCeEEEEECCCCceeccccccccccCccccccCCCCce---------ecEEEEEEcCCCCEEEEEeCCC-------
Q 010883          193 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVAGSSDD-------  256 (498)
Q Consensus       193 ~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~i~~~~~s~~g~~l~~g~~dg-------  256 (498)
                      +++. +.|++|++.+++...+......  ...+     .++.         ..+.+++|+|||+.|++++.++       
T Consensus       130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~--~~~~-----~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~  201 (723)
T 1xfd_A          130 FIFE-NNIYYCAHVGKQAIRVVSTGKE--GVIY-----NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (723)
T ss_dssp             EEET-TEEEEESSSSSCCEEEECCCBT--TTEE-----EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             EEEC-CeEEEEECCCCceEEEecCCCC--CceE-----CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence            9886 7999999998776543321110  0000     0000         1247899999999999987543       


Q ss_pred             ---------------------------eEEEEECCCCeeeEEEecc------CCCeeEEEEeCCCCCEEEEeeC----CC
Q 010883          257 ---------------------------CIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGSD----DN  299 (498)
Q Consensus       257 ---------------------------~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~s~----dg  299 (498)
                                                 .|++||+.+++....+..+      ...+..++|+ +++++|++.+.    +.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~  280 (723)
T 1xfd_A          202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVS  280 (723)
T ss_dssp             ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEE
T ss_pred             eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe-CCCeEEEEEEcCCCCeE
Confidence                                       7999999998865666544      5678999998 78888876643    35


Q ss_pred             eEEEEcCccccCCCceeEEeccc-cccE----EEEEEcCCCCEEEE--EeCCC------cEEEEeC-CCCCCccccccCc
Q 010883          300 LCKVWDRRCLNVKGKPAGVLMGH-LEGI----TFIDSRGDGRYLIS--NGKDQ------AIKLWDI-RKMSSNASCNLGF  365 (498)
Q Consensus       300 ~i~vwd~~~~~~~~~~~~~~~~~-~~~v----~~l~~~~~~~~l~s--~~~dg------~i~iwd~-~~~~~~~~~~~~~  365 (498)
                      .|++||+.    .++....+..+ ...+    ..++|+|||+.|+.  +..++      .|.+||+ ......       
T Consensus       281 ~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-------  349 (723)
T 1xfd_A          281 ILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND-------  349 (723)
T ss_dssp             EEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-------
T ss_pred             EEEEEeCC----CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-------
Confidence            79999987    55555444332 3333    37899999997775  45666      4666773 321100       


Q ss_pred             ccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCc--E
Q 010883          366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGE--Q  439 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~--~  439 (498)
                                               ....+. ++....      ..+.|||||+.|+..+.+   +.++||++....  .
T Consensus       350 -------------------------~~~~l~~~~~~~~------~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~  398 (723)
T 1xfd_A          350 -------------------------NIQSITSGDWDVT------KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN  398 (723)
T ss_dssp             -------------------------CCCBSCCSSSCEE------EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred             -------------------------ceeEeecCCeEEE------eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence                                     000111 111110      113678899999876655   789999986432  3


Q ss_pred             EEEecc---CCCCeeeeEEcCCCCeEEEEe
Q 010883          440 VAALKY---HTSPVRDCSWHPSQPMLVSSS  466 (498)
Q Consensus       440 ~~~~~~---h~~~v~~l~~sp~~~~l~s~~  466 (498)
                      ...+..   |...+..++|+|||++|+...
T Consensus       399 ~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          399 RQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             CBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             cceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            344443   667789999999999777653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=3.8e-23  Score=214.05  Aligned_cols=282  Identities=12%  Similarity=0.088  Sum_probs=194.0

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeecCCC--------------ceeEEEEEeCCCCCeEEEEECCC
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSL--------------RWTVTDTSLSPDQRHLVYASMSP  198 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~-~~~~~~~~~--------------~~~v~~~~~sp~~~~l~~~s~d~  198 (498)
                      +..+.|+  |+.+++++.|+ | +||+.+++.+ .........              ...|.+++|+|| +.++.+. ++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence            4446787  66777777787 8 9999998652 322221111              136999999999 6666664 59


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeeeEEEe
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRIL  273 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-----~~~~~~~~  273 (498)
                      .|++||+.+++.......                 ...+.+++|+|||+.|+++ .++.|++||+.+     ++......
T Consensus       102 ~i~~~d~~~~~~~~l~~~-----------------~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~  163 (706)
T 2z3z_A          102 GLVGFDMLARKVTYLFDT-----------------NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI  163 (706)
T ss_dssp             EEEEEETTTTEEEEEECC-----------------TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred             EEEEEECCCCceEEccCC-----------------cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence            999999998875443221                 1256778999999999985 679999999998     76654333


Q ss_pred             ccCCC--------------eeEEEEeCCCCCEEEEee---------------------------------CCCeEEEEcC
Q 010883          274 AHTSD--------------VNTVCFGDESGHLIYSGS---------------------------------DDNLCKVWDR  306 (498)
Q Consensus       274 ~~~~~--------------v~~~~~~~~~~~~l~s~s---------------------------------~dg~i~vwd~  306 (498)
                      .+...              +.++.|+ |++++|++++                                 .+..|++||+
T Consensus       164 ~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~  242 (706)
T 2z3z_A          164 DGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL  242 (706)
T ss_dssp             CCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred             CCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence            33332              4889998 8899998887                                 4468999999


Q ss_pred             ccccCCCceeEEe--ccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCCCccccccCcccccccceeecCCc
Q 010883          307 RCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP  379 (498)
Q Consensus       307 ~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (498)
                      .    .+......  ..|...+..++|+|||+.|++++.++     .|++||+.+..                       
T Consensus       243 ~----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-----------------------  295 (706)
T 2z3z_A          243 A----TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-----------------------  295 (706)
T ss_dssp             T----TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----------------------
T ss_pred             C----CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----------------------
Confidence            6    44433332  24667899999999999999887775     89999998731                       


Q ss_pred             CcccccCCCCceEEEEccCceeEEEEEEEeccccCC--CCcEEEEEecCCeEEEEECC-CCcEEEEeccCCCCeee-eEE
Q 010883          380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST--GQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHTSPVRD-CSW  455 (498)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~-l~~  455 (498)
                                 ....+...... ........+.|+|  ||+++++++.|+.++||++. ++..+..+..|...+.+ ++|
T Consensus       296 -----------~~~~~~~~~~~-~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~  363 (706)
T 2z3z_A          296 -----------FVRTLFVETDK-HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF  363 (706)
T ss_dssp             -----------EEEEEEEEECS-SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred             -----------eeeEEEEccCC-CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence                       11111100000 0000113457899  99999999999999999876 67778888888888887 799


Q ss_pred             cCCCCeEEEEeC-CC----cEEEecCCCC
Q 010883          456 HPSQPMLVSSSW-DG----DVVRWEFPGN  479 (498)
Q Consensus       456 sp~~~~l~s~~~-Dg----~i~iw~~~~~  479 (498)
                      +|+++.|+.++. ++    .|..|++.++
T Consensus       364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          364 DPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             CTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             cCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            999997766554 44    5666676554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=6.8e-22  Score=185.81  Aligned_cols=277  Identities=14%  Similarity=0.122  Sum_probs=181.3

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECC-CeEEEEECC--CCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQA-SQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVD  204 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd  204 (498)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++...... ....+. .+..++|+|++++|++++. ++.|.+|+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-ESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-EEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc-ccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            456778899999999999988886 899999997  55322211 111222 6889999999998877765 88999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CeeeE----EEec-cCC
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NKLSL----RILA-HTS  277 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~-~~~~~----~~~~-~~~  277 (498)
                      +..+..........              ....+.+++|+|+|++|++++ .++.|.+||+.+ ++...    .+.. ...
T Consensus       113 ~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  178 (343)
T 1ri6_A          113 LEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA  178 (343)
T ss_dssp             EETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred             CCCCcccccccccc--------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence            95332211111110              111477899999999888887 889999999987 55432    2222 345


Q ss_pred             CeeEEEEeCCCCCEEE-EeeCCCeEEEEcCccccCCCceeEEec---cc---cccEEEEEEcCCCCEEEE-EeCCCcEEE
Q 010883          278 DVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLM---GH---LEGITFIDSRGDGRYLIS-NGKDQAIKL  349 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~---~~~v~~l~~~~~~~~l~s-~~~dg~i~i  349 (498)
                      .+.+++|+ +++++++ ++..++.|.+||+..............   ..   ...+..++|+|++++|++ +..++.|.+
T Consensus       179 ~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          179 GPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  257 (343)
T ss_dssp             CEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence            78899998 6777655 445889999999952111111122222   11   235678999999988874 447899999


Q ss_pred             EeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCe
Q 010883          350 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSC  428 (498)
Q Consensus       350 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~  428 (498)
                      ||+......                              ...+..+..+..       ...++|+|+|++|++++ .++.
T Consensus       258 ~d~~~~~~~------------------------------~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          258 FSVSEDGSV------------------------------LSKEGFQPTETQ-------PRGFNVDHSGKYLIAAGQKSHH  300 (343)
T ss_dssp             EEECTTSCC------------------------------EEEEEEEECSSS-------CCCEEECTTSSEEEEECTTTCE
T ss_pred             EEEcCCCCc------------------------------eEEeeeecCCCc-------cceEEECCCCCEEEEecCCCCe
Confidence            999731100                              022222222221       12346788999988888 5899


Q ss_pred             EEEEE--CCCCc--EEEEeccCCCCeeeeEEcCCCC
Q 010883          429 VYVYD--LVSGE--QVAALKYHTSPVRDCSWHPSQP  460 (498)
Q Consensus       429 i~iwd--~~~~~--~~~~~~~h~~~v~~l~~sp~~~  460 (498)
                      |.+|+  ..+++  .+..+.. .....+++|.|+.+
T Consensus       301 v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          301 ISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred             EEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence            99995  44654  3444443 24566778877544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=5.4e-22  Score=190.07  Aligned_cols=291  Identities=15%  Similarity=0.112  Sum_probs=194.1

Q ss_pred             cccCCCCceEE-----EEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC
Q 010883          126 PVDQTTSRAYV-----SQFSADGSLFVAGFQ-AS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS  197 (498)
Q Consensus       126 ~l~~h~~~v~~-----~~~s~dg~~la~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d  197 (498)
                      .+..|......     .+|||||++||.++. ++  .|.+||+.+++...   ....+...+..+.|+||++.|++++.+
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            44455555555     789999999999887 66  48889998874432   233444444567899999999999999


Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEE--EEEEcCCCCEEEEEe----------------------
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF--SLKFSTDGRELVAGS----------------------  253 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~s~~g~~l~~g~----------------------  253 (498)
                      +.|++||+.+++...+.....                ..+.  ...+++++++++...                      
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~----------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPA----------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCT----------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             CeEEEEECCCCcceeeeechh----------------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            999999999987654433221                1222  234589999887432                      


Q ss_pred             CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCC------CeEEEEcCccccCCCceeEEecccc--c
Q 010883          254 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHL--E  324 (498)
Q Consensus       254 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~--~  324 (498)
                      .+..|++||+.+++. ..+..+...+..+.|+ | +++.|+....+      ..|.++|+.     +.....+..+.  .
T Consensus       166 ~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~~  238 (388)
T 3pe7_A          166 PCCRLMRVDLKTGES-TVILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINED-----GTNMRKVKTHAEGE  238 (388)
T ss_dssp             CCEEEEEEETTTCCE-EEEEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETT-----SCCCEESCCCCTTE
T ss_pred             CcceEEEEECCCCce-EEeecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCC-----CCceEEeeeCCCCc
Confidence            346899999999865 4455677789999999 6 78877776653      367777774     33344444444  3


Q ss_pred             cEEEEEEcCCCCEEEEEeC-CC----cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc
Q 010883          325 GITFIDSRGDGRYLISNGK-DQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS  399 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (498)
                      .+..+.|+|||+.|+..+. ++    .|++||+.+...                                ..+..+.++.
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------------------------------~~l~~~~~~~  286 (388)
T 3pe7_A          239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------------------------------RQLTSMPACS  286 (388)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------------------------------EEEEEECCEE
T ss_pred             ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------------------------------EEEEcCCCce
Confidence            5778899999997765443 22    399999987431                                1222222210


Q ss_pred             eeEEEEEEEeccccCCCCcEEEEE---------ecCCeEEEEECCCCcEEEEeccCCC-----------CeeeeEEcCCC
Q 010883          400 VLRTLIRCHFSPVYSTGQKYIYTG---------SHDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQ  459 (498)
Q Consensus       400 ~~~~~~~~~~~~~~s~~~~~l~~g---------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~~sp~~  459 (498)
                         ..........|+|||+.|+..         ..+..|++||+.+++. ..+..|..           .+.+++|+|||
T Consensus       287 ---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg  362 (388)
T 3pe7_A          287 ---HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDD  362 (388)
T ss_dssp             ---EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred             ---eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCC
Confidence               000001112578899888754         4466899999988765 44555555           57889999999


Q ss_pred             CeEEEEe-CCCcEEEecCCC
Q 010883          460 PMLVSSS-WDGDVVRWEFPG  478 (498)
Q Consensus       460 ~~l~s~~-~Dg~i~iw~~~~  478 (498)
                      +.|+.++ .+|...+|.++-
T Consensus       363 ~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          363 KQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             SEEEEEECTTSSCEEEEEEC
T ss_pred             CEEEEEecCCCceeEEEEEC
Confidence            9777655 578777876653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2.6e-21  Score=187.20  Aligned_cols=213  Identities=15%  Similarity=0.114  Sum_probs=155.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----------eEEEE--EeecCCCceeEEEEEeCCCCCeEE----EE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----------WKIQK--DILAKSLRWTVTDTSLSPDQRHLV----YA  194 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~----------~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~----~~  194 (498)
                      ...++.+++++++.++++++.++ |+||+...-          ..+..  ......+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44689999999999999999887 889875311          00110  001112445799999999999999    67


Q ss_pred             ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883          195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL  273 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~  273 (498)
                      +.|+.|+|||+.++..........     ........+|...|.+++|+|+ +.+|++++.||.|++||++++.......
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRP-----FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCC-----SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred             CCCceEEEEEccccccCCcCCcce-----eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence            889999999987541100000000     0001122357889999999997 8899999999999999999987776777


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-------cccEEEEEEcCCCCEEEEEe-CCC
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------LEGITFIDSRGDGRYLISNG-KDQ  345 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~l~s~~-~dg  345 (498)
                      .|...|.+++|+ +++++|++|+.||.|++||++     +.....+..|       ...|.++.|++++.++++.+ .+|
T Consensus       190 ~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg  263 (434)
T 2oit_A          190 PSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG  263 (434)
T ss_dssp             CGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred             CCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence            899999999998 779999999999999999985     2333333332       34899999999887775433 343


Q ss_pred             ------cEEEEeCCCC
Q 010883          346 ------AIKLWDIRKM  355 (498)
Q Consensus       346 ------~i~iwd~~~~  355 (498)
                            .+++|++++.
T Consensus       264 ~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          264 TLETSPDVVMALLPKK  279 (434)
T ss_dssp             CSSSCCEEEEEECCCT
T ss_pred             ccCCCCceEEEEeccC
Confidence                  3899999874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=1e-21  Score=180.22  Aligned_cols=206  Identities=16%  Similarity=0.200  Sum_probs=153.9

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC--CC--e
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SP--I  199 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~--d~--~  199 (498)
                      ..+..|...|.+++|+|||++|++++ ++.|++||+.+ +.....  ....+...+.+++|+|++++|++++.  ++  .
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  111 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNNDHGISPDGALYAISDKVEFGKSA  111 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence            34566889999999999999999986 78999999998 643321  22223457889999999999999983  34  4


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCC-CeeeEEEeccCC
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEA-NKLSLRILAHTS  277 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~-~~~~~~~~~~~~  277 (498)
                      |.+|+..++.......                  ...+.+++|+|+++.|+ ++..++.+.+|++.. ......+..+..
T Consensus       112 l~~~~~~~~~~~~~~~------------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  173 (297)
T 2ojh_A          112 IYLLPSTGGTPRLMTK------------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG  173 (297)
T ss_dssp             EEEEETTCCCCEECCS------------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred             EEEEECCCCceEEeec------------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence            5555555544322111                  11488899999999887 677889889998532 233456667888


Q ss_pred             CeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----------C
Q 010883          278 DVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----------Q  345 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----------g  345 (498)
                      .+.+++|+ +++++|+.++ .++.+++|++..   .......+..|...+..++|+|++++|++++.+           +
T Consensus       174 ~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  249 (297)
T 2ojh_A          174 RNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV  249 (297)
T ss_dssp             CEEEEEEC-TTSSEEEEEECTTSSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred             ccccceEC-CCCCEEEEEecCCCCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence            99999998 6777776655 589999998752   344566777788889999999999999988765           5


Q ss_pred             cEEEEeCCCC
Q 010883          346 AIKLWDIRKM  355 (498)
Q Consensus       346 ~i~iwd~~~~  355 (498)
                      .|.+||+.+.
T Consensus       250 ~l~~~d~~~~  259 (297)
T 2ojh_A          250 RVQLMDMDGG  259 (297)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEecCCC
Confidence            6999999763

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1.2e-21  Score=184.58  Aligned_cols=282  Identities=13%  Similarity=0.086  Sum_probs=183.9

Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCceeccc
Q 010883          136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~~~~~  214 (498)
                      .+++++++.++++++.++.|.+||+.+++........  ....+..++|+|++++++++ ..++.|.+||+.+++.....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            4568889999999999999999999998665544322  11246789999999876554 46889999999988765443


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCee---eEEEeccCCCe
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------------DCIYVYDLEANKL---SLRILAHTSDV  279 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------------g~i~vwd~~~~~~---~~~~~~~~~~v  279 (498)
                      ......          ......+.+++|+|+|++|++++.+            +.|.+||+.+++.   +..+ .+...+
T Consensus        82 ~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~  150 (349)
T 1jmx_B           82 NLSSVP----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQV  150 (349)
T ss_dssp             ESCCST----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSC
T ss_pred             Eccccc----------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcc
Confidence            321100          0012246789999999999998865            8999999988543   2333 344568


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc------------------------cEEEEEEcCCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE------------------------GITFIDSRGDG  335 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~------------------------~v~~l~~~~~~  335 (498)
                      .+++|+ ++++ +++++.  .|.+||+.    .++....+..+..                        ....+++++++
T Consensus       151 ~~~~~s-~dg~-l~~~~~--~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  222 (349)
T 1jmx_B          151 YLMRAA-DDGS-LYVAGP--DIYKMDVK----TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  222 (349)
T ss_dssp             CCEEEC-TTSC-EEEESS--SEEEECTT----TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             cceeEC-CCCc-EEEccC--cEEEEeCC----CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence            899998 6777 555543  49999997    5555555443210                        23445565544


Q ss_pred             CEEEEEeCC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          336 RYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       336 ~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      ......... ..+..+|..+..                                   +..+.....    .......+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~----~~~~~~~~~s  263 (349)
T 1jmx_B          223 KQDPATADLLYGYLSVDLKTGK-----------------------------------THTQEFADL----TELYFTGLRS  263 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCC-----------------------------------EEEEEEEEC----SSCEEEEEEC
T ss_pred             cCCccccccceeEEEEeccCCc-----------------------------------EEecccccC----CCcceeeEec
Confidence            211100000 111123333211                                   111100000    0012344678


Q ss_pred             C-CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          415 T-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       415 ~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      | ++++++++  ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.+
T Consensus       264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             SSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             CCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            8 99999988  88999999999998888763 3457899999999988888889999999997764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=6.8e-21  Score=179.80  Aligned_cols=242  Identities=12%  Similarity=0.096  Sum_probs=181.9

Q ss_pred             eEEEEEeCCCCCeEEEEEC-------CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          178 TVTDTSLSPDQRHLVYASM-------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      .+..++|+|+++++++++.       ++.|.+||..+++.........                 .+..++|+|+|++++
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----------------~~~~~~~s~dg~~l~  104 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-----------------KPFGATINNTTQTLW  104 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-----------------CCCSEEEETTTTEEE
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-----------------CcceEEECCCCCEEE
Confidence            5788999999999888774       5689999999887655543211                 356789999999665


Q ss_pred             EE-eCCCeEEEEECCCCeeeEEEeccCCC---------eeEEEEeCCCCCEEEEee--CCCeEEEEcCccccCCCceeEE
Q 010883          251 AG-SSDDCIYVYDLEANKLSLRILAHTSD---------VNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGV  318 (498)
Q Consensus       251 ~g-~~dg~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~  318 (498)
                      ++ ..++.|.+||+.+++.+..+..+...         +.+++|+ ++++.+++++  .++.|.+||+.    .++.+..
T Consensus       105 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~  179 (353)
T 3vgz_A          105 FGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG----NIKLKTA  179 (353)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT----TTEEEEE
T ss_pred             EEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC----CCceEEE
Confidence            55 45799999999999988877654432         6889998 6777666665  47899999997    6777777


Q ss_pred             eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883          319 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH  398 (498)
Q Consensus       319 ~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (498)
                      +..+...+..++|+|++++|++++.++.|.+||+.+.                                  +.+..+...
T Consensus       180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~----------------------------------~~~~~~~~~  225 (353)
T 3vgz_A          180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN----------------------------------KILSRKKLL  225 (353)
T ss_dssp             ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT----------------------------------EEEEEEECC
T ss_pred             ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC----------------------------------eEEEEEEcC
Confidence            7656666889999999999999999999999999873                                  222222221


Q ss_pred             c--eeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEe-CCCcEEEe
Q 010883          399 S--VLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRW  474 (498)
Q Consensus       399 ~--~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw  474 (498)
                      .  .....    ...+|+|+++++++++. ++.|++||+.+++.+..+....  ...++|+|++++++.++ .++.|.+|
T Consensus       226 ~~~~~~~~----~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          226 DDGKEHFF----INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             CSSSCCCE----EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCCCccc----ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEE
Confidence            0  00111    22356779998877765 4999999999999988887543  36799999999655554 78999999


Q ss_pred             cCCCCCC
Q 010883          475 EFPGNGE  481 (498)
Q Consensus       475 ~~~~~~~  481 (498)
                      |+.++..
T Consensus       300 d~~~~~~  306 (353)
T 3vgz_A          300 DAKSYKV  306 (353)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCeE
Confidence            9876643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=7e-21  Score=178.09  Aligned_cols=271  Identities=9%  Similarity=0.054  Sum_probs=174.8

Q ss_pred             CCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeE-EEEEeecCCCceeEEEEEeCCCCCeEEEEECCC---eEEEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIV  203 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~-dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~---~i~iw  203 (498)
                      .+...+ +++|+|||++|++++. ++.|.+||+.++.. .....   .+..+..+++|+|++++|+++..++   .|.+|
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ---EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE---ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc---cCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence            345556 9999999997776665 88999999998865 33222   2233444499999999999555442   89999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCe-EEEEECCCCeee----EEEeccCC
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDC-IYVYDLEANKLS----LRILAHTS  277 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~-i~vwd~~~~~~~----~~~~~~~~  277 (498)
                      |+.+++........                 ..+.+++|+|+|++|+++ ..++. |.+|++.....+    ........
T Consensus       114 d~~~~~~~~~~~~~-----------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  176 (331)
T 3u4y_A          114 SFLKNKFISTIPIP-----------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT  176 (331)
T ss_dssp             ETTTTEEEEEEECC-----------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred             ECCCCCeEEEEECC-----------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence            99988765443211                 146899999999865554 55577 999998764433    12224456


Q ss_pred             CeeEEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCce---eEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 010883          278 DVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDI  352 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~  352 (498)
                      .+..++|+ ++++++ +++..++.|.+||+.    .++.   +..+.. ...+..++|+|+|++|+++. .++.|.+||+
T Consensus       177 ~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~----~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          177 RPFNITFT-PDGNFAFVANLIGNSIGILETQ----NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             SEEEEEEC-TTSSEEEEEETTTTEEEEEECS----STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             CccceEEC-CCCCEEEEEeCCCCeEEEEECC----CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            68999998 677754 555578999999997    4554   555553 36678899999999776554 5778999999


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee-EEEEEEEeccccCCCCcEEEEEec-CCeEE
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSH-DSCVY  430 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~  430 (498)
                      .+....                                .+..+...... .........++|+|||++|++++. ++.|.
T Consensus       251 ~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  298 (331)
T 3u4y_A          251 LSGTLS--------------------------------FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELK  298 (331)
T ss_dssp             TTTEEE--------------------------------EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCcee--------------------------------eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEE
Confidence            874320                                01111111000 000000012368889998877665 56999


Q ss_pred             EEECCCCcEEEEeccCCCCeeeeEEcCCC
Q 010883          431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQ  459 (498)
Q Consensus       431 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~  459 (498)
                      +||+.... +..+......-....++|+.
T Consensus       299 v~d~~~~~-~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          299 VFTISGKV-VGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             EEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred             EEEecCCc-ccceecccccCCeEEECCcc
Confidence            99997654 33443333322233444443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=210.16  Aligned_cols=283  Identities=12%  Similarity=0.090  Sum_probs=189.0

Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEeCCCCCeEEEEEC---------CCeEEEE
Q 010883          136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASM---------SPIVHIV  203 (498)
Q Consensus       136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~s~---------d~~i~iw  203 (498)
                      .++|+|||+++++ +.|+.|++||+.++......   ..+..   .+.+++|||||++|++++.         ++.|++|
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL---SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE---CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE---ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            6789999965555 46999999999988644322   22222   3889999999999999876         6899999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCCCe---
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDV---  279 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~v---  279 (498)
                      |+.+++......+.                 ..+.+++|+|||+.|+++. ++.|++||+.+++..... .++...|   
T Consensus        96 d~~~g~~~~~~~l~-----------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g  157 (719)
T 1z68_A           96 DLSNGEFVRGNELP-----------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG  157 (719)
T ss_dssp             ETTTTEECCSSCCC-----------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred             ECCCCccccceecC-----------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence            99998762111111                 1577899999999999886 789999999888764322 1222222   


Q ss_pred             --------------eEEEEeCCCCCEEEEeeCCC----------------------------------eEEEEcCccccC
Q 010883          280 --------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRCLNV  311 (498)
Q Consensus       280 --------------~~~~~~~~~~~~l~s~s~dg----------------------------------~i~vwd~~~~~~  311 (498)
                                    .+++|+ |+++.|++++.|.                                  .|++||+.    
T Consensus       158 ~~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~----  232 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT----  232 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----
T ss_pred             cccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----
Confidence                          489998 8899999887652                                  78899986    


Q ss_pred             CCcee--------EEeccccccEEEEEEcCCCCEEEEEeCC----CcEEEEe----CCCCCCccccccCcccccccceee
Q 010883          312 KGKPA--------GVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWD----IRKMSSNASCNLGFRSYEWDYRWM  375 (498)
Q Consensus       312 ~~~~~--------~~~~~~~~~v~~l~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~  375 (498)
                      .+...        ..+.+|...+..++|+||++++++....    ..|.+||    +.+........             
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~-------------  299 (719)
T 1z68_A          233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE-------------  299 (719)
T ss_dssp             CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-------------
T ss_pred             CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-------------
Confidence            33321        1234577889999999998777764432    2488888    65532211100             


Q ss_pred             cCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE--EecCC--eEEEEECCCCcEEEEeccCCCCee
Q 010883          376 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDS--CVYVYDLVSGEQVAALKYHTSPVR  451 (498)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~  451 (498)
                                       .....+...... .....+.|+|||+.|+.  ...+|  .|++||+.+++ ...+..+...+.
T Consensus       300 -----------------~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~  360 (719)
T 1z68_A          300 -----------------HIEESRTGWAGG-FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI  360 (719)
T ss_dssp             -----------------EEEECSSSCSSS-SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEE
T ss_pred             -----------------cccccCCceEcc-ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEE
Confidence                             000111100000 00014578889996654  33454  67888887776 455666666788


Q ss_pred             eeEEcCCCCeEEEEeCC-----CcEEEecCCC
Q 010883          452 DCSWHPSQPMLVSSSWD-----GDVVRWEFPG  478 (498)
Q Consensus       452 ~l~~sp~~~~l~s~~~D-----g~i~iw~~~~  478 (498)
                      .+.++ +++.|+..+.+     +.+++|.+..
T Consensus       361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            88877 88877766654     8899998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=8.2e-21  Score=179.96  Aligned_cols=280  Identities=12%  Similarity=0.102  Sum_probs=179.3

Q ss_pred             CCCEEEEEE----CCCeEEEEECC--CCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC----CeEEEEECCC--Cc
Q 010883          142 DGSLFVAGF----QASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGS--GT  209 (498)
Q Consensus       142 dg~~la~~~----~dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d----~~i~iwd~~~--~~  209 (498)
                      ...++++|+    .++.|.+|.++  ++........   +...+..++|+|++++|++++.+    +.|.+|++..  ++
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~   88 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT   88 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence            334566664    35689998764  4533222222   34467889999999999999886    7999998865  44


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEE---ec-----------
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRI---LA-----------  274 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~---~~-----------  274 (498)
                      .........              +...+..+++  ++++|++++ .++.|.+|++.....+..+   ..           
T Consensus        89 ~~~~~~~~~--------------~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~  152 (361)
T 3scy_A           89 LHLLNTQKT--------------MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ  152 (361)
T ss_dssp             EEEEEEEEC--------------SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred             EEEeeEecc--------------CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence            332222111              1124666777  788777776 5789999999754332111   11           


Q ss_pred             cCCCeeEEEEeCCCCCEEEE-eeCCCeEEEEcCccccCC--Cc-e------eEEeccccccEEEEEEcCCCCEEEEEe-C
Q 010883          275 HTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVK--GK-P------AGVLMGHLEGITFIDSRGDGRYLISNG-K  343 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~--~~-~------~~~~~~~~~~v~~l~~~~~~~~l~s~~-~  343 (498)
                      +...+.+++|+ ++++++++ ...++.|.+|++......  .+ .      ......+...+..++|+|||+++++++ .
T Consensus       153 ~~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  231 (361)
T 3scy_A          153 TMPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI  231 (361)
T ss_dssp             SSCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence            12345789998 77875554 445899999988632110  01 1      122233445678999999999887777 6


Q ss_pred             CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-eEEEEEEEeccccCCCCcEEEE
Q 010883          344 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       344 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      ++.|.+||+.+...                                ..+..+..... ....    ..++|+|||++|++
T Consensus       232 ~~~v~v~~~~~g~~--------------------------------~~~~~~~~~~~~~~~~----~~i~~spdg~~l~v  275 (361)
T 3scy_A          232 GGTVIAFRYADGML--------------------------------DEIQTVAADTVNAQGS----GDIHLSPDGKYLYA  275 (361)
T ss_dssp             TCEEEEEEEETTEE--------------------------------EEEEEEESCSSCCCCE----EEEEECTTSSEEEE
T ss_pred             CCeEEEEEecCCce--------------------------------EEeEEEecCCCCCCCc----ccEEECCCCCEEEE
Confidence            89999999875211                                11111111110 0011    23467889999977


Q ss_pred             EecC--CeEEEEECC--CCc--EEEEeccCCCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCC
Q 010883          423 GSHD--SCVYVYDLV--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG  478 (498)
Q Consensus       423 g~~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~  478 (498)
                      +..+  +.|.+|++.  +++  .+..+.. ...+.+++|+|+|++|++++ .++.|.+|+++.
T Consensus       276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            7665  899999985  454  4445544 55788999999999888887 678999976653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=2.2e-19  Score=170.11  Aligned_cols=281  Identities=12%  Similarity=0.146  Sum_probs=179.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEECC----CeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEE
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV  203 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~d----g~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iw  203 (498)
                      +......++|+|||++|++++.+    +.|.+|+++.. ..+........+...+..+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56677889999999999999876    79999988652 223332222223345777888  888888777 57899999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe-------ee------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK-------LS------  269 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~-------~~------  269 (498)
                      ++................+.  .......+...+.+++|+|+|++|++++ .++.|.+|++....       ..      
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGS--GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCC--CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCC--CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            99754332211111001110  0001112233578999999999776665 47899999887543       11      


Q ss_pred             EEEeccCCCeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCce--eEEe---ccccccEEEEEEcCCCCEEEEEeC
Q 010883          270 LRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKP--AGVL---MGHLEGITFIDSRGDGRYLISNGK  343 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~--~~~~---~~~~~~v~~l~~~~~~~~l~s~~~  343 (498)
                      .....+...+..++|+ ++++++++++ .++.|.+||+.    .+..  +..+   ..+......++|+|||++|+++..
T Consensus       204 ~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYA----DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEE----TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             ceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEec----CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence            1122445667899998 7888777666 68999999987    3322  2222   233345789999999999877665


Q ss_pred             C--CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883          344 D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       344 d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  421 (498)
                      +  +.|.+|++.......                              ..+..+....       ....++|+|||++|+
T Consensus       279 ~~~~~i~v~~~~~~~g~~------------------------------~~~~~~~~g~-------~~~~~~~spdg~~l~  321 (361)
T 3scy_A          279 LKADGVAIFKVDETNGTL------------------------------TKVGYQLTGI-------HPRNFIITPNGKYLL  321 (361)
T ss_dssp             SSSCEEEEEEECTTTCCE------------------------------EEEEEEECSS-------CCCEEEECTTSCEEE
T ss_pred             CCCCEEEEEEEcCCCCcE------------------------------EEeeEecCCC-------CCceEEECCCCCEEE
Confidence            4  889999986311000                              1122222100       012336788999999


Q ss_pred             EEe-cCCeEEEE--ECCCCcEEEEec-cCCCCeeeeEEc
Q 010883          422 TGS-HDSCVYVY--DLVSGEQVAALK-YHTSPVRDCSWH  456 (498)
Q Consensus       422 ~g~-~dg~i~iw--d~~~~~~~~~~~-~h~~~v~~l~~s  456 (498)
                      +++ .++.|.+|  |..+++...... .+...+.|+.|.
T Consensus       322 ~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          322 VACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            888 57899996  555677655432 345678888885

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=2.6e-20  Score=175.52  Aligned_cols=267  Identities=13%  Similarity=0.146  Sum_probs=169.0

Q ss_pred             CCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEE
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVD  204 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd  204 (498)
                      .+......++|+|||+ |++++.   ++.|.+|++.++.. ........+...+..++|+|++++|++++ .++.|.+|+
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            3456677899999999 555443   68999999977642 22222122344688899999999999888 678999999


Q ss_pred             CC-CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeE--EEec-cCCCe
Q 010883          205 VG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSL--RILA-HTSDV  279 (498)
Q Consensus       205 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~~--~~~~-~~~~v  279 (498)
                      +. ++.............+    +. ...+...+.+++|+|+|+++++...++.|.+|++. +++...  .+.. ....+
T Consensus       115 ~~~~g~~~~~~~~~~~~~~----p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p  189 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHG----PR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP  189 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCC----SS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred             eCCCCCeeecceeecCCCC----CC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence            95 3333222221110000    00 11123358899999999966666678899999998 454322  2222 23367


Q ss_pred             eEEEEeCCCCCEEEE-eeCCCeEEEEcCccccCCCceeEEecccc------ccEEEEEEcCCCCEE-EEEeCCCcEEEEe
Q 010883          280 NTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYL-ISNGKDQAIKLWD  351 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l-~s~~~dg~i~iwd  351 (498)
                      ..++|+ ++++++++ +..++.|.+|++.........+..+....      ..+..++|+|||++| ++...++.|.+|+
T Consensus       190 ~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~  268 (347)
T 3hfq_A          190 RHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA  268 (347)
T ss_dssp             EEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred             ceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence            889998 77875554 56789999999862110111222222222      348899999999987 4556689999999


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-CeEE
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVY  430 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~  430 (498)
                      +.....                               ...+..+..+...      ...++|+|||++|++++.+ +.|.
T Consensus       269 ~~~~g~-------------------------------~~~~~~~~~~~~~------~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          269 VTADGH-------------------------------LTLIQQISTEGDF------PRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             ECGGGC-------------------------------EEEEEEEECSSSC------CCEEEECTTSSEEEEEETTTTEEE
T ss_pred             ECCCCc-------------------------------EEEeEEEecCCCC------cCeEEECCCCCEEEEEEcCCCcEE
Confidence            873110                               0222222221110      1233678899999888765 8999


Q ss_pred             EE--ECCCCcEE
Q 010883          431 VY--DLVSGEQV  440 (498)
Q Consensus       431 iw--d~~~~~~~  440 (498)
                      +|  |..+++..
T Consensus       312 v~~~d~~tg~l~  323 (347)
T 3hfq_A          312 LYARDLTSGKLS  323 (347)
T ss_dssp             EEEECTTTCCEE
T ss_pred             EEEEeCCCCeEE
Confidence            99  55566654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=1.6e-20  Score=175.89  Aligned_cols=247  Identities=14%  Similarity=0.055  Sum_probs=176.1

Q ss_pred             ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCC--CceeEEEEEeCCCCCeEEEEE------------CC
Q 010883          133 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYAS------------MS  197 (498)
Q Consensus       133 ~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~s------------~d  197 (498)
                      .+..++|+|||++++ ++..++.|.+||+.+++.+........  +...+..++|+|++++|++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            477899999998765 455678999999998866554432210  122567899999999999886            57


Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  277 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  277 (498)
                      +.|.+||+.+++........                 ..+.+++|+|+|++|+++  ++.|++||+.+++....+..+..
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~  175 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW  175 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred             ceEEEEECCCCcEEEEEeCC-----------------CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence            99999999887765433221                 146678999999988887  67899999999988777654431


Q ss_pred             CeeEEEEeCCCCCEEEEee-CCC-----------------------eEEEEcCccccCCCce-eEEeccccccEEEEEEc
Q 010883          278 DVNTVCFGDESGHLIYSGS-DDN-----------------------LCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSR  332 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s-~dg-----------------------~i~vwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~  332 (498)
                       ...+.|+ +++..++..+ .++                       .|.+||+.    .++. ...+..+...+..++|+
T Consensus       176 -~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s  249 (337)
T 1pby_B          176 -EAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFSTAVN  249 (337)
T ss_dssp             -TTTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEEEEC
T ss_pred             -CCCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC----CCCceEeecCCCCCceeeEEEC
Confidence             1123676 5555444433 333                       46899987    4433 23344556678899999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                      |++++++++  ++.|.+||+.+.                                  +.+..+.....       ...++
T Consensus       250 ~dg~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~~-------~~~~~  286 (337)
T 1pby_B          250 PAKTRAFGA--YNVLESFDLEKN----------------------------------ASIKRVPLPHS-------YYSVN  286 (337)
T ss_dssp             TTSSEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC-------CCEEE
T ss_pred             CCCCEEEEe--CCeEEEEECCCC----------------------------------cCcceecCCCc-------eeeEE
Confidence            999999888  789999999763                                  23333332211       12336


Q ss_pred             cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883          413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT  447 (498)
Q Consensus       413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~  447 (498)
                      |+|+|++|++++.++.|++||+.+++.+..+..+.
T Consensus       287 ~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             ECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            77899999999999999999999999988886543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=3.7e-20  Score=175.58  Aligned_cols=289  Identities=13%  Similarity=0.085  Sum_probs=180.8

Q ss_pred             EEEEEECC--CeEEEEEC--CCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC-CCceecccccccc
Q 010883          145 LFVAGFQA--SQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEI  219 (498)
Q Consensus       145 ~la~~~~d--g~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~-~~~~~~~~~~~~~  219 (498)
                      +|++|+..  +.|.+|++  .++...............+..++|+|++++|++++.+ .|.+|++. +++......... 
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-
Confidence            35566653  56887765  4553222111111222357789999999999998888 99999997 665433221110 


Q ss_pred             ccCccccccCCCCceecEEEEEEcCCCCE--EEEEe-------------CCCeEEEEECC-CCeeeEEEe----ccCCCe
Q 010883          220 HDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-------------SDDCIYVYDLE-ANKLSLRIL----AHTSDV  279 (498)
Q Consensus       220 ~~~~~~~~~~~~~h~~~i~~~~~s~~g~~--l~~g~-------------~dg~i~vwd~~-~~~~~~~~~----~~~~~v  279 (498)
                       .          +   .+.+++|+|+|++  ++++.             .++.+.+|++. .++....+.    .+...+
T Consensus        82 -~----------g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~  147 (365)
T 1jof_A           82 -G----------G---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI  147 (365)
T ss_dssp             -C----------S---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred             -C----------C---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence             0          0   1334789999994  44543             68999999997 455544333    245679


Q ss_pred             eEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCce--eEEec--cccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 010883          280 NTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKP--AGVLM--GHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIR  353 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~--~~~~~--~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~  353 (498)
                      .+++|+ +++++|++++ .++.|++||+..   .++.  +..+.  .|...+..++|+|||++|++++. ++.|.+|++.
T Consensus       148 ~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          148 HGMVFD-PTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EEEEEC-TTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEC-CCCCEEEEEcCCCCEEEEEEECC---CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            999998 7888777765 468999999861   1222  22332  23567899999999999887775 6889999875


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEE---EEEEEeccc-cCCCCcEEEEEecCC-
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRT---LIRCHFSPV-YSTGQKYIYTGSHDS-  427 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~-~s~~~~~l~~g~~dg-  427 (498)
                      .........         .                 +.+..+... .....   .......++ |+|||++|++++.+. 
T Consensus       224 ~~~g~~~~~---------~-----------------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          224 PATHMPVYT---------H-----------------HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             TTTCCEEEE---------E-----------------EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             CCCCcEEEc---------c-----------------ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            311000000         0                 000000000 00000   000112346 788999988876532 


Q ss_pred             -----eEEEEECC-CCcEEE---EeccCCCCeeeeEEcC---CCCeEEEEeCC-CcEEEecCCCC
Q 010883          428 -----CVYVYDLV-SGEQVA---ALKYHTSPVRDCSWHP---SQPMLVSSSWD-GDVVRWEFPGN  479 (498)
Q Consensus       428 -----~i~iwd~~-~~~~~~---~~~~h~~~v~~l~~sp---~~~~l~s~~~D-g~i~iw~~~~~  479 (498)
                           .|.+|++. +++...   .+..+...+..++|+|   ||++|++++.+ +.|.+|++...
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                 89999996 666543   2334555678899999   89999998864 89999998764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=3.7e-21  Score=194.48  Aligned_cols=234  Identities=10%  Similarity=0.058  Sum_probs=168.5

Q ss_pred             ceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883          176 RWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS  254 (498)
Q Consensus       176 ~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~  254 (498)
                      ..+|.+++|+|||+.||+++. ||+++||++.+++...+..                .+...+..++|+|| +.+++++.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~----------------~~~~~~~~~~~spd-~~l~~~~~   83 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR----------------EPINSVLDPHYGVG-RVILVRDV   83 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS----------------SCCSEECEECTTCS-EEEEEEEC
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec----------------ccccccccccCCCC-eEEEEecc
Confidence            347999999999999999887 9999999987766544332                12236889999999 77777765


Q ss_pred             ---CCeEEEEECCC--CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          255 ---DDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       255 ---dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                         +....+|.+..  ......+.. ...+...+|+|.....+++.+.++.+.+||+.    .++..... .+..  .++
T Consensus        84 ~~g~~~~~l~~~~~~~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~----~g~~~~l~-~~~~--~~~  155 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPGEEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALD----GGGLRELA-RLPG--FGF  155 (582)
T ss_dssp             STTSCCEEEEEEETTSTTCCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEE----TTEEEEEE-EESS--CEE
T ss_pred             CCCCcceEEEEEeccCCCccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEcc----CCcEEEee-cCCC--ceE
Confidence               44445544432  211223332 23445678874444444555555555699986    44443333 3333  789


Q ss_pred             EEcCCCCEEEEEeCC----CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883          330 DSRGDGRYLISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI  405 (498)
Q Consensus       330 ~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (498)
                      +|+|||++|++++.+    +.|++||+.+..                                   ...+..+...    
T Consensus       156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----------------------------------~~~l~~~~~~----  196 (582)
T 3o4h_A          156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----------------------------------LRVFDSGEGS----  196 (582)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEEEEETTTCC-----------------------------------CEEECCSSCE----
T ss_pred             EECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----------------------------------ceEeecCCCc----
Confidence            999999999988877    789999988632                                   2233344321    


Q ss_pred             EEEeccccCCCCcEEEEEecCC--eEEEEECCCCcEEEEeccCCCCeeeeE--------EcCCCCeEEEEeCCCcEEEec
Q 010883          406 RCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCS--------WHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       406 ~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~--------~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                        ...++|||||++|+++..++  .|++||+.+++.. .+..|...+..++        |+|||.++++++.||.+++|+
T Consensus       197 --~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          197 --FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             --EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             --cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence              25568899999999888888  8999999999888 7788888888888        999999999999999999999


Q ss_pred             C
Q 010883          476 F  476 (498)
Q Consensus       476 ~  476 (498)
                      +
T Consensus       274 ~  274 (582)
T 3o4h_A          274 D  274 (582)
T ss_dssp             T
T ss_pred             E
Confidence            9

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=1.3e-20  Score=182.22  Aligned_cols=185  Identities=11%  Similarity=0.047  Sum_probs=134.7

Q ss_pred             CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCC
Q 010883          153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG  232 (498)
Q Consensus       153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (498)
                      +.+++|+....          .....++.+++++++.++++++.++ +++|+...-...... .........+.......
T Consensus        23 ~~vri~~~~~~----------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   90 (434)
T 2oit_A           23 KKVRIFDSPEE----------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP-GDDPNKIVDKVQGLLVP   90 (434)
T ss_dssp             CEEECSCCCSS----------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT-TCCTTCEEECCCCEEEC
T ss_pred             eeEEecCCccc----------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc-ccCcccccccCcccccc
Confidence            56888765321          1122578899999999999999887 889875421100000 00000000000000012


Q ss_pred             ceecEEEEEEcCCCCEEE----EEeCCCeEEEEECCCC--------ee---eEEEeccCCCeeEEEEeCCCCCEEEEeeC
Q 010883          233 YSFGIFSLKFSTDGRELV----AGSSDDCIYVYDLEAN--------KL---SLRILAHTSDVNTVCFGDESGHLIYSGSD  297 (498)
Q Consensus       233 h~~~i~~~~~s~~g~~l~----~g~~dg~i~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  297 (498)
                      +...|.+++|+|+|++|+    +|+.|+.|++||+.++        +.   ...+.+|...|.+++|+|.++++|++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            445799999999999999    7888999999998764        22   33445799999999999655899999999


Q ss_pred             CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          298 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       298 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      ||+|++||++    .........+|...|.+++|+|+|++|++|+.||.|++||++
T Consensus       171 Dg~v~iwD~~----~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          171 DGSIAVLQVT----ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             TSCEEEEEES----SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCeEEEEEcC----CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            9999999998    555566667789999999999999999999999999999997

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=5.8e-21  Score=198.09  Aligned_cols=289  Identities=11%  Similarity=0.018  Sum_probs=184.7

Q ss_pred             ceEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          133 RAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      .|.+++|||||++||+++.         ++.|++||+.+++.+... .   ....+..++|||||+.|+++. ++.|++|
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~  135 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-E---LPRPIQYLCWSPVGSKLAYVY-QNNIYLK  135 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-C---CCSSBCCEEECSSTTCEEEEE-TTEEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-e---cCcccccceECCCCCEEEEEE-CCeEEEE
Confidence            4889999999999998876         689999999988441101 1   123588899999999999986 7899999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCcee---------cEEEEEEcCCCCEEEEEeCCC------------------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSF---------GIFSLKFSTDGRELVAGSSDD------------------  256 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~~s~~g~~l~~g~~dg------------------  256 (498)
                      ++.+++...+.....  ....+     .|+..         ...+++|+|||++|++++.|.                  
T Consensus       136 ~~~~g~~~~l~~~~~--~~~v~-----~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~  208 (719)
T 1z68_A          136 QRPGDPPFQITFNGR--ENKIF-----NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR  208 (719)
T ss_dssp             SSTTSCCEECCCCCB--TTTEE-----ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred             eCCCCCcEEEecCCC--cCCeE-----cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence            998887644321110  00000     01111         125899999999999987652                  


Q ss_pred             ----------------eEEEEECCCCeee--EE------EeccCCCeeEEEEeCCCCCEEEEeeCC----CeEEEEc---
Q 010883          257 ----------------CIYVYDLEANKLS--LR------ILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWD---  305 (498)
Q Consensus       257 ----------------~i~vwd~~~~~~~--~~------~~~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~vwd---  305 (498)
                                      .|++||+.+++..  ..      +..|...+..++|+ ++++++++....    ..|.+||   
T Consensus       209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~  287 (719)
T 1z68_A          209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFRE  287 (719)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred             ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccC
Confidence                            7899999987652  12      23577789999998 567777764432    2488889   


Q ss_pred             -CccccCCCceeEEe----ccccccEE-----EEEEcCCCCEEEE--EeCCC--cEEEEeCCCCCCccccccCccccccc
Q 010883          306 -RRCLNVKGKPAGVL----MGHLEGIT-----FIDSRGDGRYLIS--NGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWD  371 (498)
Q Consensus       306 -~~~~~~~~~~~~~~----~~~~~~v~-----~l~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~  371 (498)
                       +.    .++....+    ..|...+.     .+.|+|||+.|+.  ...++  .|.+||+....               
T Consensus       288 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---------------  348 (719)
T 1z68_A          288 DWQ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---------------  348 (719)
T ss_dssp             SSS----SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---------------
T ss_pred             CCC----CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---------------
Confidence             65    33333233    35566665     7899999996554  44555  46666765422               


Q ss_pred             ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-----CCeEEEEECCC--Cc-EEEEe
Q 010883          372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----DSCVYVYDLVS--GE-QVAAL  443 (498)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg~i~iwd~~~--~~-~~~~~  443 (498)
                                          ...+..+...  +...    .++ +++.|+..+.     ++.+++|.+..  +. ....+
T Consensus       349 --------------------~~~lt~~~~~--v~~~----~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l  401 (719)
T 1z68_A          349 --------------------AIQITSGKWE--AINI----FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV  401 (719)
T ss_dssp             --------------------CEECSCSSSC--EEEE----EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES
T ss_pred             --------------------eEecccCceE--EEEE----EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec
Confidence                                1112211110  1111    222 4555555544     47788887754  42 23344


Q ss_pred             c----cCCCCeeeeEEcCCCCeEEE-EeCC--CcEEEecCCCCC
Q 010883          444 K----YHTSPVRDCSWHPSQPMLVS-SSWD--GDVVRWEFPGNG  480 (498)
Q Consensus       444 ~----~h~~~v~~l~~sp~~~~l~s-~~~D--g~i~iw~~~~~~  480 (498)
                      .    +|...+..+.|+|++++++. ++.+  ..+.+|++.+++
T Consensus       402 ~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          402 TCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             STTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             cCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            3    25667889999999997764 4333  468899886654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=2.2e-20  Score=179.24  Aligned_cols=293  Identities=13%  Similarity=0.062  Sum_probs=184.3

Q ss_pred             CceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883          132 SRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~  208 (498)
                      ..+..++|||||++||.....   ..|.+|++.+++... .  ..........+.|+|||++|++++.++.|.+|++.++
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l--~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~  112 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-L--TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL  112 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-C--CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-e--ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence            336778999999998877553   368899998874322 1  2222222233789999999999999999999999988


Q ss_pred             ceeccccccccc--cC--ccccccCCCCceecEEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          209 TMESLANVTEIH--DG--LDFSAADDGGYSFGIFSLKFSTDGRELVAG-----SSDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       209 ~~~~~~~~~~~~--~~--~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-----~~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      +...+.......  .+  +.+.... ..-......+.|+|+++.++..     ..+..|++||+.+++... +..+...+
T Consensus       113 ~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-~~~~~~~~  190 (396)
T 3c5m_A          113 EEQVIYTVDEEWKGYGTWVANSDCT-KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV-IHQDTAWL  190 (396)
T ss_dssp             CEEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE-EEEESSCE
T ss_pred             CcEEEEecccccCCCCCEEEeccCC-ccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe-eccCCccc
Confidence            754443321100  00  0000000 0000000013578888877654     356789999999887644 34677789


Q ss_pred             eEEEEeCCCCCEEEEeeCC------CeEEEEcCccccCCCceeEEeccc--cccEEEEEEcCCCCEEEEEeCC-----Cc
Q 010883          280 NTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKD-----QA  346 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~~~d-----g~  346 (498)
                      ..+.|+|.++..|+..+.+      ..|.+||+.    ... ...+..+  ...+..+.|+|||++|+..+.+     +.
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~----~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  265 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED----GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV  265 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT----SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECC----CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence            9999984367666655543      358888875    222 2333333  2357889999999988776544     44


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC-CCcEEEEEe-
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGS-  424 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~-  424 (498)
                      |++||+.+...                                ..+..+.+      . .    +.|+| ||+++++++ 
T Consensus       266 l~~~d~~~g~~--------------------------------~~l~~~~~------~-~----~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          266 IYKANPETLEN--------------------------------EEVMVMPP------C-S----HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             EEEECTTTCCE--------------------------------EEEEECCS------E-E----EEEECSSSSEEEEEEC
T ss_pred             EEEEECCCCCe--------------------------------EEeeeCCC------C-C----CCccCCCCceEEEecC
Confidence            99999876321                                11111111      0 0    46777 999888765 


Q ss_pred             ---------------cCCeEEEEECCCCcEEEEeccCCC-----------CeeeeEEcCCCCeEEEEeC-CCcEEEecCC
Q 010883          425 ---------------HDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQPMLVSSSW-DGDVVRWEFP  477 (498)
Q Consensus       425 ---------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~~sp~~~~l~s~~~-Dg~i~iw~~~  477 (498)
                                     .++.|++||+.+++.. .+..+..           .+..++|+|+|+.|+.++. ++...+|.++
T Consensus       303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                           3478999999887653 3444444           2677899999998877664 5666666654


Q ss_pred             C
Q 010883          478 G  478 (498)
Q Consensus       478 ~  478 (498)
                      .
T Consensus       382 ~  382 (396)
T 3c5m_A          382 V  382 (396)
T ss_dssp             C
T ss_pred             E
Confidence            3

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=4.3e-19  Score=184.18  Aligned_cols=291  Identities=11%  Similarity=0.079  Sum_probs=181.0

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCc---e--eEEEEEeCCCCCeEEEEECC---------C
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR---W--TVTDTSLSPDQRHLVYASMS---------P  198 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~--~v~~~~~sp~~~~l~~~s~d---------~  198 (498)
                      ....++|+|||++++++  |+.|++||+.++..... .  ..+.   .  ....++|||||++|++++.+         +
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-L--ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-E--CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-E--echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            45688999999999886  89999999999865432 2  2222   1  22458899999999998875         5


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS  277 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~  277 (498)
                      .+.+||+.+++...+..                 |...+..++|||||+.||.+. ++.|++||+.+++..+.. .++..
T Consensus        93 ~~~~~d~~~~~~~~l~~-----------------~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~  154 (740)
T 4a5s_A           93 SYDIYDLNKRQLITEER-----------------IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED  154 (740)
T ss_dssp             EEEEEETTTTEECCSSC-----------------CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT
T ss_pred             EEEEEECCCCcEEEccc-----------------CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc
Confidence            67799999987654322                 233689999999999999885 679999999887753311 12222


Q ss_pred             Ce-----------------eEEEEeCCCCCEEEEeeCCC------------------------------------eEEEE
Q 010883          278 DV-----------------NTVCFGDESGHLIYSGSDDN------------------------------------LCKVW  304 (498)
Q Consensus       278 ~v-----------------~~~~~~~~~~~~l~s~s~dg------------------------------------~i~vw  304 (498)
                      .+                 ..+.|+ |+++.|+.++.|.                                    .|++|
T Consensus       155 ~~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          155 IIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             ceecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            22                 358898 8899888875322                                    47778


Q ss_pred             cCccccCCCc--eeEEec------cccccEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCCCccccccCcccccccc
Q 010883          305 DRRCLNVKGK--PAGVLM------GHLEGITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDY  372 (498)
Q Consensus       305 d~~~~~~~~~--~~~~~~------~~~~~v~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  372 (498)
                      |+.... .+.  ....+.      +|...+..++|+|||+.++....    +..|.+||+.+......+..         
T Consensus       234 d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~---------  303 (740)
T 4a5s_A          234 NTDSLS-SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV---------  303 (740)
T ss_dssp             ETTSCC-SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG---------
T ss_pred             ECCCCC-CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE---------
Confidence            876200 031  222333      36777999999999997665432    33699999887541000000         


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE-EEec-C--CeEEEEECCCCcEEEEeccCCC
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSH-D--SCVYVYDLVSGEQVAALKYHTS  448 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~-d--g~i~iwd~~~~~~~~~~~~h~~  448 (498)
                                      ...+.. ..+...... .....|.|||||+.|+ ..+. +  ..|++||+.+++... +.....
T Consensus       304 ----------------~~~l~~-~~~~~~v~~-~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~  364 (740)
T 4a5s_A          304 ----------------ARQHIE-MSTTGWVGR-FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTW  364 (740)
T ss_dssp             ----------------GGCEEE-ECSSSCSSS-SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSS
T ss_pred             ----------------EEEeee-ccCCceEcc-CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCE
Confidence                            000000 111100000 0012467899999877 6654 3  468999998776554 443455


Q ss_pred             CeeeeEEcCCCCeEEEEeCC-----CcEEEecCC
Q 010883          449 PVRDCSWHPSQPMLVSSSWD-----GDVVRWEFP  477 (498)
Q Consensus       449 ~v~~l~~sp~~~~l~s~~~D-----g~i~iw~~~  477 (498)
                      .|..+.+ +|++.|+..+..     +...||.++
T Consensus       365 ~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          365 EVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             CEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence            5665542 446654444332     344555443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=1.1e-18  Score=164.75  Aligned_cols=282  Identities=12%  Similarity=0.026  Sum_probs=187.2

Q ss_pred             CCCEEEEEE------CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----------CCeEEEEEC
Q 010883          142 DGSLFVAGF------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDV  205 (498)
Q Consensus       142 dg~~la~~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----------d~~i~iwd~  205 (498)
                      +++++++..      .|+.|.+||..+++.+....   ....+  .++|+||+++++++..          ++.|.+||.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~---~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP---TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE---CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEec---CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            555555543      36799999999987655432   22333  8999999999998863          568999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEE-EeccCCCeeEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDVNTV  282 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~  282 (498)
                      .+.+............          .+......++|+|||++|+++..  ++.|.+||+.+++.+.. +. ... ...+
T Consensus        89 ~t~~~~~~i~~~~~~~----------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v  156 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRV----------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSV  156 (361)
T ss_dssp             TTCCEEEEEEECTTBC----------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEE
T ss_pred             cCCcEEEEEEcCcccc----------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-ccee
Confidence            8877655443321100          01113556899999999998874  57899999999988776 43 322 2234


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE------EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG------VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      .+.|.....+++.+.||.+.+|+...   .++...      .+.....++ .+.+++++..++..+.++.|.++|+....
T Consensus       157 ~~~p~~~~~~~~~~~dg~~~~v~~~~---~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~  232 (361)
T 2oiz_A          157 IPQPNRPRSFMTICGDGGLLTINLGE---DGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE  232 (361)
T ss_dssp             EECTTSSSEEEEEETTSSEEEEEECT---TSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred             EEcCCCCeeEEEECCCCcEEEEEECC---CCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence            55555557888999999999998751   123221      111122222 33345677777777888999999986532


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc----eeEEEEEEEeccccCCCCcEEEEEec-------
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----VLRTLIRCHFSPVYSTGQKYIYTGSH-------  425 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~g~~-------  425 (498)
                      ..                                .+..+....    ............+++|+++.++++..       
T Consensus       233 ~~--------------------------------~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          233 VK--------------------------------VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             CE--------------------------------EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             ce--------------------------------ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence            11                                011110000    00000000011256778888887654       


Q ss_pred             ----CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          426 ----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       426 ----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                          .+.|.+||+.+++.+.++..+.  +.+++|+|||++|++++. +.|.+||..++
T Consensus       281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence                3489999999999999998776  999999999999998887 99999999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=1.6e-17  Score=157.44  Aligned_cols=249  Identities=10%  Similarity=0.070  Sum_probs=163.9

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEeecCCCceeEEEEEeCCCCCe--EEEEE-------------
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYAS-------------  195 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~s-------------  195 (498)
                      ..+..++|+|||++|++++.+ .|.+|++. +++....... ... +.+..++|+|+|++  ++++.             
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            467789999999999999888 99999997 6754322111 111 12456899999995  44442             


Q ss_pred             CCCeEEEEECC-CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCeee--E
Q 010883          196 MSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE-ANKLS--L  270 (498)
Q Consensus       196 ~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~-~~~~~--~  270 (498)
                      .++.+.+|++. .++..........            .+...+.+++|+|||++|+++.. ++.|++||+. +++..  .
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~  184 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEY------------QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEEC------------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEe------------CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence            68899999997 3543322111000            12236889999999998887764 6799999998 67653  2


Q ss_pred             EEe--ccCCCeeEEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCCcee------EEec----cccc------cEEEEE-
Q 010883          271 RIL--AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPA------GVLM----GHLE------GITFID-  330 (498)
Q Consensus       271 ~~~--~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~------~~~~----~~~~------~v~~l~-  330 (498)
                      .+.  .|...+..++|+ ++++++++++. ++.|.+|++...  .++..      ..+.    +|..      .+..++ 
T Consensus       185 ~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  261 (365)
T 1jof_A          185 SVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPA--THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             EEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred             eEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCC--CCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence            232  245678999998 78888877764 789999986421  22221      1121    1222      588999 


Q ss_pred             EcCCCCEEEEEeCCC------cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE---EEccCcee
Q 010883          331 SRGDGRYLISNGKDQ------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA---TYKGHSVL  401 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  401 (498)
                      |+|||++|+++..+.      .|.+|++....                                 ....   ....+.. 
T Consensus       262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g---------------------------------~~~~~~~~~~~~~~-  307 (365)
T 1jof_A          262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCG---------------------------------SIEKQLFLSPTPTS-  307 (365)
T ss_dssp             ECTTSSEEEEEEEESSTTSCCEEEEEEECTTS---------------------------------CEEEEEEEEECSSC-
T ss_pred             ECCCCCEEEEECCCCCCCCCCeEEEEEECCCC---------------------------------CEEEeeeeeecCCC-
Confidence            999999988766432      79999986311                                 1110   0111100 


Q ss_pred             EEEEEEEeccccCC---CCcEEEEEecC-CeEEEEECCCC
Q 010883          402 RTLIRCHFSPVYST---GQKYIYTGSHD-SCVYVYDLVSG  437 (498)
Q Consensus       402 ~~~~~~~~~~~~s~---~~~~l~~g~~d-g~i~iwd~~~~  437 (498)
                           .....+|+|   ||++|++++.+ +.|.+|++...
T Consensus       308 -----~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          308 -----GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             -----CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             -----CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                 012346788   89999999875 89999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=1.5e-17  Score=155.17  Aligned_cols=245  Identities=13%  Similarity=0.151  Sum_probs=176.1

Q ss_pred             eeEEEEEeCCCCCeEEEEECC------------------------CeEEEEECCCCceeccccccccccCccccccCCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMS------------------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG  232 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (498)
                      +.+.+++++|+|+++++...+                        +.|.+||..+++.......               +
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------~   88 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK---------------N   88 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT---------------T
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC---------------C
Confidence            369999999999988887776                        4799999988776432211               1


Q ss_pred             ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEE---------eccCCCeeEEEEeCCCCCEEEEee-CCCeE
Q 010883          233 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRI---------LAHTSDVNTVCFGDESGHLIYSGS-DDNLC  301 (498)
Q Consensus       233 h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i  301 (498)
                      +-..+..++++++|+++++...++.|++||..... .+..+         ..+......+++.|.+++++++.+ .++.|
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            22268899999999988888888999999986542 44444         233446889999843788888886 69999


Q ss_pred             EEEcCccccCCCceeEEecc----------ccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883          302 KVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       302 ~vwd~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      ++||.     .+..+..+..          +......++++|+ +.++++...++.|++||..+.               
T Consensus       169 ~~~~~-----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---------------  228 (329)
T 3fvz_A          169 VQFSP-----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---------------  228 (329)
T ss_dssp             EEECT-----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------------
T ss_pred             EEEcC-----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------------
Confidence            99995     4556655532          3344889999998 777777788899999998752               


Q ss_pred             cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC------CCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST------GQKYIYTGSHDSCVYVYDLVSGEQVAALK  444 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  444 (498)
                                         +.+..+..........    ..+++|      +|+..++...+..|++||+.+++.+..+.
T Consensus       229 -------------------~~~~~~~~~~~~~~~~----~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          229 -------------------EFVREIKHASFGRNVF----AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             -------------------CEEEEECCTTTTTCEE----EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             -------------------cEEEEEeccccCCCcc----eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence                               3333332111101111    112333      33333334445689999999999998873


Q ss_pred             ---cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          445 ---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       445 ---~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                         .+...+.+++++|+|.++++...++.|++|++...
T Consensus       286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence               66778999999999988888889999999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=8.1e-18  Score=158.30  Aligned_cols=240  Identities=11%  Similarity=0.095  Sum_probs=161.2

Q ss_pred             ceEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEeecCCC---ceeEEEEEeCCCCCeEEEEECC-----------
Q 010883          133 RAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQRHLVYASMS-----------  197 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~-~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~s~d-----------  197 (498)
                      .+..++|+|||+++++ +..++.|.+||+.+++...........   ...+..++|+|+|++|++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            5678999999986654 456899999999988665543322110   2347789999999999998865           


Q ss_pred             -CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883          198 -PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       198 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                       +.|.+||+.+++.........              +...+.+++|+|+|+ +++++.  .|++||+.+++....+..+.
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~  186 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFP--------------MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRN  186 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEE--------------CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTT
T ss_pred             CCeEEEEECCCccccceeeecc--------------CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccc
Confidence             899999998765432222111              112577899999999 666543  49999999998877665332


Q ss_pred             C------------------------CeeEEEEeCCCCC-----------EEEEeeCCCeEEEEcCccccCCCceeEEecc
Q 010883          277 S------------------------DVNTVCFGDESGH-----------LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG  321 (498)
Q Consensus       277 ~------------------------~v~~~~~~~~~~~-----------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  321 (498)
                      .                        ....++++ +++.           ++.....++.+.+|++.             .
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  252 (349)
T 1jmx_B          187 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-------------D  252 (349)
T ss_dssp             CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCEEEEEEE-------------E
T ss_pred             cCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCCccccccceeEEEEeccCCcEEecccc-------------c
Confidence            0                        22334444 2211           11122233344444432             2


Q ss_pred             ccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883          322 HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV  400 (498)
Q Consensus       322 ~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (498)
                      +...+..++++| ++++++++  ++.|.+||+.+.                                  +.+..+.....
T Consensus       253 ~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~~  296 (349)
T 1jmx_B          253 LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR----------------------------------KLIKAANLDHT  296 (349)
T ss_dssp             CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC
T ss_pred             CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC----------------------------------eEEEEEcCCCC
Confidence            455788999999 99999888  889999999873                                  33333332211


Q ss_pred             eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC
Q 010883          401 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH  446 (498)
Q Consensus       401 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h  446 (498)
                             ...++|+|++++|++++.++.|++||+.+++.+..+...
T Consensus       297 -------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          297 -------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             -------CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -------ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence                   123467789999998888999999999999998888654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=5.2e-18  Score=174.21  Aligned_cols=299  Identities=12%  Similarity=0.029  Sum_probs=190.7

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEE--ECCCeEEEEECCCCeEEEEEeecCCCceeEE---------EEEeC--CCCCe-
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVT---------DTSLS--PDQRH-  190 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~---------~~~~s--p~~~~-  190 (498)
                      ..+.+|...+..++|++++-+++..  +.++...||....+.....+   ..+...+.         ...|+  |||+. 
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA---LPAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES---SCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee---CCCCccccccccccCCccceeeeecCCCeE
Confidence            3567789999999999887677766  55888999986444333322   22333444         45554  99998 


Q ss_pred             EEEEEC-CCeEEEEECC--C-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----------C
Q 010883          191 LVYASM-SPIVHIVDVG--S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------D  256 (498)
Q Consensus       191 l~~~s~-d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----------g  256 (498)
                      |+.++. +..|.+|++.  + +....+....            ...|...+.+++|+|||+.|++++.+          .
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCCCEECSCCC------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred             EEEEECCCCeEEEEcCCCCCCCCCEeccCCc------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence            877664 5567777766  3 4432222110            00144578899999999999998876          5


Q ss_pred             eEEEEECCC------CeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCC--------CeEEEEcCccccCCC---ceeEE
Q 010883          257 CIYVYDLEA------NKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKG---KPAGV  318 (498)
Q Consensus       257 ~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~---~~~~~  318 (498)
                      .|++||+.+      ++. ..+. .+...+..++|+ +++++|+.++.+        ..|++||+..   .+   .....
T Consensus       162 ~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~---~g~~~~~~~l  236 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTE---DGRFADTRTL  236 (662)
T ss_dssp             EEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECT---TSCEEEEEEE
T ss_pred             EEEEEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECC---CCcccccEEe
Confidence            899999988      544 4555 566778889998 889988877755        3799999851   12   33333


Q ss_pred             eccccccEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc
Q 010883          319 LMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK  396 (498)
Q Consensus       319 ~~~~~~~v~~l~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (498)
                      ..+|...+..+.|+|||++++++..++  .|.+||+.+......                                  ..
T Consensus       237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l----------------------------------~~  282 (662)
T 3azo_A          237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL----------------------------------CR  282 (662)
T ss_dssp             EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES----------------------------------SC
T ss_pred             CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec----------------------------------cc
Confidence            344568899999999999888888888  556666544221100                                  00


Q ss_pred             cCceeEEE-EE-EEeccccCCCCcEEEEEecCCeEEEE--ECCCCcEEEEeccCCCCeeee-EEcCCCCeEEEEeCCCc-
Q 010883          397 GHSVLRTL-IR-CHFSPVYSTGQKYIYTGSHDSCVYVY--DLVSGEQVAALKYHTSPVRDC-SWHPSQPMLVSSSWDGD-  470 (498)
Q Consensus       397 ~~~~~~~~-~~-~~~~~~~s~~~~~l~~g~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l-~~sp~~~~l~s~~~Dg~-  470 (498)
                      .+...... .. .....+|+|+++++++++. +.++||  |+.+++ +..+..|...+..+ +++.+.-++++++.+.. 
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  360 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAY  360 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEE
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCC
Confidence            00000000 00 0011246678999999998 999998  655555 67787787778777 55433334555566654 


Q ss_pred             -EEEecCCCC
Q 010883          471 -VVRWEFPGN  479 (498)
Q Consensus       471 -i~iw~~~~~  479 (498)
                       |.+|++.++
T Consensus       361 ~i~~~d~~~g  370 (662)
T 3azo_A          361 EVVELDTVTG  370 (662)
T ss_dssp             EEEEEETTTC
T ss_pred             EEEEEECCCC
Confidence             444555444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.81  E-value=5.2e-17  Score=152.78  Aligned_cols=259  Identities=12%  Similarity=0.168  Sum_probs=175.0

Q ss_pred             CceEEEEEcCCCCEEEEEE---------CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---C-
Q 010883          132 SRAYVSQFSADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---P-  198 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~-  198 (498)
                      ..+..+++  ||+++|...         .++.|.+|++.++.... +       ..+..++|+|||++|++++.+   + 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-------~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-------ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            35677788  999888653         25679999999875322 1       358889999999999987754   3 


Q ss_pred             -eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----------------------
Q 010883          199 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------------------  255 (498)
Q Consensus       199 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----------------------  255 (498)
                       .|.+|++.+++...+..                 +.. +..++|+|||+.|+.++.+                      
T Consensus        85 ~~l~~~~~~~g~~~~l~~-----------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~  146 (347)
T 2gop_A           85 SEIWVADLETLSSKKILE-----------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF  146 (347)
T ss_dssp             EEEEEEETTTTEEEEEEE-----------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred             ceEEEEECCCCceEEEEc-----------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence             48888888876544322                 112 7889999999999888642                      


Q ss_pred             -----CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC-------eEEEEcCccccCCCceeEEecccc
Q 010883          256 -----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-------LCKVWDRRCLNVKGKPAGVLMGHL  323 (498)
Q Consensus       256 -----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~~~~~~  323 (498)
                           ..|++||+.+++.+..+.. . .+..+.|+ +++ +++++..++       ...+|.+.    .+. ...+..+ 
T Consensus       147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d----~~~-~~~l~~~-  216 (347)
T 2gop_A          147 FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE----DGK-EEKMFEK-  216 (347)
T ss_dssp             ---CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE----TTE-EEEEEEE-
T ss_pred             ccCccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC----CCc-eEEeccC-
Confidence                 5799999999887455554 4 88999998 677 777776542       44555554    222 2333334 


Q ss_pred             ccEEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE
Q 010883          324 EGITFIDSRGDGRYLISNGKD--------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY  395 (498)
Q Consensus       324 ~~v~~l~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (498)
                      ..+..+  +|||+.|+.++.+        ..|.+||  +.                                  +.....
T Consensus       217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----------------------------------~~~~l~  258 (347)
T 2gop_A          217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----------------------------------EVMGIL  258 (347)
T ss_dssp             ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----------------------------------CEEESS
T ss_pred             cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----------------------------------ceEecc
Confidence            455544  9999988877754        3577777  21                                  111111


Q ss_pred             ccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE-EEe
Q 010883          396 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV-VRW  474 (498)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i-~iw  474 (498)
                      ..+..  .+..   .+.|+ |+ ++++++.++.++|| +.+++....+ .+...|.+++|+|  .++++++.++.. .+|
T Consensus       259 ~~~~~--~~~~---~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          259 DEVDR--GVGQ---AKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELF  327 (347)
T ss_dssp             TTCCS--EEEE---EEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred             ccCCc--ccCC---ccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence            11111  1111   13567 77 88999999999999 8766654444 4577899999999  677777777665 777


Q ss_pred             cCC
Q 010883          475 EFP  477 (498)
Q Consensus       475 ~~~  477 (498)
                      .++
T Consensus       328 ~~~  330 (347)
T 2gop_A          328 TWD  330 (347)
T ss_dssp             EES
T ss_pred             EeC
Confidence            765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.80  E-value=1.7e-17  Score=156.62  Aligned_cols=260  Identities=15%  Similarity=0.096  Sum_probs=177.9

Q ss_pred             EEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeecCC---CceeEEEEEeCCCCCeEEEEEC--CCeE
Q 010883          136 VSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS---LRWTVTDTSLSPDQRHLVYASM--SPIV  200 (498)
Q Consensus       136 ~~~~s~dg~~la~~~~----------dg~i~vw~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~s~--d~~i  200 (498)
                      .++|+|||++|+++..          ++.|.+||..+.+.+........   +......++|+|||++|+++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            8999999999998863          56799999998877666543321   1124567899999999998874  5799


Q ss_pred             EEEECCCCceecc-ccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeeeEEE-----
Q 010883          201 HIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-NKLSLRI-----  272 (498)
Q Consensus       201 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~-~~~~~~~-----  272 (498)
                      .+||+.+++.... ....                  ....+.+.|++ ..+++.+.||.+.+|++.. ++.....     
T Consensus       134 ~v~d~~~~~~~~~~i~~~------------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~  195 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAA------------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM  195 (361)
T ss_dssp             EEEETTTTEEEEEEGGGT------------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred             EEEECCCCcEEEEEecCC------------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence            9999998876543 3221                  12335667765 6778888999999999865 4443221     


Q ss_pred             -eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--c----c----cccEEEEEEcCCCCEEEEE
Q 010883          273 -LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--G----H----LEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       273 -~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~----~----~~~v~~l~~~~~~~~l~s~  341 (498)
                       ..+..++ .+.++ +++..++..+.++.|.++|+...  .......+.  .    +    ......++++|+++.++++
T Consensus       196 ~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~  271 (361)
T 2oiz_A          196 FSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSGD--EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF  271 (361)
T ss_dssp             SCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSSS--SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred             EcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecCC--CceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence             1111221 22333 44556666778899999998521  111111111  0    0    0111236899998887765


Q ss_pred             eC-----------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          342 GK-----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       342 ~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      ..           .+.|.+||+.+                                  .+.+..+..+.        .+.
T Consensus       272 ~~~~~~~~~~~~~~~~v~viD~~t----------------------------------~~~v~~i~~~~--------p~~  309 (361)
T 2oiz_A          272 MHPDGKEGTHKFPAAEIWVMDTKT----------------------------------KQRVARIPGRD--------ALS  309 (361)
T ss_dssp             EESSCCTTCTTCCCSEEEEEETTT----------------------------------TEEEEEEECTT--------CCE
T ss_pred             EccCCCcccccCCCceEEEEECCC----------------------------------CcEEEEEecCC--------eeE
Confidence            43           34799999987                                  35556665544        234


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECCCC--cEEEEeccCCCCeeeeEEcCCCC
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCSWHPSQP  460 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~  460 (498)
                      .+|+|||++|++++. +.|.+||+.++  +.+..+..+......++++|+|.
T Consensus       310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            467789999999887 99999999999  99999876777889999999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=2e-16  Score=144.50  Aligned_cols=246  Identities=11%  Similarity=0.139  Sum_probs=173.2

Q ss_pred             CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE-cCCCCEEEEEe
Q 010883          175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGS  253 (498)
Q Consensus       175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s~~g~~l~~g~  253 (498)
                      +-..+.+++++|+++++++...++.|.+||... +.........          ...++...+.++++ .++++++++..
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~----------~~~~~~~~p~~i~~~~~~g~l~v~~~   96 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG----------KRDSQLLYPNRVAVVRNSGDIIVTER   96 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS----------SSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccC----------CCcccccCceEEEEEcCCCeEEEEcC
Confidence            344689999999999888888899999999874 3322221100          01123446889999 46776665553


Q ss_pred             C-CCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEE
Q 010883          254 S-DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI  329 (498)
Q Consensus       254 ~-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l  329 (498)
                      . ++.|.+|| .+++.+..+. .+...+.++++. ++++++++...++.|.+||..     +..+..+.  .+...+..+
T Consensus        97 ~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A           97 SPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-----GNVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             GGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-----SCEEEEEECTTTCSSEEEE
T ss_pred             CCCCEEEEEC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCC-----CCEEEEeCCCCccCCcEEE
Confidence            3 78999999 5666666554 334578999997 678888888888999999963     44444443  344578999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      +++++++++++...++.|++||...                                   ..+..+.........    .
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------------------~~~~~~~~~g~~~~p----~  210 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGITNYP----I  210 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTSCSE----E
T ss_pred             EECCCCCEEEEECCCCEEEEEcCCC-----------------------------------CEEEEEccCCccCCC----c
Confidence            9999999888888889999999753                                   233333222111111    2


Q ss_pred             ccccCCCCcEEEEEecCC-eEEEEECCCCcEEEEeccCCC--CeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          410 SPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .++++++|+++++...++ .|.+||. +++.+..+..+..  .+.+++++|+|+++++ +.|+.|++|++...
T Consensus       211 ~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          211 GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            235667898888887776 9999995 5777777765433  4779999999987777 67999999998653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=2.1e-16  Score=144.38  Aligned_cols=246  Identities=14%  Similarity=0.152  Sum_probs=172.2

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec---CCCceeEEEEEe-CCCCCeEEEEEC-CCeEEE
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRWTVTDTSL-SPDQRHLVYASM-SPIVHI  202 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~~v~~~~~-sp~~~~l~~~s~-d~~i~i  202 (498)
                      .++-....+++++++|+++++...++.|.+||.. +..+......   ..+...+..+++ .++++++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3456678999999999998888889999999987 4344332211   123346889999 577776666543 789999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCee
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVN  280 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~  280 (498)
                      |+ .+++.......               .+...+.+++++++|+++++...++.|.+||.. ++.+..+.  .+...+.
T Consensus       105 ~d-~~g~~~~~~~~---------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A          105 YN-QYGQFVRKFGA---------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             EC-TTSCEEEEECT---------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             EC-CCCcEEEEecC---------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence            99 44544322211               112257899999999977777778999999964 55555553  3445789


Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc--cccEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCCC
Q 010883          281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSS  357 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~  357 (498)
                      .+++. ++++++++...++.|++||..     +..+..+..+  ...+..++++++|+++++...++ .|.+||...   
T Consensus       168 ~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---  238 (286)
T 1q7f_A          168 GVVVN-DKQEIFISDNRAHCVKVFNYE-----GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---  238 (286)
T ss_dssp             EEEEC-SSSEEEEEEGGGTEEEEEETT-----CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---
T ss_pred             EEEEC-CCCCEEEEECCCCEEEEEcCC-----CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---
Confidence            99997 678888887889999999973     4555555433  36789999999999888888776 999999643   


Q ss_pred             ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883          358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG  437 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  437 (498)
                                                      +.+..+..+......    ...+++|+|+++++ +.++.|++|++...
T Consensus       239 --------------------------------~~~~~~~~~~~~~~~----~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          239 --------------------------------QLISALESKVKHAQC----FDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             --------------------------------CEEEEEEESSCCSCE----EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             --------------------------------CEEEEEcccCCCCcc----eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence                                            333344332211111    23356678987766 67999999997653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=6.3e-17  Score=166.14  Aligned_cols=280  Identities=14%  Similarity=0.089  Sum_probs=173.1

Q ss_pred             EEEEc--CCCCE-EEEEEC-CCeEEEEECC--C-CeEEEEEeecCC---CceeEEEEEeCCCCCeEEEEECC--------
Q 010883          136 VSQFS--ADGSL-FVAGFQ-ASQIRIYDVE--R-GWKIQKDILAKS---LRWTVTDTSLSPDQRHLVYASMS--------  197 (498)
Q Consensus       136 ~~~~s--~dg~~-la~~~~-dg~i~vw~~~--~-~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~s~d--------  197 (498)
                      ...|+  |||++ |+.++. +..|.+|++.  . +. ...+ ....   +...+..++|+|||+.|++++.+        
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEec-cCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence            45554  99998 776654 5667777776  2 42 2222 1111   56688999999999999998876        


Q ss_pred             --CeEEEEECCC------CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEE
Q 010883          198 --PIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVY  261 (498)
Q Consensus       198 --~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--------g~i~vw  261 (498)
                        ..|++||+.+      ++...+..                .+...+..++|+|||++|+.++.+        ..|++|
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~  222 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSAVRELSD----------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTA  222 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGGSEESSC----------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred             ceeEEEEEECCCCccccCCceeEEEe----------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence              5899999987      54433220                011257788999999999988755        379999


Q ss_pred             ECC-CC---eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC--eEEEEcCccccCCCceeEEecccccc--------EE
Q 010883          262 DLE-AN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEG--------IT  327 (498)
Q Consensus       262 d~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~--------v~  327 (498)
                      |+. ++   +.......|...+..+.|+ ++++++++++.++  .|.+||+.    .+........+...        +.
T Consensus       223 d~~~~g~~~~~~~l~~~~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~~~~p~w~~~~~  297 (662)
T 3azo_A          223 RVTEDGRFADTRTLLGGPEEAIAQAEWA-PDGSLIVATDRTGWWNLHRVDPA----TGAATQLCRREEEFAGPLWTPGMR  297 (662)
T ss_dssp             EECTTSCEEEEEEEEEETTBCEEEEEEC-TTSCEEEEECTTSSCEEEEECTT----TCCEEESSCCSSBSSCCCCSTTCC
T ss_pred             EECCCCcccccEEeCCCCCceEcceEEC-CCCeEEEEECCCCCeEEEEEECC----CCceeecccccccccCccccccCc
Confidence            999 56   4433333457889999998 6777888888888  66666664    33333222222221        46


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883          328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC  407 (498)
Q Consensus       328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (498)
                      .++|+|++++++++.. +.++||.+....                                 ..+..+..+....  ...
T Consensus       298 ~~~~~~~~~~~~~~~~-~~~~l~~~d~~~---------------------------------~~~~~l~~~~~~~--~~~  341 (662)
T 3azo_A          298 WFAPLANGLIAVVHGK-GAAVLGILDPES---------------------------------GELVDAAGPWTEW--AAT  341 (662)
T ss_dssp             SEEECTTSCEEEEEBS-SSCEEEEEETTT---------------------------------TEEEECCSSCCEE--EEE
T ss_pred             eEeEeCCCEEEEEEEc-CccEEEEEECCC---------------------------------CcEEEecCCCCeE--EEE
Confidence            7889999999999998 999999443210                                 2233343332111  111


Q ss_pred             EeccccCCCCcEEEEEecCC--eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          408 HFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       408 ~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                       ++  ++.+.-++++++.+.  .|+++|+.+++.......|...+....+.+...+.+.+..+..|..|-+.
T Consensus       342 -~s--~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~  410 (662)
T 3azo_A          342 -LT--VSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYP  410 (662)
T ss_dssp             -EE--EETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred             -Ee--cCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence             11  122222333344443  57777887887655545555555555565554444444344466666543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=4.7e-17  Score=152.19  Aligned_cols=275  Identities=10%  Similarity=0.059  Sum_probs=182.7

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~  211 (498)
                      ..|.+++|++++..++..+.++.++.|.   +......   ..+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEI---SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEE---ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             cccceeeecCCccceeEEeecccCcccc---cceeEEE---eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            4567788999988887777888999992   3233322   223335789999999997778888899999999887654


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEEEe--ccCCCeeEEEEe
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRIL--AHTSDVNTVCFG  285 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~  285 (498)
                      .....                +...+.+++++++|+++++...+    +.|.+||..+++....+.  .+...+.++++.
T Consensus        80 ~~~~~----------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d  143 (333)
T 2dg1_A           80 RPFVS----------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD  143 (333)
T ss_dssp             EEEEC----------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred             EEeeC----------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence            33210                11268999999999977776666    689999998877643332  234578999997


Q ss_pred             CCCCCEEEEeeC------CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCCc
Q 010883          286 DESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       286 ~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~  358 (498)
                       ++++++++...      .+.|..+|..    ... ...+......+..++|+|+++.|+ +...++.|.+||+......
T Consensus       144 -~~g~l~v~~~~~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~  217 (333)
T 2dg1_A          144 -SKGGFYFTDFRGYSTNPLGGVYYVSPD----FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT  217 (333)
T ss_dssp             -TTSCEEEEECCCBTTBCCEEEEEECTT----SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred             -CCCCEEEEeccccccCCCceEEEEeCC----CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence             67887776653      3566666653    222 223333445678999999998665 4456789999998641100


Q ss_pred             -cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883          359 -ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG  437 (498)
Q Consensus       359 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  437 (498)
                       ....                          ......+.++.   .    ...++++++|+++++...++.|.+||. .+
T Consensus       218 ~~~~~--------------------------~~~~~~~~~~~---~----~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g  263 (333)
T 2dg1_A          218 IQPFG--------------------------ATIPYYFTGHE---G----PDSCCIDSDDNLYVAMYGQGRVLVFNK-RG  263 (333)
T ss_dssp             EEEEE--------------------------EEEEEECCSSS---E----EEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             ccccc--------------------------ceEEEecCCCC---C----CCceEECCCCCEEEEEcCCCEEEEECC-CC
Confidence             0000                          00000111111   1    122356678998888777899999998 57


Q ss_pred             cEEEEeccCCC------CeeeeEEcCCCCeEEEEeCC
Q 010883          438 EQVAALKYHTS------PVRDCSWHPSQPMLVSSSWD  468 (498)
Q Consensus       438 ~~~~~~~~h~~------~v~~l~~sp~~~~l~s~~~D  468 (498)
                      +.+..+..+..      .+.+++|+|++..|+.++.+
T Consensus       264 ~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          264 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            77766654432      68999999998766655554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=4.1e-17  Score=156.02  Aligned_cols=261  Identities=10%  Similarity=0.010  Sum_probs=170.3

Q ss_pred             EEECCCCeEEEEEeecCCCceeEEE-----EEeCCCCCeEEEEEC-CC--eEEEEECCCCceeccccccccccCcccccc
Q 010883          157 IYDVERGWKIQKDILAKSLRWTVTD-----TSLSPDQRHLVYASM-SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAA  228 (498)
Q Consensus       157 vw~~~~~~~~~~~~~~~~~~~~v~~-----~~~sp~~~~l~~~s~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (498)
                      .++..++..+..+   ..+......     .+|+|||++|++++. ++  .|.+||+.+++...+...            
T Consensus        14 ~~~~~~g~~~~~l---t~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~------------   78 (388)
T 3pe7_A           14 YQDASTGAQVTRL---TPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG------------   78 (388)
T ss_dssp             EECTTTCCEEEEC---SCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS------------
T ss_pred             EecCCCCcceEEe---cCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC------------
Confidence            3466666554433   233334444     789999999999887 66  488899998876554431            


Q ss_pred             CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe-CCCCCEEEEe------------
Q 010883          229 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-DESGHLIYSG------------  295 (498)
Q Consensus       229 ~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~------------  295 (498)
                          +...+..+.|+|||+.|+.++.++.|++||+.+++.......+...+....|. .+++.+++..            
T Consensus        79 ----~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           79 ----RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             ----SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             ----CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence                22233456899999999999999999999999998766665565555444441 3777777642            


Q ss_pred             ----------eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCCCc
Q 010883          296 ----------SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSN  358 (498)
Q Consensus       296 ----------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~  358 (498)
                                ..+..|.+||+.    .++ ...+..+...+..+.|+| ||+.|+....+      ..|.++|+....  
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~----~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--  227 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLK----TGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--  227 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETT----TCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--
T ss_pred             cchhhhhhccCCcceEEEEECC----CCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--
Confidence                      245789999986    443 444555677899999999 99998877653      367777776421  


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CC----eEEEEE
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVYD  433 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iwd  433 (498)
                                                       ...+..+....    ....+.|||||+.|+..+. ++    .|++||
T Consensus       228 ---------------------------------~~~l~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          228 ---------------------------------MRKVKTHAEGE----SCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             ---------------------------------CEESCCCCTTE----EEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred             ---------------------------------eEEeeeCCCCc----ccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence                                             11111111001    1224568889997766544 22    399999


Q ss_pred             CCCCcEE--EEeccCCC---CeeeeEEcCCCCeEEEE---------eCCCcEEEecCCCCC
Q 010883          434 LVSGEQV--AALKYHTS---PVRDCSWHPSQPMLVSS---------SWDGDVVRWEFPGNG  480 (498)
Q Consensus       434 ~~~~~~~--~~~~~h~~---~v~~l~~sp~~~~l~s~---------~~Dg~i~iw~~~~~~  480 (498)
                      +.+++..  ..+.++..   ....++|+|||+.|+..         ..+..|++||+.++.
T Consensus       271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            9998743  33332110   12334799999977754         456689999998753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=5.3e-17  Score=168.48  Aligned_cols=287  Identities=14%  Similarity=0.112  Sum_probs=176.5

Q ss_pred             eEEEEEcCCCCEEEEEECC---------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          134 AYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      ...++|||||++|+.++.+         +.+.+||+.+++..    ....+...+...+|||||+.||.+. ++.|++|+
T Consensus        64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~  138 (740)
T 4a5s_A           64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI  138 (740)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence            3458899999999998876         56779999998432    2334555799999999999999985 68999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCce---------ecEEEEEEcCCCCEEEEEeCCC-------------------
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVAGSSDD-------------------  256 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~i~~~~~s~~g~~l~~g~~dg-------------------  256 (498)
                      +.+++...+......  ...+     .++.         .....+.|||||+.||.++.|.                   
T Consensus       139 ~~~~~~~~lt~~g~~--~~~~-----~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~  211 (740)
T 4a5s_A          139 EPNLPSYRITWTGKE--DIIY-----NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP  211 (740)
T ss_dssp             STTSCCEECCSCCBT--TTEE-----ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred             CCCCceEEEcCCCCc--ccee-----cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCC
Confidence            988875443221100  0000     0111         1223589999999999875321                   


Q ss_pred             -----------------eEEEEECCC---Ce--eeEEEec------cCCCeeEEEEeCCCCCEEEEeeC----CCeEEEE
Q 010883          257 -----------------CIYVYDLEA---NK--LSLRILA------HTSDVNTVCFGDESGHLIYSGSD----DNLCKVW  304 (498)
Q Consensus       257 -----------------~i~vwd~~~---~~--~~~~~~~------~~~~v~~~~~~~~~~~~l~s~s~----dg~i~vw  304 (498)
                                       .|++||+.+   ++  ....+..      |...+..++|+ +++++++....    +..|.+|
T Consensus       212 ~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~  290 (740)
T 4a5s_A          212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDIC  290 (740)
T ss_dssp             EEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEE
T ss_pred             cceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEE
Confidence                             588899988   73  2233432      77789999999 67776665433    3479999


Q ss_pred             cCccccCCCc----e--eEEe--ccccccEE-----EEEEcCCCCEEE-EEe-CCC--cEEEEeCCCCCCccccccCccc
Q 010883          305 DRRCLNVKGK----P--AGVL--MGHLEGIT-----FIDSRGDGRYLI-SNG-KDQ--AIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       305 d~~~~~~~~~----~--~~~~--~~~~~~v~-----~l~~~~~~~~l~-s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      |+.    .++    +  +..+  ..|...|.     .+.|+|||+.|+ ..+ .+|  .|++||+......         
T Consensus       291 d~~----tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~---------  357 (740)
T 4a5s_A          291 DYD----ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT---------  357 (740)
T ss_dssp             EEE----TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE---------
T ss_pred             ECC----CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE---------
Confidence            987    333    1  1111  33444443     678999999877 555 343  5888887753211         


Q ss_pred             ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE-EEec----CC--eEEEEECCCCcEE
Q 010883          368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSH----DS--CVYVYDLVSGEQV  440 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~----dg--~i~iwd~~~~~~~  440 (498)
                                               ....+.......    ..  +  |++.|+ +++.    .+  .|+..++..+...
T Consensus       358 -------------------------~lT~g~~~v~~~----~~--~--d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~  404 (740)
T 4a5s_A          358 -------------------------FITKGTWEVIGI----EA--L--TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV  404 (740)
T ss_dssp             -------------------------ESCCSSSCEEEE----EE--E--CSSEEEEEESCGGGCTTCBEEEEEETTEEEEE
T ss_pred             -------------------------ecccCCEEEEEE----EE--E--eCCEEEEEEecCCCCCceeEEEEEECCCCCcc
Confidence                                     111111111111    11  2  344444 4443    22  4555565555444


Q ss_pred             EEecc----CCCCeeeeEEcCCCCeEEEEeCC---CcEEEecCCCC
Q 010883          441 AALKY----HTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGN  479 (498)
Q Consensus       441 ~~~~~----h~~~v~~l~~sp~~~~l~s~~~D---g~i~iw~~~~~  479 (498)
                      ..+..    ....+..+.|+|++++++.....   ..+.+++..++
T Consensus       405 ~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~  450 (740)
T 4a5s_A          405 TCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND  450 (740)
T ss_dssp             EESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred             eeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence            34542    23568899999999976654433   35777776654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=3.4e-16  Score=161.72  Aligned_cols=284  Identities=11%  Similarity=0.086  Sum_probs=185.4

Q ss_pred             CCCCEEEEEECCC-----eEEEEECCCCeEEEEEe----ecCCCceeEEEEEeCCCCCeEEEEECCC-----eEEEEECC
Q 010883          141 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVG  206 (498)
Q Consensus       141 ~dg~~la~~~~dg-----~i~vw~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~s~d~-----~i~iwd~~  206 (498)
                      |||++++....++     .|.+.+...+.. ..++    ...++...+..++|||||++|+.++.++     .|++||+.
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            7888777654322     344444444422 1111    1234555789999999999999876543     89999999


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCeee-
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC----------------IYVYDLEANKLS-  269 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~----------------i~vwd~~~~~~~-  269 (498)
                      +++...... .                ...+..++|+|||+.|+.++.++.                |++|++.+++.. 
T Consensus       160 tg~~~~~~~-~----------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~  222 (710)
T 2xdw_A          160 GAKELPDVL-E----------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED  222 (710)
T ss_dssp             TTEEEEEEE-E----------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred             CCCCCcccc-c----------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc
Confidence            987654211 0                013567899999999999987765                999999887632 


Q ss_pred             -EEEe--ccCCCeeEEEEeCCCCCEEEEeeC-----CCeEEEEcCcccc--CCCc-eeEEeccccccEEEEEEcCCCCEE
Q 010883          270 -LRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN--VKGK-PAGVLMGHLEGITFIDSRGDGRYL  338 (498)
Q Consensus       270 -~~~~--~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~~--~~~~-~~~~~~~~~~~v~~l~~~~~~~~l  338 (498)
                       ..+.  .|...+..+.|+ +++++|+.++.     +..|++||+....  ..+. ....+..+...+.. .|+|+|..|
T Consensus       223 ~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l  300 (710)
T 2xdw_A          223 ILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVF  300 (710)
T ss_dssp             EEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEE
T ss_pred             eEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEE
Confidence             2222  245567899998 78888877664     5789999986200  0021 34555556666554 488899888


Q ss_pred             EEEeCC----CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          339 ISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       339 ~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      +..+..    +.|.+||+.+...                                .....+..+.....+..+    .++
T Consensus       301 ~~~s~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~~~~~~----~~~  344 (710)
T 2xdw_A          301 TFKTNRHSPNYRLINIDFTDPEE--------------------------------SKWKVLVPEHEKDVLEWV----ACV  344 (710)
T ss_dssp             EEEECTTCTTCEEEEEETTSCCG--------------------------------GGCEEEECCCSSCEEEEE----EEE
T ss_pred             EEEECCCCCCCEEEEEeCCCCCc--------------------------------ccceeccCCCCCCeEEEE----EEE
Confidence            766653    3599999876321                                011112222111111122    344


Q ss_pred             CCCcEEEEEecCC--eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEE-e---CCCcEEEecCCCCC
Q 010883          415 TGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS-S---WDGDVVRWEFPGNG  480 (498)
Q Consensus       415 ~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~-~---~Dg~i~iw~~~~~~  480 (498)
                      +++.++++...++  .|++||+.+++.+..+..+.+.|..++++|+++.|+.. +   ..+.|+.||+.++.
T Consensus       345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            5778888888888  46677887888888888788889999999999855533 2   34789999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=1.3e-15  Score=142.05  Aligned_cols=253  Identities=11%  Similarity=0.060  Sum_probs=174.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEECC------------------------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeC
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQA------------------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS  185 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s  185 (498)
                      --+.+.+++++|+|+++++...+                        +.|.+||..+++.....  ...+-..+..++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--~~~~~~~p~gia~d   99 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS--GKNLFYLPHGLSID   99 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--CTTTCSSEEEEEEC
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--CCCccCCceEEEEC
Confidence            35779999999999999988777                        47999999888654332  22333468999999


Q ss_pred             CCCCeEEEEECCCeEEEEECCCCc-eeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEe-CCCeEEEEE
Q 010883          186 PDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGS-SDDCIYVYD  262 (498)
Q Consensus       186 p~~~~l~~~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~-~dg~i~vwd  262 (498)
                      |+|+++++...++.|++|+..... ......... .      .....++-..+..++++| ++.++++.+ .++.|++||
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-~------~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~  172 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-Q------PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS  172 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT-B------CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC-C------CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence            999988888888999999986542 111111000 0      000112334688999999 788777776 689999999


Q ss_pred             CCCCeeeEEEecc----------CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEE
Q 010883          263 LEANKLSLRILAH----------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFID  330 (498)
Q Consensus       263 ~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~  330 (498)
                       .+++.+..+...          -.....+++.|..++++++...++.|++||..    .++.+..+.  .+...+..++
T Consensus       173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----TKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTTTTTCEEEEE
T ss_pred             -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccccCCCcceee
Confidence             566666666422          23488999984448888888889999999986    577776663  4556788999


Q ss_pred             EcCCCCEEEE-------EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeE
Q 010883          331 SRGDGRYLIS-------NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLR  402 (498)
Q Consensus       331 ~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  402 (498)
                      ++| +..+++       ...+..|++||+.+.                                  +.+..+... ....
T Consensus       248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g----------------------------------~~~~~~~~~~~~~~  292 (329)
T 3fvz_A          248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG----------------------------------EIIDVFKPVRKHFD  292 (329)
T ss_dssp             EET-TEEEEEECCCCTTCSCCCCEEEEETTTC----------------------------------CEEEEECCSSSCCS
T ss_pred             ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC----------------------------------eEEEEEcCCCCccC
Confidence            999 333333       334458999998763                                  333333211 0011


Q ss_pred             EEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883          403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                      ..    ..++++|+|.++++...++.|++|++.
T Consensus       293 ~p----~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          293 MP----HDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             SE----EEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             Ce----eEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            11    233567799888888889999999975

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=4.3e-14  Score=129.63  Aligned_cols=283  Identities=9%  Similarity=0.058  Sum_probs=188.7

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      ..+...+.+++++++|+++++...++.|.+||.. +.. .... .......+..+++.++++++++...++.|..|+.. 
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            3445789999999999988877668899999988 532 2222 12233578999999999988777668899999976 


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEeC
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGD  286 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~  286 (498)
                      ++.... ...              .....+.++++.++|+++++...++.|.+||. +++.... ...+...+..+++. 
T Consensus        87 g~~~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-  149 (299)
T 2z2n_A           87 GIIKEY-TLP--------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-  149 (299)
T ss_dssp             SCEEEE-ECS--------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-
T ss_pred             CcEEEE-eCC--------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-
Confidence            332111 110              01125889999999987777777889999998 5544322 22345678899996 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeE-EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF  365 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  365 (498)
                      ++++++++...++.|..||..     +.... ........+..++++++++++++...++.|.+||. +..         
T Consensus       150 ~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------  214 (299)
T 2z2n_A          150 SDNALWFTENQNNAIGRITES-----GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------  214 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---------
T ss_pred             CCCCEEEEeCCCCEEEEEcCC-----CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc---------
Confidence            778888777778899999972     22222 23334556889999999997777767888999998 421         


Q ss_pred             ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE-ec
Q 010883          366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LK  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~  444 (498)
                                                +..+.........    ...+++++|++.++...++.|..||. +++.... +.
T Consensus       215 --------------------------~~~~~~~~~~~~~----~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~  263 (299)
T 2z2n_A          215 --------------------------ITEFKIPTPNARP----HAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQ  263 (299)
T ss_dssp             --------------------------EEEEECSSTTCCE----EEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECS
T ss_pred             --------------------------EEEEECCCCCCCc----eeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCC
Confidence                                      1111111000111    22345668886666657889999998 4543222 33


Q ss_pred             cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .+...+.++++ +++.++++.. .+.|..++....
T Consensus       264 ~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          264 IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            45567899999 8888777655 566777776543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=8.3e-15  Score=145.16  Aligned_cols=276  Identities=14%  Similarity=0.046  Sum_probs=189.8

Q ss_pred             CCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC--CCceeccccccc
Q 010883          141 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG--SGTMESLANVTE  218 (498)
Q Consensus       141 ~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~--~~~~~~~~~~~~  218 (498)
                      |.+.++++...++.|.++|..+++.+..+...    ..+..+.|+|||+++++++.++.|.+||+.  +++........ 
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-  239 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-  239 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-
Confidence            44556777778899999999998766654322    246789999999999999999999999995  55443322211 


Q ss_pred             cccCccccccCCCCceecEEEEEEc----CCCCEEEEEeC-CCeEEEEECCCCeeeEEEec----------cC-CCeeEE
Q 010883          219 IHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HT-SDVNTV  282 (498)
Q Consensus       219 ~~~~~~~~~~~~~~h~~~i~~~~~s----~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~----------~~-~~v~~~  282 (498)
                                      .....++|+    |||+++++++. ++.|.++|..+.+.+..+..          |. ..+..+
T Consensus       240 ----------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i  303 (567)
T 1qks_A          240 ----------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  303 (567)
T ss_dssp             ----------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             ----------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence                            146789999    69998887765 58999999999998877652          21 257788


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCcccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~  361 (498)
                      ..++....+++....+|.|.++|.....  ...+..+ ........+.|+|++++++++. .++.|.++|+.+..     
T Consensus       304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-----  375 (567)
T 1qks_A          304 LASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-----  375 (567)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-----
T ss_pred             EEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-----
Confidence            8875556677777788999999986211  1112222 2334567889999999987665 57889999998742     


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeE--EEEEEEeccccCCCCcEEE-EEe-cCCeEEEEECCC
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLR--TLIRCHFSPVYSTGQKYIY-TGS-HDSCVYVYDLVS  436 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~s~~~~~l~-~g~-~dg~i~iwd~~~  436 (498)
                                                   .+..+.. .....  ....     .++|++..+. ++. .++.|.++|..+
T Consensus       376 -----------------------------l~~~i~vgg~~Phpg~g~~-----~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          376 -----------------------------LVAIEDTGGQTPHPGRGAN-----FVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             -----------------------------EEEEEECSSSSBCCTTCEE-----EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -----------------------------EEEEEeccCcCCCCcccee-----eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence                                         2222221 11000  0000     1244544444 443 468999999988


Q ss_pred             -------CcEEEEeccCCCCeeeeEEcCCCCeEEEEeC-------CCcEEEecCCCC
Q 010883          437 -------GEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-------DGDVVRWEFPGN  479 (498)
Q Consensus       437 -------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~-------Dg~i~iw~~~~~  479 (498)
                             .+.+.++......-..+..+|++++|.....       .+.|.++|+.+.
T Consensus       422 ~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          422 EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             TTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence                   6778888755443345788999998888663       359999999876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.74  E-value=4.2e-16  Score=160.52  Aligned_cols=280  Identities=11%  Similarity=0.019  Sum_probs=176.7

Q ss_pred             cCCCCEEEEEECCC-----eEEEEECCCCeEEEEEee----cCCCceeEEEEEeCCCCCeEEEEE-----CCCeEEEEEC
Q 010883          140 SADGSLFVAGFQAS-----QIRIYDVERGWKIQKDIL----AKSLRWTVTDTSLSPDQRHLVYAS-----MSPIVHIVDV  205 (498)
Q Consensus       140 s~dg~~la~~~~dg-----~i~vw~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~~~s-----~d~~i~iwd~  205 (498)
                      +|+|++++....++     .|.+.+...+.. ..+..    ..+|...+..++|||||++||.+.     .+..|++||+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            37888887766543     244444444422 22221    224566899999999999999543     3468999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-------------EEEEECCCCee----
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-------------IYVYDLEANKL----  268 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~-------------i~vwd~~~~~~----  268 (498)
                      .+++.........              .  ....++|+|||+.|+.++.+..             |++|++.++..    
T Consensus       155 ~tg~~~~~~~~~~--------------~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l  218 (695)
T 2bkl_A          155 DSGEWSKVDVIEG--------------G--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV  218 (695)
T ss_dssp             TTCCBCSSCCBSC--------------C--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE
T ss_pred             CCCCCcCCcccCc--------------c--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE
Confidence            9987531111110              0  1256899999999999988765             99999998762    


Q ss_pred             eEEEeccCCCeeEEEEeCCCCCEEEEeeCCC----eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe--
Q 010883          269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--  342 (498)
Q Consensus       269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--  342 (498)
                      +.....|...+..+.|+ +++++|+.++.++    .|.+|+..    .+ ....+..+...+....+ +++.+++...  
T Consensus       219 v~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~----~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~  291 (695)
T 2bkl_A          219 VHERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPG----EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEG  291 (695)
T ss_dssp             EECCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTT----CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTT
T ss_pred             EEecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCC----CC-ceEEeecCCCceEEEEe-cCCcEEEEECCC
Confidence            22223455678899998 7778777776665    67777653    22 34445555566666666 5566444443  


Q ss_pred             -CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883          343 -KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       343 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  421 (498)
                       .++.|.+||+.+....                               .....+..+.. ..+...    .++ ++.+++
T Consensus       292 ~~~~~l~~~d~~~~~~~-------------------------------~~~~l~~~~~~-~~l~~~----~~~-~~~lv~  334 (695)
T 2bkl_A          292 APRQRVFEVDPAKPARA-------------------------------SWKEIVPEDSS-ASLLSV----SIV-GGHLSL  334 (695)
T ss_dssp             CTTCEEEEEBTTBCSGG-------------------------------GCEEEECCCSS-CEEEEE----EEE-TTEEEE
T ss_pred             CCCCEEEEEeCCCCCcc-------------------------------CCeEEecCCCC-CeEEEE----EEE-CCEEEE
Confidence             2578999998763210                               00111111100 111111    223 678889


Q ss_pred             EEecCCeEEEEECC-CCcEEEEeccC-CCCeeeeEEcCCCCeEEEE----eCCCcEEEecCCCCC
Q 010883          422 TGSHDSCVYVYDLV-SGEQVAALKYH-TSPVRDCSWHPSQPMLVSS----SWDGDVVRWEFPGNG  480 (498)
Q Consensus       422 ~g~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~----~~Dg~i~iw~~~~~~  480 (498)
                      +...|+..+||.+. +++.+..+..+ .+.|..++++|+++.|+..    ...++|++||+.+++
T Consensus       335 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          335 EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            99999988887654 46666667655 6778899999999866633    234789999997754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=1.8e-15  Score=156.32  Aligned_cols=248  Identities=14%  Similarity=0.144  Sum_probs=164.5

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe----
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI----  199 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~----  199 (498)
                      +|...+..++|||||++||.+..++     .|++||+.+++........    ..+..++|+|||+.|++++.++.    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCccccc
Confidence            3555788999999999999876543     8999999998655432211    12567999999999999988765    


Q ss_pred             ------------EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----CCeEEEEE
Q 010883          200 ------------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYD  262 (498)
Q Consensus       200 ------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----dg~i~vwd  262 (498)
                                  |++|++.+++.........            ..|...+..+.|+|||++|+.++.     +..|++||
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d  265 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEecc------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence                        9999998775321111010            012335788999999999988765     56899999


Q ss_pred             CCC------Ce-eeEEEeccCCCeeEEEEeCCCCCEEEEeeCC----CeEEEEcCccccCCCc--eeEEeccccc--cEE
Q 010883          263 LEA------NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGK--PAGVLMGHLE--GIT  327 (498)
Q Consensus       263 ~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~--~~~~~~~~~~--~v~  327 (498)
                      +.+      +. ....+..+...+.. .|+ +++..|+..+..    +.|.+||+.    .+.  ....+..|..  .+.
T Consensus       266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~  339 (710)
T 2xdw_A          266 LQQESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFT----DPEESKWKVLVPEHEKDVLE  339 (710)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCEEE
T ss_pred             CcccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCC----CCCcccceeccCCCCCCeEE
Confidence            986      43 35666667666655 466 456655555443    369999986    332  2344444544  688


Q ss_pred             EEEEcCCCCEEEEEeCCCc--EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883          328 FIDSRGDGRYLISNGKDQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI  405 (498)
Q Consensus       328 ~l~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (498)
                      .+.|++++.++++...++.  |.+||+.+.                                  +.+..+..+.  ..+.
T Consensus       340 ~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g----------------------------------~~~~~l~~~~--~~v~  383 (710)
T 2xdw_A          340 WVACVRSNFLVLCYLHDVKNTLQLHDLATG----------------------------------ALLKIFPLEV--GSVV  383 (710)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEEECCCS--SEEE
T ss_pred             EEEEEcCCEEEEEEEECCEEEEEEEECCCC----------------------------------CEEEecCCCC--ceEE
Confidence            8999987788888888885  556666442                                  2333333332  1121


Q ss_pred             EEEeccccCCCCcEEEEE-e---cCCeEEEEECCCCc
Q 010883          406 RCHFSPVYSTGQKYIYTG-S---HDSCVYVYDLVSGE  438 (498)
Q Consensus       406 ~~~~~~~~s~~~~~l~~g-~---~dg~i~iwd~~~~~  438 (498)
                          .+.++|++..++.. +   ..+.|++||+.+++
T Consensus       384 ----~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          384 ----GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ----EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ----EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                22456677665543 2   24789999998877

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=1.4e-14  Score=132.87  Aligned_cols=249  Identities=9%  Similarity=0.068  Sum_probs=169.7

Q ss_pred             CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ...+..+.....+++|+|+|+ +++++..++.|..|+..++  .....   .+...+.+++++|+|+++++...++.|.+
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            344555666788999999998 7888888999999999887  33222   23346899999999998877766789999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE----Ee-------------CCCeEEEEECCC
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GS-------------SDDCIYVYDLEA  265 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~----g~-------------~dg~i~vwd~~~  265 (498)
                      ||..+++..........            .....+.+++++|+|+++++    |+             ..+.|+.++.. 
T Consensus        95 ~d~~~g~~~~~~~~~~~------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (296)
T 3e5z_A           95 QREPGGEWESIADSFEG------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-  161 (296)
T ss_dssp             ECSTTCCEEEEECEETT------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred             EcCCCCcEEEEeeccCC------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence            99988775433221110            01114678999999998776    32             13467777665 


Q ss_pred             CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCce---eEEeccccccEEEEEEcCCCCEEEEEe
Q 010883          266 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       266 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      ++ ...+..+......++|+ ++++.+++.+.++.|.+|++..   .+..   ...+..+...+..++++++|+++++. 
T Consensus       162 g~-~~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-  235 (296)
T 3e5z_A          162 GT-LSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNA---RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-  235 (296)
T ss_dssp             SC-EEEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECS---SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred             CC-EEEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECC---CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence            44 34455666778999997 7788777788889999999851   1222   22233344566789999999977666 


Q ss_pred             CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                       ++.|.+||...                                   +.+..+..+..   ...+.|.   +|+++.|++
T Consensus       236 -~~~v~~~~~~g-----------------------------------~~~~~~~~~~~---~~~~~f~---~~d~~~L~v  273 (296)
T 3e5z_A          236 -GDGVHVLTPDG-----------------------------------DELGRVLTPQT---TSNLCFG---GPEGRTLYM  273 (296)
T ss_dssp             -TTEEEEECTTS-----------------------------------CEEEEEECSSC---CCEEEEE---STTSCEEEE
T ss_pred             -CCeEEEECCCC-----------------------------------CEEEEEECCCC---ceeEEEE---CCCCCEEEE
Confidence             78899999763                                   44444444332   2222232   468888998


Q ss_pred             EecCCeEEEEECCCCcE
Q 010883          423 GSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       423 g~~dg~i~iwd~~~~~~  439 (498)
                      ++.+ .+.-++..+.+.
T Consensus       274 ~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          274 TVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EETT-EEEEEECSCCBC
T ss_pred             EcCC-eEEEEEcccccc
Confidence            8876 466667666543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.70  E-value=6.4e-16  Score=148.02  Aligned_cols=261  Identities=11%  Similarity=-0.006  Sum_probs=165.1

Q ss_pred             EEEECCCCeEEEEEeecCC--CceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccCC
Q 010883          156 RIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  230 (498)
Q Consensus       156 ~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
                      ...|..++..+..+.....  +...+..++|+|||++|+.+...   ..|.+|++.+++...+....             
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~-------------   79 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK-------------   79 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS-------------
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC-------------
Confidence            3446677755544322111  11226678999999999887653   47899999888754432211             


Q ss_pred             CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE-------------------EEEeCCCCCE
Q 010883          231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-------------------VCFGDESGHL  291 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~  291 (498)
                         ......+.|+|||+.|+.++.++.|++||+.+++.......+......                   +.|+ ++++.
T Consensus        80 ---~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~  155 (396)
T 3c5m_A           80 ---GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSW  155 (396)
T ss_dssp             ---CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSH
T ss_pred             ---CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC-CCCcc
Confidence               111223689999999999999999999999988765544434332222                   2344 45555


Q ss_pred             EEEe-----eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCCCcc
Q 010883          292 IYSG-----SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSNA  359 (498)
Q Consensus       292 l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~  359 (498)
                      ++..     ..+..|.+||+.    .++.. .+..+...+..+.|+| ++..|+..+.+      ..|.+||+....   
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~----~g~~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---  227 (396)
T 3c5m_A          156 EKFAEFYHTNPTCRLIKVDIE----TGELE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---  227 (396)
T ss_dssp             HHHHHHHHTCCCEEEEEEETT----TCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---
T ss_pred             eeeeeeccCCCcceEEEEECC----CCcEE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---
Confidence            5443     356789999986    44433 3335667889999999 78877766543      358888875421   


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-----CeEEEEEC
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----SCVYVYDL  434 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~  434 (498)
                                                      ...+..+....    ....+.|+|||++|+.++.+     +.|++||+
T Consensus       228 --------------------------------~~~l~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          228 --------------------------------VRKIKEHAEGE----SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             --------------------------------CEESSCCCTTE----EEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred             --------------------------------eeEeeccCCCc----cccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence                                            11111110001    12334778899988777654     45999999


Q ss_pred             CCCcEEEEeccCCCCeeeeEEcC-CCCeEEEEe----------------CCCcEEEecCCCCC
Q 010883          435 VSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSS----------------WDGDVVRWEFPGNG  480 (498)
Q Consensus       435 ~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~~----------------~Dg~i~iw~~~~~~  480 (498)
                      .+++...... .. ... +.|+| +|++|++++                .++.|++||+.++.
T Consensus       272 ~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          272 ETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             TTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             CCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            8887544332 11 233 89999 999888765                34789999987654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=1.5e-15  Score=156.47  Aligned_cols=250  Identities=12%  Similarity=0.042  Sum_probs=162.6

Q ss_pred             CCCCceEEEEEcCCCCEEEEE-----ECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe----
Q 010883          129 QTTSRAYVSQFSADGSLFVAG-----FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI----  199 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~----  199 (498)
                      +|...+..++|||||++||.+     +.+..|++||+.+++.+.. ......  ....++|+|||+.|++++.+..    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence            466679999999999999943     3456899999999854300 011111  1267899999999999998766    


Q ss_pred             ---------EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC
Q 010883          200 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEAN  266 (498)
Q Consensus       200 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg----~i~vwd~~~~  266 (498)
                               |++|++.++..........            ..+...+..+.|+|||++|+.++.++    .|++|+..++
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~  262 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHER------------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK  262 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECC------------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEec------------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence                     9999998876321111000            12333688999999999998887666    7888877665


Q ss_pred             eeeEEEeccCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCce--eEEeccc--cccEEEEEEcCCCCEEE
Q 010883          267 KLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKP--AGVLMGH--LEGITFIDSRGDGRYLI  339 (498)
Q Consensus       267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~--~~~~~~~--~~~v~~l~~~~~~~~l~  339 (498)
                      +. ..+..+...+....+. .++ +++.+.   .++.|.+||+.    .+..  ...+..+  ...+..++++ ++.+++
T Consensus       263 ~~-~~l~~~~~~~~~~~~~-~g~-l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~  334 (695)
T 2bkl_A          263 DF-RLLVKGVGAKYEVHAW-KDR-FYVLTDEGAPRQRVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV-GGHLSL  334 (695)
T ss_dssp             SC-EEEEECSSCCEEEEEE-TTE-EEEEECTTCTTCEEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred             ce-EEeecCCCceEEEEec-CCc-EEEEECCCCCCCEEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence            43 4555666667777774 444 555554   35889999986    3221  2333333  4457888888 677888


Q ss_pred             EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883          340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY  419 (498)
Q Consensus       340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  419 (498)
                      +...|+..+||.+...                                 +.....+..+..     .....+.++|+++.
T Consensus       335 ~~~~dg~~~l~~~~~~---------------------------------g~~~~~l~~~~~-----~~v~~~~~s~d~~~  376 (695)
T 2bkl_A          335 EYLKDATSEVRVATLK---------------------------------GKPVRTVQLPGV-----GAASNLMGLEDLDD  376 (695)
T ss_dssp             EEEETTEEEEEEEETT---------------------------------CCEEEECCCSSS-----SEECCCBSCTTCSE
T ss_pred             EEEECCEEEEEEEeCC---------------------------------CCeeEEecCCCC-----eEEEEeecCCCCCE
Confidence            8889998888865421                                 112222222110     01233467778876


Q ss_pred             EEEEe----cCCeEEEEECCCCcE
Q 010883          420 IYTGS----HDSCVYVYDLVSGEQ  439 (498)
Q Consensus       420 l~~g~----~dg~i~iwd~~~~~~  439 (498)
                      ++...    ..+.|++||+.+++.
T Consensus       377 l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          377 AYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEEcCCCCCCEEEEEECCCCcE
Confidence            66433    247899999988874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.69  E-value=1e-13  Score=130.65  Aligned_cols=290  Identities=11%  Similarity=-0.043  Sum_probs=184.3

Q ss_pred             EEcCCCCEEEEEEC--CC---eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEEE
Q 010883          138 QFSADGSLFVAGFQ--AS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHI  202 (498)
Q Consensus       138 ~~s~dg~~la~~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~i  202 (498)
                      ...|+++++.+...  ..   .|.+||..+++.+.....  + . .. .++++||+++++++.          .++.|.+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g-~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G-F-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C-C-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence            34477777666643  22   889999999876544322  2 1 22 899999999999886          3678999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEE-EeccCCCe
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDV  279 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~-~~~~~~~v  279 (498)
                      ||..+.+.............         .+......++|+|||++|+++..  ++.|.++| .+++.+.. +.. ..  
T Consensus       102 iD~~t~~~~~~i~~~~~~~~---------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~--  168 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAPRF---------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT--  168 (373)
T ss_pred             EECCCCcEEEEEECCCcccc---------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc--
Confidence            99988766544433200000         00013457899999999999874  47899999 99988776 532 22  


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-----ccccc-EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----GHLEG-ITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~-v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                       ++.+.|.....+++.+.||.+.++|. ...    ......     ....+ .....+.+++..++..+..+.+.+.|+.
T Consensus       169 -~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~  242 (373)
T 2mad_H          169 -CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             -eEEEEeCCCceEEEEcCCCCEEEEEC-CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence             24444555667778889999999998 322    211110     11122 1234566666555545577889999986


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce----eEEEEEEEeccccCCCCcEEEEEec----
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYSTGQKYIYTGSH----  425 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~g~~----  425 (498)
                      .....                                .+..+.....    ............++|+++.++++..    
T Consensus       243 ~~~~~--------------------------------v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~  290 (373)
T 2mad_H          243 AAGAT--------------------------------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             CCcce--------------------------------EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence            53211                                0111110000    0000000011246778888888654    


Q ss_pred             ------CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEe-CCCcEEEecCCCCCCCCC
Q 010883          426 ------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       426 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~-~Dg~i~iw~~~~~~~~~~  484 (498)
                            ++.|.++|+.+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+.+....
T Consensus       291 ~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          291 WKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             ccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                  35799999999999998863 34689999999999 788777 589999999988765543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.68  E-value=7.5e-13  Score=121.33  Aligned_cols=278  Identities=11%  Similarity=0.035  Sum_probs=185.8

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ....+.+++++++|+++++...++.|.+|+.. +... ... .......+..+++.++++++++...++.|..||.. ++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE-VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE-CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            45678999999999988887778999999988 5332 222 22233478999999999877776667889999987 54


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEeCCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDES  288 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~  288 (498)
                      .... ....              ....+.++++.++|+++++...++.|..+|.. ++.... +......+..+++. ++
T Consensus        94 ~~~~-~~~~--------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~  156 (300)
T 2qc5_A           94 FTEY-PLPQ--------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SD  156 (300)
T ss_dssp             EEEE-ECSS--------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TT
T ss_pred             eEEe-cCCC--------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CC
Confidence            4221 1110              11258899999999977777668899999987 554322 22344678899996 67


Q ss_pred             CCEEEEeeCCCeEEEEcCccccCCCcee-EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883          289 GHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      ++++++...++.|..||..     +... .....+...+..+++.++++++++....+.|.+||... .           
T Consensus       157 g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~-----------  219 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITNT-----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-E-----------  219 (300)
T ss_dssp             SSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-C-----------
T ss_pred             CCEEEEecCCCeEEEECCC-----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-c-----------
Confidence            7877776668899999973     2222 22223445688999999998777776677899998732 1           


Q ss_pred             ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE-EEeccC
Q 010883          368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-AALKYH  446 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~~~h  446 (498)
                                             . ..+.........    ..++++++|++.++...++.|..||. +++.. ..+...
T Consensus       220 -----------------------~-~~~~~~~~~~~~----~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~  270 (300)
T 2qc5_A          220 -----------------------I-SEYDIPTPNARP----HAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE  270 (300)
T ss_dssp             -----------------------E-EEEECSSTTCCE----EEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST
T ss_pred             -----------------------E-EEEECCCCCCCc----eEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc
Confidence                                   1 111000000111    22345668886666666789999998 45443 223334


Q ss_pred             CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      ...+.+++++++|.++++.. . .|..++.
T Consensus       271 ~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          271 NAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            56789999999998666554 4 6666654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=4.4e-14  Score=129.57  Aligned_cols=235  Identities=9%  Similarity=-0.004  Sum_probs=160.2

Q ss_pred             eEEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          178 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       178 ~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ...+++|+|+++ +++++..++.|..|+..++ .... ..                +...+.+++++++|+++++...++
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~-~~----------------~~~~~~~l~~~~dg~l~v~~~~~~   90 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPE-MH----------------PSHHQNGHCLNKQGHLIACSHGLR   90 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEE-ES----------------SCSSEEEEEECTTCCEEEEETTTT
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEE-EC----------------CCCCcceeeECCCCcEEEEecCCC
Confidence            577899999998 7777778899999999876 3221 11                122688999999999777776678


Q ss_pred             eEEEEECCCCeeeEEEecc----CCCeeEEEEeCCCCCEEEE----ee-------------CCCeEEEEcCccccCCCce
Q 010883          257 CIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYS----GS-------------DDNLCKVWDRRCLNVKGKP  315 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s----~s-------------~dg~i~vwd~~~~~~~~~~  315 (498)
                      .|.+||..+++........    ...+..+++. ++++++++    |+             ..+.|..++..      ..
T Consensus        91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~  163 (296)
T 3e5z_A           91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GT  163 (296)
T ss_dssp             EEEEECSTTCCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SC
T ss_pred             eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC------CC
Confidence            9999999888754333221    2356789997 78888887    33             13456666642      23


Q ss_pred             eEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE
Q 010883          316 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY  395 (498)
Q Consensus       316 ~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (498)
                      +..+..+......++|+|+++.+++.+.++.|.+||+.......                              .....+
T Consensus       164 ~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------------------------------~~~~~~  213 (296)
T 3e5z_A          164 LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------------------------------YQGVHF  213 (296)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------------------------------EEEEEE
T ss_pred             EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------------------------------CCCeEe
Confidence            34445566678899999999999777778999999986211000                              000111


Q ss_pred             ccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEE-cCCCCeEEEEeCCCcEEEe
Q 010883          396 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW-HPSQPMLVSSSWDGDVVRW  474 (498)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-sp~~~~l~s~~~Dg~i~iw  474 (498)
                      ..+..      ....++++++|++.++.  ++.|.+||.. ++.+..+..+.. +++++| .|+++.|++++.++ +..+
T Consensus       214 ~~~~~------~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~  282 (296)
T 3e5z_A          214 TVEPG------KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSI  282 (296)
T ss_dssp             CCSSS------CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEE
T ss_pred             eCCCC------CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEE
Confidence            10000      01233567789866665  8889999986 888888887777 999999 68999888888764 4444


Q ss_pred             cCCC
Q 010883          475 EFPG  478 (498)
Q Consensus       475 ~~~~  478 (498)
                      +..+
T Consensus       283 ~~~~  286 (296)
T 3e5z_A          283 ETNV  286 (296)
T ss_dssp             ECSC
T ss_pred             Eccc
Confidence            4433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=1.2e-14  Score=136.47  Aligned_cols=218  Identities=11%  Similarity=0.089  Sum_probs=150.9

Q ss_pred             eEEEEEeCCCCCeEEEEE---------CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883          178 TVTDTSLSPDQRHLVYAS---------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  248 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~  248 (498)
                      .+..+++  ||++++...         .++.|.+|++.+++...+                     ..+..++|+|||++
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------------------~~~~~~~~SpDg~~   72 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------------------ENATMPRISPDGKK   72 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---------------------ESCEEEEECTTSSE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---------------------ccCCCeEECCCCCE
Confidence            5677778  888887753         256799999988765333                     15788999999999


Q ss_pred             EEEEeCC---C--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC-------------------------
Q 010883          249 LVAGSSD---D--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-------------------------  298 (498)
Q Consensus       249 l~~g~~d---g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-------------------------  298 (498)
                      |+..+.+   +  .|++||+.+++..... .+.. +..++|+ ++++.|+.++.+                         
T Consensus        73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  149 (347)
T 2gop_A           73 IAFMRANEEKKVSEIWVADLETLSSKKIL-EAKN-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG  149 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEETTTTEEEEEE-EESE-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------
T ss_pred             EEEEEeccCCCcceEEEEECCCCceEEEE-cCCC-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence            9887754   2  4888899888765443 3334 9999998 778877777632                         


Q ss_pred             --CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCCCccccccCccccc
Q 010883          299 --NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-------AIKLWDIRKMSSNASCNLGFRSYE  369 (498)
Q Consensus       299 --g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~  369 (498)
                        ..|.+||+.    .+..+..+.. . .+..+.|+||| +++++..++       ...||.+.+               
T Consensus       150 ~~~~l~~~d~~----~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~---------------  207 (347)
T 2gop_A          150 EKTTFWIFDTE----SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED---------------  207 (347)
T ss_dssp             CEEEEEEEETT----TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---------------
T ss_pred             ccceEEEEECC----CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC---------------
Confidence              578899986    4444244444 3 78889999999 777776542       334444332               


Q ss_pred             ccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC--------CeEEEEECCCCcEEE
Q 010883          370 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--------SCVYVYDLVSGEQVA  441 (498)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~~~~~  441 (498)
                                          .....+..+   ..    ...+  ||||++|+.++.+        ..|++||  +++...
T Consensus       208 --------------------~~~~~l~~~---~~----~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~  256 (347)
T 2gop_A          208 --------------------GKEEKMFEK---VS----FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG  256 (347)
T ss_dssp             --------------------TEEEEEEEE---ES----EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred             --------------------CceEEeccC---cc----eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence                                111111111   01    1112  7799988887754        4788888  666655


Q ss_pred             EeccCCCCeee-eEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          442 ALKYHTSPVRD-CSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       442 ~~~~h~~~v~~-l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ....|...+.. +.|+ ++ ++++++.++.+++| +.
T Consensus       257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            55667778886 9999 88 99999999999999 87

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=5e-14  Score=127.14  Aligned_cols=187  Identities=12%  Similarity=0.103  Sum_probs=142.6

Q ss_pred             CCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccc
Q 010883          141 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH  220 (498)
Q Consensus       141 ~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~  220 (498)
                      ..+++|++++.++.|.+||.++|+.+.+.....  ...+.++.++|+|++|+  +.++.|..||. +++.........  
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~--   75 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK--GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA--   75 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCT--TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT--
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc--cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC--
Confidence            346889999999999999999998776654322  12578899999999888  45788999999 777655544311  


Q ss_pred             cCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEec------cCCCeeEEEEeCCCCCEEE
Q 010883          221 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIY  293 (498)
Q Consensus       221 ~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~  293 (498)
                                   ...+.++.+.++|+++++.+. ++.|..+|. +++.+..+..      +......+++. +++++++
T Consensus        76 -------------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv  140 (276)
T 3no2_A           76 -------------GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLV  140 (276)
T ss_dssp             -------------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEE
T ss_pred             -------------CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEE
Confidence                         125788999999999999887 778888886 6776666542      11234456665 7899999


Q ss_pred             EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      +...++.|..||.     .++.+..+... ..+..+...++++.++++..++.|..+|..++
T Consensus       141 ~~~~~~~v~~~d~-----~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          141 PLFATSEVREIAP-----NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             EETTTTEEEEECT-----TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred             EecCCCEEEEECC-----CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence            9999999999997     46777776654 34556778899999999988889999998863

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=2.4e-14  Score=129.34  Aligned_cols=240  Identities=8%  Similarity=-0.000  Sum_probs=160.9

Q ss_pred             eEEEEEeCCCCCeEE-EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          178 TVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ...+++++|++++++ +...++.|.+|+..+........                .+...+.+++++++|+++++.. ++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~p~~i~~~~~g~l~v~~~-~~   87 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF----------------NGLYQPQGLAVDGAGTVYVTDF-NN   87 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCC----------------CSCCSCCCEEECTTCCEEEEET-TT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEee----------------CCcCCcceeEECCCCCEEEEcC-CC
Confidence            578899999999666 44678899999976554322110                0112467899999998555554 88


Q ss_pred             eEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883          257 CIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG  335 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  335 (498)
                      .|.+||....... .+. .....+..+++. ++++++++...++.|.+|+..    ..............+..+++++++
T Consensus        88 ~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g  161 (270)
T 1rwi_B           88 RVVTLAAGSNNQT-VLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNSG  161 (270)
T ss_dssp             EEEEECTTCSCCE-ECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTT----CCSCEECCCCSCCSCCCEEECTTC
T ss_pred             EEEEEeCCCceEe-eeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECC----CceeEeeccccCCCceeEEEeCCC
Confidence            9999998766543 232 233578899997 678888777788999999764    222222222233467889999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883          336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST  415 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  415 (498)
                      +++++...++.|.+||.......                                  .......  ...    ..+++++
T Consensus       162 ~l~v~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~--~~p----~~i~~d~  201 (270)
T 1rwi_B          162 NVYVTDTDNNRVVKLEAESNNQV----------------------------------VLPFTDI--TAP----WGIAVDE  201 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEE----------------------------------ECCCSSC--CSE----EEEEECT
T ss_pred             CEEEEECCCCEEEEEecCCCceE----------------------------------eecccCC--CCc----eEEEECC
Confidence            97777777889999998752210                                  0000000  111    1235566


Q ss_pred             CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +|.++++...++.|.+||............+...+.+++++++|+++++...++.|+++++....
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            88777777778899999987655443322344578999999999988888899999999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.66  E-value=5e-14  Score=127.15  Aligned_cols=214  Identities=13%  Similarity=0.050  Sum_probs=159.3

Q ss_pred             CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883          187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      .+++|++++.++.|.+||.++++..........               ..+.++.++|+|++|+  +.++.|..||. ++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---------------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G   65 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---------------WECNSVAATKAGEILF--SYSKGAKMITR-DG   65 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---------------CCCCEEEECTTSCEEE--ECBSEEEEECT-TS
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---------------CCCcCeEECCCCCEEE--eCCCCEEEECC-CC
Confidence            467889999999999999999988665543210               1467889999999888  45778999999 88


Q ss_pred             eeeEEEecc-CCCeeEEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCCceeEEec------cccccEEEEEEcCCCCEE
Q 010883          267 KLSLRILAH-TSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYL  338 (498)
Q Consensus       267 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l  338 (498)
                      +.+.++..+ ...+.++.+. ++++++++.+. ++.|..+|.     .++.+..+.      .+......+.+.++|+++
T Consensus        66 ~~~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-----~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l  139 (276)
T 3no2_A           66 RELWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-----KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL  139 (276)
T ss_dssp             CEEEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-----TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred             CEEEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-----CCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence            888888764 3578888887 88999998887 778888875     455554443      222345566789999999


Q ss_pred             EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc
Q 010883          339 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK  418 (498)
Q Consensus       339 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  418 (498)
                      ++...++.|..||.. +                                  +.+..+......       +.....++|+
T Consensus       140 v~~~~~~~v~~~d~~-G----------------------------------~~~w~~~~~~~~-------~~~~~~~~g~  177 (276)
T 3no2_A          140 VPLFATSEVREIAPN-G----------------------------------QLLNSVKLSGTP-------FSSAFLDNGD  177 (276)
T ss_dssp             EEETTTTEEEEECTT-S----------------------------------CEEEEEECSSCC-------CEEEECTTSC
T ss_pred             EEecCCCEEEEECCC-C----------------------------------CEEEEEECCCCc-------cceeEcCCCC
Confidence            999999999999986 3                                  344444432211       1123345899


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeccCC------CCeeeeEEcCCCCeEEEEe
Q 010883          419 YIYTGSHDSCVYVYDLVSGEQVAALKYHT------SPVRDCSWHPSQPMLVSSS  466 (498)
Q Consensus       419 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~sp~~~~l~s~~  466 (498)
                      ++++++.++.|..+|..+|+.+..+..+.      ..+..++..++|.++++..
T Consensus       178 ~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          178 CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            99999888899999999999998886432      2277888899998887763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=9.7e-13  Score=130.37  Aligned_cols=301  Identities=11%  Similarity=0.071  Sum_probs=195.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEeecCCCceeEEEEEeC----CCCCeEEEEEC-CCeEEEE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLS----PDQRHLVYASM-SPIVHIV  203 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~s~-d~~i~iw  203 (498)
                      ...+..+.|||||++|++++.|+.|.+||+.  +++.+.....  +  .....++|+    |||++++++.. ++.|.|+
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi  271 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  271 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--C--CCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence            3456789999999999999999999999995  6655554332  1  146789999    69999888776 5899999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCcee-cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEE-EeccCCCee
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLR-ILAHTSDVN  280 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~-~~~~~~~v~  280 (498)
                      |..+.+............      .....|.. .+..+..++++..++ ....+|.|.++|....+.... .........
T Consensus       272 D~~t~~~~~~i~~~~~~~------~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~  345 (567)
T 1qks_A          272 DGETLEPKKIQSTRGMTY------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH  345 (567)
T ss_dssp             ETTTCCEEEEEECCEECT------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred             ECCCCcEEEEEecccccc------ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence            998877665444321100      00001111 577888898876544 445679999999987543221 113345667


Q ss_pred             EEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEecc-----ccc-cEEEEEEcCCCC-EEEEEe-CCCcEEEEe
Q 010883          281 TVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG-----HLE-GITFIDSRGDGR-YLISNG-KDQAIKLWD  351 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~-~v~~l~~~~~~~-~l~s~~-~dg~i~iwd  351 (498)
                      ++.|+ +++++|+++. .++.|.++|+.    .++.+..+.-     |.+ .+. + ++|++. .++++. .++.|.++|
T Consensus       346 d~~~~-pdgr~~~va~~~sn~V~ViD~~----t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid  418 (567)
T 1qks_A          346 DGGLD-GSHRYFITAANARNKLVVIDTK----EGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIG  418 (567)
T ss_dssp             EEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred             CceEC-CCCCEEEEEeCCCCeEEEEECC----CCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEec
Confidence            88997 6777776555 67899999997    5555444332     332 222 2 578744 444543 468999999


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec------
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------  425 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------  425 (498)
                      .........        .                   .+.+..+......      ......+|++++|++...      
T Consensus       419 ~~~~~~~~~--------~-------------------~kvv~~i~~~g~g------~~~i~~~p~~~~l~v~~~~~~~~~  465 (567)
T 1qks_A          419 TDPEGHPDN--------A-------------------WKILDSFPALGGG------SLFIKTHPNSQYLYVDATLNPEAE  465 (567)
T ss_dssp             CCTTTCTTT--------B-------------------TSEEEEEECSCSC------CCCEECCTTCSEEEEECTTCSSHH
T ss_pred             CCCCCCccc--------c-------------------CEEEEEEecCCCC------CEEEEeCCCCCeEEEecCCCCCcc
Confidence            876321100        0                   1334444432210      011245789999998763      


Q ss_pred             -CCeEEEEECCCC-----c-EEEEec--------cCCCCeeeeEEcCCCCeEEEEeC-----CCcEEEecCCCCCC
Q 010883          426 -DSCVYVYDLVSG-----E-QVAALK--------YHTSPVRDCSWHPSQPMLVSSSW-----DGDVVRWEFPGNGE  481 (498)
Q Consensus       426 -dg~i~iwd~~~~-----~-~~~~~~--------~h~~~v~~l~~sp~~~~l~s~~~-----Dg~i~iw~~~~~~~  481 (498)
                       .++|.++|+.+.     . ....+.        .....+..+.|+|+|+.+..+.+     ++.|.|+|..+.+.
T Consensus       466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence             358999999876     2 112331        12357899999999997666533     79999999877643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=8.3e-14  Score=129.52  Aligned_cols=261  Identities=10%  Similarity=0.020  Sum_probs=173.2

Q ss_pred             CCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccc
Q 010883          151 QASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA  227 (498)
Q Consensus       151 ~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (498)
                      .++.|.+||..+++.......   ..........+.+. ++++.++...++.|.+||..+++........          
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~----------   83 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF----------   83 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC----------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC----------
Confidence            378999999999854332211   11122346677773 4555555666799999999998875544211          


Q ss_pred             cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEEeCCCCCEEEEee-CCCeE
Q 010883          228 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGS-DDNLC  301 (498)
Q Consensus       228 ~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~s-~dg~i  301 (498)
                             ..+..++++++++.+++...++.|.+||..+++....+....     .....+++  .++.++++.. .++.|
T Consensus        84 -------~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           84 -------TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRI  154 (328)
T ss_dssp             -------SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEE
T ss_pred             -------CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEE
Confidence                   157889999998544444378999999999998877765332     14567777  3444444443 48999


Q ss_pred             EEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCCCccccccCccccccc
Q 010883          302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----------QAIKLWDIRKMSSNASCNLGFRSYEWD  371 (498)
Q Consensus       302 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~  371 (498)
                      .++|+.    ..+.+..+... .....+.++|+|++++++..+          +.|.++|..+.                
T Consensus       155 ~viD~~----t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----------------  213 (328)
T 3dsm_A          155 LKIDTE----TDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----------------  213 (328)
T ss_dssp             EEEETT----TTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----------------
T ss_pred             EEEECC----CCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC----------------
Confidence            999997    56666555432 345678899999977776654          78999998763                


Q ss_pred             ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE--eccCCCC
Q 010883          372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA--LKYHTSP  449 (498)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~  449 (498)
                                        +....+..... .    ....++++|++++|+++..  .|.+||+.+++....  +..+...
T Consensus       214 ------------------~v~~~~~~~~g-~----~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~  268 (328)
T 3dsm_A          214 ------------------TVEKQFKFKLG-D----WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK  268 (328)
T ss_dssp             ------------------EEEEEEECCTT-C----CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred             ------------------eEEEEEecCCC-C----CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence                              22222221100 0    1123467788999988765  899999988876321  1222456


Q ss_pred             eeeeEEcC-CCCeEEEE----eCCCcEEEecCC
Q 010883          450 VRDCSWHP-SQPMLVSS----SWDGDVVRWEFP  477 (498)
Q Consensus       450 v~~l~~sp-~~~~l~s~----~~Dg~i~iw~~~  477 (498)
                      ...++++| ++.++++.    ..++.|.+|+..
T Consensus       269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             eEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            88999999 45555665    578999999987

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.65  E-value=2.6e-14  Score=148.25  Aligned_cols=277  Identities=14%  Similarity=0.093  Sum_probs=173.8

Q ss_pred             cCCCCEEEEEECCCe---EEEEE--CC---CCeEEEEEe----ecCCCceeEEEEEeCCCCCeEEEEECC-----CeEEE
Q 010883          140 SADGSLFVAGFQASQ---IRIYD--VE---RGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHI  202 (498)
Q Consensus       140 s~dg~~la~~~~dg~---i~vw~--~~---~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i~i  202 (498)
                      +|||++++....++.   -.+|.  ..   .+. ...++    ...++...+..++|||||++|+.++.+     ..|++
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            489998887664432   44554  43   332 22221    122344578899999999999987654     36999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe--------------EEEEECCCCee
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC--------------IYVYDLEANKL  268 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~--------------i~vwd~~~~~~  268 (498)
                      ||+.+++..... ..                ...+..++|+|| +.|+.++.++.              |++|++.++..
T Consensus       194 ~dl~tg~~~~~~-~~----------------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~  255 (741)
T 1yr2_A          194 VGVADGKPLADE-LK----------------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS  255 (741)
T ss_dssp             EETTTCCEEEEE-EE----------------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG
T ss_pred             EECCCCCCCCcc-CC----------------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch
Confidence            999998764321 00                012357899999 98988876553              99999987753


Q ss_pred             --eEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCC-----eEEEEcCccccCCC--ceeEEeccccccEEEEEEcCCCCE
Q 010883          269 --SLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       269 --~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                        ...+.  .+...+..+.|+ +++++|+..+.++     .|++||+.    .+  .....+..+...+.... +|+|+.
T Consensus       256 ~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~-~~dg~~  329 (741)
T 1yr2_A          256 ADQPVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALIPDLKAQWDFV-DGVGDQ  329 (741)
T ss_dssp             GCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred             hCEEEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEecCCCCceEEEE-eccCCE
Confidence              22222  233458899998 7888887777544     89999986    33  21444555555555543 488988


Q ss_pred             EEEEeCC----CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          338 LISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       338 l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      |+..+.+    +.|.+||+.+.. .                               .....+..+..  .+..+    .+
T Consensus       330 l~~~s~~~~~~~~l~~~d~~~~~-~-------------------------------~~~~l~~~~~~--~l~~~----~~  371 (741)
T 1yr2_A          330 LWFVSGDGAPLKKIVRVDLSGST-P-------------------------------RFDTVVPESKD--NLESV----GI  371 (741)
T ss_dssp             EEEEECTTCTTCEEEEEECSSSS-C-------------------------------EEEEEECCCSS--EEEEE----EE
T ss_pred             EEEEECCCCCCCEEEEEeCCCCc-c-------------------------------ccEEEecCCCC--eEEEE----EE
Confidence            8877754    459999987521 0                               01111122211  11111    22


Q ss_pred             CCCCcEEEEEecCCeEEEEECC-CCcEEEEecc-CCCCeeeeEEcCCCCeEEEE----eCCCcEEEecCCCCC
Q 010883          414 STGQKYIYTGSHDSCVYVYDLV-SGEQVAALKY-HTSPVRDCSWHPSQPMLVSS----SWDGDVVRWEFPGNG  480 (498)
Q Consensus       414 s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~----~~Dg~i~iw~~~~~~  480 (498)
                      + ++.++++...|+..+||.+. +++.+..+.. +.+.|..++++|+++.|+..    ...++|++||+.+++
T Consensus       372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            2 56788888889987777554 4666666764 36778999999999855522    234789999987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.65  E-value=4.7e-13  Score=124.89  Aligned_cols=205  Identities=12%  Similarity=0.109  Sum_probs=143.3

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC----CeEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVH  201 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d----~~i~  201 (498)
                      .+..+...+.+++|+|+|++++++..++.|.+||..++...... .  .+...+.+++|+|+++++++...+    +.|.
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-V--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-e--CCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            44556667899999999998888888999999999887543321 1  233479999999999988777666    6899


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEecc
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAH  275 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~  275 (498)
                      +||..++.........              .+...+.+++++|+|+++++...      .+.|+.+|..+++.. .+..+
T Consensus       116 ~~d~~~~~~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~  180 (333)
T 2dg1_A          116 AATENGDNLQDIIEDL--------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQN  180 (333)
T ss_dssp             EECTTSCSCEEEECSS--------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEE
T ss_pred             EEeCCCCEEEEEEccC--------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecC
Confidence            9998877653221100              01226889999999987776543      356777777655543 33334


Q ss_pred             CCCeeEEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCceeE--------EeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883          276 TSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAG--------VLMGHLEGITFIDSRGDGRYLISNGKDQA  346 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~v~~l~~~~~~~~l~s~~~dg~  346 (498)
                      ...+..++|+ ++++.| ++.+.++.|.+||+...   +....        .+.++ ..+..++++++|+++++...++.
T Consensus       181 ~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~---g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~  255 (333)
T 2dg1_A          181 ISVANGIALS-TDEKVLWVTETTANRLHRIALEDD---GVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR  255 (333)
T ss_dssp             ESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTT---SSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCC---CcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE
Confidence            4567899997 677654 55556889999998521   11111        11222 36788999999998888878889


Q ss_pred             EEEEeCC
Q 010883          347 IKLWDIR  353 (498)
Q Consensus       347 i~iwd~~  353 (498)
                      |.+||..
T Consensus       256 v~~~d~~  262 (333)
T 2dg1_A          256 VLVFNKR  262 (333)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            9999974

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=8.9e-14  Score=125.57  Aligned_cols=241  Identities=10%  Similarity=0.030  Sum_probs=161.0

Q ss_pred             ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883          133 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       133 ~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~  211 (498)
                      ...+++++++|++++ +...++.|.+|+..++..  .. ........+.+++++++++++++.. ++.|.+||..+....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~--~~-~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--TV-LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-------EE-CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc--ce-EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            678999999999777 546788999999765422  11 1122223578899999999665554 889999998765432


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCE
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL  291 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  291 (498)
                      ....                .....+.++++.++|+++++...++.|.+|+..+.............+.++++. +++++
T Consensus       101 ~~~~----------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l  163 (270)
T 1rwi_B          101 VLPF----------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNV  163 (270)
T ss_dssp             ECCC----------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCE
T ss_pred             eeec----------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCE
Confidence            2110                011257899999999977777778899999876554432222333467889997 67787


Q ss_pred             EEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccc
Q 010883          292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD  371 (498)
Q Consensus       292 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  371 (498)
                      +++...++.|.+||..    ..........+...+..++++++|.++++...++.|.+||......              
T Consensus       164 ~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--------------  225 (270)
T 1rwi_B          164 YVTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--------------  225 (270)
T ss_dssp             EEEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--------------
T ss_pred             EEEECCCCEEEEEecC----CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--------------
Confidence            7777778999999986    3333222223336788999999998888777788999999865211              


Q ss_pred             ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                                           ...... .....    ..++++++|+++++...++.|++|++...+
T Consensus       226 ---------------------~~~~~~-~~~~p----~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          226 ---------------------TVLPFT-GLNTP----LAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             ---------------------EECCCC-SCSCE----EEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             ---------------------eeeccC-CCCCc----eeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence                                 000000 00111    223566789988888889999999986654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.64  E-value=1.8e-13  Score=127.23  Aligned_cols=292  Identities=14%  Similarity=0.049  Sum_probs=187.7

Q ss_pred             EEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEE
Q 010883          137 SQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVH  201 (498)
Q Consensus       137 ~~~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~  201 (498)
                      ....|+++.+++...     ++.|.+.|..+++.+..+.....   + . ++++|||++++++.          .++.|.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            345689988887765     67999999999977766544332   3 3 99999999988775          367899


Q ss_pred             EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCe
Q 010883          202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      +||..+.+.............         ........++|+|||++++++..  ++.|.++|+.+++.+.++....  .
T Consensus       113 viD~~t~~v~~~I~v~~g~r~---------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~  181 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRF---------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C  181 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCC---------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E
T ss_pred             EEECCCCeEEEEEECCCcccc---------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c
Confidence            999999887665543210000         00012446899999999998864  6899999999999988885321  1


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc----cccEE-EEEE-cCCCCEEEEEeCCCcEEEEeCC
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGIT-FIDS-RGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~v~-~l~~-~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                       ...+ |...+.+++.+.||.+.+.++...   ++.......+    ..++. ...| .++|++++ .+.+|.|.+.|+.
T Consensus       182 -~~~~-P~g~~~~~~~~~DG~~~~v~~~~~---g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~  255 (386)
T 3sjl_D          182 -YHIF-PTAPDTFFMHCRDGSLAKVAFGTE---GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS  255 (386)
T ss_dssp             -EEEE-EEETTEEEEEETTSCEEEEECCSS---SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred             -ceee-cCCCceeEEECCCCCEEEEECCCC---CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence             2233 566778888899999999998621   2222111111    11221 2355 36776555 5558999999987


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc---CceeEEEEEEEeccccCCCCcEEEEEec-----
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG---HSVLRTLIRCHFSPVYSTGQKYIYTGSH-----  425 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----  425 (498)
                      .......                             ..+..+..   ......  ...-...++++++.++....     
T Consensus       256 ~~~~~v~-----------------------------~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          256 SGDAKFL-----------------------------PAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             TSSCEEC-----------------------------CCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             CCcceee-----------------------------cceeccccccccccccC--CCcceeeECCCCCeEEEEecccccc
Confidence            6331110                             00000000   000000  00001134567888877653     


Q ss_pred             -----CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEE-eCCCcEEEecCCCCCCC
Q 010883          426 -----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSS-SWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       426 -----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~-~~Dg~i~iw~~~~~~~~  482 (498)
                           .+.|.++|+.+++.+..+..- ..+.+|++++|++ +|+++ ..++.|.++|..+++..
T Consensus       305 ~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence                 257999999999999988632 3688999999997 66665 45899999999877543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.62  E-value=1.7e-13  Score=129.79  Aligned_cols=290  Identities=12%  Similarity=0.007  Sum_probs=186.3

Q ss_pred             CCCCEEEEEECC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEEEEEC
Q 010883          141 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDV  205 (498)
Q Consensus       141 ~dg~~la~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~iwd~  205 (498)
                      ++++++++....     +.|.++|..+++.+..+.....   +  .++++||+++|+++.          .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            466666655542     6999999999977776654432   3  799999999988876          3678999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      .+.+......+......         ........++|+|||++++++..  ++.|.+.|+.+++.+.++....  .  ..
T Consensus       157 ~t~~vv~~I~v~g~~r~---------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~  223 (426)
T 3c75_H          157 VTFLPIADIELPDAPRF---------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YH  223 (426)
T ss_dssp             TTCCEEEEEEETTCCCC---------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EE
T ss_pred             CCCcEEEEEECCCcccc---------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--ee
Confidence            99887655543200000         00002345799999999999874  5789999999999988876321  1  22


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE----eccccccE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~v-~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      ..|.....+++.+.||.+.+.+..    .++....    +.....++ ..+.+.+++..++.....+.+.+.|+......
T Consensus       224 ~~p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~  299 (426)
T 3c75_H          224 IFPASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT  299 (426)
T ss_dssp             EEEEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred             eccCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE
Confidence            223444667777788888887774    2222211    11111111 13467888888877778899999998652211


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-eeEEEEEEEeccccCCCCcEEEEEec----------CC
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQKYIYTGSH----------DS  427 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg  427 (498)
                      ...                             ......... .............++|+++.+++...          ++
T Consensus       300 v~~-----------------------------~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~  350 (426)
T 3c75_H          300 FRA-----------------------------PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR  350 (426)
T ss_dssp             ECC-----------------------------CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred             Eee-----------------------------eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence            000                             000000000 00000000001245668887777643          35


Q ss_pred             eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEe-CCCcEEEecCCCCCCC
Q 010883          428 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEA  482 (498)
Q Consensus       428 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~-~Dg~i~iw~~~~~~~~  482 (498)
                      .|.++|+.+.+.+.++... .....++|+||++ +++++. .++.|.++|+.+.+..
T Consensus       351 ~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          351 FVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence            7999999999999988632 2588999999999 888887 5999999999887644

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=1.4e-13  Score=142.67  Aligned_cols=202  Identities=13%  Similarity=0.087  Sum_probs=134.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe-----
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI-----  199 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~-----  199 (498)
                      |...+..++|||||++||.+..+     ..|++||+.+++.+....    +...+..++|+|| +.|+.++.++.     
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence            44578899999999999987653     369999999986644311    1112357899999 99998887653     


Q ss_pred             ---------EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q 010883          200 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEA  265 (498)
Q Consensus       200 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-----~i~vwd~~~  265 (498)
                               |++|++.++..........            ..+...+..+.|+|||++|+..+.++     .|++||+.+
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFAT------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEecc------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence                     8899987765321111100            01222478899999999998877544     899999988


Q ss_pred             C--eeeEEEeccCCCeeEEEEeCCCCCEEEEeeC----CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE
Q 010883          266 N--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI  339 (498)
Q Consensus       266 ~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  339 (498)
                      +  +....+..+...+....+  +++..|+..+.    ++.|.+||+....  ......+..+...+..+.+. ++.+++
T Consensus       304 ~~~~~~~~l~~~~~~~~~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~  378 (741)
T 1yr2_A          304 GKIGPVTALIPDLKAQWDFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFA  378 (741)
T ss_dssp             TEECCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEE
T ss_pred             CCCcccEEecCCCCceEEEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEE
Confidence            7  314556566655555543  56666766665    3459999986211  23333444444556677887 566778


Q ss_pred             EEeCCCcEEEEeCC
Q 010883          340 SNGKDQAIKLWDIR  353 (498)
Q Consensus       340 s~~~dg~i~iwd~~  353 (498)
                      +...|+..+||.+.
T Consensus       379 ~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          379 SYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCEEEEEEEe
Confidence            88889887777654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=1.1e-11  Score=113.48  Aligned_cols=237  Identities=9%  Similarity=0.034  Sum_probs=162.3

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ..+.++++.++|+++++...++.|.+||.. ++...... ..              +...+.++++.++|.++++...++
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-~~--------------~~~~~~~i~~~~~g~l~v~~~~~~   78 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPL-PT--------------PDAKVMCLTISSDGEVWFTENAAN   78 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEC-SS--------------TTCCEEEEEECTTSCEEEEETTTT
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecC-Cc--------------ccCceeeEEECCCCCEEEeCCCCC
Confidence            468999999999977766667899999987 54432211 10              112688999999999777776688


Q ss_pred             eEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883          257 CIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD  334 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  334 (498)
                      .|..||.. ++. ..+.  .....+..+++. +++.++++...++.|.+||..    ..........+...+..+++.++
T Consensus        79 ~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~~----g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           79 KIGRITKK-GII-KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDD----GKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             EEEEECTT-SCE-EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECTT
T ss_pred             eEEEECCC-CcE-EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECCC----CCEEEecCCCCCCCCceEEEcCC
Confidence            99999986 333 2232  245678899996 678888877778899999973    21222222334457899999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      ++++++...++.|..||. +..                                   +..+.........    ...+++
T Consensus       152 g~l~v~~~~~~~i~~~~~-~g~-----------------------------------~~~~~~~~~~~~~----~~i~~~  191 (299)
T 2z2n_A          152 NALWFTENQNNAIGRITE-SGD-----------------------------------ITEFKIPTPASGP----VGITKG  191 (299)
T ss_dssp             SCEEEEETTTTEEEEECT-TCC-----------------------------------EEEEECSSTTCCE----EEEEEC
T ss_pred             CCEEEEeCCCCEEEEEcC-CCc-----------------------------------EEEeeCCCCCCcc----eeEEEC
Confidence            988887777788999998 421                                   1111000000111    123456


Q ss_pred             CCCcEEEEEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          415 TGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ++|++.++...++.|.+||. +++.... +..+...+.+++++++|.++++...++.|.+|+..
T Consensus       192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            68887776666889999999 6664332 33455678999999999977776677889999973

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=7.7e-13  Score=122.25  Aligned_cols=248  Identities=12%  Similarity=0.137  Sum_probs=162.0

Q ss_pred             eEEEEEeCCCCCeEEE-------EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEE
Q 010883          178 TVTDTSLSPDQRHLVY-------ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GREL  249 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~-------~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l  249 (498)
                      ...+++|+++++++++       ...++.|.+||..+++...... ..           ..++...+.+++++++ |+ |
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~-----------~~~~~~~~~~i~~~~~~g~-l   85 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PE-----------VNGYGGIPAGCQCDRDANQ-L   85 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CE-----------ETTEECCEEEEEECSSSSE-E
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cc-----------cCCCCCCCceEEEecCCCc-E
Confidence            4678999999987777       5678899999988776543221 00           0123346889999999 76 4


Q ss_pred             EEEeCCCeEEEEECCCCeeeEE-Eec----cCCCeeEEEEeCCCCCEEEEeeCC---------------CeEEEEcCccc
Q 010883          250 VAGSSDDCIYVYDLEANKLSLR-ILA----HTSDVNTVCFGDESGHLIYSGSDD---------------NLCKVWDRRCL  309 (498)
Q Consensus       250 ~~g~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~  309 (498)
                      .+++..+.|.+||.. ++.... ...    ....+.++++. ++++++++...+               +.|..||..  
T Consensus        86 ~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  161 (314)
T 1pjx_A           86 FVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--  161 (314)
T ss_dssp             EEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--
T ss_pred             EEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC--
Confidence            444445579999998 665322 211    12357899996 678877776655               567777753  


Q ss_pred             cCCCceeEEeccccccEEEEEEc----CCCCEEEEE-eCCCcEEEEeCCC-CCCccccccCcccccccceeecCCcCccc
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSR----GDGRYLISN-GKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARD  383 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~s~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (498)
                         +. ...+..+......++++    |+++.|+.+ ..++.|.+||+.. .....                        
T Consensus       162 ---g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------------  213 (314)
T 1pjx_A          162 ---GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------------  213 (314)
T ss_dssp             ---SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE------------------------
T ss_pred             ---CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc------------------------
Confidence               22 22233344557889999    999766554 5678999999752 10000                        


Q ss_pred             ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eE
Q 010883          384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-ML  462 (498)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l  462 (498)
                           ......+..+.. ...    ..++++++|++.++...++.|.+||..+++.+..+..+...+.+++|+|+++ ++
T Consensus       214 -----~~~~~~~~~~~~-~~p----~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          214 -----KKVWGHIPGTHE-GGA----DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             -----EEEEEECCCCSS-CEE----EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             -----ceEEEECCCCCC-CCC----CceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence                 001111111110 011    1235667898888887889999999987877777766667899999999999 44


Q ss_pred             EEEeCCCcEEEecCCCCC
Q 010883          463 VSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       463 ~s~~~Dg~i~iw~~~~~~  480 (498)
                      ++...++.|..|++....
T Consensus       284 v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          284 VTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEETTTTEEEEEECSSCB
T ss_pred             EEeCCCCeEEEEeCCCCC
Confidence            555567899999987543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=1.6e-12  Score=120.80  Aligned_cols=258  Identities=14%  Similarity=0.137  Sum_probs=165.9

Q ss_pred             EEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeecCCC----ceeEEEEEeCCCCCeEEEEEC--CCeE
Q 010883          137 SQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPIV  200 (498)
Q Consensus       137 ~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~s~--d~~i  200 (498)
                      +++||||++|+++.          .++.|.+||..+.+.+..+....+.    ......++|+|||++|+++..  ++.|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            99999999887765          3578999999998777665443211    113456899999999998874  6899


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEEEecc----
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAH----  275 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~----  275 (498)
                      .++|+.+++.........                  . ...+....+.+++.+.||.+.+.++.+ ++.......+    
T Consensus       163 sVID~~t~~vv~tI~v~g------------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~  223 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPD------------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  223 (386)
T ss_dssp             EEEETTTTEEEEEEECCS------------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             EEEECCCCcEEEEEECCC------------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence            999999998766554321                  1 112222445677777888888888876 5543222111    


Q ss_pred             CCCee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec----------cccccEEEEEEcCCCCEEEEEeC-
Q 010883          276 TSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----------GHLEGITFIDSRGDGRYLISNGK-  343 (498)
Q Consensus       276 ~~~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~~~l~s~~~-  343 (498)
                      ..++. ...|.++++++++ .+.+|.|++.|+....  .+....+.          -..+....++++++++.++.... 
T Consensus       224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~--~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~  300 (386)
T 3sjl_D          224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD--AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ  300 (386)
T ss_dssp             TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS--CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc--ceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence            11221 2466546665555 5568999999985221  11111111          01223345777999888877643 


Q ss_pred             ---------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          344 ---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       344 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                               ...|.+.|+.+.                                  +.+..+...       .-.+++.++
T Consensus       301 ~~~~~hk~~~~~V~viD~~t~----------------------------------kv~~~i~vg-------~~~~~lavs  339 (386)
T 3sjl_D          301 RDEWRHKTASRFVVVLDAKTG----------------------------------ERLAKFEMG-------HEIDSINVS  339 (386)
T ss_dssp             CCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEEC
T ss_pred             ccccccCCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcceEEEC
Confidence                     246889998873                                  333333321       223455788


Q ss_pred             CCCc-EEEEEec-CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883          415 TGQK-YIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       415 ~~~~-~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                      +|++ +|++... ++.|.++|..+++.+.++.. .+.-+.+.+++|
T Consensus       340 ~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~-~~~p~~l~~s~d  384 (386)
T 3sjl_D          340 QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ-LGHGPQVITTAD  384 (386)
T ss_dssp             SSSSCEEEEEETTTTEEEEEETTTCCEEEEECC-CCSSCCEEEECC
T ss_pred             CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC-CCCCceeEECCc
Confidence            8987 6777554 89999999999999999873 244456677766

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=2.3e-12  Score=119.69  Aligned_cols=248  Identities=9%  Similarity=-0.019  Sum_probs=163.2

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~  211 (498)
                      .....+++. +++++++...++.|.+||..+++.+.....    ...+..++++++++..++...++.|.+||..+++..
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            345667774 345556666679999999999877665521    235889999999855444447899999999988765


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCC
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG  289 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  289 (498)
                      .........           +.......+++  ++..|+++.  .++.|.++|+.+++.+..+... .....+++. +++
T Consensus       119 ~~i~~g~~~-----------~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~-~dG  183 (328)
T 3dsm_A          119 GYIECPDMD-----------MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMD-KYN  183 (328)
T ss_dssp             EEEECTTCC-----------TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEEC-TTS
T ss_pred             EEEEcCCcc-----------ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEc-CCC
Confidence            443322100           01112345566  344555554  4889999999999988777543 345778886 778


Q ss_pred             CEEEEeeCC----------CeEEEEcCccccCCCceeEEeccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          290 HLIYSGSDD----------NLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       290 ~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      ++++++..+          +.|.++|..    ..+....+... ......++++|+++.|+++..  .|.+||..+....
T Consensus       184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          184 KMWTITDGGYEGSPYGYEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP  257 (328)
T ss_dssp             EEEEEBCCBCTTCSSCBCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred             CEEEEECCCccCCccccCCceEEEEECC----CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence            777776654          789999986    55555554322 236789999999998887755  8999999764321


Q ss_pred             cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC-CCcEEEEE----ecCCeEEEEE
Q 010883          359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTG----SHDSCVYVYD  433 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g----~~dg~i~iwd  433 (498)
                      ...                             .   +...  ...    ...++++| ++.+.++.    ..++.|.+||
T Consensus       258 ~~~-----------------------------~---~~~~--~~~----p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          258 VRP-----------------------------F---LEFR--DTK----YYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             SSC-----------------------------S---BCCC--SSC----EEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             eee-----------------------------e---ecCC--CCc----eEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence            100                             0   0000  001    12235666 45555555    5688999999


Q ss_pred             CCCCcEEEEec
Q 010883          434 LVSGEQVAALK  444 (498)
Q Consensus       434 ~~~~~~~~~~~  444 (498)
                      .. ++.+.++.
T Consensus       300 ~~-g~~~~~i~  309 (328)
T 3dsm_A          300 PQ-GKLIDEFY  309 (328)
T ss_dssp             TT-CCEEEEEE
T ss_pred             CC-CCEEEEEE
Confidence            97 98888876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=1.3e-11  Score=113.82  Aligned_cols=205  Identities=18%  Similarity=0.210  Sum_probs=135.3

Q ss_pred             CCceEEEEEcCCCCEEEE-------EECCCeEEEEECCCCeEEEEEe-ecCCCceeEEEEEeCCC-CCeEEEEECCCeEE
Q 010883          131 TSRAYVSQFSADGSLFVA-------GFQASQIRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSPD-QRHLVYASMSPIVH  201 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~-------~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~  201 (498)
                      -....+++|+++|+++++       +..++.|.+|+..+++...... ...++...+..++++++ ++++++ +..+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence            345689999999998888       5678899999987775432111 00123346899999999 665544 4445799


Q ss_pred             EEECCCCceecc-ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------------CeEEEEECCC
Q 010883          202 IVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------DCIYVYDLEA  265 (498)
Q Consensus       202 iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---------------g~i~vwd~~~  265 (498)
                      +||.. ++.... .....   .         .....+.+++++++|+++++...+               +.|..||.. 
T Consensus        96 ~~d~~-g~~~~~~~~~~~---~---------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSE---G---------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             EEETT-SCEEECCSBCTT---S---------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             EEeCC-CCEEEEEeccCC---C---------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence            99988 665433 21110   0         111257899999999877766554               568888876 


Q ss_pred             CeeeEEEeccCCCeeEEEEe---CCCCC-EEEEeeCCCeEEEEcCccccCCCc-----eeEEecccc-ccEEEEEEcCCC
Q 010883          266 NKLSLRILAHTSDVNTVCFG---DESGH-LIYSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHL-EGITFIDSRGDG  335 (498)
Q Consensus       266 ~~~~~~~~~~~~~v~~~~~~---~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~~-~~v~~l~~~~~~  335 (498)
                      ++.. .+..+......++|+   +++++ ++++...++.|.+||+..   .+.     ....+..+. ..+..++++++|
T Consensus       162 g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G  237 (314)
T 1pjx_A          162 GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCCCCCCCceEECCCC
Confidence            5443 333444556888886   13454 445556789999999751   121     222333333 567889999999


Q ss_pred             CEEEEEeCCCcEEEEeCCC
Q 010883          336 RYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~  354 (498)
                      +++++...++.|.+||..+
T Consensus       238 ~l~v~~~~~~~i~~~d~~~  256 (314)
T 1pjx_A          238 NLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             CEEEEEETTTEEEEECTTC
T ss_pred             CEEEEEcCCCEEEEEcCCC
Confidence            9888888888999999874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.51  E-value=4.2e-12  Score=130.45  Aligned_cols=202  Identities=15%  Similarity=0.172  Sum_probs=134.3

Q ss_pred             CCCCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC-----
Q 010883          129 QTTSRAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----  198 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~-----  198 (498)
                      +|...+..++|||||++||.+.     ....|++||+.+++.+.....  .  .....++|+ |++.|+.++.+.     
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--D--VKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--E--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--C--ceeccEEEe-CCCEEEEEEecCccccc
Confidence            4566899999999999998543     235799999999875443211  1  013568899 999999998774     


Q ss_pred             --------eEEEEECCCCceeccccccccccCccccccCCCC-ceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCC
Q 010883          199 --------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG-YSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEA  265 (498)
Q Consensus       199 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~g~~l~~g~~----dg~i~vwd~~~  265 (498)
                              .|++|++.++..........            .. |...+..+.|+|||++|+....    ...|+++|+.+
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  268 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGA------------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ  268 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESC------------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEec------------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence                    49999988765321111110            01 2224678999999998866543    35899999987


Q ss_pred             Ce-eeEEEeccCCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCce--eEEeccccccEEEEEEcCCCCEEE
Q 010883          266 NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKP--AGVLMGHLEGITFIDSRGDGRYLI  339 (498)
Q Consensus       266 ~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~  339 (498)
                      +. ....+..+....... +++.++.+++....+   +.|..+|+.    .+..  ...+..|...+.  .|+++++.|+
T Consensus       269 ~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~--~~s~~g~~lv  341 (693)
T 3iuj_A          269 ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA----NPGPAHWRDLIPERQQVL--TVHSGSGYLF  341 (693)
T ss_dssp             TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred             CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC----CCCccccEEEecCCCCEE--EEEEECCEEE
Confidence            64 345566666666555 543555555555544   578999986    3222  345556666655  8889998887


Q ss_pred             EEeCCC---cEEEEeCCC
Q 010883          340 SNGKDQ---AIKLWDIRK  354 (498)
Q Consensus       340 s~~~dg---~i~iwd~~~  354 (498)
                      ....++   .|++||+..
T Consensus       342 ~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          342 AEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEEEETTEEEEEEECTTS
T ss_pred             EEEEECCeeEEEEEECCC
Confidence            766544   688888764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=6.2e-12  Score=120.26  Aligned_cols=201  Identities=10%  Similarity=0.077  Sum_probs=136.8

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC--eEEEEECCCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~--~i~iwd~~~~  208 (498)
                      -.....++|+++|+++++...++.|++||..++.... .... . . ... ++|+|+++.|+++..++  .|.+|+..++
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~-~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-F-K-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-C-C-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-C-C-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            3467899999999988888778999999998874332 2222 1 1 233 99999999999888766  7888887655


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE----EeccCCCe--eEE
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDV--NTV  282 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~----~~~~~~~v--~~~  282 (498)
                      ...........            .....+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..+
T Consensus       205 ~~~~~~g~~~~------------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i  272 (409)
T 3hrp_A          205 WAPTRIGQLGS------------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL  272 (409)
T ss_dssp             TCEEEEEECCT------------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred             ceeEEeeeccc------------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence            43211100000            0112567899999555566677788999999987764322    11222222  399


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc---------------cccEEEEEEcCCCCEEEEEe-CCCc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------------LEGITFIDSRGDGRYLISNG-KDQA  346 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---------------~~~v~~l~~~~~~~~l~s~~-~dg~  346 (498)
                      +|+|.++.++++-..++.|+.|+..     +. +..+.++               ......++++|+|+++++-. .++.
T Consensus       273 a~~p~~g~lyv~d~~~~~I~~~~~~-----g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~  346 (409)
T 3hrp_A          273 IYYFVDSNFYMSDQNLSSVYKITPD-----GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC  346 (409)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-----CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEecC-----CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence            9985467777777788999999974     22 2233222               23478999999999888877 7889


Q ss_pred             EEEEeCCC
Q 010883          347 IKLWDIRK  354 (498)
Q Consensus       347 i~iwd~~~  354 (498)
                      |+.||+..
T Consensus       347 I~~~~~~~  354 (409)
T 3hrp_A          347 LRKLDILD  354 (409)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            99999755

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.50  E-value=1.1e-10  Score=109.90  Aligned_cols=242  Identities=11%  Similarity=0.038  Sum_probs=155.8

Q ss_pred             EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeec-CCC---ceeEEEEEeCCCCCeEEEEEC--CCe
Q 010883          136 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI  199 (498)
Q Consensus       136 ~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~~~~sp~~~~l~~~s~--d~~  199 (498)
                      .++|||||++|+++.          .++.|.+||..+.+.+...... ...   ......++|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999999886          3678999999887666554332 000   113457999999999999874  478


Q ss_pred             EEEEECCCCceecc-ccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEe----
Q 010883          200 VHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL----  273 (498)
Q Consensus       200 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~----  273 (498)
                      |.++| .+++.... ....                    .++.+.|++ +.+++.+.||.+.++|. +++......    
T Consensus       150 v~viD-~t~~~~~~~i~~~--------------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~  207 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP--------------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM  207 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC--------------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence            99999 98876544 3221                    124455554 45566778999999999 777653322    


Q ss_pred             -ccCCCe-eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc----------ccccEEEEEEcCCCCEEEEE
Q 010883          274 -AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRYLISN  341 (498)
Q Consensus       274 -~~~~~v-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~l~s~  341 (498)
                       ....++ ....+.+.++.++++ +..+.+.+.|+....  ...+..+.-          .......+.++|+++.++++
T Consensus       208 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~  284 (373)
T 2mad_H          208 LTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAG--ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             ccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCc--ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence             111221 234455333444444 467899999985211  111122210          11234457889998887775


Q ss_pred             eC----------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883          342 GK----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP  411 (498)
Q Consensus       342 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (498)
                      ..          ++.|.++|+.+.                                  +.+..+....       ..+.+
T Consensus       285 ~~~~~~~~~~~~~~~V~VID~~t~----------------------------------~vv~~i~~g~-------~p~~i  323 (373)
T 2mad_H          285 TSEQSAWKLHAAAKEVTSVTGLVG----------------------------------QTSSQISLGH-------DVDAI  323 (373)
T ss_pred             eccCCcccccCCCCeEEEEECCCC----------------------------------EEEEEEECCC-------CcCeE
Confidence            43          357999998773                                  3334443221       12445


Q ss_pred             ccCCCCc-EEEEEe-cCCeEEEEECCCCcEEEEe
Q 010883          412 VYSTGQK-YIYTGS-HDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       412 ~~s~~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~  443 (498)
                      .|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus       324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            7888999 788777 4899999999999999884

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=1.2e-11  Score=113.18  Aligned_cols=231  Identities=9%  Similarity=0.045  Sum_probs=146.2

Q ss_pred             eEEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          178 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       178 ~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      -.....|+|++. ++++...++.|..||..++..... ..                 ...+.+++++++|++++ +. ++
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----------------~~~~~~i~~~~dG~l~v-~~-~~   73 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM-----------------DAPVSSVALRQSGGYVA-TI-GT   73 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC-----------------SSCEEEEEEBTTSSEEE-EE-TT
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC-----------------CCceEEEEECCCCCEEE-EE-CC
Confidence            356788999655 455555678999999988764221 11                 12688999999999544 44 56


Q ss_pred             eEEEEECCCCeeeEEEecc----CCCeeEEEEeCCCCCEEEEeeCC---------CeEEEEcCccccCCCceeEEecccc
Q 010883          257 CIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYSGSDD---------NLCKVWDRRCLNVKGKPAGVLMGHL  323 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~  323 (498)
                      .|.+||..+++........    ...++.+++. ++++++++....         ..-.+|.+..   .+. ...+..+.
T Consensus        74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~---~g~-~~~~~~~~  148 (297)
T 3g4e_A           74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLFP---DHH-VKKYFDQV  148 (297)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEECT---TSC-EEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEEC---CCC-EEEEeecc
Confidence            7999999888754332221    2347889996 778866654321         2234444431   222 22333344


Q ss_pred             ccEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883          324 EGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR  402 (498)
Q Consensus       324 ~~v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (498)
                      ...+.++|+|+++.|+ +.+.++.|.+||+.........                           .+.+..+....  .
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~---------------------------~~~~~~~~~~~--~  199 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN---------------------------RRSVYKLEKEE--Q  199 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE---------------------------EEEEEECCGGG--C
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC---------------------------cEEEEECCCCC--C
Confidence            5678999999998765 4555788999997421100000                           01111121111  1


Q ss_pred             EEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc-CCCCeEEEEe
Q 010883          403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSS  466 (498)
Q Consensus       403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~~  466 (498)
                      ..    ..++++++|++.++....+.|..||..+++.+..+..+...+++++|. |+++.|+.++
T Consensus       200 ~p----~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          200 IP----DGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EE----EEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CC----CeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            11    223566789888777778899999999999999988777789999998 8888554443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.50  E-value=4e-12  Score=121.60  Aligned_cols=239  Identities=10%  Similarity=0.151  Sum_probs=158.0

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-  256 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-  256 (498)
                      ....++|+|+++++++...++.|++||..++..........                 ... ++|+++++.|+++..++ 
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-----------------~~~-ia~~~~g~~l~~~d~~~~  193 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-----------------GGK-PAVTKDKQRVYSIGWEGT  193 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-----------------BCB-CEECTTSSEEEEEBSSTT
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-----------------CCc-eeEecCCCcEEEEecCCC
Confidence            58899999999977777777899999998877654432210                 223 89999999998888765 


Q ss_pred             -eEEEEECCCCeeeEEE----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE----eccccccE-
Q 010883          257 -CIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI-  326 (498)
Q Consensus       257 -~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~v-  326 (498)
                       .|++++...+.....+    ......+.++++.|.++. |+.+..++.|+.||..    .......    ..++...- 
T Consensus       194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~----~~~~~~~~~~~~~g~~~~~P  268 (409)
T 3hrp_A          194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVK----TQEVTLIKQLELSGSLGTNP  268 (409)
T ss_dssp             CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETT----TCCEEEEEECCCCSCCCCSS
T ss_pred             ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECC----CCCEEEEecccccCCCCCCc
Confidence             8999998766543333    224567789999743554 4457778999999986    3322211    11222222 


Q ss_pred             -EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-----
Q 010883          327 -TFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-----  399 (498)
Q Consensus       327 -~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  399 (498)
                       ..++|+|+ +.++++-..++.|+.|+.....                                    ..+.++.     
T Consensus       269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------------------------------------~~~~g~~~~~g~  312 (409)
T 3hrp_A          269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------------------------------------EWFCGSATQKTV  312 (409)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCCE------------------------------------EEEEECTTCCSC
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------------------------------------EEEEeCCCCCCc
Confidence             38999995 5666666677889999876420                                    0110000     


Q ss_pred             -e---eEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEEeccC---------------CCCeeeeEEcCCC
Q 010883          400 -V---LRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYH---------------TSPVRDCSWHPSQ  459 (498)
Q Consensus       400 -~---~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h---------------~~~v~~l~~sp~~  459 (498)
                       .   ..........++++++|+++++-+ .++.|+.||+.++.. ..+.++               -.....+++++++
T Consensus       313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g  391 (409)
T 3hrp_A          313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG  391 (409)
T ss_dssp             BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred             CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence             0   000000112346677999777777 789999999877764 333333               2357899999998


Q ss_pred             CeEEEEeCCCcEEEecC
Q 010883          460 PMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       460 ~~l~s~~~Dg~i~iw~~  476 (498)
                      .++++-..++.|+.+++
T Consensus       392 ~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          392 GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEESTTCEEEEEEE
T ss_pred             CEEEEECCCCeEEEEEe
Confidence            88888888888888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.49  E-value=3.2e-10  Score=103.65  Aligned_cols=237  Identities=9%  Similarity=0.009  Sum_probs=160.9

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ..+.++++.+++++.++...++.|.+|+.. ++.... ...              .....+.++++.++|.++++...++
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~   83 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF-EVP--------------TPDAKVMCLIVSSLGDIWFTENGAN   83 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-ECS--------------STTCCEEEEEECTTSCEEEEETTTT
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE-ECC--------------CCCCcceeEEECCCCCEEEEecCCC
Confidence            468899999999987777678999999987 554321 111              0112688999999998777766678


Q ss_pred             eEEEEECCCCeeeE-EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee-EEeccccccEEEEEEcCC
Q 010883          257 CIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGD  334 (498)
Q Consensus       257 ~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~  334 (498)
                      .|..||.. ++... .+......+.++++. ++++++++...++.|..||..     +... ..+......+..+++.++
T Consensus        84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-----GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             EEEEECTT-SCEEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-----SCEEEEECSSTTCCEEEEEECTT
T ss_pred             eEEEECCC-CCeEEecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-----CCEEEccCCCCCCCceeEEECCC
Confidence            89999988 55432 222234678899996 678888777778899999974     2222 223334467899999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      ++++++...++.|..||... .                                  .. .+.........    ...+++
T Consensus       157 g~l~v~~~~~~~i~~~~~~g-~----------------------------------~~-~~~~~~~~~~~----~~i~~d  196 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITNTG-K----------------------------------LE-EYPLPTNAAAP----VGITSG  196 (300)
T ss_dssp             SSEEEEETTTTEEEEECTTC-C----------------------------------EE-EEECSSTTCCE----EEEEEC
T ss_pred             CCEEEEecCCCeEEEECCCC-c----------------------------------EE-EeeCCCCCCCc----ceEEEC
Confidence            99777666678899998732 1                                  11 11110000111    122455


Q ss_pred             CCCcEEEEEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          415 TGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ++|++.++....+.|.+||. +++.... +..+...+.+++++++|.++++...++.|..|+..
T Consensus       197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            67877776666788999998 5554332 33455678999999999977777667889999873

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=1.4e-11  Score=115.26  Aligned_cols=284  Identities=9%  Similarity=-0.022  Sum_probs=170.3

Q ss_pred             CceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEe----ecCCCceeEEEEEeCCCCCeEEEEEC-----CCeE
Q 010883          132 SRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASM-----SPIV  200 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~--dg~i~vw~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~s~-----d~~i  200 (498)
                      .....++++|+|+++++...  ++.++||.+.++. +....    ....+-..+..++++|+++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            57889999999999888642  3435566655553 22111    11123457999999999986665443     5789


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEe---CCCeEEEEECCCCeeeEEEeccC
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGS---SDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~---~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                      .+||+.+++...........          ..+...+..+++++++..+ ++..   .++.|.+||+.+++....+..|.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~  165 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPI----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP  165 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTT----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred             EEEECCCCeEEEEEECChhh----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence            99999988755444332110          0112246789999865455 4444   57899999999888766554442


Q ss_pred             CCee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-cEEEEeCCC
Q 010883          277 SDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRK  354 (498)
Q Consensus       277 ~~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~  354 (498)
                      .... ...+. .++..+.+.+.+|.++.|.                  ..+..|+++|+++.|+.+..++ .+..++...
T Consensus       166 ~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~  226 (343)
T 2qe8_A          166 GIAPEDIDLV-IDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD  226 (343)
T ss_dssp             TTSCCSCCCE-ETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred             ccccccccee-ECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence            2111 12333 3455666666777765553                  2356899999999888887766 444444221


Q ss_pred             CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883          355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL  434 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~  434 (498)
                      ..... .  ..               . .+.    ..+... ++..      ....++++++|+++++...++.|.+||.
T Consensus       227 ~~~~~-~--~~---------------~-~~~----~~~~~~-g~~g------~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          227 LSNLQ-L--TD---------------A-ELG----SKIERY-SEKP------ICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HTCTT-C--CH---------------H-HHH----TTCEEE-EECC------SCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             hcCCC-C--Ch---------------h-hhh----cceEec-ccCC------CCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            00000 0  00               0 000    000000 0000      0122356778999888888999999998


Q ss_pred             CCCcEEEEecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          435 VSGEQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       435 ~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      .+++....... +...+.+++|.+++.++++.+..+.+.+|.
T Consensus       277 ~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          277 ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             TTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            56664333321 245688999999999888887666555554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=2e-12  Score=120.72  Aligned_cols=175  Identities=14%  Similarity=0.060  Sum_probs=128.3

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--------EEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      +++.+++++...++++|+.++ +++|++.....        .... ....+.. |+.++|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999885 66798653210        1110 1112444 999999  99999998 889999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      +.+........                .|..++.++.+.+..  +++++.||.|.+||+.++....    +...|+|++|
T Consensus       113 v~sl~~~~~~~----------------~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W  170 (388)
T 1xip_A          113 LEELSEFRTVT----------------SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV  170 (388)
T ss_dssp             SSSTTCEEEEE----------------ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred             chhhhccCccc----------------eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence            97654322111                122257777777543  8889999999999999877643    4568999999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCce--eEEe------c---cccccEEEEEEcCCCCEEEEEe
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVL------M---GHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~------~---~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      + +++  ++.|..||++++|+..    ....  ...+      .   +|...|.+|.|.+++.++++-.
T Consensus       171 S-pkG--~~vg~~dg~i~~~~~~----~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          171 T-NSQ--LAVLLKDRSFQSFAWR----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             C-SSE--EEEEETTSCEEEEEEE----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             c-CCc--eEEEEcCCcEEEEcCC----CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            8 666  6789999999999875    3332  3444      2   3678899999999998888643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=4.3e-12  Score=118.51  Aligned_cols=172  Identities=16%  Similarity=0.118  Sum_probs=127.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------ee-EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEc
Q 010883          236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------LS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD  305 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~-~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd  305 (498)
                      ++..+++++...++++|+.++ +.+|++....         .. .....+.. |+.++|   ++.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence            588899999999999999885 6679875433         11 12234666 999999   67889888 889999999


Q ss_pred             CccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883          306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK  385 (498)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (498)
                      ++..    ........|..++.++.+.+.  .++++..||.|.+||+....                             
T Consensus       113 v~sl----~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~-----------------------------  157 (388)
T 1xip_A          113 LEEL----SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-----------------------------  157 (388)
T ss_dssp             SSST----TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-----------------------------
T ss_pred             chhh----hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-----------------------------
Confidence            9833    344455566777888877654  38889999999999998632                             


Q ss_pred             CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE--EEEe------c---cCCCCeeeeE
Q 010883          386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAAL------K---YHTSPVRDCS  454 (498)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~l~  454 (498)
                           ...          ......+.+|||+|  ++.|..||.+++|+...++.  ..++      .   +|...|.++.
T Consensus       158 -----~~~----------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~  220 (388)
T 1xip_A          158 -----TKQ----------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT  220 (388)
T ss_dssp             -----EEE----------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE
T ss_pred             -----ccc----------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE
Confidence                 111          01112234677788  67899999999999887775  5566      2   4788999999


Q ss_pred             EcCCCCeEEEE
Q 010883          455 WHPSQPMLVSS  465 (498)
Q Consensus       455 ~sp~~~~l~s~  465 (498)
                      |.+++.+|++=
T Consensus       221 wl~~~~flv~y  231 (388)
T 1xip_A          221 ILSPQDFLAVF  231 (388)
T ss_dssp             ESSSSEEEEEE
T ss_pred             EecCCeEEEEE
Confidence            99999888763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.43  E-value=3.9e-12  Score=118.53  Aligned_cols=270  Identities=9%  Similarity=-0.078  Sum_probs=167.7

Q ss_pred             eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEEEEECCCCceeccccccccccCc
Q 010883          154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDGL  223 (498)
Q Consensus       154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (498)
                      +|.++|..+++.+..+.....   +  .+.++||++++.++.          .++.|.+||..+++............  
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~---P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~--  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL---S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR--  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT---C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred             eEEEEECCCCeEEEEEeCCCC---C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence            888999999987776554433   3  699999999999886          36789999999998876654431000  


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEE--EECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN  299 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  299 (498)
                       +..      ......++++|||++++++..  +..|.+  +|+.+   +..+..- +.   +.+.|.....+++.+.||
T Consensus       120 -~~~------g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg  185 (368)
T 1mda_H          120 -FSV------GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPA  185 (368)
T ss_dssp             -CCB------SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTT
T ss_pred             -ccc------CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCC
Confidence             000      002346899999999998874  467888  88877   3444321 11   122334556677778889


Q ss_pred             eEEEEcCccccCC-CceeE----EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccccee
Q 010883          300 LCKVWDRRCLNVK-GKPAG----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW  374 (498)
Q Consensus       300 ~i~vwd~~~~~~~-~~~~~----~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  374 (498)
                      .+.+.|+...... ++...    .+.-...+.   . .+++..++..+. +.+.+.|+......                
T Consensus       186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~----------------  244 (368)
T 1mda_H          186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT----------------  244 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE----------------
T ss_pred             CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce----------------
Confidence            8888888620000 11110    011112333   3 566666666666 89999998652110                


Q ss_pred             ecCCcCcccccCCCCceEEEEccCc----eeEEEEEEEeccccCCCCcEEEEEec-C--------CeEEEEECCCCcEEE
Q 010883          375 MDYPPQARDLKHPCDQSVATYKGHS----VLRTLIRCHFSPVYSTGQKYIYTGSH-D--------SCVYVYDLVSGEQVA  441 (498)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~g~~-d--------g~i~iwd~~~~~~~~  441 (498)
                                      .+..+....    .............++||++.++++.. +        +.+.++|+.+++.+.
T Consensus       245 ----------------v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~  308 (368)
T 1mda_H          245 ----------------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             ----------------EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             ----------------EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence                            000000000    00000000000246778888887644 2        356799999999999


Q ss_pred             EeccCCCCeeeeEEcCCCC-eEEEEe-CCCcEEEecCCCCCCC
Q 010883          442 ALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEA  482 (498)
Q Consensus       442 ~~~~h~~~v~~l~~sp~~~-~l~s~~-~Dg~i~iw~~~~~~~~  482 (498)
                      .+.... ....++|+||++ .+++.. .++.|.++|+.+.+..
T Consensus       309 ~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          309 PISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             CCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             EEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            887443 588999999998 566666 5999999999877543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=1.8e-10  Score=105.33  Aligned_cols=198  Identities=11%  Similarity=0.052  Sum_probs=130.5

Q ss_pred             ceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883          133 RAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       133 ~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~  211 (498)
                      -.-+..|+|++ .++++...++.|..||..++... . ..   ....+.+++++|+++++++ . ++.|.+||..+++..
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~-~~---~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R-VT---MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-EE---CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-Ee---CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            44578899965 55666667889999999887432 1 11   2236899999999995554 4 568999999887754


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEeccCCCee
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVN  280 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~  280 (498)
                      ........            .....+.+++++|+|+++++...           .+.|+.++.. ++. ..+..+....+
T Consensus        87 ~~~~~~~~------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pn  152 (297)
T 3g4e_A           87 VLATVDND------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISN  152 (297)
T ss_dssp             EEEECCTT------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEE
T ss_pred             EEEecCCC------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeecccccc
Confidence            43322110            01235889999999996655422           2344444443 333 33334445678


Q ss_pred             EEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCc-----eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          281 TVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       281 ~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .++|+ ++++.| ++.+.++.|.+||+...  .+.     ....+..+......++++++|++.++...++.|.+||..+
T Consensus       153 gi~~s-pdg~~lyv~~~~~~~i~~~~~d~~--~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t  229 (297)
T 3g4e_A          153 GLDWS-LDHKIFYYIDSLSYSVDAFDYDLQ--TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT  229 (297)
T ss_dssp             EEEEC-TTSCEEEEEEGGGTEEEEEEECTT--TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred             ceEEc-CCCCEEEEecCCCCcEEEEeccCC--CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            99998 667655 55666889999987311  222     2223333445678999999999888887888899999875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=6.2e-10  Score=103.18  Aligned_cols=224  Identities=15%  Similarity=0.118  Sum_probs=140.8

Q ss_pred             EEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          179 VTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       179 v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      .....|+|++. ++++...++.|..||..+++.... ..                 ...+.+++|+++|+++++. .+ .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----------------~~~v~~i~~~~dg~l~v~~-~~-g  110 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-AL-----------------PFMGSALAKISDSKQLIAS-DD-G  110 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC-----------------SSCEEEEEEEETTEEEEEE-TT-E
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EC-----------------CCcceEEEEeCCCeEEEEE-CC-C
Confidence            45678999755 455555678999999988764321 11                 1158899999999866654 44 4


Q ss_pred             EEEEECCCCeeeEEEec---c-CCCeeEEEEeCCCCCEEEEeeC------CCeEEEEcCccccCCCceeEEeccccccEE
Q 010883          258 IYVYDLEANKLSLRILA---H-TSDVNTVCFGDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGIT  327 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  327 (498)
                      |.+||..+++.......   . ...++++++. ++++++++...      .+.|..++ .     ++ +..+..+.....
T Consensus       111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~-~-----g~-~~~~~~~~~~~~  182 (326)
T 2ghs_A          111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA-K-----GK-VTKLFADISIPN  182 (326)
T ss_dssp             EEEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE-T-----TE-EEEEEEEESSEE
T ss_pred             EEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe-C-----Cc-EEEeeCCCcccC
Confidence            99999988875432211   1 1357889997 67777665442      23454444 2     22 222223344577


Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          328 FIDSRGDGRYLISN-GKDQAIKLWDIR--KM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       328 ~l~~~~~~~~l~s~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      .++|+|+++.|+.+ +.++.|.+||+.  +. ....                             ...+..+.....  .
T Consensus       183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------------------------~~~~~~~~~~~~--~  231 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------------------------AEVFIDSTGIKG--G  231 (326)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------------------------CEEEEECTTSSS--E
T ss_pred             CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----------------------------ceEEEECCCCCC--C
Confidence            89999999877554 456889999986  22 1000                             011111111110  1


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc-CCCCeEEEEe
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSS  466 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~~  466 (498)
                      .    ...+++++|++.++...++.|.+||. +++.+..+..+...+++++|+ |++..|+.++
T Consensus       232 p----~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          232 M----DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             E----EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             C----CeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            1    12345668887777767789999998 677777777777789999998 8887665443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.39  E-value=1.6e-10  Score=106.23  Aligned_cols=204  Identities=11%  Similarity=0.052  Sum_probs=130.9

Q ss_pred             CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI  202 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i  202 (498)
                      ...+...........|+|+|+ +++++..++.|..|+.. +. ......   ....+..++++++|+++++...++.|.+
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~---~~~~~~gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD---ATAFTNGNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE---SCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC---CCCccceeeECCCCCEEEEECCCCEEEE
Confidence            334444555677899999998 56667778999999984 43 222222   2336889999999997766555678999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE----EeC-------------CCeEEEEECCC
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GSS-------------DDCIYVYDLEA  265 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~----g~~-------------dg~i~vwd~~~  265 (498)
                      |+.. ++.........   +         .....+.++++.++|+++++    |..             .+.|+.+|..+
T Consensus       112 ~~~~-g~~~~~~~~~~---~---------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~  178 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYA---G---------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG  178 (305)
T ss_dssp             ECTT-SCEEEEECEET---T---------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred             ECCC-CCEEEEEeccC---C---------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence            9986 54432221110   0         00114678999999997775    332             35688888877


Q ss_pred             CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC------CeEEEEcCccccCCCce--eEEe-ccccccEEEEEEcCCCC
Q 010883          266 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKP--AGVL-MGHLEGITFIDSRGDGR  336 (498)
Q Consensus       266 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~--~~~~-~~~~~~v~~l~~~~~~~  336 (498)
                      ++.....  .....+.++|+ ++++.|+.+...      +.|.+|++.    ....  ...+ .........++++++|+
T Consensus       179 g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~----~~~l~~~~~~~~~~~~~pdgi~~d~~G~  251 (305)
T 3dr2_A          179 SPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWR----DGALHDRRHFASVPDGLPDGFCVDRGGW  251 (305)
T ss_dssp             CCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEE----TTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred             CcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEec----CCCccCCeEEEECCCCCCCeEEECCCCC
Confidence            7654333  44567889997 778877776665      789999986    2221  1111 11223345688999999


Q ss_pred             EEEEEeCCCcEEEEeCCC
Q 010883          337 YLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       337 ~l~s~~~dg~i~iwd~~~  354 (498)
                      +.++ ..+ .|.+|+...
T Consensus       252 lwv~-~~~-gv~~~~~~g  267 (305)
T 3dr2_A          252 LWSS-SGT-GVCVFDSDG  267 (305)
T ss_dssp             EEEC-CSS-EEEEECTTS
T ss_pred             EEEe-cCC-cEEEECCCC
Confidence            5544 444 499998753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=8.9e-11  Score=107.85  Aligned_cols=226  Identities=12%  Similarity=0.059  Sum_probs=143.1

Q ss_pred             eEEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          178 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       178 ~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ......|+|+++ ++++...++.|..|+. +++......                 +...+..++++++|+++++...++
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~-----------------~~~~~~gl~~d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLD-----------------ATAFTNGNAVDAQQRLVHCEHGRR  107 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEE-----------------SCSCEEEEEECTTSCEEEEETTTT
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeC-----------------CCCccceeeECCCCCEEEEECCCC
Confidence            456789999998 4555556789999998 444321111                 112578999999999666655567


Q ss_pred             eEEEEECCCCeeeEEEecc-----CCCeeEEEEeCCCCCEEEE----eeC-------------CCeEEEEcCccccCCCc
Q 010883          257 CIYVYDLEANKLSLRILAH-----TSDVNTVCFGDESGHLIYS----GSD-------------DNLCKVWDRRCLNVKGK  314 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~  314 (498)
                      .|.+|+.. ++.. .+..+     ...++.+++. ++++++++    |..             .+.|..||..    .++
T Consensus       108 ~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~----~g~  180 (305)
T 3dr2_A          108 AITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD----GSP  180 (305)
T ss_dssp             EEEEECTT-SCEE-EEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS----SCC
T ss_pred             EEEEECCC-CCEE-EEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC----CCc
Confidence            89999986 5432 22211     1346789996 78888876    332             2567777764    333


Q ss_pred             eeEEeccccccEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCC
Q 010883          315 PAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC  388 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (498)
                      .... . .......++|+||++.|+.+...      +.|.+|++.... .                              
T Consensus       181 ~~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l------------------------------  227 (305)
T 3dr2_A          181 LQRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L------------------------------  227 (305)
T ss_dssp             CEEE-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E------------------------------
T ss_pred             EEEE-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c------------------------------
Confidence            3222 2 44567889999999988777665      689999886421 0                              


Q ss_pred             CceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC
Q 010883          389 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD  468 (498)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D  468 (498)
                       .....+..... .    ....++++++|++ .+++.+ .|.+|+. .++.+..+..+. .+.+++|+|+++.|+.++.+
T Consensus       228 -~~~~~~~~~~~-~----~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          228 -HDRRHFASVPD-G----LPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             -EEEEEEECCSS-S----CCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred             -cCCeEEEECCC-C----CCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence             00000000000 0    0012245668884 444444 4999998 677777776554 58899999999888888776


Q ss_pred             CcE
Q 010883          469 GDV  471 (498)
Q Consensus       469 g~i  471 (498)
                      +..
T Consensus       298 ~l~  300 (305)
T 3dr2_A          298 CLW  300 (305)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            533

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.37  E-value=6.4e-11  Score=121.63  Aligned_cols=243  Identities=15%  Similarity=0.137  Sum_probs=153.1

Q ss_pred             CCceeEEEEEeCCCCCeEEEEEC-----CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883          174 SLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  248 (498)
Q Consensus       174 ~~~~~v~~~~~sp~~~~l~~~s~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~  248 (498)
                      ++...+..++|||||++||.+..     ...|++||+.+++..... ...                .....++|+ ||+.
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~----------------~k~~~~~Ws-Dg~~  187 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD----------------VKFSGISWL-GNEG  187 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE----------------EESCCCEEE-TTTE
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC----------------ceeccEEEe-CCCE
Confidence            34557889999999999996542     247999999998754321 110                012467899 9999


Q ss_pred             EEEEeCCC-------------eEEEEECCCCee----eEEEec-cCCCeeEEEEeCCCCCEEEEeeC----CCeEEEEcC
Q 010883          249 LVAGSSDD-------------CIYVYDLEANKL----SLRILA-HTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDR  306 (498)
Q Consensus       249 l~~g~~dg-------------~i~vwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~----dg~i~vwd~  306 (498)
                      |+.++.+.             .|++|++.++..    +..... |...+..+.|+ +++++|+....    +..|+++|+
T Consensus       188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~  266 (693)
T 3iuj_A          188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDL  266 (693)
T ss_dssp             EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEET
T ss_pred             EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEEC
Confidence            99988774             399999987653    222223 44557889998 77777654432    358999998


Q ss_pred             ccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CC---CcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883          307 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR  382 (498)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      ...   ......+..+....... +++++..|+..+ .+   +.|..+|+.+...                         
T Consensus       267 ~~~---~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------------------------  317 (693)
T 3iuj_A          267 SQE---NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------------------------  317 (693)
T ss_dssp             TST---TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-------------------------
T ss_pred             CCC---CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------------------------
Confidence            622   11344555565555554 566666655443 33   5788899876321                         


Q ss_pred             cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CC--eEEEEECCCCcEEEEec-cCCCCeeeeEEcCC
Q 010883          383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPS  458 (498)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~  458 (498)
                             .....+..+....  .      .++++++.|+.... ++  .|++||+..+ ....+. .+.+.+..+.++++
T Consensus       318 -------~~~~~l~~~~~~~--~------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d  381 (693)
T 3iuj_A          318 -------AHWRDLIPERQQV--L------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHD  381 (693)
T ss_dssp             -------GGCEEEECCCSSC--E------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTT
T ss_pred             -------cccEEEecCCCCE--E------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCC
Confidence                   0011222222111  1      34446777766655 44  6899998754 444443 34456888889999


Q ss_pred             CCeEEEEeCC----CcEEEecCCCCC
Q 010883          459 QPMLVSSSWD----GDVVRWEFPGNG  480 (498)
Q Consensus       459 ~~~l~s~~~D----g~i~iw~~~~~~  480 (498)
                      ++.|+....+    +.|+.||+.++.
T Consensus       382 ~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          382 DPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCEEEEEecCCCCCCEEEEEECCCCe
Confidence            8866655444    789999987653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.37  E-value=1.7e-10  Score=109.37  Aligned_cols=246  Identities=13%  Similarity=0.109  Sum_probs=155.5

Q ss_pred             EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeec-CCC---ceeEEEEEeCCCCCeEEEEEC--CCe
Q 010883          136 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI  199 (498)
Q Consensus       136 ~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~~~~sp~~~~l~~~s~--d~~  199 (498)
                      .+++||||++|+++.          .++.|.++|..+++.+..+... ...   ......+.|+|||++|+++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888775          3678999999998777665432 100   113456899999999999874  578


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE----ec
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI----LA  274 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~----~~  274 (498)
                      |.+.|+.+++.........                  .  ....|++ +.+++.+.||.+.+.++.+++.....    ..
T Consensus       202 VsVID~~t~kvv~~I~v~g------------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v  261 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPD------------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT  261 (426)
T ss_dssp             EEEEETTTTEEEEEEECCS------------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred             EEEEECCCCeEEEEEEcCC------------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence            9999999988765544321                  1  1222322 45555666777777777555443221    11


Q ss_pred             cCCCe-eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--------cccccEEEEEEcCCCCEEEEEeC--
Q 010883          275 HTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--------GHLEGITFIDSRGDGRYLISNGK--  343 (498)
Q Consensus       275 ~~~~v-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~s~~~--  343 (498)
                      ...++ ..+.|. +++..++..+..+.|.+.|.............+.        ........++++|+++.+++...  
T Consensus       262 ~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~  340 (426)
T 3c75_H          262 EDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR  340 (426)
T ss_dssp             TTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred             CCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence            11111 234566 5566666667788999999851110000000000        01112223689999887776542  


Q ss_pred             --------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883          344 --------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST  415 (498)
Q Consensus       344 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  415 (498)
                              ++.|.++|+.+.                                  +.+..+...       ...+.+.|+|
T Consensus       341 ~~gthk~~s~~VsVID~~T~----------------------------------kvv~~I~vg-------~~P~gia~sp  379 (426)
T 3c75_H          341 DEWKHKAASRFVVVLNAETG----------------------------------ERINKIELG-------HEIDSINVSQ  379 (426)
T ss_dssp             CTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEECC
T ss_pred             ccccccCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcCeEEEcc
Confidence                    357999999883                                  344443221       1245557888


Q ss_pred             CCc-EEEEEe-cCCeEEEEECCCCcEEEEe
Q 010883          416 GQK-YIYTGS-HDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       416 ~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~  443 (498)
                      ||+ ++++.. .++.|.++|+.+++.+.++
T Consensus       380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          380 DAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999 888888 4899999999999999887

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=1.6e-09  Score=100.31  Aligned_cols=197  Identities=13%  Similarity=0.099  Sum_probs=129.1

Q ss_pred             eEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883          134 AYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  212 (498)
Q Consensus       134 v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~  212 (498)
                      ....+|+|++. ++++...++.|..|+..++... .. ..   ...+.+++|+|+++++++. . ..|.+||..+++...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~---~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-AL---PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL  123 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-EC---SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-EC---CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence            46788999854 5566667889999999887432 22 11   2369999999999877754 3 459999998877543


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  286 (498)
                      .......            .....+.+++++|+|+++++...      .+.|+.++  +++.. .+..+......++|+ 
T Consensus       124 ~~~~~~~------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s-  187 (326)
T 2ghs_A          124 HAELESD------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFS-  187 (326)
T ss_dssp             EECSSTT------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEEC-
T ss_pred             EeeCCCC------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEc-
Confidence            3221100            01136889999999996665432      25677777  45543 333344567889998 


Q ss_pred             CCCCEEE-EeeCCCeEEEEcCc--cc-cCCC-ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          287 ESGHLIY-SGSDDNLCKVWDRR--CL-NVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       287 ~~~~~l~-s~s~dg~i~vwd~~--~~-~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      ++++.++ +.+.++.|.+||+.  .. .... .....+......+..+++.++|.++++...++.|.+||..
T Consensus       188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            6776554 44567899999974  11 1111 1222333334557789999999988877777889999874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.35  E-value=3.6e-09  Score=100.25  Aligned_cols=268  Identities=11%  Similarity=0.033  Sum_probs=166.6

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCC------ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN  215 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~  215 (498)
                      ++..+++++.++.|..+|..+|+.+.........      ...+... ...++..+++++.++.|..+|..+++......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            3567888888999999999999776554432110      1122211 12245677888899999999999998765443


Q ss_pred             ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEeCCCCC
Q 010883          216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGH  290 (498)
Q Consensus       216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~  290 (498)
                      .....            ...++    .  .+..+++++.++.|..+|..+++.+..........     ......   +.
T Consensus       131 ~~~~~------------~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~  189 (376)
T 3q7m_A          131 VAGEA------------LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG  189 (376)
T ss_dssp             CSSCC------------CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT
T ss_pred             CCCce------------EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC
Confidence            32110            00111    1  13478888899999999999998877665432211     222332   35


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEecccccc-------EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-------ITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      .++.++.++.+..+|..    .++.+.........       +..+...|  .+..++.++.++.+..+|..+.+     
T Consensus       190 ~v~~g~~~g~l~~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~-----  260 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ-----  260 (376)
T ss_dssp             EEEECCTTTEEEEEETT----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-----
T ss_pred             EEEEEcCCCEEEEEECC----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-----
Confidence            67888889999999987    66665544321100       00011111  24567778889999999998743     


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                   .+-....... .   .    +..  ++..|++++.++.|+.+|..+++.+.
T Consensus       261 -----------------------------~~w~~~~~~~-~---~----~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w  301 (376)
T 3q7m_A          261 -----------------------------IMWKRELGSV-N---D----FIV--DGNRIYLVDQNDRVMALTIDGGVTLW  301 (376)
T ss_dssp             -----------------------------EEEEECCCCE-E---E----EEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred             -----------------------------EEeeccCCCC-C---C----ceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence                                         2222111110 0   0    111  45678888889999999999999887


Q ss_pred             Eecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          442 ALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       442 ~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      .... ....+.....  .+..|+.++.+|.|.++|..+++.
T Consensus       302 ~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          302 TQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             EECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             eecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence            7652 2223333444  346788888999999999887653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.29  E-value=3.2e-10  Score=115.74  Aligned_cols=311  Identities=12%  Similarity=0.096  Sum_probs=179.3

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-------eE-EEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~v-~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      +..|++++.++.|..+|..+|+.+.+.........       .+ ..++.  ++..|++++.|+.|..+|..+|+.....
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            56777788889999999999987776533211100       00 01111  4567888889999999999999886655


Q ss_pred             ccc-ccccCccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEEEeccC-----------
Q 010883          215 NVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAHT-----------  276 (498)
Q Consensus       215 ~~~-~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~-----------  276 (498)
                      ... .......       ....++.     .++ .+++++      .+|.|+.||..+++.+-++....           
T Consensus       148 ~~~~~~~~~~~-------~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~  214 (689)
T 1yiq_A          148 DTRADHKRSYT-------ITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKG  214 (689)
T ss_dssp             ECCSCTTSCCB-------CCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHH
T ss_pred             cCcCCCCCCcc-------ccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccc
Confidence            432 1000000       0001111     144 445543      36899999999999887664210           


Q ss_pred             --------------------CCeeEEEEeCCCCCEEEEeeCCCe-------------------EEEEcCccccCCCceeE
Q 010883          277 --------------------SDVNTVCFGDESGHLIYSGSDDNL-------------------CKVWDRRCLNVKGKPAG  317 (498)
Q Consensus       277 --------------------~~v~~~~~~~~~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~  317 (498)
                                          .....+++. ++..+++.++.++.                   |..+|..    +++.+.
T Consensus       215 ~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----TG~~~W  289 (689)
T 1yiq_A          215 MEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----TGEYVW  289 (689)
T ss_dssp             HHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----TCCEEE
T ss_pred             ccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----CCceeE
Confidence                                011256776 66778888887764                   9999998    777776


Q ss_pred             Eecc--cc-------ccEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCCccccccCccccccccee-------ecCC
Q 010883          318 VLMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW-------MDYP  378 (498)
Q Consensus       318 ~~~~--~~-------~~v~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  378 (498)
                      .+..  |.       .++.......+|+   .++.++.+|.++++|.++++.........  ..|....       +...
T Consensus       290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~~~~~~~pi~~~  367 (689)
T 1yiq_A          290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP--QSWTKGMDMKTGRPILDE  367 (689)
T ss_dssp             EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CSSEEEEETTTTEEEECH
T ss_pred             eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc--cccccccCccCCCcccch
Confidence            6543  21       1222222223554   78899999999999999876543221111  0111000       0000


Q ss_pred             cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---------------------------------
Q 010883          379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---------------------------------  425 (498)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---------------------------------  425 (498)
                      . .. ...+..+....+.+.....    ....++|+|+..++++...                                 
T Consensus       368 ~-~~-~~~~~~~~~~~~p~~~Gg~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~  441 (689)
T 1yiq_A          368 E-NA-AYWKNGKRNLVTPAFWGAH----DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPE  441 (689)
T ss_dssp             H-HH-CTTTSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCS
T ss_pred             h-hc-cccCCCCeeEeCCCccccc----CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCc
Confidence            0 00 0000000000000000000    0001244555555554321                                 


Q ss_pred             ------------CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          426 ------------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       426 ------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                                  +|.|+.||+.+++.+..+..+ .++....+...+.+++.++.||.|+.||..+++..
T Consensus       442 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          442 GAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             SHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence                        478999999999999888754 34455567778889999999999999999988754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.28  E-value=5.6e-10  Score=113.67  Aligned_cols=310  Identities=13%  Similarity=0.133  Sum_probs=182.5

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce--------eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--------TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      +..|++++.++.|.-+|..+|+.+.+.........        ....+++  ++..|++++.|+.|..+|..+|+.....
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            45677777789999999999987776543221100        0011222  4667888889999999999999887655


Q ss_pred             ccc-ccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCC---------
Q 010883          215 NVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD---------  278 (498)
Q Consensus       215 ~~~-~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~---------  278 (498)
                      ... ........       ...++    . .++ .+++++.      ++.|+.+|..+++.+-++......         
T Consensus       155 ~~~~~~~~~~~~-------~~~p~----v-~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~  221 (677)
T 1kb0_A          155 NTFEGQKGSLTI-------TGAPR----V-FKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES  221 (677)
T ss_dssp             ETTTTCCSSCBC-------CSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred             cCCcCcCcCccc-------ccCcE----E-ECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence            433 11000000       00011    1 133 4555543      689999999999988776532211         


Q ss_pred             -----------------------eeEEEEeCCCCCEEEEeeCCC-------------------eEEEEcCccccCCCcee
Q 010883          279 -----------------------VNTVCFGDESGHLIYSGSDDN-------------------LCKVWDRRCLNVKGKPA  316 (498)
Q Consensus       279 -----------------------v~~~~~~~~~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~  316 (498)
                                             ...+++. +++.+++.++.++                   .|..+|..    +++.+
T Consensus       222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~----TG~~~  296 (677)
T 1kb0_A          222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD----TGKYK  296 (677)
T ss_dssp             HHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEE
T ss_pred             cccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC----CCCEE
Confidence                                   1346775 6677888877664                   58899987    67776


Q ss_pred             EEecc--cc-------ccEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883          317 GVLMG--HL-------EGITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL  384 (498)
Q Consensus       317 ~~~~~--~~-------~~v~~l~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (498)
                      ..+..  |.       .....+....+|   ..++.++.+|.++++|..+++..........  .|... +.  ...+.+
T Consensus       297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~~~~~-~d--~~g~~~  371 (677)
T 1kb0_A          297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV--NWASG-YD--KHGKPI  371 (677)
T ss_dssp             EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--SSEEE-EC--TTSCEE
T ss_pred             EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc--Ccccc-cC--CCCcee
Confidence            65543  21       112223333467   6789999999999999998765433221110  00000 00  000000


Q ss_pred             cC----CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-----------------------------------
Q 010883          385 KH----PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----------------------------------  425 (498)
Q Consensus       385 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----------------------------------  425 (498)
                      ..    ..+.....+.+.....    ....++|+|++.++++...                                   
T Consensus       372 ~~~~~~~~~~~~~~~P~~~G~~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  447 (677)
T 1kb0_A          372 GIAAARDGSKPQDAVPGPYGAH----NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN  447 (677)
T ss_dssp             ECGGGGCTTSCEECSSCTTCSS----CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred             eccccCcCCCccEECcCccccc----CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence            00    0000000000000000    0012345666666666543                                   


Q ss_pred             --------CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          426 --------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       426 --------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                              .|.|..||+.+++.+..+. +..++....+..++.+++.++.||.+++||..+++..
T Consensus       448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          448 AEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             SSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence                    2789999999999998886 4455666677788888999999999999999988654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=9.3e-11  Score=109.64  Aligned_cols=231  Identities=15%  Similarity=0.078  Sum_probs=146.5

Q ss_pred             eEEEEEeCCCCCeEEEEEC--CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-
Q 010883          178 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-  254 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-  254 (498)
                      .+..++++|+|+++++...  ++.++||.+.+++........          ....++-..+..++++++|+++++-.. 
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v~D~g~   87 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQS----------GNAIITFDTVLGIKSDGNGIVWMLDNGN   87 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCC----------SSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcc----------cCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence            6889999999998888642  343555655445432111100          011134457999999999986555433 


Q ss_pred             ----CCeEEEEECCCCeeeEEEecc------CCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEEecc
Q 010883          255 ----DDCIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMG  321 (498)
Q Consensus       255 ----dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~  321 (498)
                          ++.|.+||+.+++.+..+...      ...+..+++.+.++..+++..   .++.|.+||+.    .++....+.+
T Consensus        88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~----~g~~~r~~~~  163 (343)
T 2qe8_A           88 QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ----TGLAARVLQG  163 (343)
T ss_dssp             HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT----TCCEEEECTT
T ss_pred             CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC----CCCEEEEecC
Confidence                578999999999877666432      245689999744455555555   67899999986    5555555544


Q ss_pred             ccccEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883          322 HLEGIT-FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV  400 (498)
Q Consensus       322 ~~~~v~-~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (498)
                      |..... ...+.++|..+.+.+.++.++.|...                                               
T Consensus       164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~-----------------------------------------------  196 (343)
T 2qe8_A          164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG-----------------------------------------------  196 (343)
T ss_dssp             CTTTSCCSCCCEETTEECBEECTTSCEECCCCC-----------------------------------------------
T ss_pred             CCcccccccceeECCEEEEeccCCCceeceecc-----------------------------------------------
Confidence            322110 13344466666666677776555321                                               


Q ss_pred             eEEEEEEEeccccCCCCcEEEEEecCC-eEEEEECC---CCc-----EEE--EeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883          401 LRTLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLV---SGE-----QVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDG  469 (498)
Q Consensus       401 ~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~---~~~-----~~~--~~~~h~~~v~~l~~sp~~~~l~s~~~Dg  469 (498)
                             ...++++|||+.|+.+..++ .|+.++..   .+.     ...  ...++.+....++++++|.++++...++
T Consensus       197 -------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~  269 (343)
T 2qe8_A          197 -------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS  269 (343)
T ss_dssp             -------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT
T ss_pred             -------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC
Confidence                   12236778999888887766 56555532   111     000  1113344567899999999999888899


Q ss_pred             cEEEecC
Q 010883          470 DVVRWEF  476 (498)
Q Consensus       470 ~i~iw~~  476 (498)
                      .|.+|+.
T Consensus       270 ~V~~~d~  276 (343)
T 2qe8_A          270 AIGVITS  276 (343)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEC
Confidence            9999998

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.25  E-value=7.3e-12  Score=118.18  Aligned_cols=203  Identities=14%  Similarity=0.180  Sum_probs=114.2

Q ss_pred             CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883          187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN  266 (498)
Q Consensus       187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  266 (498)
                      ++..+++++.|+.|+.||..+|+....... .                 ++.+..+..++..+++++.||.|+.||..++
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-----------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG   69 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-----------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN   69 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-----------------CSCCCC-----CCEEECTTTCCEEEC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-----------------CceecceEcCCCEEEEeCCCCEEEEEECCCC
Confidence            577899999999999999999987665443 1                 2223334456777787789999999999998


Q ss_pred             eeeEEEeccCC-Cee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883          267 KLSLRILAHTS-DVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       267 ~~~~~~~~~~~-~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                      +.+..+..+.. .+. +..+  ..+..+++++.|+.|+.||..    +++.+..+..+.    ...++|++..+++++.|
T Consensus        70 ~~~w~~~~~~~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p~~~~v~~~~~d  139 (369)
T 2hz6_A           70 EGLTKLPFTIPELVQASPCR--SSDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSPSTSLLYLGRTE  139 (369)
T ss_dssp             CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEE
T ss_pred             ceeeeeeccCccccccCceE--ecCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccccCCEEEEEecC
Confidence            87665543211 111 1111  134578888999999999997    666666555443    23456688889999999


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC---cEEE
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ---KYIY  421 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~  421 (498)
                      +.|+.||.++++....                                  +..        .....+.++.+.   ..++
T Consensus       140 g~v~a~d~~tG~~~W~----------------------------------~~~--------~~~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          140 YTITMYDTKTRELRWN----------------------------------ATY--------FDYAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             EEEECCCSSSSSCCCE----------------------------------EEE--------EEECCBCCCCCTTCCCCEE
T ss_pred             CEEEEEECCCCCEEEe----------------------------------Eec--------ccccCccccCCccccceEE
Confidence            9999999987542211                                  110        001233444332   4577


Q ss_pred             EEecCCeEEEEECCCCcEEEEeccCCCCee-eeEEcCCCC
Q 010883          422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQP  460 (498)
Q Consensus       422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~  460 (498)
                      +++.||.|+.||..+|+.+..+.. ..++. ...+++++.
T Consensus       178 ~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          178 VSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred             EECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence            788999999999999999888763 34444 345566664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=2.3e-09  Score=109.19  Aligned_cols=324  Identities=13%  Similarity=0.110  Sum_probs=174.4

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeec-CCC-ceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCcee
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL-RWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTME  211 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-~~~-~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~  211 (498)
                      ++..|++++.|+.|..+|..+|+.+...... ... ...+.   -+|  .+..+++++.      ++.|+.+|..+|+..
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~---~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTIT---GAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCC---SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccc---cCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence            4567888889999999999999877765433 100 01111   112  2344555443      689999999999876


Q ss_pred             cccccccccc--Cc----------cccccCC----CCceecEEEEEEcCCCCEEEEEeCCC-------------------
Q 010883          212 SLANVTEIHD--GL----------DFSAADD----GGYSFGIFSLKFSTDGRELVAGSSDD-------------------  256 (498)
Q Consensus       212 ~~~~~~~~~~--~~----------~~~~~~~----~~h~~~i~~~~~s~~g~~l~~g~~dg-------------------  256 (498)
                      ..........  .+          .......    .+.......++++|++..++.++.++                   
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence            5554322110  00          0000000    01111223578899888888887664                   


Q ss_pred             eEEEEECCCCeeeEEEec--cC-------CCeeEEEEeCCCC---CEEEEeeCCCeEEEEcCccccCCCceeEEecccc-
Q 010883          257 CIYVYDLEANKLSLRILA--HT-------SDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-  323 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-  323 (498)
                      .|..+|..+++.+-.+..  |.       .....+... .++   ..++.++.+|.++++|..    +++.+....... 
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~----tG~~l~~~~~~~~  358 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPV  358 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCC
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECC----CCCEecccccccc
Confidence            599999999998877653  21       112222222 345   689999999999999997    666655443110 


Q ss_pred             ----------ccE------------------------EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccc-cccCcccc
Q 010883          324 ----------EGI------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS-CNLGFRSY  368 (498)
Q Consensus       324 ----------~~v------------------------~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~  368 (498)
                                .++                        ..++++|+..++++...+-...++.......-.. ........
T Consensus       359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  438 (677)
T 1kb0_A          359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT  438 (677)
T ss_dssp             SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred             CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence                      001                        1467888888888776654444443321000000 00000000


Q ss_pred             cccce--eecCCcCcccccCCCCceEEEEccCcee-EEEEEE---EeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883          369 EWDYR--WMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRC---HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA  442 (498)
Q Consensus       369 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  442 (498)
                      .....  ...+...     .+....+..++..... ......   .+...++.++.++++++.||.+++||+.+++.+..
T Consensus       439 ~~~~g~~~~~~~~~-----~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          439 GWNTAKFFNAEPPK-----SKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             TCCCCEEECSSCCC-----SCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccCC-----CCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence            00000  0000000     0001222222211100 000000   01223444678889999999999999999999999


Q ss_pred             eccCC-CCeeeeEEcCCCCeEE-EEeC----------------CCcEEEecCCC
Q 010883          443 LKYHT-SPVRDCSWHPSQPMLV-SSSW----------------DGDVVRWEFPG  478 (498)
Q Consensus       443 ~~~h~-~~v~~l~~sp~~~~l~-s~~~----------------Dg~i~iw~~~~  478 (498)
                      +.... ....-+.|..+|+.++ +.+.                .+.+..|.+..
T Consensus       514 ~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          514 APTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             eeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            87433 2334456778887444 3322                36788888874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.25  E-value=4.5e-08  Score=92.61  Aligned_cols=262  Identities=14%  Similarity=0.089  Sum_probs=163.1

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD  221 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (498)
                      ++..+++++.++.|..+|..+|+..............   ...  .+..+++++.++.|..+|..+++............
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~---p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSR---PVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSC---CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcC---CEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence            4567888889999999999999776554332211111   111  24577788889999999999998765544321110


Q ss_pred             CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC----------e-eEEEEeCCCCC
Q 010883          222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------V-NTVCFGDESGH  290 (498)
Q Consensus       222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~  290 (498)
                      .       ..+...++    ..  +..+++++.++.|..+|..+++.+.........          + .....   .+.
T Consensus       177 ~-------~~~~~~~~----~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~  240 (376)
T 3q7m_A          177 S-------LRGESAPT----TA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNG  240 (376)
T ss_dssp             ---------CCCCCCE----EE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETT
T ss_pred             e-------ecCCCCcE----EE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECC
Confidence            0       00001111    11  346888888999999999999887665422110          1 11112   245


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      .++.++.++.+..+|..    .++.+....  ......+..  ++..++.++.++.|..+|..+...             
T Consensus       241 ~v~~~~~~g~l~~~d~~----tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~-------------  299 (376)
T 3q7m_A          241 VVFALAYNGNLTALDLR----SGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT-------------  299 (376)
T ss_dssp             EEEEECTTSCEEEEETT----TCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE-------------
T ss_pred             EEEEEecCcEEEEEECC----CCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE-------------
Confidence            77788889999999987    666655443  233444444  356788888899999999987432             


Q ss_pred             cceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCC
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP  449 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~  449 (498)
                                           +-.... .....      ..+..  .+..|++++.+|.|+++|..+++.+.........
T Consensus       300 ---------------------~w~~~~~~~~~~------~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~  350 (376)
T 3q7m_A          300 ---------------------LWTQSDLLHRLL------TSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG  350 (376)
T ss_dssp             ---------------------EEEECTTTTSCC------CCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTC
T ss_pred             ---------------------EEeecccCCCcc------cCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc
Confidence                                 111110 00000      00111  2467888999999999999999998887754444


Q ss_pred             eeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          450 VRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       450 v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      +...... .+..|+.++.||.|+.|+
T Consensus       351 ~~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          351 FQTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             BCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             ceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            4332222 245788888999999886

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=1.6e-09  Score=110.52  Aligned_cols=310  Identities=10%  Similarity=0.022  Sum_probs=165.2

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC---CCCeEEEEE-----CCCeEEEEECCCCceecc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYAS-----MSPIVHIVDVGSGTMESL  213 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~s-----~d~~i~iwd~~~~~~~~~  213 (498)
                      ++..|++++.|+.|..+|..+|+.+.......... ....+..+|   ++..++..+     .++.|..||..+|+....
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK-RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTT-SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCC-CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            35678888899999999999998776654320110 011112223   444433322     368999999999987655


Q ss_pred             ccccccccCccc-------cccCCC--------CceecEEEEEEcCCCCEEEEEeCCCe-------------------EE
Q 010883          214 ANVTEIHDGLDF-------SAADDG--------GYSFGIFSLKFSTDGRELVAGSSDDC-------------------IY  259 (498)
Q Consensus       214 ~~~~~~~~~~~~-------~~~~~~--------~h~~~i~~~~~s~~g~~l~~g~~dg~-------------------i~  259 (498)
                      ...........+       ......        ++......++++|++..+++++.++.                   |.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            432110000000       000000        11111235788898888999887764                   99


Q ss_pred             EEECCCCeeeEEEec--cC-------CCeeEEEEeCCCCC---EEEEeeCCCeEEEEcCccccCCCceeEEecccc----
Q 010883          260 VYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----  323 (498)
Q Consensus       260 vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----  323 (498)
                      .+|..+++.+-.+..  |.       ..+...... .++.   .++.++.+|.++++|..    +++.+.......    
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRA----TGELLSAKGIVPQSWT  353 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSSE
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECC----CCCEeccccccccccc
Confidence            999999998877653  22       111111221 2343   78899999999999997    565553221000    


Q ss_pred             ------------------------cc-----------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883          324 ------------------------EG-----------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY  368 (498)
Q Consensus       324 ------------------------~~-----------v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  368 (498)
                                              ..           -..++++|+..++++...+....++....... ..........
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~-~~~~~~~~~~  432 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPK-RNPFKSMYQL  432 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCC-CCSCTTSCCC
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccc-cccccccccc
Confidence                                    00           01267888888888877665555554432100 0000000000


Q ss_pred             cccceeecCC---------c-Cccc--ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          369 EWDYRWMDYP---------P-QARD--LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       369 ~~~~~~~~~~---------~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                      ......+...         + .+..  +-...++.+-.+..+...       ....++..+.++++|+.||.|+.||..+
T Consensus       433 g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-------~~g~~~tagglvf~gt~dg~l~a~D~~t  505 (689)
T 1yiq_A          433 GLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-------NGGTLSTAGNLVFEGSADGRVIAYAADT  505 (689)
T ss_dssp             SSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-------CCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             CccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-------cCccceECCCEEEEECCCCcEEEEECCC
Confidence            0000000000         0 0000  000112222222211100       1112334678899999999999999999


Q ss_pred             CcEEEEeccCCCC-eeeeEEcCCCC-eEEEE
Q 010883          437 GEQVAALKYHTSP-VRDCSWHPSQP-MLVSS  465 (498)
Q Consensus       437 ~~~~~~~~~h~~~-v~~l~~sp~~~-~l~s~  465 (498)
                      |+.+..++...+. ..-+.|..+|+ ++++.
T Consensus       506 G~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          506 GEKLWEQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence            9999988744332 24567788888 44443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.22  E-value=1.4e-08  Score=95.03  Aligned_cols=236  Identities=12%  Similarity=0.062  Sum_probs=145.2

Q ss_pred             eC--CCCCeEEEEE-CCCeEEEEECCCC----ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-
Q 010883          184 LS--PDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-  255 (498)
Q Consensus       184 ~s--p~~~~l~~~s-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-  255 (498)
                      ++  +++++|++.+ .++.|.++|+.+.    +........+.....        + ......+..+|+| .++++..+ 
T Consensus        89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~--------g-~s~Ph~~~~~pdG-i~Vs~~g~~  158 (462)
T 2ece_A           89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS--------G-YSRLHTVHCGPDA-IYISALGNE  158 (462)
T ss_dssp             CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH--------C-EEEEEEEEECSSC-EEEEEEEET
T ss_pred             cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc--------C-CCcccceeECCCe-EEEEcCCCc
Confidence            36  7888877655 4788999999754    222222111110000        0 0135567888999 66665554 


Q ss_pred             -----CeEEEEECCCCeeeEEEeccCC---CeeEEEEeCCCCCEEEEee-------------------CCCeEEEEcCcc
Q 010883          256 -----DCIYVYDLEANKLSLRILAHTS---DVNTVCFGDESGHLIYSGS-------------------DDNLCKVWDRRC  308 (498)
Q Consensus       256 -----g~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~s-------------------~dg~i~vwd~~~  308 (498)
                           |.|.++|..+.+.+.++.....   .-..+-|+ ++++.+++..                   .+..|.+||+. 
T Consensus       159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-  236 (462)
T 2ece_A          159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-  236 (462)
T ss_dssp             TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-
T ss_pred             CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-
Confidence                 7899999999999888863222   23357777 7777888874                   36899999997 


Q ss_pred             ccCCCceeEEeccc--cccEEEEEE--cCCCCEEEEEe------CCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883          309 LNVKGKPAGVLMGH--LEGITFIDS--RGDGRYLISNG------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP  378 (498)
Q Consensus       309 ~~~~~~~~~~~~~~--~~~v~~l~~--~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (498)
                         ..+.+.++...  ......+.|  +|+++++++++      .+++|.+|.......                     
T Consensus       237 ---~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~---------------------  292 (462)
T 2ece_A          237 ---KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW---------------------  292 (462)
T ss_dssp             ---TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE---------------------
T ss_pred             ---CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce---------------------
Confidence               55666655432  123445555  99999888776      456788777643110                     


Q ss_pred             cCcccccCCCCceEEEE--ccCcee----------EEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCC---CcEEEE
Q 010883          379 PQARDLKHPCDQSVATY--KGHSVL----------RTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS---GEQVAA  442 (498)
Q Consensus       379 ~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~---~~~~~~  442 (498)
                                 .....+  ......          ...........+|+||++|+++.. .+.|.+||+..   .+.+..
T Consensus       293 -----------~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~  361 (462)
T 2ece_A          293 -----------NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGK  361 (462)
T ss_dssp             -----------EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             -----------eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence                       000000  000000          000011223357889999999877 68999999853   355555


Q ss_pred             eccCC--------------CCeeeeEEcCCCCeEEEEe
Q 010883          443 LKYHT--------------SPVRDCSWHPSQPMLVSSS  466 (498)
Q Consensus       443 ~~~h~--------------~~v~~l~~sp~~~~l~s~~  466 (498)
                      +....              +.-..++++|||++|+++.
T Consensus       362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            54210              1358899999999988887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.19  E-value=4.1e-09  Score=98.59  Aligned_cols=200  Identities=15%  Similarity=0.027  Sum_probs=130.3

Q ss_pred             EEc--CCCCEEEEEE-CCCeEEEEECCCC---eEEEEEee----c-CCCceeEEEEEeCCCCCeEEEEECC------CeE
Q 010883          138 QFS--ADGSLFVAGF-QASQIRIYDVERG---WKIQKDIL----A-KSLRWTVTDTSLSPDQRHLVYASMS------PIV  200 (498)
Q Consensus       138 ~~s--~dg~~la~~~-~dg~i~vw~~~~~---~~~~~~~~----~-~~~~~~v~~~~~sp~~~~l~~~s~d------~~i  200 (498)
                      .++  +++++|+..+ .++.|.|+|+.+.   -.+.+.+.    . .........+..+|+| +++++..+      +.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            447  8888877655 5788999999754   12333331    0 1111245677889999 66665554      789


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-------------------CCCeEEEE
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------SDDCIYVY  261 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-------------------~dg~i~vw  261 (498)
                      .++|..+.+.+...........             --..+.|+|+++.+++..                   ....|.+|
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~-------------~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~  233 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQY-------------LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW  233 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCC-------------CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred             EEEECCCCeEEEEEccCCCCcc-------------ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence            9999999888776654322111             233578899999888874                   36889999


Q ss_pred             ECCCCeeeEEEecc--CCCeeEEEE--eCCCCCEEEEee------CCCeEEEEcCccccCCCceeEE--ecc--------
Q 010883          262 DLEANKLSLRILAH--TSDVNTVCF--GDESGHLIYSGS------DDNLCKVWDRRCLNVKGKPAGV--LMG--------  321 (498)
Q Consensus       262 d~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~--~~~--------  321 (498)
                      |+.+++.+.++...  ......+.|  + ++++++++++      .+++|.+|.....  .......  +..        
T Consensus       234 D~~~~k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp  310 (462)
T 2ece_A          234 DLRKRKRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLP  310 (462)
T ss_dssp             ETTTTEEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCC
T ss_pred             ECCCCcEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCcccccccc
Confidence            99998887777642  123455655  6 6777777666      5668877665411  1111111  010        


Q ss_pred             --------ccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010883          322 --------HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK  354 (498)
Q Consensus       322 --------~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~  354 (498)
                              -......|.+++||++|.++.. .+.|.+||+..
T Consensus       311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                    0134678999999999887765 67899999864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.15  E-value=1.8e-11  Score=115.49  Aligned_cols=183  Identities=12%  Similarity=0.038  Sum_probs=108.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883          245 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE  324 (498)
Q Consensus       245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  324 (498)
                      ++..+++++.||.|+.||..+++.+.++..  +.+.+..+. .++.++++++.||.|+.||..    .++.+..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~----tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSK----NNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC---------CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECC----CCceeeeeeccCc
Confidence            567899999999999999999999887765  455554444 456678888899999999987    5555544443321


Q ss_pred             c-EE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883          325 G-IT-FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR  402 (498)
Q Consensus       325 ~-v~-~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (498)
                      . +. ...+. ++..+++++.|+.|+.||..+++...                                  .+..+..  
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w----------------------------------~~~~~~~--  123 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ----------------------------------TLSSAFA--  123 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE----------------------------------EecCCCc--
Confidence            1 10 00111 34567888889999999998854321                                  1211110  


Q ss_pred             EEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCC---CeEEEEeCCCcEEEecCCCC
Q 010883          403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ---PMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~---~~l~s~~~Dg~i~iw~~~~~  479 (498)
                              ..++|++..|++++.|+.|+.||..+|+.+..+..+.  ....+++++.   ..+++++.||.|+.||..++
T Consensus       124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG  193 (369)
T ss_dssp             -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred             --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence                    1223467889999999999999999998776654221  2333444432   46777889999999999877


Q ss_pred             CC
Q 010883          480 GE  481 (498)
Q Consensus       480 ~~  481 (498)
                      +.
T Consensus       194 ~~  195 (369)
T 2hz6_A          194 DV  195 (369)
T ss_dssp             CE
T ss_pred             cE
Confidence            54

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.13  E-value=1.1e-09  Score=101.97  Aligned_cols=249  Identities=10%  Similarity=0.042  Sum_probs=149.3

Q ss_pred             EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeecCCC----ceeEEEEEeCCCCCeEEEEEC--CCe
Q 010883          136 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPI  199 (498)
Q Consensus       136 ~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~s~--d~~  199 (498)
                      .++|+|||++++++.          .++.|.+||+.+++.+..+......    ......++++|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            699999999888886          3678999999999877766443110    013456899999999999875  457


Q ss_pred             EEE--EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CeeeEE
Q 010883          200 VHI--VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-----NKLSLR  271 (498)
Q Consensus       200 i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~-----~~~~~~  271 (498)
                      |.+  +|..+  . .......                  .  ..+.|++ +.+++.+.||.+.+.|+.+     ++....
T Consensus       149 v~V~~iD~~t--v-~~i~v~~------------------~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~  205 (368)
T 1mda_H          149 AGLSVPGASD--D-QLTKSAS------------------C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             EEEEETTTEE--E-EEEECSS------------------C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             EEEEEEchhh--c-eEEECCC------------------c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence            888  88876  1 1111110                  0  1122333 2344555677777778776     333211


Q ss_pred             ----EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc----------ccccEEEEEEcCCCCE
Q 010883          272 ----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRY  337 (498)
Q Consensus       272 ----~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~  337 (498)
                          +.....+.   . .+. +..++..+. +.|.+.|+...  ..+.+..+..          .......++++|+++.
T Consensus       206 ~t~~i~vg~~P~---~-~~~-~~~~~~vs~-~~V~viD~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~  277 (368)
T 1mda_H          206 CTGAQNCSSQAA---Q-ANY-PGMLVWAVA-SSILQGDIPAA--GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             SCTTSCBCSCCE---E-ETT-TTEEEECBS-SCCEEEECCSS--CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             eeeeeeCCCCcc---c-ccc-CCEEEEEcC-CEEEEEECCCC--cceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence                11112232   3 434 444555555 89999998521  1111111110          0111122689999988


Q ss_pred             EEEEeC---------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883          338 LISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH  408 (498)
Q Consensus       338 l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (498)
                      ++++..         ++.+.++|+.+.+                                  .+..+...       ...
T Consensus       278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~----------------------------------vv~~i~vg-------~~p  316 (368)
T 1mda_H          278 IMILTVEHSRSCLAAAENTSSVTASVGQ----------------------------------TSGPISNG-------HDS  316 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSCC----------------------------------EEECCEEE-------EEE
T ss_pred             EEEEeccccCcccccCCCEEEEECCCCe----------------------------------EEEEEECC-------CCc
Confidence            876533         2356699998843                                  23322211       123


Q ss_pred             eccccCCCCcE-EEEEe-cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883          409 FSPVYSTGQKY-IYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP  457 (498)
Q Consensus       409 ~~~~~s~~~~~-l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp  457 (498)
                      +.+.++|||++ +++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus       317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence            44577889985 45555 489999999999999999985543 45666654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.12  E-value=1.2e-08  Score=99.07  Aligned_cols=284  Identities=15%  Similarity=0.126  Sum_probs=175.1

Q ss_pred             EEEEECCCeEEEEECCCCeEEEEEeecC--------------------------------C---C-ceeEEEEEeCC---
Q 010883          146 FVAGFQASQIRIYDVERGWKIQKDILAK--------------------------------S---L-RWTVTDTSLSP---  186 (498)
Q Consensus       146 la~~~~dg~i~vw~~~~~~~~~~~~~~~--------------------------------~---~-~~~v~~~~~sp---  186 (498)
                      |.+|+..|.|+|+-+.++..+..+....                                +   . .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            5678889999999888876665432221                                0   0 01112233443   


Q ss_pred             --CCCeEEEEEC-CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE-c-CCCCEEEEEe--------
Q 010883          187 --DQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-S-TDGRELVAGS--------  253 (498)
Q Consensus       187 --~~~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s-~~g~~l~~g~--------  253 (498)
                        ||+++.+... ++.|.+.|+.+.++.....++...               .+..+++ + |+++++++++        
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~---------------~phg~~~~~~p~~~~v~~~~~~~~p~~~  162 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK---------------GIHGLRPQKWPRSNYVFCNGEDETPLVN  162 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC---------------SEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC---------------CCcceeeeecCCCcEEEEecccccccCC
Confidence              7888887665 557999999998877655443211               4677887 4 8999998885        


Q ss_pred             ----------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC------------------------
Q 010883          254 ----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN------------------------  299 (498)
Q Consensus       254 ----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg------------------------  299 (498)
                                .++.+.+.|..+.+...++.--. ....++++ +++.++++.+.+.                        
T Consensus       163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~  240 (595)
T 1fwx_A          163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  240 (595)
T ss_dssp             SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             CCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence                      24579999999999888876433 44667787 6788888877543                        


Q ss_pred             --------------eEEEEcCccccCCCce-eEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCcccccc
Q 010883          300 --------------LCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       300 --------------~i~vwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~  363 (498)
                                    .|.+.|.+..  .+.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+......-..
T Consensus       241 ~~~~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l  317 (595)
T 1fwx_A          241 IEKAIAAGDYQELNGVKVVDGRKE--ASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA  317 (595)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGG--GCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred             eeEeccCCCeeEECcEEEEeCccc--CCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence                          2445555411  0222 222221 23446789999999877655 578899999986321000000


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE-EecCCeEEEEECCC------
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVS------  436 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~------  436 (498)
                                            .+....+.......       ..+..+|+|+| ++++ ...|++|.+||+..      
T Consensus       318 ----------------------~~~~~v~~~v~vG~-------gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~  367 (595)
T 1fwx_A          318 ----------------------DPRSAVVAEPELGL-------GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYA  367 (595)
T ss_dssp             ----------------------CGGGGEEECCBCCS-------CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred             ----------------------CcccceEEEcCCCC-------CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhc
Confidence                                  00001111111111       11334678899 5554 45599999999987      


Q ss_pred             ----CcEEEEeccCCCCe-----eeeEEcCCCCeEEEEeC---CCcE----------EEecCCCC
Q 010883          437 ----GEQVAALKYHTSPV-----RDCSWHPSQPMLVSSSW---DGDV----------VRWEFPGN  479 (498)
Q Consensus       437 ----~~~~~~~~~h~~~v-----~~l~~sp~~~~l~s~~~---Dg~i----------~iw~~~~~  479 (498)
                          .+.+.++..|-.+-     ..+.++|||++|+++..   |..+          .++|+.++
T Consensus       368 g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          368 GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence                56777777664432     34567899999998853   4431          77888543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.09  E-value=4.3e-09  Score=97.62  Aligned_cols=267  Identities=15%  Similarity=0.161  Sum_probs=163.5

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      ...+.++...++|.+++ ++.+  |..+|. +++.+....   ..........+.  +..|.+++.++.|..+|.. ++.
T Consensus        59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~---~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~  128 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFD---TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE  128 (330)
T ss_dssp             GEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSC---C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred             CCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEE---CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence            34567778887876444 4444  888886 442221111   011111122222  5567778888999999988 654


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                      ........                ..+.++...+++. ++.++.++.|..+|.. ++....+......+.++... .++.
T Consensus       129 ~~~~~~~~----------------~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d-~~g~  189 (330)
T 3hxj_A          129 KWRFKTKK----------------AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG-KDGT  189 (330)
T ss_dssp             EEEEECSS----------------CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTCC
T ss_pred             EEEEcCCC----------------ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc-CCCE
Confidence            33322111                1244456666776 6777888999999998 77766666555667777774 5666


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW  370 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  370 (498)
                      +++ ++  +.|..+| .    .+............+.++...+++. |..++.++.|..+|...                
T Consensus       190 l~v-~t--~~l~~~d-~----~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g----------------  244 (330)
T 3hxj_A          190 IYF-GS--DKVYAIN-P----DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG----------------  244 (330)
T ss_dssp             EEE-ES--SSEEEEC-T----TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS----------------
T ss_pred             EEE-Ee--CEEEEEC-C----CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC----------------
Confidence            554 44  8889999 4    5556655555556677888888876 55566677888887432                


Q ss_pred             cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCe
Q 010883          371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV  450 (498)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v  450 (498)
                                         ..+..+.......      ..+.+.+++ .|.+++.+|.|+.+|. +++.+..+......+
T Consensus       245 -------------------~~~~~~~~~~~~~------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~  297 (330)
T 3hxj_A          245 -------------------TEKWRFKTGKRIE------SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWII  297 (330)
T ss_dssp             -------------------CEEEEEECSSCCC------SCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCC
T ss_pred             -------------------CEeEEeeCCCCcc------ccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccc
Confidence                               2222222111100      112223344 5777888889999996 788777776556677


Q ss_pred             eeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          451 RDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       451 ~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .++...+++. |..++.+|.+++......
T Consensus       298 ~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          298 ATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             SCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             cceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            8888878876 556888999999876544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.04  E-value=1.3e-08  Score=94.39  Aligned_cols=261  Identities=15%  Similarity=0.105  Sum_probs=157.8

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  213 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~  213 (498)
                      ..++.+..+|. |.+++.++.|..|| .+++.....   ......+.++...+++.+++ ++.+  |..+|. +++....
T Consensus        22 ~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~---~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~   92 (330)
T 3hxj_A           22 DSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF---KSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWR   92 (330)
T ss_dssp             CCCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS---CGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGG
T ss_pred             ccCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE---ecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEE
Confidence            34455666765 55566788899999 777554332   22233567777777776444 4433  888885 5544332


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY  293 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  293 (498)
                      ......                ......+.  +..|.+++.++.|..+|.. ++.......+...+.++... +++. ++
T Consensus        93 ~~~~~~----------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~-l~  151 (330)
T 3hxj_A           93 FDTKKA----------------IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS-EDGT-IY  151 (330)
T ss_dssp             SCC---------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTSC-EE
T ss_pred             EECCCC----------------cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc-CCCE-EE
Confidence            221110                11112222  4468888889999999998 77666665555556666664 4555 56


Q ss_pred             EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccce
Q 010883          294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR  373 (498)
Q Consensus       294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  373 (498)
                      .++.++.|..+|..     +.....+......+.++...+++.+++..   +.|..+| .+.                  
T Consensus       152 vgt~~~~l~~~d~~-----g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g------------------  204 (330)
T 3hxj_A          152 VGSNDNYLYAINPD-----GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDG------------------  204 (330)
T ss_dssp             EECTTSEEEEECTT-----SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTS------------------
T ss_pred             EEcCCCEEEEECCC-----CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCC------------------
Confidence            67788999999974     34444444444556677777787755544   7799998 442                  


Q ss_pred             eecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeee
Q 010883          374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC  453 (498)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l  453 (498)
                                      ..+..+....      ....++..+++| .|.+++.++.|..+|. +++.+..+......+..+
T Consensus       205 ----------------~~~~~~~~~~------~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~  260 (330)
T 3hxj_A          205 ----------------TEKWNFYAGY------WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSP  260 (330)
T ss_dssp             ----------------CEEEEECCSS------CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCC
T ss_pred             ----------------cEEEEEccCC------cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccc
Confidence                            1222221111      011233444455 4666777888999984 677776666555555666


Q ss_pred             EEcCCCCeEEEEeCCCcEEEecC
Q 010883          454 SWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       454 ~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      .+.+++ .|..++.+|.|..+|.
T Consensus       261 ~~~~~g-~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          261 VIGNTD-TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             EECTTS-CEEEECTTCEEEEECT
T ss_pred             eEcCCC-eEEEecCCCCEEEECC
Confidence            776666 4666777888888885

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.00  E-value=7.9e-08  Score=93.29  Aligned_cols=251  Identities=11%  Similarity=0.052  Sum_probs=157.3

Q ss_pred             CCCCEEEEEEC-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEe-C-CCCCeEEEEE------------------CCCe
Q 010883          141 ADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-S-PDQRHLVYAS------------------MSPI  199 (498)
Q Consensus       141 ~dg~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~-s-p~~~~l~~~s------------------~d~~  199 (498)
                      +||++|..... ++.|.+.|+.+.+....+....+.  .+..+++ + |+++++++++                  .++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            38888887765 557999999998665544322222  4778887 5 9999998885                  2457


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----------------------
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----------------------  256 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-----------------------  256 (498)
                      +.++|.++.+......+..                 ....++++|+|+++++.+.+.                       
T Consensus       177 vtvID~~t~~v~~qI~Vgg-----------------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~  239 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-----------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  239 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-----------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             EEEEECCCCeEEEEEEeCC-----------------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence            9999999877655544322                 123467788888887777443                       


Q ss_pred             ---------------eEEEEECCC--Cee-eEEEeccCCCeeEEEEeCCCCCEEEE-eeCCCeEEEEcCcccc-------
Q 010883          257 ---------------CIYVYDLEA--NKL-SLRILAHTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLN-------  310 (498)
Q Consensus       257 ---------------~i~vwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s-~s~dg~i~vwd~~~~~-------  310 (498)
                                     .|.|.|..+  ++. +..+.. .....++.++ |+++++++ +..+.+|.++|+....       
T Consensus       240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l  317 (595)
T 1fwx_A          240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA  317 (595)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred             ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence                           377777776  444 344432 3456788998 66775554 4568899999997321       


Q ss_pred             -CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883          311 -VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD  389 (498)
Q Consensus       311 -~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (498)
                       .......... -......++|+|+|...++.-.|++|.+||+........-                        ....
T Consensus       318 ~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g------------------------~~~~  372 (595)
T 1fwx_A          318 DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAG------------------------EKVD  372 (595)
T ss_dssp             CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHT------------------------CSCC
T ss_pred             CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcc------------------------cccc
Confidence             0011222222 2346788999999955556778999999998751100000                        0001


Q ss_pred             ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCe----------EEEEECCCCc
Q 010883          390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSC----------VYVYDLVSGE  438 (498)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~----------i~iwd~~~~~  438 (498)
                      +.+..+..|..... .........+|||++|++...   |+.          -.++|+..++
T Consensus       373 ~vi~kidV~yqpGh-~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          373 PIKDKLDVHYQPGH-LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CEEEEEECSSCEEE-EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eeEEEeeccccccc-ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            44555554432111 222344578899999999865   332          2889996554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.99  E-value=2.7e-06  Score=76.07  Aligned_cols=251  Identities=11%  Similarity=0.055  Sum_probs=147.0

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEE----EEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceecccccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVT  217 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~  217 (498)
                      |.+|+.+.. +.|+.++++.....    .....  .....+..++|+|++..|..+. .++.|..++..++........ 
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-   76 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-   76 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeec--CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-
Confidence            345565553 47888888764210    01111  1122578999999776666555 467999999876543221110 


Q ss_pred             ccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee
Q 010883          218 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS  296 (498)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s  296 (498)
                                     .-.....+++++++..|+.+ ...+.|.++++..................+++.|.++.++++..
T Consensus        77 ---------------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~  141 (267)
T 1npe_A           77 ---------------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW  141 (267)
T ss_dssp             ---------------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred             ---------------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence                           00157889999976655555 45678999998754332222222246789999733444444443


Q ss_pred             C--CCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883          297 D--DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDY  372 (498)
Q Consensus       297 ~--dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  372 (498)
                      .  .+.|..+++.     +.....+ .........+++++++..|+.+ ...+.|.++|+....                
T Consensus       142 ~~~~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~----------------  200 (267)
T 1npe_A          142 NRDNPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG----------------  200 (267)
T ss_dssp             CSSSCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE----------------
T ss_pred             CCCCcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc----------------
Confidence            3  4688888874     2222222 1233467899999987666544 456789999986411                


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEEeccCC-CCe
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHT-SPV  450 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~-~~v  450 (498)
                                        ..........   ...+    +.  ++..|+.+. ..+.|.++|..+++.+..+.... ...
T Consensus       201 ------------------~~~~~~~~~~---P~gi----~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p  253 (267)
T 1npe_A          201 ------------------RRKVLEGLQY---PFAV----TS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL  253 (267)
T ss_dssp             ------------------EEEEEECCCS---EEEE----EE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCC
T ss_pred             ------------------eEEEecCCCC---ceEE----EE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcccccccc
Confidence                              1111111110   0111    11  344455554 56899999999999988886433 246


Q ss_pred             eeeEEcCCCC
Q 010883          451 RDCSWHPSQP  460 (498)
Q Consensus       451 ~~l~~sp~~~  460 (498)
                      ..+++.|++.
T Consensus       254 ~gi~~~~~~~  263 (267)
T 1npe_A          254 YGITIALSQC  263 (267)
T ss_dssp             CCEEEECSCC
T ss_pred             ceeeecCccC
Confidence            7888888764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.98  E-value=9e-08  Score=97.36  Aligned_cols=308  Identities=12%  Similarity=0.144  Sum_probs=174.1

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-------eE-EEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~v-~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      +..|++++.++.|.-+|..+|+.+.+.........       .+ ..+++  .+..+++++.|+.|..+|..+|+.....
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            45677777889999999999987776533211100       00 01111  3567788888999999999999887655


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccC---C--------
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHT---S--------  277 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~---~--------  277 (498)
                      ...........       ...++.    . ++ .++++..      +|.|+.+|..+++.+-++....   .        
T Consensus       144 ~~~~~~~~~~~-------~~~P~v----~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~  210 (668)
T 1kv9_A          144 QTTDPAKPYSI-------TGAPRV----V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL  210 (668)
T ss_dssp             ECSCTTSSCBC-------CSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred             ccCCCCCccee-------cCCCEE----E-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence            43211100000       001111    1 34 4555543      5899999999999887764211   0        


Q ss_pred             --------------------CeeEEEEeCCCCCEEEEeeCCCe-------------------EEEEcCccccCCCceeEE
Q 010883          278 --------------------DVNTVCFGDESGHLIYSGSDDNL-------------------CKVWDRRCLNVKGKPAGV  318 (498)
Q Consensus       278 --------------------~v~~~~~~~~~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~~  318 (498)
                                          ....+++. +...+++.++.++.                   |..+|..    +++.+..
T Consensus       211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----tG~~~W~  285 (668)
T 1kv9_A          211 REAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----TGKLAWH  285 (668)
T ss_dssp             HHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEEE
T ss_pred             ccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----CCceeeE
Confidence                                11235775 56678888877763                   8899987    7777666


Q ss_pred             ecc--cc-------ccEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCCccccccCcccccccce-------eecCCc
Q 010883          319 LMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR-------WMDYPP  379 (498)
Q Consensus       319 ~~~--~~-------~~v~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  379 (498)
                      +..  |.       .+.....+..+|+   .++.++.+|.++++|..+++.........  ..|...       .+....
T Consensus       286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~d~~~g~p~~~~~  363 (668)
T 1kv9_A          286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK--VTWAEKVDLATGRPVEAPG  363 (668)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CCSEEEECTTTCCEEECTT
T ss_pred             eecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc--cccccccccccCCcccccc
Confidence            543  21       2233333333665   68899999999999998876543221111  001100       000000


Q ss_pred             CcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE------------------------------------E
Q 010883          380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT------------------------------------G  423 (498)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------------------------g  423 (498)
                      ..    . ..+....+.+.....    ....++++|+..++++                                    .
T Consensus       364 ~~----~-~~~~~~~~p~~~G~~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~  434 (668)
T 1kv9_A          364 VR----Y-EKEPIVMWPSPFGAH----NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (668)
T ss_dssp             TT----C-SSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             cc----c-cCCeeEECCCCcccc----CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence            00    0 000000000000000    0000122333333222                                    1


Q ss_pred             ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ..+|.|+.||+.+++.+.....+ .++....+...+.+++.++.||.|+.||..+++..
T Consensus       435 ~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          435 VVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            23488999999999998887643 34444556667888999999999999999877653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.97  E-value=3.2e-07  Score=80.72  Aligned_cols=195  Identities=13%  Similarity=0.085  Sum_probs=133.7

Q ss_pred             ceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCc
Q 010883          133 RAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT  209 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~  209 (498)
                      ....++|++|+.++++.+.  ++.|+++|+.+++.+....... +. ....+++.  ++.|..+. .++.+.++|..+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-SY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-TC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-Cc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence            3578999999765555543  5799999999998776654322 21 12234443  44555544 57899999999887


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEE
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCF  284 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~  284 (498)
                      ....+... ...              +   ..+++||+.++++..++.|.++|..+.+.+..+.-..     ..++.+.|
T Consensus        98 v~~~i~~g-~~~--------------g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           98 NIKNFTHQ-MKD--------------G---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             EEEEEECC-SSS--------------C---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEEEECC-CCC--------------e---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            76554332 011              1   2345578777777778999999999998887776321     24678888


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-------------cccEEEEEEcCCCCEE-EEEeCCCcEEEE
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYL-ISNGKDQAIKLW  350 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l-~s~~~dg~i~iw  350 (498)
                      .  ++.+++....++.|.+.|..    +++.+..+.-.             ....+.|+++|+++.| +++...+.+.+.
T Consensus       160 ~--dg~lyvn~~~~~~V~vID~~----tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          160 I--NGEVWANIWQTDCIARISAK----DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             E--TTEEEEEETTSSEEEEEETT----TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             E--CCEEEEecCCCCeEEEEECC----CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            6  45555555568899999998    77776666431             1356899999998654 556677889888


Q ss_pred             eCCCC
Q 010883          351 DIRKM  355 (498)
Q Consensus       351 d~~~~  355 (498)
                      ++...
T Consensus       234 ~l~~~  238 (266)
T 2iwa_A          234 KLHLV  238 (266)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            88764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.96  E-value=3e-08  Score=101.05  Aligned_cols=119  Identities=13%  Similarity=0.126  Sum_probs=77.6

Q ss_pred             EEEEcC-CCCEEEEEECCC-----------eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEE
Q 010883          136 VSQFSA-DGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI  202 (498)
Q Consensus       136 ~~~~s~-dg~~la~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~i  202 (498)
                      .+++.+ +|++++.|+.+.           .+.+||..++.-.........+.....++++.++++++++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 899999987643           5889999876321111111122222334677899999999884 458999


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CC-----CeEEEEECCCCeee
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-----DCIYVYDLEANKLS  269 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~d-----g~i~vwd~~~~~~~  269 (498)
                      ||..+++......+....               .-.+++..++|+.++.|+ .+     ..+.+||..+++..
T Consensus       270 yd~~t~~W~~~~~~~~~R---------------~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVAR---------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEGGGTEEEECCCCSSCC---------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ecCcCCceeECCCCCccc---------------cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            999887765443322111               123455667999999988 34     46999999887653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.92  E-value=5.9e-07  Score=89.43  Aligned_cols=198  Identities=12%  Similarity=0.108  Sum_probs=119.5

Q ss_pred             CCEEEEEEC-CCeEEEEEC-CCCeEEEEEeecCCCc--------eeEEEEEeCCCCCe----EEEEECCCeEEEEECCCC
Q 010883          143 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLR--------WTVTDTSLSPDQRH----LVYASMSPIVHIVDVGSG  208 (498)
Q Consensus       143 g~~la~~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~----l~~~s~d~~i~iwd~~~~  208 (498)
                      +..|++++. ++.|.-+|. .+|+.+-+........        .....++++|.+..    |++++.|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456666766 888999999 8897776654322110        00122445444444    888888999999999999


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEEEeccCCC----
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAHTSD----  278 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~----  278 (498)
                      +...............       -...++.    . ++ .+++++      .+|.|+.+|..+++.+-++......    
T Consensus       142 ~~~W~~~~~~~~~~~~-------~~ssP~v----~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~  208 (599)
T 1w6s_A          142 ETVWKVENSDIKVGST-------LTIAPYV----V-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL  208 (599)
T ss_dssp             CEEEEEECCCGGGTCB-------CCSCCEE----E-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred             CEEEeecCCCCCccce-------eecCCEE----E-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence            8865544322110000       0001111    1 44 455554      3789999999999988766532211    


Q ss_pred             ---------------------------------e-eEEEEeCCCCCEEEEeeCC----------------CeEEEEcCcc
Q 010883          279 ---------------------------------V-NTVCFGDESGHLIYSGSDD----------------NLCKVWDRRC  308 (498)
Q Consensus       279 ---------------------------------v-~~~~~~~~~~~~l~s~s~d----------------g~i~vwd~~~  308 (498)
                                                       + ..+++. +...+++.+..+                +.|..+|.. 
T Consensus       209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~-  286 (599)
T 1w6s_A          209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD-  286 (599)
T ss_dssp             BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-
T ss_pred             cccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-
Confidence                                             0 123453 456677777655                378888987 


Q ss_pred             ccCCCceeEEecccc----------ccEEEEEEc-CCC---CEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          309 LNVKGKPAGVLMGHL----------EGITFIDSR-GDG---RYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       309 ~~~~~~~~~~~~~~~----------~~v~~l~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                         +++.+..++...          .++. +... .+|   ..++.++.+|.+.++|.++.+...
T Consensus       287 ---TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          287 ---TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             ---TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ---CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence               666665554321          1222 2222 467   467778899999999998876543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.91  E-value=4.2e-07  Score=90.50  Aligned_cols=311  Identities=12%  Similarity=0.097  Sum_probs=167.3

Q ss_pred             CCEEEEEEC-CCeEEEEEC-CCCeEEEEEeecCCCce-------eE-EEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883          143 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  212 (498)
Q Consensus       143 g~~la~~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~~-------~v-~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~  212 (498)
                      +..+++++. ++.|.-+|. .+|+.+.+.........       .+ ..++.  .+..+++++.|+.|..+|..+|+...
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445666666 889999999 89977766533221100       00 01112  35677788889999999999998866


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCC--------
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD--------  278 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~--------  278 (498)
                      ............       ....++.    . ++ .+++++.      ++.|+.+|..+++.+-++......        
T Consensus       140 ~~~~~~~~~~~~-------~~~~P~v----~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~  206 (571)
T 2ad6_A          140 EVEVCDPKVGST-------LTQAPFV----A-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKD  206 (571)
T ss_dssp             EEECCCGGGTCB-------CCSCCEE----E-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred             EecCCCCCccce-------eccCCEE----E-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcc
Confidence            544332110000       0011111    1 34 4666654      789999999999988766532111        


Q ss_pred             ------------------------------eeEEEEeCCCCCEEEEeeCC----------------CeEEEEcCccccCC
Q 010883          279 ------------------------------VNTVCFGDESGHLIYSGSDD----------------NLCKVWDRRCLNVK  312 (498)
Q Consensus       279 ------------------------------v~~~~~~~~~~~~l~s~s~d----------------g~i~vwd~~~~~~~  312 (498)
                                                    ...+++. +....++.+..+                +.|..+|..    +
T Consensus       207 ~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----t  281 (571)
T 2ad6_A          207 FNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----T  281 (571)
T ss_dssp             TTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----T
T ss_pred             cccccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----C
Confidence                                          0124554 444566665532                358888987    6


Q ss_pred             CceeEEecc--c--------cccEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCc
Q 010883          313 GKPAGVLMG--H--------LEGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP  379 (498)
Q Consensus       313 ~~~~~~~~~--~--------~~~v~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (498)
                      ++.+..+..  |        ..++. +....+|+   .++.++.+|.+.++|..+.+.......... ..|.. .+... 
T Consensus       282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~-~~w~~-~~d~~-  357 (571)
T 2ad6_A          282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA-VNVFK-KVDLK-  357 (571)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT-CCSEE-EECTT-
T ss_pred             CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC-ccccc-ccccc-
Confidence            666655542  1        12222 22234674   577888999999999988654433221110 00000 00000 


Q ss_pred             Cccccc------CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-----------------------------
Q 010883          380 QARDLK------HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-----------------------------  424 (498)
Q Consensus       380 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-----------------------------  424 (498)
                      .+.-+.      .+..+......+.....    -...++|+|+..+|++.+                             
T Consensus       358 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  433 (571)
T 2ad6_A          358 TGTPVRDPEFATRMDHKGTNICPSAMGFH----NQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             TCSEEECGGGCCCTTCCEEEESSCTTCSS----CSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             CCceecccccCCCCCCCceEECCCCcccc----CCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence            000000      00000000000000000    001123444544444432                             


Q ss_pred             --------cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          425 --------HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       425 --------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                              .+|.|+.||+.+++.+.++... .++....+...+..++.++.||.|+.||..+++..
T Consensus       434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence                    3578999999999998887632 33444444445667777999999999999887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.89  E-value=6e-07  Score=91.32  Aligned_cols=167  Identities=15%  Similarity=0.202  Sum_probs=100.6

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCceecc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESL  213 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~~~  213 (498)
                      +..+++++.|+.|..+|..+|+.+......... ...+   .-+|  .+..++++..      ++.|..+|..+|+....
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~---~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI---TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC---CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCccee---cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            567888889999999999999877665432110 0111   1122  1334444432      58999999999988765


Q ss_pred             ccccccccCccc-------cccCC-C-------CceecEEEEEEcCCCCEEEEEeCCC-------------------eEE
Q 010883          214 ANVTEIHDGLDF-------SAADD-G-------GYSFGIFSLKFSTDGRELVAGSSDD-------------------CIY  259 (498)
Q Consensus       214 ~~~~~~~~~~~~-------~~~~~-~-------~h~~~i~~~~~s~~g~~l~~g~~dg-------------------~i~  259 (498)
                      ...........+       ..... .       ++......+++.+++..++.++.++                   .|.
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            543211000000       00000 0       1111223578888888888887766                   499


Q ss_pred             EEECCCCeeeEEEec--cC-------CCeeEEEEeCCCCC---EEEEeeCCCeEEEEcCccccCCCceeE
Q 010883          260 VYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAG  317 (498)
Q Consensus       260 vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~  317 (498)
                      .+|..+++.+-.+..  |.       .+.....+. .+++   .++.++.+|.++++|..    +++.+.
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~  338 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRT----NGKLIS  338 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEE
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECC----CCCEec
Confidence            999999998877753  22       222222222 2443   68899999999999987    666553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.88  E-value=8e-06  Score=85.28  Aligned_cols=285  Identities=7%  Similarity=0.080  Sum_probs=171.7

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-----CCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      ...|.++...++|.+.+ |+.++-|.+|+..++... .....     .-....|.++...++|.+.+ |+.+ -|.+|+.
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~  289 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE  289 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence            46789999888887655 444444889998876332 22111     11134699999998887554 4455 4889998


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-------cCCC
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-------HTSD  278 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~  278 (498)
                      .++..............         -....|.++...++|. |..|+.++-|..|+..+.... .+..       ....
T Consensus       290 ~~~~~~~~~~~~~~~~~---------l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~  358 (795)
T 4a2l_A          290 GTDSFASYSSNPVENGS---------LSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNV  358 (795)
T ss_dssp             TTTEEEEECCCTTSTTS---------CSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSS
T ss_pred             CCCeEEEEecCCCCCCC---------CCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCe
Confidence            87765433221110000         1123699999999987 677777777999987665432 2211       2346


Q ss_pred             eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--------cccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--------GHLEGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      |.++... .+++ |..|+.++-|..||..    .........        .....|.++...++++.|..|+.++-|.+|
T Consensus       359 V~~i~~d-~~g~-lWiGt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          359 VSCIVED-KDKN-LWIGTNDGGLNLYNPI----TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             EEEEEEC-TTSC-EEEEESSSCEEEECTT----TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred             eEEEEEC-CCCC-EEEEECCCCeEEEcCC----CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence            8888874 5555 4567778788999975    322222111        123568999998888856667777779999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC---ceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDS  427 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  427 (498)
                      |..+..                                   +..+...   .....+    ++....++|.+.+ |+.+ 
T Consensus       433 d~~~~~-----------------------------------~~~~~~~~~~l~~~~v----~~i~~d~~g~lwi-gt~~-  471 (795)
T 4a2l_A          433 HRNSGQ-----------------------------------VENFNQRNSQLVNENV----YAILPDGEGNLWL-GTLS-  471 (795)
T ss_dssp             ETTTCC-----------------------------------EEEECTTTSCCSCSCE----EEEEECSSSCEEE-EESS-
T ss_pred             eCCCCc-----------------------------------EEEeecCCCCcCCCee----EEEEECCCCCEEE-EecC-
Confidence            987632                                   1111100   000011    1112333566444 4444 


Q ss_pred             eEEEEECCCCcEEEEecc------CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          428 CVYVYDLVSGEQVAALKY------HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       428 ~i~iwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      -|.+||..+++.......      ....|.++...++|.+.+.+.  +-|..|+..+.
T Consensus       472 Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~  527 (795)
T 4a2l_A          472 ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL  527 (795)
T ss_dssp             CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred             ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence            489999887754432211      235789999999998666554  45777876543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.87  E-value=1.8e-07  Score=82.34  Aligned_cols=196  Identities=10%  Similarity=0.049  Sum_probs=128.8

Q ss_pred             EEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccC-CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883          237 IFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG  313 (498)
Q Consensus       237 i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  313 (498)
                      ...+.|++++.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  ++.+.++.-.++.+.++|..    +.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~----t~   96 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR----TL   96 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT----TT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC----CC
Confidence            578899998754444443  5799999999999988875322 233456664  34555555678999999997    66


Q ss_pred             ceeEEeccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          314 KPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       314 ~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      +.+..+... ..+   ..+++|++.++++..++.|.++|..+..                                  .+
T Consensus        97 ~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~----------------------------------v~  139 (266)
T 2iwa_A           97 SNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFK----------------------------------LI  139 (266)
T ss_dssp             EEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCC----------------------------------EE
T ss_pred             cEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCc----------------------------------EE
Confidence            677666432 222   3345577767666678899999998743                                  22


Q ss_pred             EEEccCc---eeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC-------------CCCeeeeEEc
Q 010883          393 ATYKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWH  456 (498)
Q Consensus       393 ~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~s  456 (498)
                      ..+....   ........    .|. +|.+.+....++.|.+.|..+++.+..+...             ....+.++|+
T Consensus       140 ~~I~Vg~~~~p~~~~nel----e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~  214 (266)
T 2iwa_A          140 KKHNVKYNGHRVIRLNEL----EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD  214 (266)
T ss_dssp             EEEECEETTEECCCEEEE----EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred             EEEEECCCCcccccceeE----EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence            2222111   10011111    222 5655555556789999999999998888631             1345899999


Q ss_pred             CCCC-eEEEEeCCCcEEEecCCCCC
Q 010883          457 PSQP-MLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       457 p~~~-~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      |+++ +++++...+.|.+-++....
T Consensus       215 ~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          215 QENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             TTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             CCCCEEEEECCCCCeEEEEEEeccc
Confidence            9987 66666678889988887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.86  E-value=3e-06  Score=78.06  Aligned_cols=202  Identities=15%  Similarity=0.114  Sum_probs=123.0

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCC-----------------CceeEEEEEeCC-CCCeEEEE
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-----------------LRWTVTDTSLSP-DQRHLVYA  194 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~sp-~~~~l~~~  194 (498)
                      ...+++|+++|+++.++..++.|..|+..++... .......                 ....+..+++.+ +++ |+++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            3457889999997888888999999998765322 2111110                 012578899998 555 5555


Q ss_pred             ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeC-----------------CC
Q 010883          195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS-----------------DD  256 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~-----------------dg  256 (498)
                      ...+.|..+|..++..........   +         ........+++.+ +|+..++-..                 ++
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~---~---------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVD---G---------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEET---T---------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCC---C---------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence            555568888877654322211100   0         0011467899999 9986665432                 36


Q ss_pred             eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883          257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG  335 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  335 (498)
                      .|..||..+++..... ........++++ ++++.|+.+ +..+.|.+|++.... .+. ...+....+ ...+++.++|
T Consensus       166 ~v~~~d~~~~~~~~~~-~~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~-~~~-~~~~~~~~g-P~gi~~d~~G  240 (322)
T 2fp8_A          166 RLIKYDPSTKETTLLL-KELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPK-KGT-AEVLVKIPN-PGNIKRNADG  240 (322)
T ss_dssp             EEEEEETTTTEEEEEE-EEESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTT-TTC-EEEEEECSS-EEEEEECTTS
T ss_pred             eEEEEeCCCCEEEEec-cCCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCc-CCc-cceEEeCCC-CCCeEECCCC
Confidence            7999998777653322 222445789997 677755544 566899999986221 111 111111223 6788999999


Q ss_pred             CEEEEEeC----------CCcEEEEeCC
Q 010883          336 RYLISNGK----------DQAIKLWDIR  353 (498)
Q Consensus       336 ~~l~s~~~----------dg~i~iwd~~  353 (498)
                      +++++...          .+.|..+|..
T Consensus       241 ~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          241 HFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             CEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             CEEEEecCcccccccCCCccEEEEECCC
Confidence            87776544          3556666653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=1.2e-05  Score=83.95  Aligned_cols=282  Identities=11%  Similarity=0.107  Sum_probs=169.9

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL  213 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~  213 (498)
                      |.++...++|++.+ |+.++.|..|+..++.... .. .......|.++...+++.+.+ ++.++-+.+||..+++....
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~-~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~  250 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK-VI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY  250 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE-CC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE-ec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence            88999988887655 5555558899987763322 11 111234688888877777555 44444488899887665433


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-------cCCCeeEEEEeC
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-------HTSDVNTVCFGD  286 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~  286 (498)
                      .........         -....|.++...++|. |..|+.+| |.+||..+++.......       ....|.++... 
T Consensus       251 ~~~~~~~~~---------l~~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-  318 (795)
T 4a2l_A          251 LHSPSNPKS---------ISSNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD-  318 (795)
T ss_dssp             CCCTTCTTS---------CSCSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-
T ss_pred             ecCCCCccc---------cCCCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-
Confidence            211000000         0123699999998887 55566664 89999887765332211       23568888874 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-------cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA  359 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  359 (498)
                      .++. |..|+.++-|..|+...    .. ...+.       -....|.++...++|.+ ..|+.++-|..||..+..   
T Consensus       319 ~~g~-lWigt~~~Gl~~~~~~~----~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~---  388 (795)
T 4a2l_A          319 SQGG-MWLGTYFGGLNYYHPIR----NR-FKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQR---  388 (795)
T ss_dssp             TTSC-EEEEESSSCEEEECGGG----GS-SEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCC---
T ss_pred             CCcC-EEEEECCCCeEEeCCCc----cc-ceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCc---
Confidence            5665 45677777888888641    11 11111       12356999999888874 457777779999976521   


Q ss_pred             ccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-------eeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883          360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-------VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY  432 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  432 (498)
                                                      +..+....       ....+    .+....++|++|.+|+.++-|.+|
T Consensus       389 --------------------------------~~~~~~~~~~~~~~l~~~~v----~~i~~d~~g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          389 --------------------------------FTSYTLQEDESARGIGSNNI----KAVYVDEKKSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             --------------------------------EEEECCC------CCSCSCE----EEEEEETTTTEEEEEETTTEEEEE
T ss_pred             --------------------------------EEEEecCCCCcccCCCCccE----EEEEEcCCCCEEEEEeCcCceeEE
Confidence                                            11111000       00111    112233467757778887789999


Q ss_pred             ECCCCcEEEEec----cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          433 DLVSGEQVAALK----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       433 d~~~~~~~~~~~----~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      |..+++......    .+...|.++...+++.+.+.+ .+ -|.+|+..++
T Consensus       433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~  481 (795)
T 4a2l_A          433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR  481 (795)
T ss_dssp             ETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT
T ss_pred             eCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC
Confidence            998876543321    134578999998888865554 44 4778886543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.81  E-value=9.3e-06  Score=70.95  Aligned_cols=210  Identities=11%  Similarity=0.087  Sum_probs=134.7

Q ss_pred             cccCCCCceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      .+.+....+..++|+|++..|+ +...++.|...|.. ++.+..... .+. ...-.|++.+++.++++.-.++.+.+++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DFV-KDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            4556677899999999876555 56678889999988 655554432 222 3577888999888766655678899998


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeeeEEEe-------c
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRIL-------A  274 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~---~~~~~~~~~-------~  274 (498)
                      +..............  .  +   ...........++|+|+++.|+++.......+|.+.   ....+..+.       .
T Consensus        98 v~~~~~i~~~~~~~~--~--~---~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           98 LTPNSEVKILKKIKI--P--L---QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             ECTTCCEEEEEEEEC--C--C---SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             cCCCCeeeeeeeecc--c--c---ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            865442111111100  0  0   001123368899999998777777665444444443   111122221       1


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc---------ccEEEEEEcCCCCEEEEEeCCC
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISNGKDQ  345 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~s~~~dg  345 (498)
                      +...+..+++.|..+++++.......+..+|..     ++.+..+.-..         .....|++.++|++.++ +...
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n  244 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN  244 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc
Confidence            334678999998888888888889999999974     55544433221         25688999999985555 5656


Q ss_pred             cEEEEe
Q 010883          346 AIKLWD  351 (498)
Q Consensus       346 ~i~iwd  351 (498)
                      .++.+.
T Consensus       245 ~~y~f~  250 (255)
T 3qqz_A          245 RFYRFT  250 (255)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            555554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.81  E-value=7.4e-06  Score=81.52  Aligned_cols=308  Identities=11%  Similarity=0.054  Sum_probs=154.1

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCceeccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~~~~  214 (498)
                      +..+++++.|+.|..+|..+|+.+.+..... +... ..+.-+|  .+..+++++.      ++.|..+|..+++.....
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            5678888889999999999997776644322 1000 0111122  2334555554      789999999999876554


Q ss_pred             cccccccCc----------ccc------ccC------CCCceecEEEEEEcCCCCEEEEEeCC----------------C
Q 010883          215 NVTEIHDGL----------DFS------AAD------DGGYSFGIFSLKFSTDGRELVAGSSD----------------D  256 (498)
Q Consensus       215 ~~~~~~~~~----------~~~------~~~------~~~h~~~i~~~~~s~~g~~l~~g~~d----------------g  256 (498)
                      .........          .+.      ...      ..+.......+++.++...++.+..+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            432211000          000      000      00000011235666766667666532                3


Q ss_pred             eEEEEECCCCeeeEEEec--cCC----CeeEEEEeC--CCC---CEEEEeeCCCeEEEEcCccccCCCceeEEecccc--
Q 010883          257 CIYVYDLEANKLSLRILA--HTS----DVNTVCFGD--ESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL--  323 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~--~~~----~v~~~~~~~--~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--  323 (498)
                      .|..+|..+++.+-.+..  |..    .+....+..  .++   ..++.++.+|.+.++|..    +++.+.......  
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~~~w~~~~~~~~  348 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE----NGNLIVAEKVDPAV  348 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT----TCCEEEEEESSTTC
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC----CCCEEeeecccCCc
Confidence            699999999998877653  211    112222211  245   367788999999999987    555554432111  


Q ss_pred             -----------ccE--------------------------EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883          324 -----------EGI--------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       324 -----------~~v--------------------------~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                                 .++                          ..++++|+..++++...+....++.....-.......+  
T Consensus       349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g--  426 (571)
T 2ad6_A          349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG--  426 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC--
T ss_pred             cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc--
Confidence                       111                          23577888888887776544444433221000000000  


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCceeE-EEEEE---EeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIRC---HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA  442 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  442 (498)
                         ....... .+...  .......+..+....... .....   .+...+...+..++.++.||.|+.||..+|+.+..
T Consensus       427 ---~~~~~~~-~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          427 ---ATLAMYP-GPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             ---EEEEEEE-CTTST--TSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ---ccceecc-Ccccc--CCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence               0000000 00000  000012222222111000 00000   01111222466788899999999999999999988


Q ss_pred             eccCCCC-eeeeEEcCCCCeEEE
Q 010883          443 LKYHTSP-VRDCSWHPSQPMLVS  464 (498)
Q Consensus       443 ~~~h~~~-v~~l~~sp~~~~l~s  464 (498)
                      ++..... -.-+.+..+|+.++.
T Consensus       501 ~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          501 FKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEE
T ss_pred             EeCCCCcEeeeEEEEECCEEEEE
Confidence            8743221 122345577874443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.80  E-value=1.6e-05  Score=79.22  Aligned_cols=315  Identities=11%  Similarity=0.061  Sum_probs=158.3

Q ss_pred             EEEcCCCCE----EEEEECCCeEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCC---CCCeEEEEE------CCCeEEE
Q 010883          137 SQFSADGSL----FVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP---DQRHLVYAS------MSPIVHI  202 (498)
Q Consensus       137 ~~~s~dg~~----la~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp---~~~~l~~~s------~d~~i~i  202 (498)
                      ++++|.+..    |+.++.|+.|..+|..+|+.+.+....... ...++   -+|   ++ .+++++      .++.|+.
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~---ssP~v~~g-~V~vg~~g~e~g~~g~v~A  186 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLT---IAPYVVKD-KVIIGSSGAELGVRGYLTA  186 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCC---SCCEEETT-EEEECCBCGGGTCCCEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceee---cCCEEECC-EEEEEecccccCCCCeEEE
Confidence            345444434    788888999999999999877664332200 00111   112   44 444444      3789999


Q ss_pred             EECCCCceeccccccccccCc------cccc----------cCCCC----c-eecE-EEEEEcCCCCEEEEEeCC-----
Q 010883          203 VDVGSGTMESLANVTEIHDGL------DFSA----------ADDGG----Y-SFGI-FSLKFSTDGRELVAGSSD-----  255 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~------~~~~----------~~~~~----h-~~~i-~~~~~s~~g~~l~~g~~d-----  255 (498)
                      +|..+|+..............      .+..          ..-.+    + ...+ ..+++.++...++.+..+     
T Consensus       187 ~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~  266 (599)
T 1w6s_A          187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWN  266 (599)
T ss_dssp             EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred             EECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcccc
Confidence            999999876554433211000      0000          00000    0 0001 134566777777777665     


Q ss_pred             -----------CeEEEEECCCCeeeEEEeccCCC------e---eEEEEeCCCC---CEEEEeeCCCeEEEEcCccccCC
Q 010883          256 -----------DCIYVYDLEANKLSLRILAHTSD------V---NTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVK  312 (498)
Q Consensus       256 -----------g~i~vwd~~~~~~~~~~~~~~~~------v---~~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~  312 (498)
                                 +.|..+|..+++.+-.+......      .   .-+.....++   ..++.++.+|.+.++|..    +
T Consensus       267 ~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~----t  342 (599)
T 1w6s_A          267 ETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT----D  342 (599)
T ss_dssp             GGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT----T
T ss_pred             CcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECC----C
Confidence                       38999999999988776532211      1   1122211345   567788999999999987    5


Q ss_pred             CceeEEeccc-------------cccE--------------------------EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          313 GKPAGVLMGH-------------LEGI--------------------------TFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       313 ~~~~~~~~~~-------------~~~v--------------------------~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      ++.+......             ..++                          ..++++|+..++++...+-...++..+
T Consensus       343 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  422 (599)
T 1w6s_A          343 GALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFM  422 (599)
T ss_dssp             CCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred             CCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccc
Confidence            6655443211             0011                          245788888888777655433333222


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE-EEEEE---EeccccCCCCcEEEEEecCCeE
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIRC---HFSPVYSTGQKYIYTGSHDSCV  429 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~s~~~~~l~~g~~dg~i  429 (498)
                      ...........     .... +...+.......+....+..+....... .....   .+.......+.+++.++.||.|
T Consensus       423 ~~~~~g~~~~g-----~~~~-~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l  496 (599)
T 1w6s_A          423 LPYKAGQFFVG-----ATLN-MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYL  496 (599)
T ss_dssp             CCCCTTSCCCC-----EEEE-EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEE
T ss_pred             ccccCCcceec-----ccce-eccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeE
Confidence            10000000000     0000 0000000000000112222222221100 00000   0111122256778889999999


Q ss_pred             EEEECCCCcEEEEeccCCCCe-eeeEEcCCCC-eEEEE
Q 010883          430 YVYDLVSGEQVAALKYHTSPV-RDCSWHPSQP-MLVSS  465 (498)
Q Consensus       430 ~iwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~-~l~s~  465 (498)
                      +.||..+|+.+..++...+.+ .-+.+..+|+ ++++.
T Consensus       497 ~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          497 KARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence            999999999998887433222 2345666887 44443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.80  E-value=4.9e-06  Score=76.64  Aligned_cols=253  Identities=8%  Similarity=0.067  Sum_probs=144.8

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCcccccc----CCCCceecEEEEEEcC-CCCEEEEE
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA----DDGGYSFGIFSLKFST-DGRELVAG  252 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~i~~~~~s~-~g~~l~~g  252 (498)
                      ...+++|.++++++.++..++.|..|+..++........... ........    ........+..+++.+ +++ |+++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY-WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTT-CCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccccc-ccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            356788999999888888899999999876554322110000 00000000    0000112478899998 664 6666


Q ss_pred             eCCCeEEEEECCCCeeeEEEec-----cCCCeeEEEEeCC-CCCEEEEeeC-----------------CCeEEEEcCccc
Q 010883          253 SSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDE-SGHLIYSGSD-----------------DNLCKVWDRRCL  309 (498)
Q Consensus       253 ~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~l~s~s~-----------------dg~i~vwd~~~~  309 (498)
                      ...+.|..+|..+++. ..+..     .......+++. + ++++.++-..                 ++.|..||..  
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--  173 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS--  173 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT--
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCC--
Confidence            5556688898776543 22221     11346788886 6 7776665432                 3678888864  


Q ss_pred             cCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCC
Q 010883          310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC  388 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (498)
                        .+. +..+.........++++|+++.|+.+ ...+.|.+|++.......                             
T Consensus       174 --~~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-----------------------------  221 (322)
T 2fp8_A          174 --TKE-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-----------------------------  221 (322)
T ss_dssp             --TTE-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-----------------------------
T ss_pred             --CCE-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-----------------------------
Confidence              232 22222222345678999999866555 556889999987521000                             


Q ss_pred             CceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec----------CCeEEEEECCCCcEEEEeccCC----CCeeeeE
Q 010883          389 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALKYHT----SPVRDCS  454 (498)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~  454 (498)
                      ...+....+      .    ...+++++|++.++...          .+.|..+|. .++.+..+....    ..++.++
T Consensus       222 ~~~~~~~~g------P----~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~  290 (322)
T 2fp8_A          222 AEVLVKIPN------P----GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQ  290 (322)
T ss_dssp             EEEEEECSS------E----EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEE
T ss_pred             cceEEeCCC------C----CCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEE
Confidence            011111111      1    11245568876666544          467888886 477777765332    3466777


Q ss_pred             EcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          455 WHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       455 ~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      + .++.++++...++.|.++++....
T Consensus       291 ~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          291 E-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             E-ETTEEEEECSSCSEEEEEEC----
T ss_pred             E-eCCEEEEeecCCCceEEEeccccc
Confidence            6 466666666678889999886443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.80  E-value=1.3e-06  Score=75.89  Aligned_cols=181  Identities=15%  Similarity=0.137  Sum_probs=123.6

Q ss_pred             ceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCc
Q 010883          133 RAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT  209 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~  209 (498)
                      -...+.|+ ++.++.+.+.+|  .|+++|+.+++.+........    .......++++.|.... .++.+.++|..+.+
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~----~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR----YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT----CCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc----cceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence            34778898 777777777766  899999999987776644322    22222223455555544 58899999999988


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEE
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCF  284 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~  284 (498)
                      ....+....  .                 ...+++|++.|+....++.|.++|..+.+.+.++....     ..++.+.|
T Consensus       119 ~~~ti~~~~--e-----------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~  179 (262)
T 3nol_A          119 QVRSFNYDG--E-----------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW  179 (262)
T ss_dssp             EEEEEECSS--C-----------------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEEEECCC--C-----------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence            766555421  1                 12233567777777667889999999998888776421     34566888


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------------cccEEEEEEcCCCCEEEEEeC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------LEGITFIDSRGDGRYLISNGK  343 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------------~~~v~~l~~~~~~~~l~s~~~  343 (498)
                      .  ++.+++..-.++.|.+.|..    +++.+..+...            ....+.|+++|+++.|++.+.
T Consensus       180 ~--~G~lyan~w~~~~I~vIDp~----tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          180 V--DGEIFANVWQTNKIVRIDPE----TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             E--TTEEEEEETTSSEEEEECTT----TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             E--CCEEEEEEccCCeEEEEECC----CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            5  56666555578899999998    66666655431            135689999999887777664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.79  E-value=1.2e-06  Score=76.09  Aligned_cols=181  Identities=13%  Similarity=0.127  Sum_probs=118.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEeccCCCee--EEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883          237 IFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILAHTSDVN--TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK  312 (498)
Q Consensus       237 i~~~~~s~~g~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  312 (498)
                      ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+.++.-. ....  .++..  ++.+.+..-.++.+.+||..    +
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~----t  116 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR----N  116 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEe--CCEEEEEEeeCCEEEEEECc----c
Confidence            5678888 676666777666  8999999999998887543 3333  35553  34455555568999999998    7


Q ss_pred             CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       313 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      .+.+.++.....+ ..+  .+|++.|+.+..++.|.++|..+.+.                                  +
T Consensus       117 ~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v----------------------------------~  159 (262)
T 3nol_A          117 LRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTP----------------------------------V  159 (262)
T ss_dssp             CCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSE----------------------------------E
T ss_pred             CcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeE----------------------------------E
Confidence            7777777643322 233  35677777666678899999987432                                  2


Q ss_pred             EEEccC---ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC------------CCCeeeeEEcC
Q 010883          393 ATYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH------------TSPVRDCSWHP  457 (498)
Q Consensus       393 ~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~l~~sp  457 (498)
                      ..+...   .....+....+.     +|++.+....++.|.+.|..+++.+..+...            ..-.+.++|+|
T Consensus       160 ~~I~V~~~g~~~~~lNELe~~-----~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp  234 (262)
T 3nol_A          160 RTITVTAHGEELPELNELEWV-----DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK  234 (262)
T ss_dssp             EEEECEETTEECCCEEEEEEE-----TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred             EEEEeccCCccccccceeEEE-----CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence            222211   111111112221     6765555556889999999999998887632            13458899999


Q ss_pred             CCCeEEEEeC
Q 010883          458 SQPMLVSSSW  467 (498)
Q Consensus       458 ~~~~l~s~~~  467 (498)
                      +++.|+.++.
T Consensus       235 ~~~~lfVTGK  244 (262)
T 3nol_A          235 EHHRLFVTGK  244 (262)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCEEEEECC
Confidence            9886666654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.77  E-value=3e-05  Score=77.20  Aligned_cols=202  Identities=12%  Similarity=0.092  Sum_probs=115.9

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCcee------EEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT------VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV  216 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~------v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~  216 (498)
                      +..+++++.++.|.-+|..+|+.+.+..........      -..+++  .+..+++++.++.|..+|..+|+.......
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            344555556445999999999877665433221100      011111  356677888999999999999988765443


Q ss_pred             cccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeC------CCeEEEEECCCCeeeEEEeccCCCe----------
Q 010883          217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSS------DDCIYVYDLEANKLSLRILAHTSDV----------  279 (498)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~v----------  279 (498)
                      .........       ...++.. .=..+|+ .+++++.      ++.|+-+|..+++.+-........+          
T Consensus       146 ~~~~~~~~~-------~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~  217 (582)
T 1flg_A          146 ADHGAGYTM-------TGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTV  217 (582)
T ss_dssp             SCGGGTCBC-------CSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEE
T ss_pred             CCCCcCccc-------ccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccc
Confidence            321100000       0112210 0011233 5556543      7899999999998876543211000          


Q ss_pred             -------------------------------eEEEEeCCCCCEEEEeeC--------------------C----CeEEEE
Q 010883          280 -------------------------------NTVCFGDESGHLIYSGSD--------------------D----NLCKVW  304 (498)
Q Consensus       280 -------------------------------~~~~~~~~~~~~l~s~s~--------------------d----g~i~vw  304 (498)
                                                     ..+++. +...+++.+..                    |    +.|..+
T Consensus       218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d-~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~Al  296 (582)
T 1flg_A          218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD-AETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGV  296 (582)
T ss_dssp             SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEE-TTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEE
T ss_pred             ccccccccCCCccccccccccccccCCccccCCceEc-CCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEE
Confidence                                           123454 44566766653                    2    589999


Q ss_pred             cCccccCCCceeEEecc--cc--------ccEEEEEEc-CCCC---EEEEEeCCCcEEEEeCCCCCCccc
Q 010883          305 DRRCLNVKGKPAGVLMG--HL--------EGITFIDSR-GDGR---YLISNGKDQAIKLWDIRKMSSNAS  360 (498)
Q Consensus       305 d~~~~~~~~~~~~~~~~--~~--------~~v~~l~~~-~~~~---~l~s~~~dg~i~iwd~~~~~~~~~  360 (498)
                      |..    +++.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|..+.+....
T Consensus       297 D~~----TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  361 (582)
T 1flg_A          297 DPS----SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA  361 (582)
T ss_dssp             CTT----TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eCC----CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence            987    7777766542  21        2222 2222 4674   788899999999999988765433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.75  E-value=1.8e-05  Score=70.62  Aligned_cols=234  Identities=9%  Similarity=-0.012  Sum_probs=132.3

Q ss_pred             CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe
Q 010883          189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK  267 (498)
Q Consensus       189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~  267 (498)
                      .+|+.+.. +.|+.+++...............           .....+..++|++++..|+.+. .++.|..+++....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~   69 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLH-----------IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE   69 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE-----------EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeec-----------CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC
Confidence            45555553 47888888765432110000000           0012578999999766565554 56899999997765


Q ss_pred             eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC---C
Q 010883          268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---D  344 (498)
Q Consensus       268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---d  344 (498)
                      ....+.........+++.+..+.++++-...+.|.++++.    .................++++|++..|+.+..   .
T Consensus        70 ~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~----g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~  145 (267)
T 1npe_A           70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN  145 (267)
T ss_dssp             CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred             cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC----CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC
Confidence            4333323335678999974445555566667899999985    21111122222245789999997665555443   3


Q ss_pred             CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883          345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS  424 (498)
Q Consensus       345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  424 (498)
                      +.|..+++....                                   ...+.... ....    ..+++++++..|+.+.
T Consensus       146 ~~I~~~~~dg~~-----------------------------------~~~~~~~~-~~~P----~gia~d~~~~~lyv~d  185 (267)
T 1npe_A          146 PKIETSHMDGTN-----------------------------------RRILAQDN-LGLP----NGLTFDAFSSQLCWVD  185 (267)
T ss_dssp             CEEEEEETTSCC-----------------------------------CEEEECTT-CSCE----EEEEEETTTTEEEEEE
T ss_pred             cEEEEEecCCCC-----------------------------------cEEEEECC-CCCC----cEEEEcCCCCEEEEEE
Confidence            578888775411                                   01110000 0111    2235566766665554


Q ss_pred             -cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          425 -HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       425 -~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                       ..+.|.++|+........+.. ......++.. .+.++++....+.|.+++..++.
T Consensus       186 ~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          186 AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence             468999999876544433332 2334566664 33344444456889999987654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.75  E-value=2.6e-06  Score=73.96  Aligned_cols=179  Identities=11%  Similarity=0.050  Sum_probs=119.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee--EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883          237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN--TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK  314 (498)
Q Consensus       237 i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  314 (498)
                      ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+  -.....  .+++  .++.+....-.++.+.+||..    +.+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~----Tl~  127 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGM----PPQ  127 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETT----TTE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECC----cCc
Confidence            4667787 4666777778889999999999988877  223333  3555  345666666678999999998    777


Q ss_pred             eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEE
Q 010883          315 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT  394 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (498)
                      .+.++.....+ ..++  +|++.|+.+..++.|.++|..+.+.                                  +..
T Consensus       128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v----------------------------------~~~  170 (268)
T 3nok_A          128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFAL----------------------------------VGA  170 (268)
T ss_dssp             EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCE----------------------------------EEE
T ss_pred             EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeE----------------------------------EEE
Confidence            77777643332 3344  4677787777788999999887432                                  222


Q ss_pred             EccC---ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC-------------CCCeeeeEEcCC
Q 010883          395 YKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWHPS  458 (498)
Q Consensus       395 ~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~  458 (498)
                      +...   .....+....+.     +|++.+....+..|.+.|..+++.+..+...             ..-.+.++|+|+
T Consensus       171 I~V~~~g~~v~~lNeLe~~-----dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          171 VQVKLRGQPVELINELECA-----NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EECEETTEECCCEEEEEEE-----TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             EEeCCCCcccccccccEEe-----CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            2211   111111222221     6765555556889999999999998887521             135688999998


Q ss_pred             CCeEEEEe
Q 010883          459 QPMLVSSS  466 (498)
Q Consensus       459 ~~~l~s~~  466 (498)
                      ++.|+..+
T Consensus       246 ~~rlfVTG  253 (268)
T 3nok_A          246 SGRIFMTG  253 (268)
T ss_dssp             TCCEEEEE
T ss_pred             CCEEEEeC
Confidence            77555554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.74  E-value=1.8e-05  Score=72.16  Aligned_cols=228  Identities=8%  Similarity=-0.020  Sum_probs=133.0

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--  255 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--  255 (498)
                      ....++|+|+++++++-..++.|..||..+... ......                 ..+..+++.++|+++++....  
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~~~-----------------~~p~gia~~~dG~l~vad~~~~~   94 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVE-----------------GKVSGLAFTSNGDLVATGWNADS   94 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECS-----------------SEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEeCC-----------------CCceeEEEcCCCcEEEEeccCCc
Confidence            467899999998666665788999998775422 211110                 157889999999965555432  


Q ss_pred             CeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc-eeEE---------eccccc
Q 010883          256 DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV---------LMGHLE  324 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~---------~~~~~~  324 (498)
                      ..|..+|..+++...... ........++.. +++..+++-..++.|.++|..    .+. .+..         ......
T Consensus        95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~----~~~~~v~~~~~~~~~~~~~~~~~  169 (306)
T 2p4o_A           95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVV----QPSGSIWLEHPMLARSNSESVFP  169 (306)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETT----TTEEEEEEECGGGSCSSTTCCSC
T ss_pred             ceEEEEcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCC----CCcEeEEEECCccccccccCCCC
Confidence            247778887777543222 112233455543 444445554468899999875    221 1110         001112


Q ss_pred             cEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          325 GITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      ....+  +|+++.|+. -...+.|..+++........                            .+.+..+.       
T Consensus       170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~----------------------------~~~~~~~~-------  212 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE----------------------------PEIFVEQT-------  212 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC----------------------------CEEEEESC-------
T ss_pred             cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc----------------------------cEEEeccC-------
Confidence            34555  778876654 44567899999864100000                            01111110       


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE--EEeccCCCCeeeeEEc---CCCCeEEEEeCCC
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALKYHTSPVRDCSWH---PSQPMLVSSSWDG  469 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s---p~~~~l~s~~~Dg  469 (498)
                         ....++++++|++.++....+.|.++|.. ++..  ..+.......++++|.   |++..|+.++..+
T Consensus       213 ---~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          213 ---NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ---CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ---CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence               01223566789877666667899999975 6653  2344334568999998   8887666665543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.72  E-value=2e-05  Score=71.87  Aligned_cols=197  Identities=13%  Similarity=0.070  Sum_probs=118.1

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-C-eEEEEECCCCc
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-IVHIVDVGSGT  209 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~-~i~iwd~~~~~  209 (498)
                      .....++|+++|+++++-..++.|..||.... .. .....   ...+..+++.++++++++.... + .|..++..+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~-~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ-IHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EE-EEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eE-EEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            45678999999997777767899999998764 22 22222   2368899999999966655432 2 46677777776


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEe---------ccCCCe
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRIL---------AHTSDV  279 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~---------~~~~~v  279 (498)
                      ..........               .....++..+++..+++-..++.|+++|..+++. +....         ..-...
T Consensus       107 ~~~~~~~~~~---------------~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A          107 VETLLTLPDA---------------IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             EEEEEECTTC---------------SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             EEEEEeCCCc---------------cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence            5433222110               0123344455554444444588999999876532 11111         111234


Q ss_pred             eEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          280 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       280 ~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      +.+  + +++. ++++-...+.|..+++.... .......+. .......++++++|+++++....+.|.++|..
T Consensus       172 ngi--s-~dg~~lyv~d~~~~~I~~~~~~~~g-~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          172 NGL--K-RFGNFLYVSNTEKMLLLRIPVDSTD-KPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEE--E-EETTEEEEEETTTTEEEEEEBCTTS-CBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCc--C-cCCCEEEEEeCCCCEEEEEEeCCCC-CCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            555  4 4454 45555567899999986210 000111111 11234568899999888877778889999864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.69  E-value=9.4e-06  Score=69.83  Aligned_cols=183  Identities=15%  Similarity=0.089  Sum_probs=121.8

Q ss_pred             CCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE-EEECCCeEEEEECCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGS  207 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~  207 (498)
                      ..-...+.|++ +.++.+.+.+  +.|+++|+.+++.+.........-  --.+++  +++.|. ..-.++.+.++|..+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--geGi~~--~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--GAGIVA--WRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC--EEEEEE--ETTEEEEEESSSSEEEEEETTT
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc--eeEEEE--eCCEEEEEEeeCCEEEEEECCc
Confidence            34456889986 5666666664  489999999998777654433211  112333  344444 444688999999999


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEE
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTV  282 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~  282 (498)
                      .+....+....                 .-..++  +++..|+.+..++.|.++|..+.+.+.++.-..     ..++.+
T Consensus        95 l~~~~ti~~~~-----------------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           95 LTPRARFRYPG-----------------EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             TEEEEEEECSS-----------------CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             CcEEEEEeCCC-----------------CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence            88766555321                 112233  467777777778899999999998888776422     355677


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-------------cccEEEEEEcCCCCEEEEEeC
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYLISNGK  343 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~s~~~  343 (498)
                      .|.  ++.+++..-.+..|.+.|..    +++.+..+...             ..-.+.|+++|+++.|++.+.
T Consensus       156 e~~--~G~lyanvw~s~~I~vIDp~----tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          156 EWV--NGELLANVWLTSRIARIDPA----SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEE--TTEEEEEETTTTEEEEECTT----TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEe--CCEEEEEECCCCeEEEEECC----CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            875  56666555567899999998    66666554411             135689999998777766654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.69  E-value=2.2e-05  Score=78.19  Aligned_cols=172  Identities=16%  Similarity=0.171  Sum_probs=97.3

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCC-ceeEE---EEEeC-CCCC-eEEEEE------CCCeEEEEECCCCce
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVT---DTSLS-PDQR-HLVYAS------MSPIVHIVDVGSGTM  210 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~---~~~~s-p~~~-~l~~~s------~d~~i~iwd~~~~~~  210 (498)
                      +..++.++.|+.|..+|..+|+.+.+....... ...+.   .+.=. .+++ .+++++      .++.|..+|..+|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            567788889999999999999877665432210 00110   01100 1233 455554      378999999999987


Q ss_pred             eccccccccc--------------cCcc-cc-----------ccCCCCceecEEEEEEcCCCCEEEEEeC----------
Q 010883          211 ESLANVTEIH--------------DGLD-FS-----------AADDGGYSFGIFSLKFSTDGRELVAGSS----------  254 (498)
Q Consensus       211 ~~~~~~~~~~--------------~~~~-~~-----------~~~~~~h~~~i~~~~~s~~g~~l~~g~~----------  254 (498)
                      ..........              .+.. ..           .....+.. .-..+++.|+...++.+..          
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~-~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGA-PWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCC-CCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCcc-ccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            6643321100              0000 00           00000111 1124677777777777663          


Q ss_pred             ----------C----CeEEEEECCCCeeeEEEec--cCC----CeeEEEEeC---CCC---CEEEEeeCCCeEEEEcCcc
Q 010883          255 ----------D----DCIYVYDLEANKLSLRILA--HTS----DVNTVCFGD---ESG---HLIYSGSDDNLCKVWDRRC  308 (498)
Q Consensus       255 ----------d----g~i~vwd~~~~~~~~~~~~--~~~----~v~~~~~~~---~~~---~~l~s~s~dg~i~vwd~~~  308 (498)
                                |    +.|..+|..+++.+-.+..  |..    .+....+..   .++   ..++.++.+|.++++|.. 
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~-  354 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS-  354 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT-
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC-
Confidence                      2    5899999999998877653  321    111111111   345   378889999999999987 


Q ss_pred             ccCCCceeEEe
Q 010883          309 LNVKGKPAGVL  319 (498)
Q Consensus       309 ~~~~~~~~~~~  319 (498)
                         +++.+...
T Consensus       355 ---tG~~lw~~  362 (582)
T 1flg_A          355 ---NGKLQNAF  362 (582)
T ss_dssp             ---TCCEEEEE
T ss_pred             ---CCCEeccc
Confidence               55555443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.68  E-value=9.5e-06  Score=69.81  Aligned_cols=183  Identities=15%  Similarity=0.082  Sum_probs=117.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEEeccCCC-eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883          236 GIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK  312 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  312 (498)
                      -...+.|+. +.++.+.+.+  ..|+.+|+.+++.+.++.-.... -..+++.  ++++....-.++.+.+||..    +
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~----t   94 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA----T   94 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC----c
Confidence            366788886 5555555554  48999999999998877533222 2345553  45555566678999999997    7


Q ss_pred             CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       313 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      .+.+.++.....+ ..++  +++..|+.+..++.|.++|..+...                                  +
T Consensus        95 l~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~----------------------------------~  137 (243)
T 3mbr_X           95 LTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQ----------------------------------V  137 (243)
T ss_dssp             TEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCE----------------------------------E
T ss_pred             CcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeE----------------------------------E
Confidence            7777777644333 3444  4566666666688999999988432                                  2


Q ss_pred             EEEccC---ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC-------------CCCeeeeEEc
Q 010883          393 ATYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWH  456 (498)
Q Consensus       393 ~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~s  456 (498)
                      ..+...   .....+....+.     +|++.+....+..|.+.|..+++.+..+...             ..-.+.++|+
T Consensus       138 ~~I~V~~~g~~~~~lNeLe~~-----~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d  212 (243)
T 3mbr_X          138 GSIKVTAGGRPLDNLNELEWV-----NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD  212 (243)
T ss_dssp             EEEECEETTEECCCEEEEEEE-----TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred             EEEEEccCCcccccceeeEEe-----CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc
Confidence            222211   111111111111     6776655556889999999999998887521             1245889999


Q ss_pred             CCCCeEEEEeC
Q 010883          457 PSQPMLVSSSW  467 (498)
Q Consensus       457 p~~~~l~s~~~  467 (498)
                      |+++.|...+.
T Consensus       213 ~~~~~lfVTGK  223 (243)
T 3mbr_X          213 AEHDRLFVTGK  223 (243)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCEEEEECC
Confidence            98876655553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.66  E-value=2e-06  Score=88.88  Aligned_cols=196  Identities=14%  Similarity=0.088  Sum_probs=113.9

Q ss_pred             ceEEEEEc-CCCCEEEEEEC-CC----eEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-----CeE
Q 010883          133 RAYVSQFS-ADGSLFVAGFQ-AS----QIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIV  200 (498)
Q Consensus       133 ~v~~~~~s-~dg~~la~~~~-dg----~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i  200 (498)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+..     ........++|+||++.|+....+     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVSGTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----cccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            67889999 99999886543 22    5999999987 52211     111123468899999988887765     268


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe-ee--EEEe-
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANK-LS--LRIL-  273 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~-~~--~~~~-  273 (498)
                      .++++.++...........             .......+.|+|||++|+..+.   ...|+++|+.++. ..  ..+. 
T Consensus       250 ~~~~lgt~~~~~~lv~~~~-------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEH-------------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             EEEETTSCGGGCEEEEECC-------------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             EEEECCCCchhcEEEEecC-------------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence            8888877642211110000             0013567899999998887653   3468999998752 12  3332 


Q ss_pred             ccCCCeeEEEEeCCCCCEEEEeeCC--C--eEEEEcCccccCCCceeEE-eccccc--cEEEEEEcCCCCEEEEEeCCCc
Q 010883          274 AHTSDVNTVCFGDESGHLIYSGSDD--N--LCKVWDRRCLNVKGKPAGV-LMGHLE--GITFIDSRGDGRYLISNGKDQA  346 (498)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~l~s~s~d--g--~i~vwd~~~~~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~l~s~~~dg~  346 (498)
                      .......++.|+ .++.+++....+  +  .|..+|+.    ....... +..+..  .+..+.+. .+.++++...++.
T Consensus       317 ~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~----~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~  390 (751)
T 2xe4_A          317 REKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG----QPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGL  390 (751)
T ss_dssp             CCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT----STTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTE
T ss_pred             CCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC----CcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCE
Confidence            334555666664 444455554443  3  56666654    1111112 222333  34555554 2344556666775


Q ss_pred             --EEEEeC
Q 010883          347 --IKLWDI  352 (498)
Q Consensus       347 --i~iwd~  352 (498)
                        |.++|+
T Consensus       391 ~~l~~~dl  398 (751)
T 2xe4_A          391 TRIWTMMA  398 (751)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence              555564

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.66  E-value=1.5e-06  Score=75.47  Aligned_cols=179  Identities=11%  Similarity=0.019  Sum_probs=121.6

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EECCCeEEEEECCCCcee
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s~d~~i~iwd~~~~~~~  211 (498)
                      -...+.|+ ++.++++.+.+|.|+++|+.+++.+... .. ... --..+++  +++.|.. .-.++.+.+||..+.+..
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~-FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNI-FAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTC-CEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCc-ceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence            34678887 4667777788899999999999777666 32 211 1122444  3444444 445889999999998877


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEEeC
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGD  286 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~  286 (498)
                      ..+....                 .-..++  +|++.|+.+..++.|.++|..+.+.+.++....     ..++.+.|. 
T Consensus       130 ~ti~~~~-----------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-  189 (268)
T 3nok_A          130 RTTRYSG-----------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-  189 (268)
T ss_dssp             EEEECSS-----------------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             EEEeCCC-----------------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence            6655321                 111223  567888888778999999999999888776322     245778885 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-------------cccEEEEEEcCCCCEEEEEe
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~s~~  342 (498)
                       ++.+++..-.+..|.+.|..    +++.+..+...             ..-.+.|+++|+++.|++.+
T Consensus       190 -dG~lyanvw~s~~I~vIDp~----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          190 -NGVIYANIWHSSDVLEIDPA----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             -TTEEEEEETTCSEEEEECTT----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             -CCEEEEEECCCCeEEEEeCC----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence             56666555568899999998    67666655422             13568999999776655554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=5.5e-05  Score=78.76  Aligned_cols=292  Identities=10%  Similarity=0.052  Sum_probs=164.7

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-------e----cCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI-------L----AKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~-------~----~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      ...|.++...++|.+.+ |+..+-|.+++..++.......       .    ..-....|.++...++|. |..|+.++-
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            45799999998887544 5564568889987753211110       0    011234699999988886 455666667


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE---eccC
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHT  276 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~~  276 (498)
                      |..++..++.............       ...-....|.++...++|. |..|+.++-|..||..++......   ....
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~  406 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMN-------ESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLS  406 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCC-------SSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred             EEEeCCCCCcceeeccCccccc-------cCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence            8888877654432211100000       0000123699999988887 667776666999998765432111   1223


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec---cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      ..|.++... .++.+ ..|+.++-+..+|..    .++ ...+.   .....|.++...+++.+.+ |+. +-|.+||..
T Consensus       407 ~~v~~i~~d-~~g~l-Wigt~~~Gl~~~~~~----~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~  477 (781)
T 3v9f_A          407 NSVLCSLKD-SEGNL-WFGTYLGNISYYNTR----LKK-FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLA  477 (781)
T ss_dssp             SBEEEEEEC-TTSCE-EEEETTEEEEEECSS----SCE-EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESS
T ss_pred             cceEEEEEC-CCCCE-EEEeccCCEEEEcCC----CCc-EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCC
Confidence            568888874 55654 457776778889875    332 22222   1346789998888876544 445 458889877


Q ss_pred             CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-eEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883          354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY  432 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  432 (498)
                      +.......                                ....... ...+.    +....++|.+. .|+.++-|..|
T Consensus       478 ~~~~~~~~--------------------------------~~~~~~~~~~~i~----~i~~d~~g~lW-igt~~~Gl~~~  520 (781)
T 3v9f_A          478 SKKVIHHY--------------------------------DTSNSQLLENFVR----SIAQDSEGRFW-IGTFGGGVGIY  520 (781)
T ss_dssp             SSSCCEEE--------------------------------CTTTSSCSCSCEE----EEEECTTCCEE-EEESSSCEEEE
T ss_pred             CCeEEecc--------------------------------cCcccccccceeE----EEEEcCCCCEE-EEEcCCCEEEE
Confidence            53211000                                0000000 00111    11233466644 45554448889


Q ss_pred             ECCCCcEEEEecc---CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          433 DLVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       433 d~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      |..+++...-...   ....|.++...++|.+.+++ .+|.|..||....
T Consensus       521 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~  569 (781)
T 3v9f_A          521 TPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF  569 (781)
T ss_dssp             CTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred             eCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence            9876654332211   23568899998888866554 4676588886544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=0.00038  Score=72.42  Aligned_cols=290  Identities=12%  Similarity=0.075  Sum_probs=162.9

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec----CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      ...|.++...++|.+.+. +.+ -|.+||..++.........    ......|.++...++|.+. .|+..+-|.+++..
T Consensus       210 ~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~  286 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQ  286 (781)
T ss_dssp             CSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETT
T ss_pred             CCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCC
Confidence            356999999999986664 445 5889998776322111100    0123469999998888754 45554568889987


Q ss_pred             CCceecccc--ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe---------cc
Q 010883          207 SGTMESLAN--VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---------AH  275 (498)
Q Consensus       207 ~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---------~~  275 (498)
                      ++.......  ......    ......-....|.++...++|. |..|+.++-|..++...........         ..
T Consensus       287 ~~~~~~~~~~~f~~~~~----~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIRE----GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS  361 (781)
T ss_dssp             CC---------CEEECB----CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred             CCeeeeeeccccccccC----CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence            765432221  000000    0000011233699999999887 7777767779999987654322110         02


Q ss_pred             CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883          276 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWD  351 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  351 (498)
                      ...|.++... .++. |..|+.++-|..||..    .. ....+    ......|.++...+++.+.+ |+.++-|..+|
T Consensus       362 ~~~v~~i~~d-~~g~-lWigt~~~Gl~~~~~~----~~-~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~  433 (781)
T 3v9f_A          362 NKVVSSVCDD-GQGK-LWIGTDGGGINVFENG----KR-VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN  433 (781)
T ss_dssp             SSCEEEEEEC-TTSC-EEEEEBSSCEEEEETT----EE-EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred             CcceEEEEEc-CCCC-EEEEeCCCcEEEEECC----CC-eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence            3468888874 5555 4566766678888874    11 11111    12345789998888887555 66666788888


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY  430 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  430 (498)
                      ..+..                                   +..+... .....+.    +....++|. |..|+. +-|.
T Consensus       434 ~~~~~-----------------------------------~~~~~~~~~~~~~v~----~i~~d~~g~-lwigt~-~Gl~  472 (781)
T 3v9f_A          434 TRLKK-----------------------------------FQIIELEKNELLDVR----VFYEDKNKK-IWIGTH-AGVF  472 (781)
T ss_dssp             SSSCE-----------------------------------EEECCSTTTCCCCEE----EEEECTTSE-EEEEET-TEEE
T ss_pred             CCCCc-----------------------------------EEEeccCCCCCCeEE----EEEECCCCC-EEEEEC-CceE
Confidence            76521                                   1111100 0001111    112233555 444555 5599


Q ss_pred             EEECCCCcEEEEeccC-----CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          431 VYDLVSGEQVAALKYH-----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       431 iwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      .||..+++........     ...|.++...++|.+.+....+| |..|+...
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~  524 (781)
T 3v9f_A          473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM  524 (781)
T ss_dssp             EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred             EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence            9998876543322211     35789999998888655443344 66777654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=2.7e-05  Score=80.42  Aligned_cols=156  Identities=8%  Similarity=0.017  Sum_probs=93.5

Q ss_pred             eEEEEEeC-CCCCeEEEEEC-CC----eEEEEECCCC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          178 TVTDTSLS-PDQRHLVYASM-SP----IVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       178 ~v~~~~~s-p~~~~l~~~s~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.... .+.                 .....++|+|||+.|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~-----------------~~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS-----------------GTNGEIVWGPDHTSLF  236 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE-----------------EECSCCEECSSTTEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc-----------------CceeeEEEecCCCEEE
Confidence            68889999 99999987654 22    5999999988 52110 000                 0234678999999888


Q ss_pred             EEeCC-----CeEEEEECCCCeee--EEEe-ccCCCeeEEEEeCCCCCEEEEeeC---CCeEEEEcCccccCCCce-eEE
Q 010883          251 AGSSD-----DCIYVYDLEANKLS--LRIL-AHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKP-AGV  318 (498)
Q Consensus       251 ~g~~d-----g~i~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~-~~~  318 (498)
                      ....+     ..|+++++.++...  ..+. ........+.|+ +++++|+..+.   ...|.++|+...  .... +..
T Consensus       237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~--~~~~~~~~  313 (751)
T 2xe4_A          237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKG--NAHNTLEI  313 (751)
T ss_dssp             EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSC--TTCCCEEE
T ss_pred             EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCC--CCCceeEE
Confidence            77664     36888999876422  2222 233446678898 77887776553   346888888622  1122 133


Q ss_pred             e-ccccccEEEEEEcCCCCEEEEEeCC--C--cEEEEeCCC
Q 010883          319 L-MGHLEGITFIDSRGDGRYLISNGKD--Q--AIKLWDIRK  354 (498)
Q Consensus       319 ~-~~~~~~v~~l~~~~~~~~l~s~~~d--g--~i~iwd~~~  354 (498)
                      + .........+.|+.++.+++....+  +  .|..+|+.+
T Consensus       314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            3 2334455556655444444444333  2  466666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.53  E-value=0.00038  Score=64.61  Aligned_cols=197  Identities=10%  Similarity=0.073  Sum_probs=120.6

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCc
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT  209 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~  209 (498)
                      ....+|.+..+++ +|+.+ ....|+..++..... ....  .... .+..++|.+....|..+. ..+.|..++..++.
T Consensus        33 ~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~-~~~~--~~~~-~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEY-TLLL--NNLE-NAIALDFHHRRELVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCE-EEEE--CSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCcccccccCc-eeEee-cccceEEEeCCCCee-EEee--cCCC-ceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence            3445677777744 44444 344688888876532 2222  2222 478999998766666554 56789999988765


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  288 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  288 (498)
                      ........                ......+++.+.+..| ++-...+.|.+.++........+.........+++.|.+
T Consensus       107 ~~~~~~~~----------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~  170 (349)
T 3v64_C          107 VEEVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME  170 (349)
T ss_dssp             CEEEECSS----------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT
T ss_pred             ceEEEeCC----------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc
Confidence            33221110                0134678888755444 454556789999987654333333344567899998555


Q ss_pred             CCEEEEeeCC-CeEEEEcCccccCCCceeEEec-cccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883          289 GHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK  354 (498)
Q Consensus       289 ~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  354 (498)
                      +.++++-... +.|..+++.     +.....+. ........|+++|++..|+.+ ...+.|..+|+..
T Consensus       171 g~ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          171 GTIYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             TEEEEEECSSSCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CeEEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            6555555555 788888874     33333332 233457899999876666554 4557799998764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.53  E-value=2.9e-06  Score=86.34  Aligned_cols=244  Identities=9%  Similarity=0.035  Sum_probs=134.4

Q ss_pred             EEEeCC-CCCeEEEEECCC-----------eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883          181 DTSLSP-DQRHLVYASMSP-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  248 (498)
Q Consensus       181 ~~~~sp-~~~~l~~~s~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~  248 (498)
                      .+++.| ++++++.|+.+.           .+.+||..+++..........             +.....++++..++++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-------------~~~~~~~~~~~~~g~l  256 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-------------HDMFCPGISMDGNGQI  256 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-------------CCCSSCEEEECTTSCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-------------CCCccccccCCCCCCE
Confidence            456667 888888887543           688999988876544332221             1112345677889999


Q ss_pred             EEEEeC-CCeEEEEECCCCeeeEEEeccCCC-eeEEEEeCCCCCEEEEee-CC-----CeEEEEcCccccCCCceeEEe-
Q 010883          249 LVAGSS-DDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGS-DD-----NLCKVWDRRCLNVKGKPAGVL-  319 (498)
Q Consensus       249 l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~s-~d-----g~i~vwd~~~~~~~~~~~~~~-  319 (498)
                      +++|+. +..+.+||..+++....-..+... -.+++.. +++++++.|+ .+     ..+.+||..    .......- 
T Consensus       257 yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~----t~~W~~~~~  331 (656)
T 1k3i_A          257 VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS----SKTWTSLPN  331 (656)
T ss_dssp             EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT----TTEEEEETT
T ss_pred             EEeCCCCCCceEEecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCC----CCcceeCCC
Confidence            999884 457999999887654321111111 2334443 5788999988 44     468999986    32221110 


Q ss_pred             ---ccccccEEEEEEcCCCCEEEEEeCCC---------cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883          320 ---MGHLEGITFIDSRGDGRYLISNGKDQ---------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP  387 (498)
Q Consensus       320 ---~~~~~~v~~l~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (498)
                         ......-....+..++..++.++.+|         .+..||..+...                              
T Consensus       332 ~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w------------------------------  381 (656)
T 1k3i_A          332 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD------------------------------  381 (656)
T ss_dssp             SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE------------------------------
T ss_pred             ccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce------------------------------
Confidence               00000000011234555556665554         355666654210                              


Q ss_pred             CCceEEEEccCce-------eEEEEEEEeccccCCCCcEEEEEecCC-----------eEEEEECCCCcEEEEe--ccCC
Q 010883          388 CDQSVATYKGHSV-------LRTLIRCHFSPVYSTGQKYIYTGSHDS-----------CVYVYDLVSGEQVAAL--KYHT  447 (498)
Q Consensus       388 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~l~~g~~dg-----------~i~iwd~~~~~~~~~~--~~h~  447 (498)
                          .........       ......+.+..   .++++++.|+.++           .|.+||..+..-....  ..+.
T Consensus       382 ----~~~~~~~~~~~~~~~~~~~~~av~~~~---~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~  454 (656)
T 1k3i_A          382 ----VKSAGKRQSNRGVAPDAMCGNAVMYDA---VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF  454 (656)
T ss_dssp             ----EEEEEECEETTEECCCCBTCEEEEEET---TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred             ----eecCCccccccccCCCCCCCceEeccC---CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence                000000000       00001111111   2688888887543           6888998777654433  2222


Q ss_pred             CCe-eeeEEcCCCCeEEEEeCC-----------CcEEEecCCCC
Q 010883          448 SPV-RDCSWHPSQPMLVSSSWD-----------GDVVRWEFPGN  479 (498)
Q Consensus       448 ~~v-~~l~~sp~~~~l~s~~~D-----------g~i~iw~~~~~  479 (498)
                      ... .+++..|++++++.|+.+           ..+.+||....
T Consensus       455 ~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          455 ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence            333 344667899999999865           45788887554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=5.4e-05  Score=72.47  Aligned_cols=154  Identities=10%  Similarity=0.106  Sum_probs=97.4

Q ss_pred             eEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-
Q 010883          178 TVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-  255 (498)
Q Consensus       178 ~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-  255 (498)
                      ....++++| ++..|.++...+.|+.+|..++....+...                 ......++|+++|++|+++... 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-----------------~~~P~~ia~d~~G~~lyvad~~~  200 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-----------------LSKVRTICWTHEADSMIITNDQN  200 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-----------------CSCEEEEEECTTSSEEEEEECCS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-----------------CCCcceEEEeCCCCEEEEEeCCC
Confidence            467889998 466666666558899999987765433221                 1157899999999966666542 


Q ss_pred             C----eEEEEECCCCeee--EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEE
Q 010883          256 D----CIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF  328 (498)
Q Consensus       256 g----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~  328 (498)
                      +    .+.+++.. +...  ..+. .......+++.|.++.++++-..++.|..++..    ......... ........
T Consensus       201 ~~~~~~v~~~~~~-g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~----~~~~~~~~~~~~~~~P~g  274 (430)
T 3tc9_A          201 NNDRPNNYILTRE-SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT----TQETTPLFTIQDSGWEFH  274 (430)
T ss_dssp             CTTSEEEEEEEGG-GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT----TTEEEEEEECSSSSCCEE
T ss_pred             CcccceEEEEeCC-Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEEcCCCCccee
Confidence            1    34444432 3221  2222 234567788874477777777778899999985    332211111 11234678


Q ss_pred             EEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 010883          329 IDSRGDGRYLI-SNGKDQAIKLWDIRK  354 (498)
Q Consensus       329 l~~~~~~~~l~-s~~~dg~i~iwd~~~  354 (498)
                      ++|+|++++|+ +-...+.|..++...
T Consensus       275 ia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          275 IQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            99999999554 445667899988653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=3.7e-05  Score=73.67  Aligned_cols=154  Identities=10%  Similarity=0.066  Sum_probs=95.2

Q ss_pred             ceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-C----eEEEEECC
Q 010883          133 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P----IVHIVDVG  206 (498)
Q Consensus       133 ~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~----~i~iwd~~  206 (498)
                      ....++++| ++..|.++...+.|+.+|+.++. +.....   .......++|++++++|+++... +    .+.+++. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence            446789998 45556655555889999998763 222222   22358899999999977666542 1    2333333 


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEE
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCF  284 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~  284 (498)
                      .+.......+..               ......++++| +|.++++-..++.|+.++...+....... ........++|
T Consensus       213 ~g~~~~~~~l~~---------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~  277 (430)
T 3tc9_A          213 ESGFKVITELTK---------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF  277 (430)
T ss_dssp             GGTSCSEEEEEE---------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred             CCceeeeeeecc---------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence            222211101100               01356788999 67766666677899999998776522222 22245688999


Q ss_pred             eCCCCC-EEEEeeCCCeEEEEcCc
Q 010883          285 GDESGH-LIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       285 ~~~~~~-~l~s~s~dg~i~vwd~~  307 (498)
                      + ++++ ++++-...+.|..++..
T Consensus       278 ~-pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          278 H-PSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             C-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             c-CCCCEEEEEECCCCEEEEEeCC
Confidence            7 7777 55555567889998865

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.45  E-value=0.00092  Score=61.37  Aligned_cols=279  Identities=12%  Similarity=0.104  Sum_probs=144.7

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      ...+.++.|.+++..+|+| .+|.| +...+.|+........ ......+.++.|.| +..++ ++..+.|.. ..+.++
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence            3479999999888888854 66755 3444444322222111 12234688999976 44444 455664443 333343


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCCCeeEEEEeCCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES  288 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~  288 (498)
                      .-.......             .+...+..+.+.+++..++++ .+|.|+.- ...++.-. ........+..+.+. ++
T Consensus       110 tW~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~-~~  173 (327)
T 2xbg_A          110 SWSQIPLDP-------------KLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRS-PS  173 (327)
T ss_dssp             SCEECCCCT-------------TCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEEC-TT
T ss_pred             CceECcccc-------------CCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEc-CC
Confidence            211111100             011246677777777655555 45654332 22233222 223455678899997 56


Q ss_pred             CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883          289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY  368 (498)
Q Consensus       289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  368 (498)
                      +.+++.+...+..+-+|-.  ......+.  ......+..+.+.+++..++ ++.+|.+++.+......           
T Consensus       174 ~~~~~~g~~G~~~~S~d~g--G~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t-----------  237 (327)
T 2xbg_A          174 GEYVAVSSRGSFYSTWEPG--QTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN-----------  237 (327)
T ss_dssp             SCEEEEETTSSEEEEECTT--CSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE-----------
T ss_pred             CcEEEEECCCcEEEEeCCC--CCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe-----------
Confidence            7777666544444444421  01222321  23456788899999887654 45677777664221000           


Q ss_pred             cccceeecCCcCcccccCCCCceEEEEccC--ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--
Q 010883          369 EWDYRWMDYPPQARDLKHPCDQSVATYKGH--SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--  444 (498)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--  444 (498)
                       |                      ......  .....+..+    .+.+++.+++++ .+|.| ++....|+.-..+.  
T Consensus       238 -W----------------------~~~~~~~~~~~~~~~~v----~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~  288 (327)
T 2xbg_A          238 -W----------------------GELLSPLRRNSVGFLDL----AYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV  288 (327)
T ss_dssp             -E----------------------CCCBCTTSSCCSCEEEE----EESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG
T ss_pred             -e----------------------EeccCCcccCCcceEEE----EecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc
Confidence             0                      000000  000011112    234466666655 46766 44455565444443  


Q ss_pred             -cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          445 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       445 -~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                       .+...+.++.|.+++ .++.++.+|.|..++-
T Consensus       289 ~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          289 KKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             TTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             CCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence             234568889997555 4667778998776653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.44  E-value=0.00057  Score=64.41  Aligned_cols=195  Identities=10%  Similarity=0.069  Sum_probs=117.1

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCcee
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTME  211 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~  211 (498)
                      .-.|.+..+++ +|+.+ ....|+..++..+.. ....  .... .+..++|.+.+..|..+. ..+.|..++..++...
T Consensus        78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~-~~~~--~~~~-~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEY-TLLL--NNLE-NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE  151 (386)
T ss_dssp             SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCC-EEEE--CSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred             CCeECCccccc-eeEee-cCccceeeccCCCcE-EEEe--cCCC-ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence            34466666643 44444 345688888876532 2221  2222 578999998666665554 5678999998876533


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                      ......                ......+++.+.+..| ++-...+.|.+.++........+.........+++.|.++.
T Consensus       152 ~~~~~~----------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          152 EVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             EEECSS----------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEEeCC----------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence            222110                0034567888755444 44455678999888755433333334456789999755555


Q ss_pred             EEEEeeCC-CeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883          291 LIYSGSDD-NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK  354 (498)
Q Consensus       291 ~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  354 (498)
                      ++++-... +.|..+++.     +.....+ .........|+++|++..|+.+ ...+.|..+|+..
T Consensus       216 ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEECSSSCEEEEEETT-----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             EEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            55554445 788888875     2222222 2234457899999876665544 4557788888764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.42  E-value=0.001  Score=60.70  Aligned_cols=184  Identities=10%  Similarity=0.014  Sum_probs=109.8

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCC----ceecccccccc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEI  219 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~----~~~~~~~~~~~  219 (498)
                      +|+.+. ...|+..++.+...... .  .. ...+..++|++++..|..+. ..+.|..+++.+.    .......  . 
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~-~--~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~-   74 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSL-I--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R-   74 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEE-E--CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--S-
T ss_pred             EEEEEC-CCeEEEEECCCcceEeh-h--cC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--C-
Confidence            344443 35689999987643322 1  11 22578999998766665554 4688999998762    1111110  0 


Q ss_pred             ccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC
Q 010883          220 HDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD  298 (498)
Q Consensus       220 ~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  298 (498)
                        +           -.....+++.+.+..| ++-...+.|.++++........+.........+++.|.++.++++....
T Consensus        75 --~-----------~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~  141 (316)
T 1ijq_A           75 --D-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  141 (316)
T ss_dssp             --S-----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             --C-----------CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence              0           0135678888755545 4445678999999876544333333445678999974455555544333


Q ss_pred             -CeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 010883          299 -NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK  354 (498)
Q Consensus       299 -g~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~  354 (498)
                       +.|...++.     +.....+ .........+++++++..|+.+. ..+.|..+|+..
T Consensus       142 ~~~I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          142 PAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             SCEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCeEEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence             688888874     3333332 22345678999998776665554 556899999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.40  E-value=0.00059  Score=63.29  Aligned_cols=199  Identities=9%  Similarity=-0.038  Sum_probs=117.2

Q ss_pred             cEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883          236 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK  314 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  314 (498)
                      .+..++|++.+..|+.. ...+.|+.+++........+.........+++.+.+++++++-...+.|.+.++.    ...
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----G~~  149 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAH  149 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SCS
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC----CCc
Confidence            47889999765555544 4678899999987654443333334567888864456666666677899999985    222


Q ss_pred             eeEEeccccccEEEEEEcCCCCEEEEE-eCC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883          315 PAGVLMGHLEGITFIDSRGDGRYLISN-GKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV  392 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (498)
                      ....+.........++++|.+..|+.. ... +.|..+++.....                                   
T Consensus       150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----------------------------------  194 (349)
T 3v64_C          150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----------------------------------  194 (349)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----------------------------------
T ss_pred             eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-----------------------------------
Confidence            222233334567899999866555444 344 6788887764211                                   


Q ss_pred             EEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883          393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV  471 (498)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i  471 (498)
                      ..+-. ......    ..++++|++..|+.+. ..+.|..+|+........+.........+++ ..+.++++-...+.|
T Consensus       195 ~~~~~-~~~~~P----nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V  268 (349)
T 3v64_C          195 RIIAD-THLFWP----NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSI  268 (349)
T ss_dssp             EESCC-SSCSCE----EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred             EEEEE-CCCCCc----ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeE
Confidence            01100 000111    1234555555555554 4678999998654433333333445677888 344455555566778


Q ss_pred             EEecCCCC
Q 010883          472 VRWEFPGN  479 (498)
Q Consensus       472 ~iw~~~~~  479 (498)
                      ...+..++
T Consensus       269 ~~~~~~~G  276 (349)
T 3v64_C          269 NSANKFTG  276 (349)
T ss_dssp             EEEETTTC
T ss_pred             EEEEccCC
Confidence            77774443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.39  E-value=0.00018  Score=68.93  Aligned_cols=155  Identities=13%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             eEEEEEeCCC--CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883          178 TVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD  255 (498)
Q Consensus       178 ~v~~~~~sp~--~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d  255 (498)
                      ....++|+|+  ...|..+...+.|+.++..++........                 ......++|+++|+ |+++...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~-----------------~~~P~giavd~dG~-lyVad~~  201 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN-----------------IGQCADVNFTLNGD-MVVVDDQ  201 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC-----------------CSCEEEEEECTTCC-EEEEECC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC-----------------CCCccEEEECCCCC-EEEEcCC
Confidence            4678999995  44455554448899999987776544321                 11578999999999 5554432


Q ss_pred             C-----eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-c-cccccEEE
Q 010883          256 D-----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M-GHLEGITF  328 (498)
Q Consensus       256 g-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~-~~~~~v~~  328 (498)
                      +     .+...+...+...............+++.+.++.++++-..++.|+.+|..    .+.....+ . +....-..
T Consensus       202 ~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~----~g~~~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          202 SSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA----TGTLTEEEVMMDTKGSNFH  277 (433)
T ss_dssp             SCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTT----TCCEEEEEEECSCCSSCEE
T ss_pred             CCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC----CCeEEEEEeccCCCCCccc
Confidence            1     233343322211111112234557788874377777776678899999985    34331222 1 11222346


Q ss_pred             EEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 010883          329 IDSRGDGRYLI-SNGKDQAIKLWDIRK  354 (498)
Q Consensus       329 l~~~~~~~~l~-s~~~dg~i~iwd~~~  354 (498)
                      ++++|+++.|+ +-...+.|+.+++..
T Consensus       278 ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            99999999555 444567899988753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.38  E-value=0.00024  Score=66.97  Aligned_cols=227  Identities=10%  Similarity=-0.029  Sum_probs=131.2

Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCee
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKL  268 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~  268 (498)
                      +|+.+ ....|+.+++.+..........                 ..+..++|.+.+..|+ +-...+.|+.+++.....
T Consensus        89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~-----------------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  150 (386)
T 3v65_B           89 VLLFA-NRIDIRQVLPHRSEYTLLLNNL-----------------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  150 (386)
T ss_dssp             EEEEE-CBSCEEEECTTSCCCEEEECSC-----------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred             eeEee-cCccceeeccCCCcEEEEecCC-----------------CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence            44443 3456888888765443222110                 1578899997555555 444678899999987654


Q ss_pred             eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CC-Cc
Q 010883          269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD-QA  346 (498)
Q Consensus       269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d-g~  346 (498)
                      ...+.........+++.+..+.++++-...+.|.+.++.    .......+.........++++|.+..|+... .. +.
T Consensus       151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d----g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~  226 (386)
T 3v65_B          151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR  226 (386)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT----SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC----CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence            443333334557788864456666666677889998875    2222222333345678999998766655444 33 56


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE-ec
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SH  425 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~  425 (498)
                      |..+++....                                   ...+... .....    ..++++|++..|+.+ +.
T Consensus       227 I~r~~~dG~~-----------------------------------~~~~~~~-~~~~P----nGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          227 IEASSMDGSG-----------------------------------RRIIADT-HLFWP----NGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EEEEETTSCS-----------------------------------CEEEECS-SCSCE----EEEEEEGGGTEEEEEETT
T ss_pred             EEEEeCCCCC-----------------------------------cEEEEEC-CCCCe----eeEEEeCCCCEEEEEECC
Confidence            7777765421                                   1111000 00111    123455455555555 44


Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .+.|..+|+........+.........+++ ..+.++++-...+.|..++..++
T Consensus       267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            678999998654443334333445677888 34455666666778888874444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.37  E-value=0.00031  Score=61.32  Aligned_cols=204  Identities=13%  Similarity=0.118  Sum_probs=123.0

Q ss_pred             cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883          236 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG  313 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  313 (498)
                      .+..++|+|++..|+ +...++.|...|.. ++.+.++. .-......|++. .++.++++.-.++.+.++++.... ..
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~-~i  104 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNS-EV  104 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTC-CE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCC-ee
Confidence            699999999766554 57778899999998 77777764 223578889996 667676666677889998875221 00


Q ss_pred             ceeEEec------cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883          314 KPAGVLM------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP  387 (498)
Q Consensus       314 ~~~~~~~------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (498)
                      ..+....      ........++|+|+++.|+++.......+|.++........                          
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l--------------------------  158 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL--------------------------  158 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC--------------------------
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce--------------------------
Confidence            1111111      23445689999999987777776655566665421000000                          


Q ss_pred             CCceEEE--EccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC---------CCeeeeEEc
Q 010883          388 CDQSVAT--YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRDCSWH  456 (498)
Q Consensus       388 ~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~s  456 (498)
                        ..+..  +.............+.|.   .+++++.......|.++|.. ++.+..+.-..         ..--.++|.
T Consensus       159 --~i~~~~~~~~~~~~~d~S~l~~dp~---tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d  232 (255)
T 3qqz_A          159 --HISKDKALQRQFTLDDVSGAEFNQQ---KNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMD  232 (255)
T ss_dssp             --EEEECHHHHHTCCSSCCCEEEEETT---TTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEEC
T ss_pred             --eeecchhhccccccCCceeEEEcCC---CCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEEC
Confidence              00000  000000111223334443   56777777778899999965 55665554221         245789999


Q ss_pred             CCCCeEEEEeCCCcEEEec
Q 010883          457 PSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       457 p~~~~l~s~~~Dg~i~iw~  475 (498)
                      ++|++.++ +.-+.++++.
T Consensus       233 ~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          233 ASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             TTCCEEEE-ETTTEEEEEE
T ss_pred             CCCCEEEE-cCCceEEEEE
Confidence            99985555 5666555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.33  E-value=0.0017  Score=59.22  Aligned_cols=228  Identities=9%  Similarity=-0.002  Sum_probs=127.8

Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCC---
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEA---  265 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~---  265 (498)
                      +|+.+. ...|+..++.+.+.......                 -..+..++|++++..|+.. ..++.|..+++..   
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~-----------------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~   64 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG   64 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECS-----------------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcC-----------------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC
Confidence            344444 35688889887654332211                 0157889999866555544 4568999999876   


Q ss_pred             -CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883          266 -NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       266 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                       ......+...-.....+++.+.+++++++-...+.|.++++.    .......+.........++++|.+..|+.+...
T Consensus        65 ~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~  140 (316)
T 1ijq_A           65 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  140 (316)
T ss_dssp             ---CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC----CCceEEEEECCCCCcceEEeCCCCCEEEEEccC
Confidence             222222222224567888864455666666678899999985    222222222234567899999866655544432


Q ss_pred             --CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          345 --QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       345 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                        +.|...++...                                   ....+... .....    ..+++++++..|+.
T Consensus       141 ~~~~I~~~~~dG~-----------------------------------~~~~~~~~-~~~~P----~gla~d~~~~~lY~  180 (316)
T 1ijq_A          141 TPAKIKKGGLNGV-----------------------------------DIYSLVTE-NIQWP----NGITLDLLSGRLYW  180 (316)
T ss_dssp             SSCEEEEEETTSC-----------------------------------CEEEEECS-SCSCE----EEEEEETTTTEEEE
T ss_pred             CCCeEEEEcCCCC-----------------------------------CeEEEEEC-CCCCc----eEEEEeccCCEEEE
Confidence              57777776531                                   11111100 01111    22245556666655


Q ss_pred             Ee-cCCeEEEEECCCCcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          423 GS-HDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       423 g~-~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      +. ..+.|..+|+..........  ........+++. .+.++++-...+.|..++..++.
T Consensus       181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            54 46789999986433222222  122345678885 35555666567788888865443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.32  E-value=0.00012  Score=70.10  Aligned_cols=198  Identities=10%  Similarity=0.035  Sum_probs=111.7

Q ss_pred             ceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC----e-EEEEEC
Q 010883          133 RAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----I-VHIVDV  205 (498)
Q Consensus       133 ~v~~~~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~----~-i~iwd~  205 (498)
                      .-..++|+|+  +..|..+...+.|+.++..++... ....   .......++|+++++ |..+...+    . +...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-Eeec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence            4568999995  334444444488999999877432 2221   223588999999999 55444322    1 222222


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEec--cCCCeeEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTV  282 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~  282 (498)
                      ..+ ........               .-.....++++| +|.++++-..++.|+.+|..++.....+..  ....-..+
T Consensus       215 ~~~-~~~~~~~~---------------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i  278 (433)
T 4hw6_A          215 ASG-FTERLSLC---------------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI  278 (433)
T ss_dssp             GGT-TCCEEEEE---------------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred             CCC-eecccccc---------------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence            111 10000000               001345688999 676555555678899999987765333322  12223469


Q ss_pred             EEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEEecc---------------ccccEEEEEE---------cCCCCE
Q 010883          283 CFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------------HLEGITFIDS---------RGDGRY  337 (498)
Q Consensus       283 ~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------------~~~~v~~l~~---------~~~~~~  337 (498)
                      +|+ ++++ ++++-...+.|+.++.............+.+               .-.....+++         .+++.+
T Consensus       279 a~d-pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l  357 (433)
T 4hw6_A          279 VWH-PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF  357 (433)
T ss_dssp             EEC-TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             EEe-CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence            997 6777 4555556788999876411000000111111               1123567888         677777


Q ss_pred             EEEEeCCCcEEEEeC
Q 010883          338 LISNGKDQAIKLWDI  352 (498)
Q Consensus       338 l~s~~~dg~i~iwd~  352 (498)
                      +++-...+.|+.++.
T Consensus       358 yvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          358 YFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEETTTTEEEEECT
T ss_pred             EEEECCCCEEEEECC
Confidence            777667778888874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.30  E-value=0.0027  Score=60.05  Aligned_cols=185  Identities=10%  Similarity=-0.004  Sum_probs=111.8

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCc----eeccccccc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT----MESLANVTE  218 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~----~~~~~~~~~  218 (498)
                      .+|+.+. ...|+..++........ .  .. ...+..++|++.+..|..+. ..+.|+.+++....    ......   
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~-~--~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---  155 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSL-I--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---  155 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEE-E--CS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---
T ss_pred             ceeEEec-cceeEEEccCCcceeEe-c--cc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---
Confidence            3455443 46788889886532221 1  12 23688999999766666554 46788888886532    111110   


Q ss_pred             cccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC
Q 010883          219 IHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD  297 (498)
Q Consensus       219 ~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  297 (498)
                                   ........+++.+. ++++++-...+.|.+.++........+.........|++.|..+.++++-..
T Consensus       156 -------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~  222 (400)
T 3p5b_L          156 -------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  222 (400)
T ss_dssp             -------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred             -------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence                         00114678899884 4444455567889999987665444444444567899997445544444323


Q ss_pred             -CCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 010883          298 -DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK  354 (498)
Q Consensus       298 -dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~  354 (498)
                       .+.|...++.     +.....+ .........|++++++..|+.+. ..+.|..+|+..
T Consensus       223 ~~~~I~~~~~d-----G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          223 TPAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             SSCCEEEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCEEEEEeCC-----CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence             3788888874     3322222 23335678999998777666554 456799998864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.30  E-value=0.0017  Score=60.12  Aligned_cols=267  Identities=10%  Similarity=0.157  Sum_probs=164.8

Q ss_pred             CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCC
Q 010883          152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG  231 (498)
Q Consensus       152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (498)
                      +..|.|-|+.++..+.+...  .    --+.-.+|..+.||.-. ..++.|+|+++........+.+             
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi--~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-------------  106 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI--S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-------------  106 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC--C----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred             CCeEEEEECCCCCcceeccc--c----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence            34788999987644322211  1    12345789998888765 6799999999987766655543             


Q ss_pred             CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccC----CCeeEEEEeCCCCCEEEEee-------CCC
Q 010883          232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT----SDVNTVCFGDESGHLIYSGS-------DDN  299 (498)
Q Consensus       232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~s-------~dg  299 (498)
                          .|.--.|-.+. .|+..+ +..|+-|++... .++..+..|.    ..|.....+ ++.++++..+       -.|
T Consensus       107 ----~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G  179 (494)
T 1bpo_A          107 ----DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG  179 (494)
T ss_dssp             ----CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSSEEEEEEEEEETTEEEE
T ss_pred             ----CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC-CCCCeEEEEeecccCCcccc
Confidence                45556676444 455554 457999999753 3445554443    345555554 6667666443       247


Q ss_pred             eEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---CEEEEEeCC---CcEEEEeCCCCC-CccccccCcccccccc
Q 010883          300 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD---QAIKLWDIRKMS-SNASCNLGFRSYEWDY  372 (498)
Q Consensus       300 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~d---g~i~iwd~~~~~-~~~~~~~~~~~~~~~~  372 (498)
                      .+.+|..     ..+.-..+.+|......+....+.   ..++.+...   +.+.|.++.... ....+       ....
T Consensus       180 ~mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f-------~kk~  247 (494)
T 1bpo_A          180 AMQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKA  247 (494)
T ss_dssp             EEEEEES-----TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC-------CCEE
T ss_pred             eEEEeec-----cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc-------ccee
Confidence            8899998     456677888887766555554321   234444432   689999886531 11100       0001


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD  452 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  452 (498)
                      ..+.++|+...                  ...+..    ..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..
T Consensus       248 vdv~fppe~~~------------------DFPvam----qvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~  305 (494)
T 1bpo_A          248 VDVFFPPEAQN------------------DFPVAM----QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV  305 (494)
T ss_dssp             EECCCCTTSTT------------------CCEEEE----EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             eeeeCCccccc------------------CceeEE----EecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence            11112221100                  111112    23445667888889999999999999999888777778877


Q ss_pred             eEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          453 CSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       453 l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .+-+....-++.....|.|.--.++..
T Consensus       306 t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          306 TAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             ecccCCCCcEEEEccCceEEEEEEccc
Confidence            777666666777778888777666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.0018  Score=59.07  Aligned_cols=187  Identities=10%  Similarity=0.051  Sum_probs=108.7

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCceeccccccccccCc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGL  223 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (498)
                      +|+.+ ....|+..+++.......... .+ ...+..++|.+.+..|..+ ...+.|..++..++..........     
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~-~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-----   77 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENATIVV-GG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-----   77 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCCEEEE-EE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-----
T ss_pred             EEEEE-ccCeEEEEECCCCceEEEEEe-cC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-----
Confidence            34444 346799999986521111111 11 1257789999865555544 456789999987653211100000     


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCeE
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLC  301 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i  301 (498)
                                -.....+++.+.+..| ++-...+.|.++++........+.........+++.|..+.++++-. ..+.|
T Consensus        78 ----------l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I  147 (318)
T 3sov_A           78 ----------LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI  147 (318)
T ss_dssp             ----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred             ----------CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence                      0135578888744444 45456788999998764433333344456789999744454444432 35788


Q ss_pred             EEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883          302 KVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK  354 (498)
Q Consensus       302 ~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  354 (498)
                      ...++.     +.....+ .......+.|++++++..|+.+ ...+.|..+|+..
T Consensus       148 ~r~~~d-----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          148 ERAGMD-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEcC-----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            888874     2222222 2233456899999976666554 4567899998864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=0.00028  Score=67.78  Aligned_cols=158  Identities=10%  Similarity=0.058  Sum_probs=94.4

Q ss_pred             ceEEEEEcCC-C-CEEEEEECCCeEEEEECCCCeEEEEEeec-CCCceeEEEEEe-------CCCCCeEEEEECCC----
Q 010883          133 RAYVSQFSAD-G-SLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSL-------SPDQRHLVYASMSP----  198 (498)
Q Consensus       133 ~v~~~~~s~d-g-~~la~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~v~~~~~-------sp~~~~l~~~s~d~----  198 (498)
                      .-..|+|+|. . +++++....+.|++.|+.++... .+... .........++|       +++++.|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            4678999993 4 45555444567999999887433 32222 112235899999       99999777776554    


Q ss_pred             ---eEEEEECCC-Cceec-c--ccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECC------
Q 010883          199 ---IVHIVDVGS-GTMES-L--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE------  264 (498)
Q Consensus       199 ---~i~iwd~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~------  264 (498)
                         .|.+++... +.... .  ..+...               .....++++|+ +.++++-..++.|+.+|+.      
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~---------------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~  283 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAY---------------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI  283 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEE---------------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred             cCceEEEEecCCCCceeecccceeeccC---------------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence               255665433 22210 0  001000               03456788994 5555556677889999997      


Q ss_pred             -CCee-----------eEEEe--ccCCCeeEEEEeCCCCCE-EEEeeCCCeEEEEcCc
Q 010883          265 -ANKL-----------SLRIL--AHTSDVNTVCFGDESGHL-IYSGSDDNLCKVWDRR  307 (498)
Q Consensus       265 -~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~~-l~s~s~dg~i~vwd~~  307 (498)
                       ++..           ...+.  +.......|+|+ ++++. +++-+..+.|+.++..
T Consensus       284 ~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          284 KNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCceeecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecC
Confidence             5543           11221  223446789997 77775 4444567788887653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.13  E-value=0.0063  Score=57.48  Aligned_cols=229  Identities=9%  Similarity=-0.004  Sum_probs=130.8

Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC--
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEAN--  266 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~--  266 (498)
                      +|+.+. ...|+..++.......+...                 ...+..++|++.+..|+.. ...+.|+.+++...  
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-----------------~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~  146 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG  146 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECS-----------------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred             eeEEec-cceeEEEccCCcceeEeccc-----------------cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC
Confidence            444443 46788888876654332211                 1157899999865555554 45688999998752  


Q ss_pred             --eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-
Q 010883          267 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-  343 (498)
Q Consensus       267 --~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-  343 (498)
                        .....+.........+++.+..++++++-...+.|.+.++.    .......+.........|++.|.+..|+.... 
T Consensus       147 ~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~----g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~  222 (400)
T 3p5b_L          147 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  222 (400)
T ss_dssp             -CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT----TCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred             CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC----CCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence              22233333445678888864466666666778899999985    22233333333455789999996666554442 


Q ss_pred             -CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          344 -DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       344 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                       .+.|...++.....                                  .......  ....    ..+++++++..|+.
T Consensus       223 ~~~~I~~~~~dG~~~----------------------------------~~~~~~~--l~~P----~glavd~~~~~lY~  262 (400)
T 3p5b_L          223 TPAKIKKGGLNGVDI----------------------------------YSLVTEN--IQWP----NGITLDLLSGRLYW  262 (400)
T ss_dssp             SSCCEEEEETTSCSC----------------------------------EEEECSS--CSCE----EEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCCCCcc----------------------------------EEEEECC--CCce----EEEEEEeCCCEEEE
Confidence             36788877764211                                  0011110  0111    22345556666666


Q ss_pred             Ee-cCCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          423 GS-HDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       423 g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +. ..+.|..+|+........+..  .-.....+++. .+.++++-...+.|..++..++..
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence            54 467899999865443333222  22345577773 334555666678888888555543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.0019  Score=61.99  Aligned_cols=161  Identities=15%  Similarity=0.119  Sum_probs=98.7

Q ss_pred             eEEEEEeCCC-CCeEEEE-ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE-------cCCCCE
Q 010883          178 TVTDTSLSPD-QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-------STDGRE  248 (498)
Q Consensus       178 ~v~~~~~sp~-~~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-------s~~g~~  248 (498)
                      ....|+|.|. ...|.++ ...+.|++.|..++....+......             .......++|       +++|++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-------------~~~~p~~ia~~~~~~~~d~~G~~  206 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-------------PTNRIRSIAFNKKIEGYADEAEY  206 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-------------SCSBEEEEEECCCBTTTBCTTCE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-------------ccCCCcEEEEeecccccCCCCCE
Confidence            4678999983 4444444 4346799999988776554432110             1125889999       999997


Q ss_pred             EEEEeCCC-------eEEEEECCC-Ceee-----EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc-------c
Q 010883          249 LVAGSSDD-------CIYVYDLEA-NKLS-----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR-------C  308 (498)
Q Consensus       249 l~~g~~dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~-------~  308 (498)
                      |+++...+       .|.+++... +...     ..+.. -.....+++.|.++.++++-..++.|..+|+.       .
T Consensus       207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t  285 (496)
T 3kya_A          207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN  285 (496)
T ss_dssp             EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT
T ss_pred             EEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC
Confidence            77776554       366776444 2221     22222 23446778875577777788888999999986       1


Q ss_pred             ccCC----------CceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCC
Q 010883          309 LNVK----------GKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIR  353 (498)
Q Consensus       309 ~~~~----------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~  353 (498)
                      ....          .+.+... +.......|+|+|+|++|+.+ .....|+.++..
T Consensus       286 g~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          286 GGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            2110          0011112 223446789999999965444 456778886654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.12  E-value=0.0099  Score=59.54  Aligned_cols=205  Identities=10%  Similarity=-0.011  Sum_probs=118.1

Q ss_pred             CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCC
Q 010883          131 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSG  208 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~  208 (498)
                      -.....++|++.+..|..+. ..+.|..++++....... ....+ -..+..+++.+.+..|..+ ...+.|.+.++...
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~-v~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-VVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE-EECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE-EEeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            34568999999776666554 467899999875421122 22222 1368899999966655554 45789999998765


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  286 (498)
                      ....+.. ..               -.....|++.|.+..|+....  .+.|...++............-...+.|++.+
T Consensus       117 ~~~~l~~-~~---------------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~  180 (619)
T 3s94_A          117 LRKVLFW-QE---------------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY  180 (619)
T ss_dssp             SCEEEEC-SS---------------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred             CEEEEEe-CC---------------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEc
Confidence            4322221 00               013567899987655655543  46787777765433333323345678999975


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN  358 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  358 (498)
                      .++.++++-...+.|...|+..    ........+.......|++..+ ..+++-...+.|...|..+....
T Consensus       181 ~~~~LY~aD~~~~~I~~~~~dG----~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          181 EEQKLYWADAKLNFIHKSNLDG----TNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             TTTEEEEEETTTCCEEEESSSC----CEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             cCCEEEEEeCCCCeEEEecCCC----CccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            4555555555677899999852    1111111111222345666655 44455556778999998765543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.12  E-value=0.0012  Score=59.32  Aligned_cols=211  Identities=13%  Similarity=0.147  Sum_probs=124.9

Q ss_pred             EEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecC-----CCceeEEEEEe---CCCCCeEEEEE----------
Q 010883          135 YVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSL---SPDQRHLVYAS----------  195 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~~~~---sp~~~~l~~~s----------  195 (498)
                      -+++|++....|..++ ..++|..|+...+..... ....     .....+..+.|   .|+++++++..          
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            4678988666666665 789999999986533322 2211     11225689999   68888777644          


Q ss_pred             ---CCCeEEEEECC---CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCee
Q 010883          196 ---MSPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLEANKL  268 (498)
Q Consensus       196 ---~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-g~i~vwd~~~~~~  268 (498)
                         .+..|..+|+.   +++......+.....+..  ... +.-...+..++..++|+..++++.. +.|...+......
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~--~~~-g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~  171 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFE--KKA-GKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV  171 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHH--HHH-SSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCcccccccc--ccc-cccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence               25779999998   776655444332111000  000 0011258899999999999988888 8888887764422


Q ss_pred             eEEEe-c-----cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-cc---ccccEEE-EEEcCCCCE
Q 010883          269 SLRIL-A-----HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MG---HLEGITF-IDSRGDGRY  337 (498)
Q Consensus       269 ~~~~~-~-----~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~---~~~~v~~-l~~~~~~~~  337 (498)
                       ..+. .     .....+.|++. +++++|++....|.+..+|+...  ....+..- .+   ....... +....+|+.
T Consensus       172 -~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~~p--v~~~v~~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          172 -STFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVSKP--YAWPEPVKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             -EEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECSSS--SCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             -eeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCCCC--cceeecccccCCcccccCcccccccccCCEE
Confidence             2221 1     12236799998 67777777766999999998721  11011111 01   1122333 333346777


Q ss_pred             -EEEEeCCCcEEEEeCC
Q 010883          338 -LISNGKDQAIKLWDIR  353 (498)
Q Consensus       338 -l~s~~~dg~i~iwd~~  353 (498)
                       +++....+.+.+.+..
T Consensus       248 llV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          248 VLVGARAPYAISFRSWD  264 (334)
T ss_dssp             EEEEEETTEEEEEECSS
T ss_pred             EEEEcCCCCEEEEECCC
Confidence             4555556655555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.10  E-value=0.0051  Score=56.03  Aligned_cols=225  Identities=8%  Similarity=-0.021  Sum_probs=128.7

Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeee-EEEec
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLS-LRILA  274 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~-~~~~~  274 (498)
                      ...|+.+++.+...........               ...+..++|.+.+..| ++-...+.|..+++...... ..+..
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~---------------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~   76 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGG---------------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS   76 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEE---------------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred             cCeEEEEECCCCceEEEEEecC---------------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence            4678899987754211111111               1146789999854444 45456788999998776422 22222


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC--CCcEEEEeC
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIKLWDI  352 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~  352 (498)
                      .-.....+++.+..++++++-...+.|.++++.    .................+++.|.+..|+....  .+.|...++
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~  152 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM  152 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECC----CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence            334567888864466666666677899999985    22222222234456789999987666655542  467777776


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEE
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYV  431 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i  431 (498)
                      ....                                   ...+-.. .....    ..+++++++..|+.+. ..+.|..
T Consensus       153 dG~~-----------------------------------~~~~~~~-~l~~P----nglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          153 DGSS-----------------------------------RFIIINS-EIYWP----NGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             TSCS-----------------------------------CEEEECS-SCSCE----EEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCC-----------------------------------eEEEEEC-CCCCc----cEEEEeccCCEEEEEECCCCEEEE
Confidence            5411                                   1111000 00111    2235565566666554 4678999


Q ss_pred             EECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          432 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       432 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +|+........+.........+++. .+.++++-...+.|..++..++..
T Consensus       193 ~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          193 SNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence            9986543332333334456677775 334555555677888888765543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.06  E-value=0.0059  Score=62.79  Aligned_cols=197  Identities=10%  Similarity=-0.019  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceecc
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESL  213 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~  213 (498)
                      .|.+..+. .+|+.+ ....|+..++....... +.  .. ...+..++|.+....|..+. ..+.|+.+++........
T Consensus       388 ~C~~~~~~-p~Ll~a-n~~~Ir~i~l~~~~~~~-l~--~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~  461 (791)
T 3m0c_C          388 ACKAVGSI-AYLFFT-NRHEVRKMTLDRSEYTS-LI--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS  461 (791)
T ss_dssp             CCEETTSC-CEEEEE-CBSSEEEECTTSCCCEE-EE--CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred             eeeecccc-cccccc-cccceeEeeccCCccee-ee--cC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc
Confidence            34443332 244444 34568888887653222 11  12 22578899998665555544 467888888875321000


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  292 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  292 (498)
                      .... ...           .......|++.+.++.|+. -...+.|.+.++........+.........|++.|..+.++
T Consensus       462 ~~~v-i~~-----------~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LY  529 (791)
T 3m0c_C          462 YDTV-ISR-----------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  529 (791)
T ss_dssp             CEEE-ECS-----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             eeEE-Eec-----------CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEE
Confidence            0000 000           0114567888887755554 45578999999976554333334445688999974445444


Q ss_pred             EEeeCC-CeEEEEcCccccCCCceeEE-eccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 010883          293 YSGSDD-NLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK  354 (498)
Q Consensus       293 ~s~s~d-g~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~  354 (498)
                      ++-... +.|...++.     +..... +.........|++++.+..|+.+. ....|...++..
T Consensus       530 wtD~g~~~~I~~~~~d-----G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          530 WTDWGTPAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             EEECSSSCEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EecCCCCCeEEEEecC-----CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            443333 678888874     333333 333345788999997766666554 456788888765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.89  E-value=0.00083  Score=60.37  Aligned_cols=162  Identities=13%  Similarity=0.111  Sum_probs=107.9

Q ss_pred             eEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE---cCCCCEEEEEe
Q 010883          178 TVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF---STDGRELVAGS  253 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~---s~~g~~l~~g~  253 (498)
                      -..+++|.+....+..++ ..+.|..|+...+..... ......    .    .+.....+..+.|   .|+++++++..
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s----~----~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS----S----NGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC----C----SSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc----c----cCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            345688988666666666 689999999976644333 221100    0    0001124688999   68887777544


Q ss_pred             -------------CCCeEEEEECC---CCeeeEEEe--cc-----------CCCeeEEEEeCCCCCEEEEeeCC-CeEEE
Q 010883          254 -------------SDDCIYVYDLE---ANKLSLRIL--AH-----------TSDVNTVCFGDESGHLIYSGSDD-NLCKV  303 (498)
Q Consensus       254 -------------~dg~i~vwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~~l~s~s~d-g~i~v  303 (498)
                                   .+..|..+|+.   +++.+....  ..           ......++.- ++++..++++.. +.|..
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEE
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEE
Confidence                         25779999999   777665543  11           1247889985 889999988888 88888


Q ss_pred             EcCccccCCCceeEEec------cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          304 WDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .+..     ++.+..+.      ......+.|+++|+++.|++....+.|..+|+..
T Consensus       164 V~pd-----G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          164 VSAD-----GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             ECTT-----SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EeCC-----CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            8764     33232221      1122367899999999988887799999999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.89  E-value=0.0001  Score=75.12  Aligned_cols=178  Identities=10%  Similarity=0.004  Sum_probs=100.3

Q ss_pred             CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCC----ceeccccccccccCcccc
Q 010883          152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFS  226 (498)
Q Consensus       152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~  226 (498)
                      .+.|++.++.+......   ... ...+..++|.+.+..|..+. ..+.|+.+++.+.    ........          
T Consensus       385 ~~~I~~id~~~~~~~~~---~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~----------  450 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSL---IPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------  450 (699)
T ss_dssp             TTC-CEECTTSCCEECC---SCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS----------
T ss_pred             ccceEEEeCCCCcceee---ecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC----------
Confidence            45788888876533221   111 12466889998777666654 3568888888751    11111100          


Q ss_pred             ccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC-CeEEEE
Q 010883          227 AADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVW  304 (498)
Q Consensus       227 ~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~vw  304 (498)
                            .-.....|++.+.+ +++++-...+.|.++++........+.........|++.|..+.++++-... +.|.++
T Consensus       451 ------~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~  524 (699)
T 1n7d_A          451 ------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  524 (699)
T ss_dssp             ------CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred             ------CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence                  00124457787544 4444444567899999876544333322334567888874455555444333 678887


Q ss_pred             cCccccCCCceeEEe-ccccccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 010883          305 DRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRK  354 (498)
Q Consensus       305 d~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~  354 (498)
                      ++.     +.....+ .......+.|+|+|++..| ++-...+.|..+++..
T Consensus       525 ~~d-----G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          525 GLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CSS-----SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             eCC-----CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            774     2222222 2223446689999875544 4555567899998864

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.85  E-value=0.0068  Score=55.00  Aligned_cols=193  Identities=14%  Similarity=0.234  Sum_probs=114.3

Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC----CCe--EEEE-EC---CCeEEEEECC--CCc
Q 010883          142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRH--LVYA-SM---SPIVHIVDVG--SGT  209 (498)
Q Consensus       142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~--l~~~-s~---d~~i~iwd~~--~~~  209 (498)
                      ...+++.....+-+.|||+ +|+.++.+..     +.++.+..-|+    |+.  |+.+ ..   +++|.+|++.  ++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            4466666677888999999 6766665421     24566665552    322  3333 33   5789999774  443


Q ss_pred             eecccccc-ccccCccccccCCCCceecEEEEEE--cCC-CC-EEEEEeCCCeEEEEECC-------CCeeeEEEeccCC
Q 010883          210 MESLANVT-EIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE-------ANKLSLRILAHTS  277 (498)
Q Consensus       210 ~~~~~~~~-~~~~~~~~~~~~~~~h~~~i~~~~~--s~~-g~-~l~~g~~dg~i~vwd~~-------~~~~~~~~~~~~~  277 (498)
                      ........ .....           ...+..+++  +|. ++ ++++...+|.+..|++.       +.+.++++. ..+
T Consensus       113 l~~i~~~~~pv~t~-----------~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgs  180 (355)
T 3amr_A          113 LQSMTDPDHPIATA-----------INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNS  180 (355)
T ss_dssp             EEECSCTTSCEECC-----------CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSS
T ss_pred             eeeccccccCcCCC-----------CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCC
Confidence            22221110 00000           014555666  664 44 67778888999999883       234555654 345


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc-CCCceeEEec-cc-cccEEEEEE--cCCCC-EEEEEe-CCCcEEEE
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-VKGKPAGVLM-GH-LEGITFIDS--RGDGR-YLISNG-KDQAIKLW  350 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~-~~-~~~v~~l~~--~~~~~-~l~s~~-~dg~i~iw  350 (498)
                      .+..+... +....|+.+-.+.-|..++.+... ...+.+..+. ++ ...+..|++  .++++ +|++++ .+....+|
T Consensus       181 q~EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy  259 (355)
T 3amr_A          181 QTEGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY  259 (355)
T ss_dssp             CEEEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             CcceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence            77777775 677788899998777666654221 1223443332 22 236788887  45555 566555 56789999


Q ss_pred             eCC
Q 010883          351 DIR  353 (498)
Q Consensus       351 d~~  353 (498)
                      |..
T Consensus       260 dr~  262 (355)
T 3amr_A          260 DRQ  262 (355)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            986

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.81  E-value=0.059  Score=57.96  Aligned_cols=194  Identities=12%  Similarity=0.077  Sum_probs=102.7

Q ss_pred             CCCceEEEEEcCC------CCEEEEEEC-CCeEEEEECCCCeEEEEEeecC-CCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883          130 TTSRAYVSQFSAD------GSLFVAGFQ-ASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH  201 (498)
Q Consensus       130 h~~~v~~~~~s~d------g~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~s~d~~i~  201 (498)
                      ....|.|+++.|.      ++++|.|.. |++|+|+++.+-+.+....... .....|.-+.+ ....+|..|-.||.+.
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~  630 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALF  630 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEE
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEE
Confidence            3568999999874      369999996 9999999998765554332211 11223333334 2346788899999876


Q ss_pred             EEECC--CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883          202 IVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV  279 (498)
Q Consensus       202 iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v  279 (498)
                      -+.++  ++.........-             | +.++.=..+...|..-+.+..+....++.-+ ++.... .-....+
T Consensus       631 ~~~~d~~tg~l~d~r~~~L-------------G-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v  694 (1158)
T 3ei3_A          631 YFGLNIETGLLSDRKKVTL-------------G-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEV  694 (1158)
T ss_dssp             EEEECTTTCCEEEEEEEEC-------------C-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCC
T ss_pred             EEEEcCCCCccccceeEEc-------------C-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHh
Confidence            66554  343322111000             0 1134333444444433333334444444433 332221 1122234


Q ss_pred             eEE-EEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883          280 NTV-CFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       280 ~~~-~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                      .++ .|+... .+-++..+ ++.++|..+...  ..-.+..+. -...+..++++|+.+.++.+..+
T Consensus       695 ~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~--~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~  757 (1158)
T 3ei3_A          695 NYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI--QKLHIRTVP-LYESPRKICYQEVSQCFGVLSSR  757 (1158)
T ss_dssp             CEEEEECCSSSTTEEEEEC-SSCEEEEEECCS--SSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred             ceEeccCcccCCCcEEEEc-CCceEEEEeccc--CCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEe
Confidence            333 454222 33454443 456888887532  222333332 34678899999988877766543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.79  E-value=0.017  Score=53.44  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS  254 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~  254 (498)
                      ....++|.|+|+++ ++...+.|.+++  +++...........           ........++|+|+   +..|.++..
T Consensus        32 ~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~-----------~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           32 VPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYH-----------RGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             CEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEee-----------cCCCCceeEEECCCCCCCCEEEEEEe
Confidence            46789999999855 456679999998  44432221111000           01125789999998   555555443


Q ss_pred             -C-----CeEEEEECCCCee-----eE-EEec---cCCCeeEEEEeCCCCCEEEEee
Q 010883          255 -D-----DCIYVYDLEANKL-----SL-RILA---HTSDVNTVCFGDESGHLIYSGS  296 (498)
Q Consensus       255 -d-----g~i~vwd~~~~~~-----~~-~~~~---~~~~v~~~~~~~~~~~~l~s~s  296 (498)
                       .     +.|..++...+..     +. .+..   .......++|. +++.+.++.+
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G  153 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG  153 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence             2     6788888775421     11 1221   11134689997 6777666643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.79  E-value=0.018  Score=59.16  Aligned_cols=198  Identities=9%  Similarity=0.000  Sum_probs=109.2

Q ss_pred             cEEEEEEcCCCCEE-EEEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883          236 GIFSLKFSTDGREL-VAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN  310 (498)
Q Consensus       236 ~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~  310 (498)
                      .+..++|.+....| ++-...+.|+.+++...    .....+.........|++....++++++-...+.|.+.++.   
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld---  501 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK---  501 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC---
Confidence            57789999855444 44455678999998753    22233333445667888864455666666778899999985   


Q ss_pred             CCCceeEEe-ccccccEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883          311 VKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK-D-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP  387 (498)
Q Consensus       311 ~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (498)
                        +.....+ .........|++.|.+..|+.... . +.|.+.++...                                
T Consensus       502 --G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--------------------------------  547 (791)
T 3m0c_C          502 --GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--------------------------------  547 (791)
T ss_dssp             --SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--------------------------------
T ss_pred             --CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--------------------------------
Confidence              3333333 234456889999997665555442 2 56777777642                                


Q ss_pred             CCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEE
Q 010883          388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVS  464 (498)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s  464 (498)
                         ....+.... ......    +++++.+..|+.+. ..+.|..+++........+..  .-....+|++.. +.++++
T Consensus       548 ---~~~~lv~~~-l~~P~G----LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwt  618 (791)
T 3m0c_C          548 ---DIYSLVTEN-IQWPNG----ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWT  618 (791)
T ss_dssp             ---CEEEEECSS-CSCEEE----EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEE
T ss_pred             ---ceEEEEeCC-CCCceE----EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEE
Confidence               111111100 011112    23443455555554 457899999865544333332  122345666632 234444


Q ss_pred             EeCCCcEEEecCCCC
Q 010883          465 SSWDGDVVRWEFPGN  479 (498)
Q Consensus       465 ~~~Dg~i~iw~~~~~  479 (498)
                      -...+.|...+..++
T Consensus       619 D~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          619 DIINEAIFSANRLTG  633 (791)
T ss_dssp             ETTTTEEEEEETTTC
T ss_pred             ECCCCEEEEEeCCCC
Confidence            445567777765444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.78  E-value=0.0078  Score=54.32  Aligned_cols=188  Identities=17%  Similarity=0.135  Sum_probs=96.5

Q ss_pred             CCCEEEEEE-CC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-----CeEEEEECCCCc-
Q 010883          142 DGSLFVAGF-QA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT-  209 (498)
Q Consensus       142 dg~~la~~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~~~~~-  209 (498)
                      ++.+++.|+ .+     ..+.+||..++. .............-..+.  .++++++.|+.+     ..+.+||..+.+ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE-WSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCe-EEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            455666666 32     368899998763 222211111111122222  256777777754     468999998876 


Q ss_pred             --eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEec-cCCCeeE
Q 010883          210 --MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILA-HTSDVNT  281 (498)
Q Consensus       210 --~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~-~~~~v~~  281 (498)
                        .......+...          ..|    ..+.+  +++.++.|+.+     ..+.+||+.+.+....-.. ....-.+
T Consensus        91 ~~W~~~~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  154 (301)
T 2vpj_A           91 GVWYSVAPMNVRR----------GLA----GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAG  154 (301)
T ss_dssp             CCCEEECCCSSCC----------BSC----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCE
T ss_pred             CeeEECCCCCCCc----------cce----eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccce
Confidence              44433222111          111    12222  57777777643     3689999988765432211 1111122


Q ss_pred             EEEeCCCCCEEEEeeCC-----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEe
Q 010883          282 VCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWD  351 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd  351 (498)
                      ++.  .++.+++.|+.+     ..+.+||+...  ....+..+.........+.+  ++++++.|+.+     ..+.+||
T Consensus       155 ~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd  228 (301)
T 2vpj_A          155 LVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYN  228 (301)
T ss_dssp             EEE--ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred             EEE--ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEe
Confidence            333  256677777754     45888887521  11111111111111222223  56677777764     3588888


Q ss_pred             CCC
Q 010883          352 IRK  354 (498)
Q Consensus       352 ~~~  354 (498)
                      +.+
T Consensus       229 ~~~  231 (301)
T 2vpj_A          229 IRT  231 (301)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            876

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.73  E-value=0.0025  Score=57.58  Aligned_cols=146  Identities=17%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             CCCeEEEEE-CC-----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----
Q 010883          187 DQRHLVYAS-MS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----  255 (498)
Q Consensus       187 ~~~~l~~~s-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----  255 (498)
                      ++.+++.|+ .+     ..+.+||..+.+.......+...          .+|    ..+.  .++..++.|+.+     
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~----~~~~--~~~~l~v~GG~~~~~~~   77 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR----------RYV----ASVS--LHDRIYVIGGYDGRSRL   77 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC----------BSC----EEEE--ETTEEEEECCBCSSCBC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh----------ccc----cEEE--ECCEEEEEcCCCCCccC
Confidence            445566665 22     36889999887765544322111          012    1122  256777777754     


Q ss_pred             CeEEEEECCCCe---eeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCC-----CeEEEEcCccccCCCceeEEeccccccE
Q 010883          256 DCIYVYDLEANK---LSLRIL-AHTSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGI  326 (498)
Q Consensus       256 g~i~vwd~~~~~---~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v  326 (498)
                      ..+.+||+.+.+   ....-. .....-.+++.  .++.+++.|+.+     ..+.+||+...  ....+..+.......
T Consensus        78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~  153 (301)
T 2vpj_A           78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGA  153 (301)
T ss_dssp             CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSC
T ss_pred             ceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccc
Confidence            469999998876   322211 11111122333  246677777654     35888887521  112222222211222


Q ss_pred             EEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 010883          327 TFIDSRGDGRYLISNGKD-----QAIKLWDIRK  354 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~  354 (498)
                      ..+.+  +++.++.|+.+     ..+.+||+.+
T Consensus       154 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          154 GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             eEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence            22222  56777777654     3477788765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.72  E-value=0.01  Score=53.54  Aligned_cols=188  Identities=14%  Similarity=0.126  Sum_probs=95.8

Q ss_pred             CCCEEEEEECC----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-----CeEEEEECCCCceec
Q 010883          142 DGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMES  212 (498)
Q Consensus       142 dg~~la~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~~~~~~~~  212 (498)
                      ++.+++.|+.+    ..+.+||..++. .............-..+.+  ++++++.|+.+     ..+.+||..+.+...
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~   91 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS   91 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence            34566666643    358899988763 2222111111111112222  67777777754     358899998877655


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEEe-ccCCCeeEEEEeC
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRIL-AHTSDVNTVCFGD  286 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-----~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~  286 (498)
                      ....+...          ..|.    .+.+  +++.++.|+.++     .+.+||+.+.+....-. .....-.+++.  
T Consensus        92 ~~~~p~~r----------~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--  153 (302)
T 2xn4_A           92 VANMRDRR----------STLG----AAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--  153 (302)
T ss_dssp             ECCCSSCC----------BSCE----EEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred             CCCCCccc----------cceE----EEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--
Confidence            44332211          1121    1222  577777777553     58889998876533211 11111122333  


Q ss_pred             CCCCEEEEeeCC-------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCC
Q 010883          287 ESGHLIYSGSDD-------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRK  354 (498)
Q Consensus       287 ~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~  354 (498)
                      .++.+++.|+.+       ..+.+||+...  ....+..+.........+.+  ++++++.|+.++     .+.+||+.+
T Consensus       154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          154 VGGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             ETTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred             ECCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence            245677777643       35788887521  11111111111112222222  567777777643     578888765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.71  E-value=0.0075  Score=55.87  Aligned_cols=207  Identities=15%  Similarity=0.077  Sum_probs=103.6

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe---ecCCCceeEEEEEeCCC---CCeEEEEEC-C-----CeE
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---LAKSLRWTVTDTSLSPD---QRHLVYASM-S-----PIV  200 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~---~~~l~~~s~-d-----~~i  200 (498)
                      .-..++|.|||+++++ ..+|.|++++  ++.. ....   ...........++|+|+   +..|.++.. .     +.|
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            4578999999996655 5679999998  4432 1111   11112346889999998   554544432 2     578


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC-
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN-  266 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-------------dg~i~vwd~~~~-  266 (498)
                      ..++...+.......+.   ..  +.......|.  ...++|.|||.+.++.+.             .|.|.-++.... 
T Consensus       108 ~r~~~~~~~~~~~~~l~---~~--~p~~~~~~h~--~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVL---DG--IPARPHGLHS--GGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             EEEEECSSCEEEEEEEE---EE--ECCCTTCCCC--CCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             EEEEeCCCCcCceEEEE---Ee--CCCCCCCCcC--CceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence            88887654221100000   00  0000011232  357999999976555432             256666665430 


Q ss_pred             ------------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe--------EEEEcCccc--------c--C--CCc
Q 010883          267 ------------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL--------CKVWDRRCL--------N--V--KGK  314 (498)
Q Consensus       267 ------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~--------i~vwd~~~~--------~--~--~~~  314 (498)
                                  ....-..++. ....++|.|.+++++++-.....        |.+...-..        .  .  ...
T Consensus       181 p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                        1111111332 35678897446766655443333        433321100        0  0  012


Q ss_pred             eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          315 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      ++..+.. ......++| .+|.++++.-..+.|...++.
T Consensus       260 p~~~~~~-~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~  296 (352)
T 2ism_A          260 PLYFWPQ-GFPPGNLAF-FRGDLYVAGLRGQALLRLVLE  296 (352)
T ss_dssp             CSEECTT-CCCEEEEEE-ETTEEEEEETTTTEEEEEEEE
T ss_pred             CeEecCC-CCCCcceEE-ECCEEEEEECCCCEEEEEEEC
Confidence            3333322 234556776 356655555555666666654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.70  E-value=0.054  Score=54.32  Aligned_cols=227  Identities=7%  Similarity=0.006  Sum_probs=130.8

Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCee
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKL  268 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~  268 (498)
                      +|+.+ ....|+..++.+........+...               ..+..++|++.+..|+.+ ..++.|+.+++.....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~---------------~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~   71 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGV---------------KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL   71 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSC---------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCC---------------CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc
Confidence            45544 457899999986543222221111               157889999866555544 4578899999876544


Q ss_pred             eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE-eccccccEEEEEEcCCCCEEEEEeC--CC
Q 010883          269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGK--DQ  345 (498)
Q Consensus       269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~--dg  345 (498)
                      ...+.........+++....++++++-...+.|.+.++.     +..... ..........|++.|....|+....  .+
T Consensus        72 ~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-----G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~  146 (628)
T 4a0p_A           72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-----GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP  146 (628)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-----CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence            333333334567888864456666666667899999985     222222 2234456789999986555554442  45


Q ss_pred             cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-
Q 010883          346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-  424 (498)
Q Consensus       346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-  424 (498)
                      .|...++.....                                ..+  ...   .....    .+++++++..|+.+. 
T Consensus       147 ~I~r~~~dG~~~--------------------------------~~l--~~~---~~~P~----GlalD~~~~~LY~aD~  185 (628)
T 4a0p_A          147 KIDRAAMDGSER--------------------------------TTL--VPN---VGRAN----GLTIDYAKRRLYWTDL  185 (628)
T ss_dssp             EEEEEETTSCSC--------------------------------EEE--ECS---CSSEE----EEEEETTTTEEEEEET
T ss_pred             EEEEEeCCCCce--------------------------------EEE--ECC---CCCcc----eEEEccccCEEEEEEC
Confidence            677777654210                                011  111   11111    224455556666554 


Q ss_pred             cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          425 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       425 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ..+.|..+|+..... ..+.........+++.. +.++++-...+.|...|..++.
T Consensus       186 ~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          186 DTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             TTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            467899999865443 23333334456777764 3444444457788888865554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.68  E-value=0.011  Score=54.10  Aligned_cols=192  Identities=12%  Similarity=0.048  Sum_probs=105.8

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~  211 (498)
                      ..++.+.+.+++..++++ .+|.|.. ..+.|.......  ......+..+.+.|++.+++++...+..+-+|-......
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~  197 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE  197 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee
Confidence            457888888888777665 4554322 223343333322  233446889999999888776644433333332111111


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-c---cCCCeeEEEEeCC
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-A---HTSDVNTVCFGDE  287 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~---~~~~v~~~~~~~~  287 (498)
                      .. ..               .....+..+.+.++++.+ .++.+|.+++.+...++.-..+. .   +...+.++.+. +
T Consensus       198 ~~-~~---------------~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~-~  259 (327)
T 2xbg_A          198 PH-NR---------------TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR-T  259 (327)
T ss_dssp             EE-EC---------------CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES-S
T ss_pred             EC-CC---------------CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec-C
Confidence            11 10               112267889999998755 55567888776533333322222 1   22357888886 5


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEec---cccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      ++.+++++ .+|.|. +...    .+..-..+.   .....+..+.|.+++ .+++++.+|.|.-++-
T Consensus       260 ~~~~~~~g-~~g~i~-~S~D----gG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          260 PNEVWLAG-GAGALL-CSQD----GGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             SSCEEEEE-STTCEE-EESS----TTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             CCEEEEEe-CCCeEE-EeCC----CCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            56666555 467663 3332    222222222   123567788887554 4666778888777664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.67  E-value=0.06  Score=53.95  Aligned_cols=186  Identities=9%  Similarity=0.050  Sum_probs=113.6

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGL  223 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (498)
                      +|+.+ ....|+..++++..... .....+ -..+..++|.+.+..|..+. .++.|..+++............      
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g------   78 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNV-AIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG------   78 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEE-ECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------
T ss_pred             EEEEE-eCCcEEEEECCCCCcce-EEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC------
Confidence            45444 45689999998653222 222222 23578999999776666554 4688999988765432222110      


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeE
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLC  301 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i  301 (498)
                                ...+..+++.+.+..|+. -...+.|.+.++........+...-.....|++.|..+.++++- +..+.|
T Consensus        79 ----------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I  148 (628)
T 4a0p_A           79 ----------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKI  148 (628)
T ss_dssp             ----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             ----------CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence                      013567888876555544 44567899999876543222323445678999975455544443 225678


Q ss_pred             EEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883          302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK  354 (498)
Q Consensus       302 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  354 (498)
                      ...++.     +.....+.........|++++++..|+.+ ...+.|..+|+..
T Consensus       149 ~r~~~d-----G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          149 DRAAMD-----GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             EEEETT-----SCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeCC-----CCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence            777774     33333333345667899999976666555 4567788888865

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.65  E-value=0.0065  Score=54.87  Aligned_cols=230  Identities=12%  Similarity=0.076  Sum_probs=110.3

Q ss_pred             CCeEEEEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeE
Q 010883          188 QRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCI  258 (498)
Q Consensus       188 ~~~l~~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i  258 (498)
                      +.+++.|+.+    ..+.++|..+.+.......+...          .+|.    .+.+  ++..++.|+.+     ..+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~----~~~~--~~~lyv~GG~~~~~~~~~~   79 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR----------CRAG----MVYM--AGLVFAVGGFNGSLRVRTV   79 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC----------BSCE----EEEE--TTEEEEESCBCSSSBCCCE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc----------ccce----EEEE--CCEEEEEeCcCCCccccce
Confidence            3455555543    35888998887654443222111          1121    1222  66777777754     358


Q ss_pred             EEEECCCCeeeEEEec-cCCCeeEEEEeCCCCCEEEEeeCCC-----eEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          259 YVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       259 ~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                      .+||..+.+....-.. ....-.+++.  .++.+++.|+.++     .+.+||+...  ....+..+.........+.+ 
T Consensus        80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~-  154 (302)
T 2xn4_A           80 DSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVV-  154 (302)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE-
T ss_pred             EEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEE-
Confidence            8999988765332111 1111122333  2466777777553     4777887521  11111111111111122222 


Q ss_pred             CCCCEEEEEeCC-------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883          333 GDGRYLISNGKD-------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI  405 (498)
Q Consensus       333 ~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (498)
                       +++.++.|+.+       ..+.+||+.+..-..                                +..+....   ...
T Consensus       155 -~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--------------------------------~~~~p~~r---~~~  198 (302)
T 2xn4_A          155 -GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY--------------------------------IAEMSTRR---SGA  198 (302)
T ss_dssp             -TTEEEEECCEETTTTEECCCEEEEETTTTEEEE--------------------------------ECCCSSCC---BSC
T ss_pred             -CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE--------------------------------CCCCcccc---ccc
Confidence             56666666543       347778876532100                                00000000   000


Q ss_pred             EEEeccccCCCCcEEEEEecC-----CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC-----cEEEec
Q 010883          406 RCHFSPVYSTGQKYIYTGSHD-----SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWE  475 (498)
Q Consensus       406 ~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg-----~i~iw~  475 (498)
                      .+.     .-++++++.|+.+     ..+.+||+.+.+-...-..........+..-++++++.|+.++     .|.+||
T Consensus       199 ~~~-----~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd  273 (302)
T 2xn4_A          199 GVG-----VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYN  273 (302)
T ss_dssp             EEE-----EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             cEE-----EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEc
Confidence            000     0156777777664     4699999987654322111111111112223677788887654     478888


Q ss_pred             CCCC
Q 010883          476 FPGN  479 (498)
Q Consensus       476 ~~~~  479 (498)
                      +...
T Consensus       274 ~~~~  277 (302)
T 2xn4_A          274 PTTD  277 (302)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.64  E-value=0.024  Score=51.42  Aligned_cols=204  Identities=12%  Similarity=0.195  Sum_probs=116.4

Q ss_pred             CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC----CCCE--E-EEEeC---CC
Q 010883          187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRE--L-VAGSS---DD  256 (498)
Q Consensus       187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~----~g~~--l-~~g~~---dg  256 (498)
                      ...+++.....+-+.+||+ +|+........                  .++.+..-|    .|+.  + ++...   ++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g------------------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n   99 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG------------------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKN   99 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCS------------------CEEEEEEEEEEEETTEEEEEEEEEECSTTCC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCC------------------CcccEEEecccccCCceEeEEEEeCCCCCCC
Confidence            3455666677789999999 55554443211                  234444433    2322  3 33333   57


Q ss_pred             eEEEEECC--CCeeeEEEec------cC-CCeeEEEE--eCCCCC-EEEEeeCCCeEEEEcCccc---cCCCceeEEecc
Q 010883          257 CIYVYDLE--ANKLSLRILA------HT-SDVNTVCF--GDESGH-LIYSGSDDNLCKVWDRRCL---NVKGKPAGVLMG  321 (498)
Q Consensus       257 ~i~vwd~~--~~~~~~~~~~------~~-~~v~~~~~--~~~~~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~  321 (498)
                      +|.+|++.  +++ +..+..      .. ..+..+|+  ++..+. ++++...+|.+..|++...   ....+.++.+..
T Consensus       100 ~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l  178 (355)
T 3amr_A          100 TIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM  178 (355)
T ss_dssp             EEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             eEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence            89999773  333 333311      11 45666776  544454 6888888999999998421   123455566553


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-
Q 010883          322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-  400 (498)
Q Consensus       322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  400 (498)
                       .+.+..+...+....|+.+-.+..|..++.+......                             ...+..+..... 
T Consensus       179 -gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~-----------------------------~~~v~~~~~g~l~  228 (355)
T 3amr_A          179 -NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSN-----------------------------GTVIDRADGRHLT  228 (355)
T ss_dssp             -SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSC-----------------------------CEEEEEBSSSSBC
T ss_pred             -CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCC-----------------------------ceEEEEecCCccc
Confidence             3578889999988899999998666556644211000                             122333321111 


Q ss_pred             -eEEEEEEEeccccCCCCc-EEEEEe-cCCeEEEEECC-CCcEEEEec
Q 010883          401 -LRTLIRCHFSPVYSTGQK-YIYTGS-HDSCVYVYDLV-SGEQVAALK  444 (498)
Q Consensus       401 -~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iwd~~-~~~~~~~~~  444 (498)
                       ...-+.....    ++++ ||++++ .+++..+||.. +.+.+..+.
T Consensus       229 aDvEGLai~~~----~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          229 RDIEGLTIYYA----ADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             SCEEEEEEEEC----GGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cCcceEEEEec----CCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence             1111112112    2444 666666 47799999997 677777774

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.64  E-value=0.059  Score=58.01  Aligned_cols=184  Identities=10%  Similarity=0.097  Sum_probs=100.9

Q ss_pred             CCEEEEEe----------CCCeEEEEECCCCeeeEEE-eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883          246 GRELVAGS----------SDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK  314 (498)
Q Consensus       246 g~~l~~g~----------~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  314 (498)
                      ..+|++|+          ..|.|++|++..++..... ....++|++++-.  ++. |++|- ...|++|++.    ..+
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~-Lla~i-g~~l~vy~l~----~~~  915 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGK-LLASI-NSTVRLYEWT----TEK  915 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTE-EEEEE-TTEEEEEEEC----TTS
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCE-EEEEc-CCEEEEEECC----CCc
Confidence            46888886          3578999998755433222 2456889998854  354 44443 4789999986    333


Q ss_pred             eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEE
Q 010883          315 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT  394 (498)
Q Consensus       315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (498)
                      .+..-..+-..|..+.....+++++.|..-..|.++..+...                                 ..+..
T Consensus       916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~---------------------------------~~L~~  962 (1158)
T 3ei3_A          916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME---------------------------------GNFEE  962 (1158)
T ss_dssp             CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---------------------------------TEEEE
T ss_pred             eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---------------------------------CeEEE
Confidence            222111111112222222246788888877777776544311                                 23333


Q ss_pred             EccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC--------cEEEEeccC-CCCeeeeE---EcCCC---
Q 010883          395 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--------EQVAALKYH-TSPVRDCS---WHPSQ---  459 (498)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h-~~~v~~l~---~sp~~---  459 (498)
                      +..+.....+..+.+-     +...++.+..+|.|.++.....        ++...-.-| ...|+++.   +.+.+   
T Consensus       963 ~a~D~~~~~vta~~~l-----d~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~ 1037 (1158)
T 3ei3_A          963 IARDFNPNWMSAVEIL-----DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE 1037 (1158)
T ss_dssp             EEECCSCBCEEEEEEE-----ETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC----
T ss_pred             EEeecccccEEEEEEE-----ccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcc
Confidence            3333222333333222     2346778889999999876541        222221222 34566654   33322   


Q ss_pred             ------CeEEEEeCCCcEEEec
Q 010883          460 ------PMLVSSSWDGDVVRWE  475 (498)
Q Consensus       460 ------~~l~s~~~Dg~i~iw~  475 (498)
                            ..++-++.+|.|-+.-
T Consensus      1038 ~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A         1038 TSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp             ---CEEEEEEEEETTSCEEEEE
T ss_pred             ccccccceEEEEecCCEEEEEE
Confidence                  3577888899987763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.64  E-value=0.015  Score=52.50  Aligned_cols=144  Identities=12%  Similarity=0.170  Sum_probs=74.6

Q ss_pred             CeEEEEEC--CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEE
Q 010883          189 RHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYD  262 (498)
Q Consensus       189 ~~l~~~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----g~i~vwd  262 (498)
                      .+++.|+.  ...+.+||..+++.......+...          .+|    ..+.+  ++..++.|+.+    ..+.+||
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~d   76 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKR----------RDA----ACVFW--DNVVYILGGSQLFPIKRMDCYN   76 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCC----------BSC----EEEEE--TTEEEEECCBSSSBCCEEEEEE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCccc----------cee----EEEEE--CCEEEEEeCCCCCCcceEEEEe
Confidence            34555654  357899999988766554332211          112    12222  56677777754    6789999


Q ss_pred             CCCCeeeEEEeccC-CCeeEEEEeCCCCCEEEEeeCC------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883          263 LEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG  335 (498)
Q Consensus       263 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  335 (498)
                      +.+++....-.... ..-.+++.  .++.+++.|+.+      ..+.+||+...  ....+..+.........+.+  ++
T Consensus        77 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~  150 (306)
T 3ii7_A           77 VVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSMLTQRCSHGMVEA--NG  150 (306)
T ss_dssp             TTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TT
T ss_pred             CCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCCcCCcceeEEEEE--CC
Confidence            99876533221111 11122222  256677777765      45888887621  11111111111111122222  56


Q ss_pred             CEEEEEeC---------CCcEEEEeCCC
Q 010883          336 RYLISNGK---------DQAIKLWDIRK  354 (498)
Q Consensus       336 ~~l~s~~~---------dg~i~iwd~~~  354 (498)
                      ++++.|+.         -..+.+||+.+
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCC
Confidence            66666653         23477888766

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.63  E-value=0.026  Score=56.48  Aligned_cols=181  Identities=10%  Similarity=0.082  Sum_probs=103.1

Q ss_pred             CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCce-eccccccccccCcccccc
Q 010883          151 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAA  228 (498)
Q Consensus       151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~  228 (498)
                      ....|++.++........ ...... ..+..++|++.+..|..+.. .+.|..+++..... ......     +      
T Consensus        16 ~~~~I~~i~~~~~~~~~~-~~~~~~-~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-----~------   82 (619)
T 3s94_A           16 NRRDLRLVDATNGKENAT-IVVGGL-EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-----G------   82 (619)
T ss_dssp             CSSBEEEECCC----------CBCC-SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-----S------
T ss_pred             ccccEEEEeCCCCcceEE-EEEcCC-CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-----C------
Confidence            356788888875421111 112222 25788999997777766654 57888888875421 111110     0      


Q ss_pred             CCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCeEEEEcC
Q 010883          229 DDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDR  306 (498)
Q Consensus       229 ~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~  306 (498)
                           -.....+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|..+.++++-- ..+.|...++
T Consensus        83 -----~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~  157 (619)
T 3s94_A           83 -----LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM  157 (619)
T ss_dssp             -----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             -----CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEEC
Confidence                 0157889999866555554 45789999998765433333244456788999744454444432 2456776666


Q ss_pred             ccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883          307 RCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK  354 (498)
Q Consensus       307 ~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  354 (498)
                      .     +.....+ .........|++++++..|+.+ ...+.|...|+..
T Consensus       158 d-----G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          158 D-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             T-----SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             C-----CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            4     3322222 2234567899999876666554 4456788888764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.61  E-value=0.022  Score=51.42  Aligned_cols=186  Identities=10%  Similarity=0.060  Sum_probs=95.4

Q ss_pred             CEEEEEEC--CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC----CeEEEEECCCCceecccccc
Q 010883          144 SLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVT  217 (498)
Q Consensus       144 ~~la~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d----~~i~iwd~~~~~~~~~~~~~  217 (498)
                      .+++.|+.  ...+.+||..++.- ............-..+.+  ++++++.|+.+    ..+.+||..+++.......+
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSW-TDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEE-EECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCE-ecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            45556654  35689999988632 222111111112222222  66777777754    57899999888765543322


Q ss_pred             ccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEEEec-cCCCeeEEEEeCCCCC
Q 010883          218 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGH  290 (498)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  290 (498)
                      ...          .+|    ..+.+  +++.++.|+.+      ..+.+||..+.+....-.. ....-.+++.  .++.
T Consensus        90 ~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~  151 (306)
T 3ii7_A           90 TPR----------DSL----AACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGL  151 (306)
T ss_dssp             SCC----------BSC----EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE
T ss_pred             ccc----------cce----eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCE
Confidence            111          112    12222  67777777755      4589999988765332111 1111122233  2456


Q ss_pred             EEEEeeC---------CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 010883          291 LIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK  354 (498)
Q Consensus       291 ~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~  354 (498)
                      +++.|+.         -..+.+||+...  ....+..+......-..+.+  ++++++.|+.+     ..+.+||+.+
T Consensus       152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          152 IYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             EEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred             EEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence            7777654         345888888621  11111111111111222222  56677777654     3578888776

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.51  E-value=0.028  Score=51.03  Aligned_cols=184  Identities=13%  Similarity=0.049  Sum_probs=93.6

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-----C------CeEEEEECCCCceecc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----S------PIVHIVDVGSGTMESL  213 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-----d------~~i~iwd~~~~~~~~~  213 (498)
                      +++.|+  ..+.+||..++.-..  .................++++++.|+.     .      ..+.+||..+++....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred             EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence            344554  579999998874222  111111111222233457888888873     1      1378899888776554


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeEEEe-ccCCCeeEEEE
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRIL-AHTSDVNTVCF  284 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~  284 (498)
                      ...+....          +|    ..+.+  +++.++.|+.+        ..+.+||..+.+....-. .....-.+++.
T Consensus        83 ~~~p~~r~----------~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  146 (315)
T 4asc_A           83 PPLPSPRC----------LF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS  146 (315)
T ss_dssp             CCBSSCEE----------SC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             CCCCcchh----------ce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence            33322110          11    11222  56677777632        458999998876432111 11111122233


Q ss_pred             eCCCCCEEEEeeC-C-----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCC
Q 010883          285 GDESGHLIYSGSD-D-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIR  353 (498)
Q Consensus       285 ~~~~~~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~  353 (498)
                        .++.+++.|+. +     ..+.+||+...  ....+..+.........+.+  ++++++.|+.++     .+.+||+.
T Consensus       147 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          147 --HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             --ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred             --ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence              34567777776 2     46888887621  11111111111111222222  567777777654     47788876


Q ss_pred             C
Q 010883          354 K  354 (498)
Q Consensus       354 ~  354 (498)
                      +
T Consensus       221 ~  221 (315)
T 4asc_A          221 D  221 (315)
T ss_dssp             T
T ss_pred             C
Confidence            6

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.46  E-value=0.0062  Score=65.01  Aligned_cols=268  Identities=10%  Similarity=0.140  Sum_probs=152.3

Q ss_pred             CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCC
Q 010883          152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG  231 (498)
Q Consensus       152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (498)
                      ...|.|-|+.++..+.+...      .--+.-.+|..+.||.-. ..++.|+|+++........+.+             
T Consensus        47 ~~~vvIidl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-------------  106 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-------------  106 (1630)
T ss_pred             CceEEEEECCCCCCcccccc------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-------------
Confidence            44788999988644322111      122344688888777664 6789999999877665555443             


Q ss_pred             CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEecc----CCCeeEEEEeCCCCCEEEEee-------CCC
Q 010883          232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH----TSDVNTVCFGDESGHLIYSGS-------DDN  299 (498)
Q Consensus       232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~s-------~dg  299 (498)
                          +|.--.|-.+.. |+..+ +..|+-|++... .++..+..|    ...|..-..+ ++.++++..+       -.|
T Consensus       107 ----~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G  179 (1630)
T 1xi4_A          107 ----DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG  179 (1630)
T ss_pred             ----CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeC-CCCCeEEEEeeccCCCcccc
Confidence                566677775554 44444 457999999743 333333333    3445555554 5666665433       358


Q ss_pred             eEEEEcCccccCCCceeEEeccccccEEEEEEcC--C-CCEEEEEeC---CCcEEEEeCCCC-CCccccccCcccccccc
Q 010883          300 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG--D-GRYLISNGK---DQAIKLWDIRKM-SSNASCNLGFRSYEWDY  372 (498)
Q Consensus       300 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~  372 (498)
                      .+.+|...     .+....+.||......+....  . ...++.+..   .+.+.|-++... .....+.       ...
T Consensus       180 ~mQLyS~e-----r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~-------kk~  247 (1630)
T 1xi4_A          180 AMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-------KKA  247 (1630)
T ss_pred             eeeeeecc-----cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc-------ccc
Confidence            89999884     455556777766554444421  1 223332222   267888888653 1111100       000


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD  452 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  452 (498)
                      ..+.++|+                      ....+..++..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..
T Consensus       248 ~~~~~~~~----------------------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~  305 (1630)
T 1xi4_A          248 VDVFFPPE----------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV  305 (1630)
T ss_pred             ccccCCcc----------------------cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence            00111111                      11111122234455667888889999999999999988766555556655


Q ss_pred             eEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          453 CSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       453 l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      .+-+....-++.....|.|.--.++...
T Consensus       306 ~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          306 TAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             eccCCCCCceEEEcCCceEEEEEEccch
Confidence            5554443445555566766655555443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.45  E-value=0.02  Score=51.78  Aligned_cols=190  Identities=12%  Similarity=0.048  Sum_probs=97.2

Q ss_pred             cCCCCEEEEEECC----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----C-----CeEEEEECC
Q 010883          140 SADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----S-----PIVHIVDVG  206 (498)
Q Consensus       140 s~dg~~la~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----d-----~~i~iwd~~  206 (498)
                      .-++.+++.|+.+    ..+.+||..++. .............-..+.+  ++++++.|+.    +     ..+.+||..
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGT-WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCe-EeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            3456777777642    368899998763 2222111111111122222  6677777665    2     368899998


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEe-ccCCCee
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRIL-AHTSDVN  280 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~-~~~~~v~  280 (498)
                      +.+.......+...          ..|    ..+.+  +++.++.|+.+     ..+.+||+.+.+....-. .....-.
T Consensus        99 ~~~W~~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  162 (308)
T 1zgk_A           99 TNQWSPCAPMSVPR----------NRI----GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV  162 (308)
T ss_dssp             TTEEEECCCCSSCC----------BTC----EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred             CCeEeECCCCCcCc----------ccc----EEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce
Confidence            87765544322211          011    12222  66777776643     358899998876532211 1111112


Q ss_pred             EEEEeCCCCCEEEEeeCC-----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q 010883          281 TVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLW  350 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iw  350 (498)
                      +++..  ++.+++.|+.+     ..+.+||+...  ....+..+.........+.+  ++++++.|+.+     ..+.+|
T Consensus       163 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          163 GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred             EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence            23332  46677777754     45888887521  11111111111112222333  56777777764     458888


Q ss_pred             eCCC
Q 010883          351 DIRK  354 (498)
Q Consensus       351 d~~~  354 (498)
                      |+.+
T Consensus       237 d~~~  240 (308)
T 1zgk_A          237 DVET  240 (308)
T ss_dssp             ETTT
T ss_pred             eCCC
Confidence            8776

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.45  E-value=0.016  Score=53.31  Aligned_cols=200  Identities=12%  Similarity=0.094  Sum_probs=110.7

Q ss_pred             ceEEEEEcCCCCEEEEEE------------CCCeEEEEECCCC-eEEEEEeecC----CCceeEEEEEeCC--CCC-eEE
Q 010883          133 RAYVSQFSADGSLFVAGF------------QASQIRIYDVERG-WKIQKDILAK----SLRWTVTDTSLSP--DQR-HLV  192 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~------------~dg~i~vw~~~~~-~~~~~~~~~~----~~~~~v~~~~~sp--~~~-~l~  192 (498)
                      ..-.++..|+|..+++++            .+|.|.++|.++. .....+....    ........+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            344566788876555542            6899999998742 1122222211    1234566677655  454 344


Q ss_pred             EEE-C--CCeEEEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--------------
Q 010883          193 YAS-M--SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------  253 (498)
Q Consensus       193 ~~s-~--d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--------------  253 (498)
                      ++. .  +..|.+|++..+.  .........             ..-...+++.+.++|++.++..              
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-------------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~  197 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH  197 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECC-------------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEecccc-------------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence            432 2  4578888775432  211111111             0112588999999998766653              


Q ss_pred             ---CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          254 ---SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       254 ---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                         ..|.|+-+|.  ++. ..+...-...+.++|+ ++++.|+.+ +..+.|..|++.... .......+ ......-.+
T Consensus       198 ~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~~g-~l~~~~~~-~~~g~PDGi  271 (355)
T 3sre_A          198 LGLAWSFVTYYSP--NDV-RVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANW-TLTPLRVL-SFDTLVDNI  271 (355)
T ss_dssp             TTCCCEEEEEECT--TCC-EEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEE-ECSSEEEEE
T ss_pred             ccCCccEEEEEEC--CeE-EEeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECCCC-cEecCEEE-eCCCCCceE
Confidence               1245666665  332 2333334567999998 677665555 467899999986211 11112233 223556778


Q ss_pred             EEcC-CCCEEEEEeCC-CcEEEEe
Q 010883          330 DSRG-DGRYLISNGKD-QAIKLWD  351 (498)
Q Consensus       330 ~~~~-~~~~l~s~~~d-g~i~iwd  351 (498)
                      ++.+ +|++.+++..+ +.|..|+
T Consensus       272 ~vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          272 SVDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             EECTTTCCEEEEEESCHHHHHSCC
T ss_pred             EEeCCCCcEEEEecCCceEEEEEC
Confidence            8998 58887766544 3344443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.42  E-value=0.0089  Score=55.44  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=98.3

Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCC--CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc-c
Q 010883          139 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-N  215 (498)
Q Consensus       139 ~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~-~  215 (498)
                      ...+|..++.+ .++.||.-++..+... +.+....  .-..|..+..+|+|++||..+ +..|.|..+..+...... .
T Consensus        28 ~~~n~t~i~~a-~~n~iR~~~i~~~~~Y-k~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           28 SSQNGTRIVFI-QDNIIRWYNVLTDSLY-HSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EETTTTEEEEE-ETTEEEEEETTTCSSC-EEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             EEcCCCEEEEE-ECCEEEEEECCCCCcc-eEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence            44567777766 4578998888754322 2223321  122578899999999999886 458999988743221110 0


Q ss_pred             ccccccCccccccC-CCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCe--eeEEEe---------ccCCCee
Q 010883          216 VTEIHDGLDFSAAD-DGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANK--LSLRIL---------AHTSDVN  280 (498)
Q Consensus       216 ~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~---~g~~l~~g~~dg~i~vwd~~~~~--~~~~~~---------~~~~~v~  280 (498)
                      .........+.... ......+|..+.|+|   .+..|++-..|+.|++||+....  +. .+.         .....|.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence            00000000011100 011245899999999   45689999999999999998522  22 221         2235788


Q ss_pred             EEEEeCCCCCEEEEee--CCCeEEEE
Q 010883          281 TVCFGDESGHLIYSGS--DDNLCKVW  304 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s--~dg~i~vw  304 (498)
                      +++|. .++-.|+..+  ..|.|+-.
T Consensus       184 S~~Fg-~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          184 DLEFS-KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEc-CCCcEEEEEecCCCCCEEEE
Confidence            99997 5777777755  77888754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.40  E-value=0.08  Score=48.88  Aligned_cols=56  Identities=20%  Similarity=0.219  Sum_probs=38.1

Q ss_pred             CCcEEEEEecCCeEEEEECCCCcEEEE---eccCCCCeeeeEEcCCCCeEEEEe-CCCcE
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGEQVAA---LKYHTSPVRDCSWHPSQPMLVSSS-WDGDV  471 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i  471 (498)
                      +|.++++....+.|...++..++.+..   +......+.++++.|||.++++.. .+|.|
T Consensus       288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            577777777788898888876654332   222345799999999998666543 34533

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.35  E-value=0.029  Score=50.86  Aligned_cols=140  Identities=13%  Similarity=0.091  Sum_probs=69.7

Q ss_pred             EEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----C------CeEE
Q 010883          191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----D------DCIY  259 (498)
Q Consensus       191 l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----d------g~i~  259 (498)
                      ++.|+  ..+.+||..+++... ...+....              .........++..++.|+.     .      ..+.
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~--------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~   70 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC-ASLSSQVP--------------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL   70 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE-EECCCCSC--------------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEE
T ss_pred             EEEcC--CceEEECCCCCeEec-CCCCCCCC--------------ccceEEEEECCEEEEEcCcccCCCCCccccccceE
Confidence            34454  579999999887643 21111000              1112222347788888873     1      1378


Q ss_pred             EEECCCCeeeEEEeccCCCe--eEEEEeCCCCCEEEEeeCC--------CeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883          260 VYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFI  329 (498)
Q Consensus       260 vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l  329 (498)
                      +||..+++... +..-..+-  .+++.  .++.+++.|+.+        ..+.+||+...  ....+..+.........+
T Consensus        71 ~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~  145 (315)
T 4asc_A           71 QFDHLDSEWLG-MPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVL  145 (315)
T ss_dssp             EEETTTTEEEE-CCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEE
T ss_pred             EecCCCCeEEE-CCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeEE
Confidence            89998876532 22111111  12233  246677777642        35888887621  111111111111112222


Q ss_pred             EEcCCCCEEEEEeC-C-----CcEEEEeCCC
Q 010883          330 DSRGDGRYLISNGK-D-----QAIKLWDIRK  354 (498)
Q Consensus       330 ~~~~~~~~l~s~~~-d-----g~i~iwd~~~  354 (498)
                      .  -+++.++.|+. +     ..+.+||+.+
T Consensus       146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             E--ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             E--ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence            2  25667777775 2     3578888765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.34  E-value=0.0011  Score=67.53  Aligned_cols=220  Identities=10%  Similarity=0.003  Sum_probs=115.8

Q ss_pred             CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeeeEE
Q 010883          197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA----NKLSLR  271 (498)
Q Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~----~~~~~~  271 (498)
                      .+.|+..++.+.....+....                 ..+..++|.+.+..|+... ..+.|+.+++..    ......
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~-----------------~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~  447 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL-----------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV  447 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC-----------------TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB
T ss_pred             ccceEEEeCCCCcceeeeccC-----------------cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE
Confidence            356777777765543332211                 1356788998666666554 457899999875    222222


Q ss_pred             EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeC-C-CcEE
Q 010883          272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK-D-QAIK  348 (498)
Q Consensus       272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~-d-g~i~  348 (498)
                      +.........|++.+..++++++-...+.|.++++.     +.....+ .........|+++|.+.+|+.... . +.|.
T Consensus       448 i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d-----g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~  522 (699)
T 1n7d_A          448 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-----GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK  522 (699)
T ss_dssp             CCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS-----SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred             EeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC-----CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence            211223346677753455666665667889999985     2322332 222344567888886555444332 2 5666


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE-ecCC
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SHDS  427 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg  427 (498)
                      ++++.....                                   ..+.... ..    ....++++|++..|+.+ +..+
T Consensus       523 ~~~~dG~~~-----------------------------------~~l~~~~-l~----~PnGlavd~~~~~LY~aD~~~~  562 (699)
T 1n7d_A          523 KGGLNGVDI-----------------------------------YSLVTEN-IQ----WPNGITLDLLSGRLYWVDSKLH  562 (699)
T ss_dssp             BCCSSSCCC-----------------------------------CEESCSS-CS----SCCCEEECTTTCCEEEEETTTT
T ss_pred             EEeCCCCCe-----------------------------------eEEEeCC-CC----CccEEEEeccCCEEEEEecCCC
Confidence            666543110                                   0000000 00    01123566565555544 4567


Q ss_pred             eEEEEECCCCcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          428 CVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       428 ~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      .|.++++........+.  ........|++..+ .++++....+.|..++..++
T Consensus       563 ~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             EEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             eEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence            89999986543333332  11233456666543 35555556678888876443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.32  E-value=0.1  Score=48.23  Aligned_cols=211  Identities=11%  Similarity=0.034  Sum_probs=106.9

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCCC---CCeEEEEEC----C----Ce
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPD---QRHLVYASM----S----PI  199 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~s~----d----~~  199 (498)
                      ..-..++|.|||+++++ ..+|.|++++. ++. .+...............|+|+|+   +..|.++..    +    +.
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            34578999999985554 56699999973 453 11111011112345889999997   444444332    3    56


Q ss_pred             EEEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-------------CCeEEEEECC
Q 010883          200 VHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLE  264 (498)
Q Consensus       200 i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-------------dg~i~vwd~~  264 (498)
                      |..|+.....  ......+   ...  +.  ....|  ....++|.|||.++++.+.             .|.|.-++..
T Consensus       107 v~r~~~~~~~~~~~~~~~l---~~~--~~--~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTL---IDG--IP--GAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEE---EEE--EE--CCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             EEEEEECCCCcCcCccEEE---EEc--CC--CCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence            7777766541  1100000   000  00  01123  2356899999986665432             2456666654


Q ss_pred             CC--------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC---eEEEEcCcc--------cc--C--CCceeEEecc
Q 010883          265 AN--------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRC--------LN--V--KGKPAGVLMG  321 (498)
Q Consensus       265 ~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~--------~~--~--~~~~~~~~~~  321 (498)
                      ..        ....-..++. ....++|.|.+++++++-....   .|.+...-.        ..  .  ...++..+..
T Consensus       178 G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          178 GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            32        0111112443 3467999743666655543222   244332110        00  0  0123333311


Q ss_pred             ccccEEEEEEc-------CCCCEEEEEeCCCcEEEEeCCC
Q 010883          322 HLEGITFIDSR-------GDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       322 ~~~~v~~l~~~-------~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .......++|.       .+|.++++.-..+.|...++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            23456778873       4566666665666777777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.26  E-value=0.079  Score=48.94  Aligned_cols=146  Identities=12%  Similarity=0.096  Sum_probs=77.6

Q ss_pred             CCCEEEEEEC-CCeEEEEECCC-CeEEEEEeecC-CCceeEEEEEeCCCCCeEEEEEC-C---------CeEEEEECCCC
Q 010883          142 DGSLFVAGFQ-ASQIRIYDVER-GWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASM-S---------PIVHIVDVGSG  208 (498)
Q Consensus       142 dg~~la~~~~-dg~i~vw~~~~-~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~s~-d---------~~i~iwd~~~~  208 (498)
                      ++.+++.|+. ...+.+||..+ ........... ..+..-..+.+  ++++++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            6677777764 34688999863 11222221111 11111222223  5677777765 2         46889999888


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------------------------------
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------------------------  255 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---------------------------------  255 (498)
                      +.........         ....    ...++.  .++++++.|+.+                                 
T Consensus        97 ~W~~~~~~~p---------~~r~----~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (357)
T 2uvk_A           97 SWVKLMSHAP---------MGMA----GHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA  161 (357)
T ss_dssp             EEEECSCCCS---------SCCS----SEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred             cEEECCCCCC---------cccc----cceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence            7655443320         0001    122222  467778888754                                 


Q ss_pred             ------CeEEEEECCCCeeeEEEecc-CCCe-eEEEEeCCCCCEEEEeeC------CCeEEEEcC
Q 010883          256 ------DCIYVYDLEANKLSLRILAH-TSDV-NTVCFGDESGHLIYSGSD------DNLCKVWDR  306 (498)
Q Consensus       256 ------g~i~vwd~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~~l~s~s~------dg~i~vwd~  306 (498)
                            ..+.+||..+.+....-... .... .+++..  ++.+++.|+.      ...+.+||+
T Consensus       162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence                  57999999887654332111 1111 334432  4667777664      235677776

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.23  E-value=0.026  Score=51.08  Aligned_cols=148  Identities=13%  Similarity=0.108  Sum_probs=75.1

Q ss_pred             CCCCCeEEEEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC----C-
Q 010883          185 SPDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----D-  255 (498)
Q Consensus       185 sp~~~~l~~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~----d-  255 (498)
                      .-++.+++.|+.+    ..+.+||..+.+.......+...          .+|    ..+.+  ++..++.|+.    + 
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~   85 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR----------SGL----AGCVV--GGLLYAVGGRNNSPDG   85 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC----------BSC----EEEEE--TTEEEEECCEEEETTE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc----------ccc----eEEEE--CCEEEEECCCcCCCCC
Confidence            3356677777642    36889999888765553322211          112    11222  5667777765    2 


Q ss_pred             ----CeEEEEECCCCeeeEEEecc-CCCeeEEEEeCCCCCEEEEeeCC-----CeEEEEcCccccCCCceeEEecccccc
Q 010883          256 ----DCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEG  325 (498)
Q Consensus       256 ----g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~  325 (498)
                          ..+.+||+.+.+....-... ...-.+++.  .++.+++.|+.+     ..+.+||+...  ....+..+......
T Consensus        86 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~  161 (308)
T 1zgk_A           86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIG  161 (308)
T ss_dssp             EEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBS
T ss_pred             CeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccc
Confidence                45889999887643221111 111122232  246677777643     35778887521  11111111111112


Q ss_pred             EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 010883          326 ITFIDSRGDGRYLISNGKD-----QAIKLWDIRK  354 (498)
Q Consensus       326 v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~  354 (498)
                      ...+.+  ++++++.|+.+     ..+.+||+.+
T Consensus       162 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          162 VGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             eEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence            222223  56677777654     3477788765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.20  E-value=0.13  Score=47.35  Aligned_cols=252  Identities=14%  Similarity=0.079  Sum_probs=122.4

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS  254 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~  254 (498)
                      ....++|.|+|+++ ++..++.|++++. +++ .....+....           ........|+++|+   +..|.++..
T Consensus        30 ~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~-~~~~~~~v~~-----------~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           30 VPWSIAPLGGGRYL-VTERPGRLVLISP-SGK-KLVASFDVAN-----------VGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             CEEEEEEEETTEEE-EEETTTEEEEECS-SCE-EEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCc-eEeeccceee-----------cCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            47789999999854 4566799999873 443 2211111000           01125789999997   455555443


Q ss_pred             ----C----CeEEEEECCCC--e-----ee-EEEecc-CCCeeEEEEeCCCCCEEEEeeC-------------CCeEEEE
Q 010883          255 ----D----DCIYVYDLEAN--K-----LS-LRILAH-TSDVNTVCFGDESGHLIYSGSD-------------DNLCKVW  304 (498)
Q Consensus       255 ----d----g~i~vwd~~~~--~-----~~-~~~~~~-~~~v~~~~~~~~~~~~l~s~s~-------------dg~i~vw  304 (498)
                          +    +.|..|+....  .     .+ ..+... ......|+|. +++.++++.+.             .|.|.-+
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri  174 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDGMLYITTGDAADPRLAQDLSSLAGKILRV  174 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence                2    56888887654  1     11 112211 1134678997 67877666432             2456655


Q ss_pred             cCccccCCC----ceeEEeccccccEEEEEEcC-CCCEEEEEeCCCc---EEEEeCCCCCCccccccCcccccccceeec
Q 010883          305 DRRCLNVKG----KPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQA---IKLWDIRKMSSNASCNLGFRSYEWDYRWMD  376 (498)
Q Consensus       305 d~~~~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  376 (498)
                      +....-...    .......++. ....++|+| ++.++++-.....   |.+..  ...          ...|+...-.
T Consensus       175 ~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~----------nyGwp~~~g~  241 (354)
T 3a9g_A          175 DEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGG----------NYGWPLATGK  241 (354)
T ss_dssp             CTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTC----------BCCTTTCCSC
T ss_pred             cCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCC----------cCCCCcccCC
Confidence            553110000    0111112332 345788999 6665554332221   32221  110          0111110000


Q ss_pred             CCcCcccccCCCCceEEEE-ccCceeEEEEEEEe--ccccC-CCCcEEEEEecCCeEEEEECCCC-cEE--EEe-ccCCC
Q 010883          377 YPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHF--SPVYS-TGQKYIYTGSHDSCVYVYDLVSG-EQV--AAL-KYHTS  448 (498)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~s-~~~~~l~~g~~dg~i~iwd~~~~-~~~--~~~-~~h~~  448 (498)
                      ....      ....++..+ ..+.   ....+.+  ...|. .+|.++++....+.|...++... +..  ..+ .....
T Consensus       242 ~~~~------~~~~p~~~~~~~~~---ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~  312 (354)
T 3a9g_A          242 AGRG------EFVDPVIDTGSETW---APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFG  312 (354)
T ss_dssp             CCCT------TSCCCSEECTTCCC---CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSC
T ss_pred             CCCC------CCcCCEeecCCCCc---CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCC
Confidence            0000      001122222 1111   1112222  11111 36777777777788999988753 332  222 22245


Q ss_pred             CeeeeEEcCCCCeEEEEe
Q 010883          449 PVRDCSWHPSQPMLVSSS  466 (498)
Q Consensus       449 ~v~~l~~sp~~~~l~s~~  466 (498)
                      .+.++++.|||.++++..
T Consensus       313 rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          313 RLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECTTSCEEEEEC
T ss_pred             CeeEEEECCCCcEEEEEe
Confidence            789999999998666654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.19  E-value=0.091  Score=47.63  Aligned_cols=183  Identities=14%  Similarity=0.146  Sum_probs=91.1

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----CC-------eEEEEECCCCceecc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SP-------IVHIVDVGSGTMESL  213 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----d~-------~i~iwd~~~~~~~~~  213 (498)
                      +++.|+.  .+.+||..++.-...........  ........++.+++.|+.    ++       .+.+||..+.+....
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPR--NHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCS--SEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCc--cceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            4444543  48899998874332211111111  122233457788888873    11       277889888776554


Q ss_pred             ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCeeeEEEeccCCCe--eEEEE
Q 010883          214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------DCIYVYDLEANKLSLRILAHTSDV--NTVCF  284 (498)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-------g~i~vwd~~~~~~~~~~~~~~~~v--~~~~~  284 (498)
                      ...+...          ..|.    .+.+  +++.++.|+.+       ..+.+||+.+.+.... .....+.  .+++.
T Consensus        94 ~~~p~~r----------~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~  156 (318)
T 2woz_A           94 PPLPSAR----------CLFG----LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS  156 (318)
T ss_dssp             SCBSSCB----------CSCE----EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE
T ss_pred             CCCCccc----------cccc----eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE
Confidence            3332211          1121    1222  56777777754       3588899988765432 1111111  12222


Q ss_pred             eCCCCCEEEEeeC------CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCC
Q 010883          285 GDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIR  353 (498)
Q Consensus       285 ~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~  353 (498)
                        .++.+++.|+.      -..+.+||+...  ....+..+.........+.+  ++++++.|+.+     ..+.+||+.
T Consensus       157 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  230 (318)
T 2woz_A          157 --HNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLK  230 (318)
T ss_dssp             --ETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETT
T ss_pred             --ECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECC
Confidence              34667777764      235888988621  11111111111111122222  56777777654     246678876


Q ss_pred             C
Q 010883          354 K  354 (498)
Q Consensus       354 ~  354 (498)
                      +
T Consensus       231 ~  231 (318)
T 2woz_A          231 T  231 (318)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.19  E-value=0.046  Score=50.17  Aligned_cols=207  Identities=15%  Similarity=0.193  Sum_probs=105.9

Q ss_pred             cEEEEEEcCCCCEEEEE------------eCCCeEEEEECCCC--ee-eEEEec-----cCCCeeEEEEeCC-CCC--EE
Q 010883          236 GIFSLKFSTDGRELVAG------------SSDDCIYVYDLEAN--KL-SLRILA-----HTSDVNTVCFGDE-SGH--LI  292 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g------------~~dg~i~vwd~~~~--~~-~~~~~~-----~~~~v~~~~~~~~-~~~--~l  292 (498)
                      ...++...|+|..++++            ..+|.|.++|..+.  +. ...+.+     ..-....+.+.+. ++.  ++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            35567778888654444            16899999999742  22 112222     2235667776532 333  44


Q ss_pred             EEeeC--CCeEEEEcCccccCCCceeEEeccc-cccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCCCccccccCcc
Q 010883          293 YSGSD--DNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       293 ~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                      ++-..  +..|.+|++.........+..+.+. -...+.+.+.++|.+.++...   |.....++.-.            
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~------------  198 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL------------  198 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT------------
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc------------
Confidence            44333  5678888876322112233333332 235788889888887766531   10000000000            


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCce--eEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCC-CcE--E
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVS-GEQ--V  440 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~-~~~--~  440 (498)
                                -.+         ...+..+.....  ...-......++||||++.|+.+. ..+.|+.|++.. ++.  .
T Consensus       199 ----------~~~---------~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~  259 (355)
T 3sre_A          199 ----------GLA---------WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL  259 (355)
T ss_dssp             ----------TCC---------CEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             ----------cCC---------ccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC
Confidence                      000         011111111100  001111223457888998887775 478999999863 332  2


Q ss_pred             EEeccCCCCeeeeEEcC-CCCeEEEEeCCC-cEEEe
Q 010883          441 AALKYHTSPVRDCSWHP-SQPMLVSSSWDG-DVVRW  474 (498)
Q Consensus       441 ~~~~~h~~~v~~l~~sp-~~~~l~s~~~Dg-~i~iw  474 (498)
                      ..+ ...+..-.+++.+ +|.+.+++..+| .|..|
T Consensus       260 ~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~  294 (355)
T 3sre_A          260 RVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFY  294 (355)
T ss_dssp             EEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSC
T ss_pred             EEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEE
Confidence            233 2245667889999 598888776553 33334

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.00  E-value=0.092  Score=47.59  Aligned_cols=134  Identities=12%  Similarity=0.063  Sum_probs=64.8

Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCe
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DD-------CIYVYDLEANK  267 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~----dg-------~i~vwd~~~~~  267 (498)
                      .+.+||..+++... ........              .........++..++.|+.    ++       .+.+||..+.+
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~~~--------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQIP--------------RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTTSC--------------SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred             ceEEECCCCCceec-ccCCccCC--------------ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence            48899998887644 11110000              1112223457778888873    11       27888988876


Q ss_pred             eeEEEeccC--CCeeEEEEeCCCCCEEEEeeCC-------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE
Q 010883          268 LSLRILAHT--SDVNTVCFGDESGHLIYSGSDD-------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL  338 (498)
Q Consensus       268 ~~~~~~~~~--~~v~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  338 (498)
                      ... +....  ..-.+++..  ++.+++.|+.+       ..+.+||+...  ....+..+......-..+.  .+++++
T Consensus        90 W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~--~~~~iy  162 (318)
T 2woz_A           90 WVG-LPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGHNVIS--HNGMIY  162 (318)
T ss_dssp             EEE-CSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESCEEEE--ETTEEE
T ss_pred             EEE-CCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCcccccEEEE--ECCEEE
Confidence            532 21111  111223332  46677777754       24777887521  1111111111111111222  356666


Q ss_pred             EEEeCC------CcEEEEeCCC
Q 010883          339 ISNGKD------QAIKLWDIRK  354 (498)
Q Consensus       339 ~s~~~d------g~i~iwd~~~  354 (498)
                      +.|+.+      ..+.+||+.+
T Consensus       163 v~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          163 CLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             EECCEESSSCBCCCEEEEETTT
T ss_pred             EEcCCCCCCCccceEEEEcCCC
Confidence            776642      3478888776

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.83  E-value=0.32  Score=45.34  Aligned_cols=198  Identities=10%  Similarity=0.109  Sum_probs=125.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE
Q 010883          238 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG  317 (498)
Q Consensus       238 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  317 (498)
                      -+.-.+|..+.||.-. ...+.|+|+++...+....- ..+|.-=.|.  +.+.|+-.+ +..|+-|++..   ...+..
T Consensus        69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~---~s~P~k  140 (494)
T 1bpo_A           69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVK  140 (494)
T ss_dssp             SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEE--ETTEEEEEC-SSEEEEEESSS---SCCCEE
T ss_pred             ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEec--CCCeEEEEc-CCeeEEecccC---CCCchh
Confidence            3456788888777665 67899999999888777643 4467777886  334555444 45899999863   345666


Q ss_pred             Eecccc----ccEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          318 VLMGHL----EGITFIDSRGDGRYLISNG-------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       318 ~~~~~~----~~v~~l~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                      .+..|.    ..|.....+++.++++..+       -.|.+.+|..+.                                
T Consensus       141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--------------------------------  188 (494)
T 1bpo_A          141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--------------------------------  188 (494)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--------------------------------
T ss_pred             heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--------------------------------
Confidence            665553    3577778899999877443       246788888876                                


Q ss_pred             CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCCC--------cEEEEec----cCCCCee
Q 010883          387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSG--------EQVAALK----YHTSPVR  451 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~--------~~~~~~~----~h~~~v~  451 (498)
                         +.-..+++|...-.  .....- ......+++.+..   .+.++|.++...        +....+.    .-.+-..
T Consensus       189 ---~~sQ~ieGhaa~F~--~~~~~g-~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv  262 (494)
T 1bpo_A          189 ---KVSQPIEGHAASFA--QFKMEG-NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (494)
T ss_dssp             ---CCEEEECCSEEEEE--EEECTT-CSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred             ---cccchheeeeeeeE--EEecCC-CCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence               34445555542111  111100 0011223444433   278999998543        1122221    1234456


Q ss_pred             eeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          452 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       452 ~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      ++..++....+..-+.-|.|++||+.++..
T Consensus       263 amqvs~kygviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEecccCCEEEEEecCceEEEEeccccee
Confidence            788888888888889999999999988753

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.69  E-value=0.032  Score=51.83  Aligned_cols=122  Identities=16%  Similarity=0.250  Sum_probs=78.4

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------------EEEEEeecC---CCceeEEEEEeCCC---CCeEEEE
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAK---SLRWTVTDTSLSPD---QRHLVYA  194 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~------------~~~~~~~~~---~~~~~v~~~~~sp~---~~~l~~~  194 (498)
                      .|..+..||+|++||..+. ..|.|-.+..+.            .........   ....+|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            6788999999999999864 578888887331            111111110   12457999999994   4689999


Q ss_pred             ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEE
Q 010883          195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVY  261 (498)
Q Consensus       195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vw  261 (498)
                      ..|+.|++||+........ .+.....  .|.   .......|.+++|.+++-.|.+.+  ..|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~--~fg---~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNN--SFG---LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCS--EEE---SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhcccc--ccC---CCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999986332111 1111100  011   112224799999999887777755  77887754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.68  E-value=0.48  Score=45.31  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=61.5

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecC-----CCceeEEEEEeCCC---CCeEEEEEC-------
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSPD---QRHLVYASM-------  196 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~---~~~l~~~s~-------  196 (498)
                      ..-+.++|.|||+++++-...+.|++++..++..........     ........|+|+|+   +..|.++..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            345799999999977776444578888865553221111111     12446789999995   444444332       


Q ss_pred             ------CCeEEEEECCCC--ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883          197 ------SPIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  253 (498)
Q Consensus       197 ------d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~  253 (498)
                            ...|.-++...+  .......+   ...+  .  ....|  ....|+|.|||.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i---~~~~--p--~~~~H--~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDL---LAGL--P--SSKDH--QSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEE---EEEE--C--CCSSC--CEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEE---EEcC--C--CCCCC--CCCeEeECCCCeEEEEEC
Confidence                  134555554332  11100000   0000  0  01123  468899999998777654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.61  E-value=0.37  Score=43.17  Aligned_cols=173  Identities=11%  Similarity=0.070  Sum_probs=95.2

Q ss_pred             EcCCCCEEEEEE--CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC--------------CeEEE
Q 010883          139 FSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHI  202 (498)
Q Consensus       139 ~s~dg~~la~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d--------------~~i~i  202 (498)
                      |+++|.+++...  .++.|...+.+... ..++..       -.+--+++++.+|..+...              ..|+.
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~-------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~   92 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN-------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR   92 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE-------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC-------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence            345777777664  25666666665432 222211       1123457899999887653              36777


Q ss_pred             EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCeeeEEEeccCCC
Q 010883          203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----SDDCIYVYDLEANKLSLRILAHTSD  278 (498)
Q Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~  278 (498)
                      .++..++...+...                     .+..|+++++.|+-..    .+..|+..++.... ..++..+.. 
T Consensus        93 i~~dg~~~~~l~~~---------------------~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~-  149 (302)
T 3s25_A           93 IKRNGHGSTVLDPD---------------------PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL-  149 (302)
T ss_dssp             EETTSCCCEEEECS---------------------CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-
T ss_pred             EeCCCCcceEeecC---------------------CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-
Confidence            77777654332211                     1236777888888775    34567777776443 344544433 


Q ss_pred             eeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC--cEEEEeCCC
Q 010883          279 VNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRK  354 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg--~i~iwd~~~  354 (498)
                         ..++ +.++.|+-.+ ....|.+-++.    ... ...+..  +... ..+.|++.+|+-....+  .|..-++..
T Consensus       150 ---~~~~-~~g~~iy~t~~g~~~Iy~~~l~----g~~-~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          150 ---FTCN-TSDRYFYYNNPKNGQLYRYDTA----SQS-EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             ---CCSE-EETTEEEEECTTTCCEEEEETT----TTE-EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             ---eEee-EECCEEEEEeCCCceEEEEECC----CCC-EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence               3344 3455555444 36778887774    222 223221  2222 33568888887655433  455555544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.59  E-value=0.091  Score=48.52  Aligned_cols=51  Identities=14%  Similarity=0.054  Sum_probs=26.4

Q ss_pred             eEEEEECCCCc--EEEEeccCCCCeeeeEEcCCCCeEEEEeCCC------cEEEecCCCCC
Q 010883          428 CVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG------DVVRWEFPGNG  480 (498)
Q Consensus       428 ~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg------~i~iw~~~~~~  480 (498)
                      .+.+||+.+.+  .+..+......  ..+...++++++.||.++      .|.++++.+++
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            57889987654  33333322222  222334778888888653      35555776554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.56  E-value=0.31  Score=43.70  Aligned_cols=134  Identities=9%  Similarity=0.121  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEEC--CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-------
Q 010883          185 SPDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------  255 (498)
Q Consensus       185 sp~~~~l~~~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-------  255 (498)
                      ++++.+|.....  ++.|...+.+......+..                     -.+--++++|.+|+.....       
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~---------------------~~~~~i~~~g~~Iyy~~~~~~~~~~~   80 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN---------------------DTAMYINADKNYVYYVRNNNQKITSQ   80 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE---------------------EEEEEEEECSSEEEEEEECC------
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC---------------------CceeeEEEcCCEEEEEECCCCccccc
Confidence            356666666542  4566666665544322211                     1233457788888777543       


Q ss_pred             -------CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee--CCC--eEEEEcCccccCCCceeEEeccccc
Q 010883          256 -------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDN--LCKVWDRRCLNVKGKPAGVLMGHLE  324 (498)
Q Consensus       256 -------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg--~i~vwd~~~~~~~~~~~~~~~~~~~  324 (498)
                             ..|+..++...+. ..+..  ..  +..|+ +.++.|+-..  .++  .|..-++.     +.....+..+..
T Consensus        81 ~~~~~n~~~Iy~i~~dg~~~-~~l~~--~~--~~~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~d-----Gs~~~~lt~~~~  149 (302)
T 3s25_A           81 TFFSYDRNSLCRIKRNGHGS-TVLDP--DP--CIYAS-LIGNYIYYLHYDTQTATSLYRIRID-----GEEKKKIKNHYL  149 (302)
T ss_dssp             CCSSCCSEEEEEEETTSCCC-EEEEC--SC--EEEEE-EETTEEEEEEESSSSCEEEEEEETT-----SCCCEEEESSCC
T ss_pred             ceeccCCCeEEEEeCCCCcc-eEeec--CC--ccEEE-EeCCEEEEEeecCCCCceEEEEECC-----CCCeEEEeCCCc
Confidence                   4688888877653 22322  12  22555 4566666655  344  45555553     333344443322


Q ss_pred             cEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010883          325 GITFIDSRGDGRYLISNGK-DQAIKLWDIRK  354 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~  354 (498)
                          ..++++++.|+-.+. ...|.+.++..
T Consensus       150 ----~~~~~~g~~iy~t~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          150 ----FTCNTSDRYFYYNNPKNGQLYRYDTAS  176 (302)
T ss_dssp             ----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred             ----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence                456778888875554 56777777765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.43  Score=43.34  Aligned_cols=117  Identities=15%  Similarity=0.160  Sum_probs=70.1

Q ss_pred             CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCe
Q 010883          189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANK  267 (498)
Q Consensus       189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~  267 (498)
                      ..+++++.||.|.-+|..+|+.............+...     +.       ....++..++.. +.||.|+.++..+|.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-----~~-------~~~~~~~~~vv~p~~dG~l~a~~~~~G~   78 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-----EP-------SRLETYETLIIEPFGDGNIYYFNAHQGL   78 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-----CS-------CTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-----CC-------ccccCCcEEEEEECCCCEEEEEECCCCc
Confidence            46788999999999999999887766544101000000     00       000133333333 579999999998886


Q ss_pred             eeEEEec----cCCCeeE---EEEeC----CCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc
Q 010883          268 LSLRILA----HTSDVNT---VCFGD----ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG  321 (498)
Q Consensus       268 ~~~~~~~----~~~~v~~---~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  321 (498)
                      ....+..    ...++..   ....+    ..+..+++|+.+|.+...|++    +++.+..+..
T Consensus        79 ~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~----tG~~~W~~~~  139 (339)
T 2be1_A           79 QKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML----NGEIISAFGP  139 (339)
T ss_dssp             EEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT----TCCEEEEEST
T ss_pred             EEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC----CCcEEEEEec
Confidence            5544331    1222221   00000    145688999999999999998    7888877753

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.53  E-value=0.62  Score=44.84  Aligned_cols=94  Identities=13%  Similarity=0.177  Sum_probs=60.4

Q ss_pred             EEEEECCCeEEEEECCCCeEEEEEeecCCCc----------------------eeE--EEEEeC---CCCCeEEEEEC-C
Q 010883          146 FVAGFQASQIRIYDVERGWKIQKDILAKSLR----------------------WTV--TDTSLS---PDQRHLVYASM-S  197 (498)
Q Consensus       146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v--~~~~~s---p~~~~l~~~s~-d  197 (498)
                      |.+|+..|.|+|+-+.++..+..+.......                      +..  ..+++.   .||++|..-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            6678889999999999987766543322110                      000  112222   26788888764 5


Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEc--CCCCEEEEEeC
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSS  254 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~g~~l~~g~~  254 (498)
                      ..|...+++.-++..+..++...               .+..++|-  |+..++++++.
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~---------------~~Hg~~~~~~p~T~yv~~~~e  196 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQ---------------AIHGLRLQKVPHTKYVFANAE  196 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCS---------------CEEEEEECCSSBCCEEEEEEC
T ss_pred             cceEEEECCcEeeceeEeCCCCc---------------CcccccccccCCccEEEecce
Confidence            67888898888777766655433               56667775  56667777664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.31  E-value=0.37  Score=40.41  Aligned_cols=157  Identities=13%  Similarity=0.070  Sum_probs=84.6

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      .+.+++|+|+|.+.++  .+|.+.-.+..+.............        ...+.. ...++.|.|+|.+.++  .||.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I--------G~~Gw~-~F~a~~fD~~G~LYav--~dG~  108 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI--------GNGGWN-QFQFLFFDPNGYLYAV--SKDK  108 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE--------ECSCGG-GCSEEEECTTSCEEEE--ETTE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe--------cccccc-cceEEEECCCCCEEEe--CCCE
Confidence            5779999999986666  6777666665443222211111000        000111 1467899999986666  5699


Q ss_pred             EEEEECCCCeee------EEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC---ceeEEeccccccEE
Q 010883          258 IYVYDLEANKLS------LRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG---KPAGVLMGHLEGIT  327 (498)
Q Consensus       258 i~vwd~~~~~~~------~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~v~  327 (498)
                      |+-++-.+....      ..+- .--..+..|.+. +++.+.++.  |+.++-+.........   .....-...-...+
T Consensus       109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr  185 (236)
T 1tl2_A          109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK  185 (236)
T ss_dssp             EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred             EEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence            988876432211      1111 112467888886 788777666  7775443322100000   01111112233455


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          328 FIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .+.|.+++.+.++.  ++  ++|....
T Consensus       186 ~l~f~~~G~l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          186 FLFFSSVGTLFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             EEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             EEEECCCCcEEEEe--CC--eEEecCC
Confidence            57799999877766  66  4554433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.28  E-value=0.22  Score=41.77  Aligned_cols=150  Identities=13%  Similarity=0.012  Sum_probs=80.2

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      .+..++|+|+|.+.++  .+|.+.-.+..++.     .....+-..+... -.++.|.|+|.+.++  .||.|.-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5669999999997777  67765555543310     0011111111111 367899999998777  569888777533


Q ss_pred             Cceecc-ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeEEEe-ccCCCe
Q 010883          208 GTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK------LSLRIL-AHTSDV  279 (498)
Q Consensus       208 ~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~------~~~~~~-~~~~~v  279 (498)
                      ...... ........          +-=..+..|.|.|+|.+.++.  |+.++-+...+..      ....+. ..-...
T Consensus       117 ~~~~~Wl~~a~~vg~----------~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~y  184 (236)
T 1tl2_A          117 SDTDNWIARATEVGS----------GGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTF  184 (236)
T ss_dssp             STTCCHHHHSEEEEC----------SSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGE
T ss_pred             CCCCceeccccEecc----------CCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceE
Confidence            221111 11011000          001257899999999866665  7876544333221      111221 222233


Q ss_pred             eEEEEeCCCCCEEEEeeCCCeEE
Q 010883          280 NTVCFGDESGHLIYSGSDDNLCK  302 (498)
Q Consensus       280 ~~~~~~~~~~~~l~s~s~dg~i~  302 (498)
                      +.+.|. +++.+.++.  +|.+.
T Consensus       185 r~l~f~-~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          185 KFLFFS-SVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEEEC-TTSCEEEEE--TTEEE
T ss_pred             EEEEEC-CCCcEEEEe--CCeEE
Confidence            445665 777766655  66443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.08  E-value=0.4  Score=48.76  Aligned_cols=199  Identities=16%  Similarity=0.099  Sum_probs=106.0

Q ss_pred             CCCCEEEEEECC----CeEEEEECCCCeEEEEEee-----cCCCceeEEEEEeCCCCCeEEEEECC------CeEEEEEC
Q 010883          141 ADGSLFVAGFQA----SQIRIYDVERGWKIQKDIL-----AKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDV  205 (498)
Q Consensus       141 ~dg~~la~~~~d----g~i~vw~~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~s~d------~~i~iwd~  205 (498)
                      .++.+++.|+.+    ..+.+||..++.-......     ....+..-..+.+..++++++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            567788888753    4588999887632221101     11111122233333377788887753      35889999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEe-----ccCCC
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRIL-----AHTSD  278 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg--~i~vwd~~~~~~~~~~~-----~~~~~  278 (498)
                      .+.+.......+...          .+|     +++...+++.++.|+.++  .+.+||..+.+....-.     .....
T Consensus       476 ~t~~W~~~~~~p~~R----------~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~  540 (695)
T 2zwa_A          476 KTREWSMIKSLSHTR----------FRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLV  540 (695)
T ss_dssp             TTTEEEECCCCSBCC----------BSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCB
T ss_pred             CCCcEEECCCCCCCc----------ccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccc
Confidence            887765554332211          112     223323788888887654  69999999876533211     11122


Q ss_pred             eeEEEEeCCCCCEEEEeeC--C-----CeEEEEcCccccC----CCceeEEec-cccccEEEEEEcCCCCEEEEEeCC--
Q 010883          279 VNTVCFGDESGHLIYSGSD--D-----NLCKVWDRRCLNV----KGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKD--  344 (498)
Q Consensus       279 v~~~~~~~~~~~~l~s~s~--d-----g~i~vwd~~~~~~----~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d--  344 (498)
                      ..++.+....+.+++.|+.  +     ..+.+||+.....    ....+.... ....... +....++++++.|+.+  
T Consensus       541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~  619 (695)
T 2zwa_A          541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPS  619 (695)
T ss_dssp             SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSS
T ss_pred             eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCC
Confidence            2335555333667777775  2     4588899863210    011111111 1111122 2233336777777743  


Q ss_pred             ------CcEEEEeCCCC
Q 010883          345 ------QAIKLWDIRKM  355 (498)
Q Consensus       345 ------g~i~iwd~~~~  355 (498)
                            ..+.+||+.+.
T Consensus       620 ~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          620 GLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             CCCCTTTSEEEEETTTT
T ss_pred             CCCCCCCeEEEEECCCC
Confidence                  45888888763

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.46  Score=43.12  Aligned_cols=193  Identities=9%  Similarity=0.029  Sum_probs=101.2

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEe--CCCCCeEEEE--ECCCeEEEEECCCCceecccccccc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEI  219 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~--s~d~~i~iwd~~~~~~~~~~~~~~~  219 (498)
                      .+++.++.||.|.-.|..+|+...+....  ...++....-  .+.+..++.+  +.||.|..++..+|...........
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            46888999999999999999777765433  1112222110  1112233433  5799999999988855433332221


Q ss_pred             ccCccccccCCCCceecEEE---EEE-----cCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC--CC-----eeEEEE
Q 010883          220 HDGLDFSAADDGGYSFGIFS---LKF-----STDGRELVAGSSDDCIYVYDLEANKLSLRILAHT--SD-----VNTVCF  284 (498)
Q Consensus       220 ~~~~~~~~~~~~~h~~~i~~---~~~-----s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~-----v~~~~~  284 (498)
                      ...            .++..   ...     +..+..+++|+.+|.+...|+.+|+.+..+....  ..     ..|...
T Consensus        89 v~~------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~  156 (339)
T 2be1_A           89 VST------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE  156 (339)
T ss_dssp             HTT------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------
T ss_pred             eec------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccc
Confidence            110            01111   000     0134478999999999999999999988875321  10     111111


Q ss_pred             e----CCCCCEEEEeeCCCeEEEEcCccccCCCc----eeEEecccccc--E-EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          285 G----DESGHLIYSGSDDNLCKVWDRRCLNVKGK----PAGVLMGHLEG--I-TFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       285 ~----~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~--v-~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      .    +..+..++.+..+..+.+.+ +    .+.    ...........  + ..-..+.|+.+ +.++.||.|..+|..
T Consensus       157 ~d~~~d~~~~~v~ig~~~y~v~~~~-~----sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~  230 (339)
T 2be1_A          157 EKIKLQECENMIVIGKTIFELGIHS-Y----DGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLD  230 (339)
T ss_dssp             --------CCEEEEEEEEEECEECC-T----TSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECST
T ss_pred             cccccccCCCeEEEecceEEEEEEC-C----CCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECC
Confidence            0    01235677777777777666 2    221    00111110000  0 00001224555 447888989888887


Q ss_pred             CCC
Q 010883          354 KMS  356 (498)
Q Consensus       354 ~~~  356 (498)
                      ++.
T Consensus       231 ~G~  233 (339)
T 2be1_A          231 FRI  233 (339)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.01  E-value=0.36  Score=44.07  Aligned_cols=117  Identities=14%  Similarity=0.074  Sum_probs=64.5

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEeCCC---CCeEEEE-E--CCCeEE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPD---QRHLVYA-S--MSPIVH  201 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~---~~~l~~~-s--~d~~i~  201 (498)
                      -..-+.++|.|||+++++--..|.|++++..++........   ..........|+|+|+   +..|... +  .++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            44568999999999877765589999998765543211111   1122446899999996   3334332 2  345566


Q ss_pred             EEECCCCcee--ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883          202 IVDVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  253 (498)
Q Consensus       202 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~  253 (498)
                      -|.+..+...  ...........+.    ....|  ....|+|.|||.+.++.+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p----~~~~H--~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIP----KGVIH--NGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEEC----CCSSC--CCCCEEECTTSCEEEECB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCC----CCCCc--cCccccCCCCCCEEEEEC
Confidence            6666542210  0000000000000    01234  345789999998766654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.97  E-value=0.92  Score=41.35  Aligned_cols=254  Identities=15%  Similarity=0.109  Sum_probs=123.5

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEE-e
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG-S  253 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g-~  253 (498)
                      ....|+|.|+|+++++--..|.|++++..+++......+....          .........|+++|+   +..|.+. +
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~----------~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS----------PSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC----------CBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee----------ecCCCCceeeEeccccccCCEEEEEEe
Confidence            4778999999997766554899999987665543222111100          011236889999995   3445443 2


Q ss_pred             --CCCeEEEEECCCC----------eeeE-EEec-cCCCeeEEEEeCCCCCEEEEeeC-------------CCeEEEEcC
Q 010883          254 --SDDCIYVYDLEAN----------KLSL-RILA-HTSDVNTVCFGDESGHLIYSGSD-------------DNLCKVWDR  306 (498)
Q Consensus       254 --~dg~i~vwd~~~~----------~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~  306 (498)
                        .++.|.-|.+..+          +.+. .+.. ..-....|.|. +++.+.++.+.             .|.|.-.+.
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence              3456666766541          1111 1221 11134568997 67777776542             345554554


Q ss_pred             ccccCCC----ceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883          307 RCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA  381 (498)
Q Consensus       307 ~~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (498)
                      ...-...    .....-.+|. ....++|+|+|.++++-. .|+.=.|--+...          ...-|....-.  .. 
T Consensus       182 dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G----------~nyGwP~~~g~--~~-  247 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPG----------DNYGWPEAEGK--GG-  247 (347)
T ss_dssp             TSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTT----------CBCCTTTCCSS--CC-
T ss_pred             CCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCC----------CEecCCcccCC--CC-
Confidence            3110000    0111122343 345788999877655432 2322222222211          11112111000  00 


Q ss_pred             ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE----EEEeccCCCCeeeeEEcC
Q 010883          382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHP  457 (498)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~sp  457 (498)
                         ......++..+..+..  ....+.+.     +|.++...-..+.|....+.....    ...+.+..+.+.+++..|
T Consensus       248 ---~~~~~~P~~~~~~~~~--ap~G~~~~-----~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p  317 (347)
T 3das_A          248 ---GSGFHDPVAQWSTDEA--SPSGIAYA-----EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG  317 (347)
T ss_dssp             ---CTTCCCCSEEECTTTC--CEEEEEEE-----TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE
T ss_pred             ---CccccCCcEecCCCCC--CCcceEEE-----cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC
Confidence               0011233444433210  11112121     355555555566676666654432    233444456889999999


Q ss_pred             CCCeEEEEe
Q 010883          458 SQPMLVSSS  466 (498)
Q Consensus       458 ~~~~l~s~~  466 (498)
                      ||.++++.+
T Consensus       318 DG~lyv~td  326 (347)
T 3das_A          318 GDKLWLVTS  326 (347)
T ss_dssp             TTEEEEEEC
T ss_pred             CCcEEEEEc
Confidence            998666554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.71  E-value=0.75  Score=43.93  Aligned_cols=110  Identities=15%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS  254 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~  254 (498)
                      ....|+|.|+|+++++-...+.|.+++..++.......+.....        ..........|+|+|+   +..|.+...
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~--------~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN--------DADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC--------CTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc--------ccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            46789999999977665444578888766555432222211100        0001236889999995   555554432


Q ss_pred             -------------CCeEEEEECCCC--e-----eeEE-Eec-cCCCeeEEEEeCCCCCEEEEee
Q 010883          255 -------------DDCIYVYDLEAN--K-----LSLR-ILA-HTSDVNTVCFGDESGHLIYSGS  296 (498)
Q Consensus       255 -------------dg~i~vwd~~~~--~-----~~~~-~~~-~~~~v~~~~~~~~~~~~l~s~s  296 (498)
                                   ...|.-+++..+  +     .+.. +.. ..-....|+|. +++.+.++.+
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~G  162 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIG  162 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEEC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEEC
Confidence                         235666665332  1     1111 211 11246889997 6777776644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.70  E-value=0.55  Score=50.70  Aligned_cols=219  Identities=11%  Similarity=0.110  Sum_probs=125.2

Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS  277 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  277 (498)
                      ..|.|.|+..+.......+                   ..-+.-.+|..+.||.-. ..++.|+|+++...+....- ..
T Consensus        48 ~~vvIidl~~~~~~~rrpi-------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e  106 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPI-------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD  106 (1630)
T ss_pred             ceEEEEECCCCCCcccccc-------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CC
Confidence            3688888877654322221                   233455677777666654 67899999998877665533 44


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc----cccEEEEEEcCCCCEEEEEe-------CCCc
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGITFIDSRGDGRYLISNG-------KDQA  346 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~~-------~dg~  346 (498)
                      +|.-=.|.  +.+.|+..+ +..|+.|++..   ...|+..+..|    ...|..-..+++.++++..+       ..|.
T Consensus       107 ~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~  180 (1630)
T 1xi4_A          107 DVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  180 (1630)
T ss_pred             CceEEEec--CCCeeEEEc-CCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence            67777885  334444443 45899999962   33455555444    35677777888888877443       3477


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-  425 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-  425 (498)
                      +.+|......+                                   ..+.||...-......   ...+...+++.+.. 
T Consensus       181 mQLyS~er~~s-----------------------------------Q~iegha~~F~~~~~~---~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          181 MQLYSVDRKVS-----------------------------------QPIEGHAASFAQFKME---GNAEESTLFCFAVRG  222 (1630)
T ss_pred             eeeeecccccc-----------------------------------hhhhHhHhhhheeccC---CCCCCceEEEEEEec
Confidence            88888776332                                   2222332110000000   00011222222222 


Q ss_pred             --CCeEEEEECCCC---cE------EEEec---cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          426 --DSCVYVYDLVSG---EQ------VAALK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       426 --dg~i~iwd~~~~---~~------~~~~~---~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                        .+.++|.++...   ..      +..+-   .-.+-..++..++....+...+.-|.|+++|+.++..
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence              267888887542   11      11111   1123345677787777888888899999999988754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.40  E-value=2.9  Score=42.98  Aligned_cols=194  Identities=14%  Similarity=0.178  Sum_probs=110.3

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      ...|.++.-..+|. |..|+.+| +..||..++. ...  ........|.++.. .++ .|..++.+ -+..++..+++.
T Consensus        62 ~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~-f~~--~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~  133 (758)
T 3ott_A           62 NTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADR-YEQ--PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL  133 (758)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTE-EEEEETTTTE-ECC--CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE
T ss_pred             CceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCE-EEC--cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE
Confidence            45689988887774 55566665 7899988762 211  11111224766654 344 45556655 578888877654


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-----CCCeeEEEEe
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFG  285 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~  285 (498)
                      ........   .+         ....|.++....+|.+ ..|+.+ -|..++..+++........     ...|.++...
T Consensus       134 ~~~~~~~~---~l---------~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  199 (758)
T 3ott_A          134 TSFDTRRN---GL---------PNNTIYSIIRTKDNQI-YVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED  199 (758)
T ss_dssp             EEECHHHH---CC---------SCSCEEEEEECTTCCE-EEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE
T ss_pred             EEeccCCC---Cc---------CCCeEEEEEEcCCCCE-EEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEE
Confidence            33211000   00         0125888888888874 445555 4888898776543211111     1247788764


Q ss_pred             CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                       .++..|..|+. +-+..+|..    ..............|.++....+|.+.+ |+.+ -+.+++..+
T Consensus       200 -~~~~~lWigt~-~Gl~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~  260 (758)
T 3ott_A          200 -TTRQCVWIGTE-GYLFQYFPS----TGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDT  260 (758)
T ss_dssp             -TTTTEEEEEEE-EEEEEEETT----TTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTT
T ss_pred             -CCCCEEEEEEC-CCCeEEcCC----CCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCC
Confidence             55555555554 457778865    3222111111234588888888887655 4444 578888765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.30  E-value=3.1  Score=42.74  Aligned_cols=197  Identities=9%  Similarity=-0.004  Sum_probs=108.7

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~  211 (498)
                      ..|.++...+++..|..|+. +-|..++..++... .....  ....|.++...++|.+.+ |+.+ -+.+++..++...
T Consensus       191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~  264 (758)
T 3ott_A          191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK-QTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQ  264 (758)
T ss_dssp             CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE-EEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCE
T ss_pred             ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE-eccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEE
Confidence            34888988888776555654 45888998776322 21111  123688888888777655 4444 5778887765443


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-------ccCCCeeEEEE
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCF  284 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~  284 (498)
                      ...........         -....|.++....+|. |..|+..| +.++... .. ...+.       .....|.++.-
T Consensus       265 ~~~~~~~~~~~---------l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~  331 (758)
T 3ott_A          265 HIIHDSRNIQS---------LTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFR  331 (758)
T ss_dssp             EECCCTTCTTS---------CSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEE
T ss_pred             EEEcCCCCcCc---------CCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEE
Confidence            22111100000         0122589998888886 66677667 5554332 21 11221       11245777776


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-------cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      . .++.+. .|+.+| +..++.....  ......+.       .....|.++.-..+|++.+ |+ ++-|..||..+
T Consensus       332 D-~~g~lW-iGt~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~  401 (758)
T 3ott_A          332 D-SKGFYW-FGGANG-LIRFTDPAGE--RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYAT  401 (758)
T ss_dssp             C-TTCCEE-EEETTE-EEEESCTTSS--CCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTT
T ss_pred             c-CCCCEE-EeeCCc-ceeecccccc--cceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCC
Confidence            3 556554 445555 5566643110  01111111       0124588888888887555 44 45688999875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.65  E-value=1.2  Score=45.35  Aligned_cols=156  Identities=15%  Similarity=0.194  Sum_probs=84.6

Q ss_pred             EEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC--eEEEEECCCCc
Q 010883          138 QFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGT  209 (498)
Q Consensus       138 ~~s~dg~~la~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~--~i~iwd~~~~~  209 (498)
                      .+..++++++.|+.+      ..+.+||..++. .............- +++...++++++.|+.++  .+.+||..+..
T Consensus       447 ~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~-W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~  524 (695)
T 2zwa_A          447 TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE-WSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI  524 (695)
T ss_dssp             EETTTTEEEEECCBSSTTCBCCCCEEEETTTTE-EEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred             EEccCCEEEEEcCCCCCCCccccEEEEeCCCCc-EEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence            333377888888754      357899988762 22211111111111 222324788888887654  69999999887


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeC--C-----CeEEEEECCCCee-----eEEEec--
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS--D-----DCIYVYDLEANKL-----SLRILA--  274 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~--d-----g~i~vwd~~~~~~-----~~~~~~--  274 (498)
                      ...........       ....+|    .++.+..+ ++.++.|+.  +     ..+.+||+.+.+.     ...+..  
T Consensus       525 W~~~~~~g~~p-------~~r~~~----~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p  593 (695)
T 2zwa_A          525 FKDVTPKDEFF-------QNSLVS----AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP  593 (695)
T ss_dssp             EEECCCSSGGG-------GSCCBS----CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG
T ss_pred             eEEccCCCCCC-------Ccccce----eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC
Confidence            65543311100       001112    23445554 667777765  2     4689999988772     122211  


Q ss_pred             -cCCCeeEEEEeCCCCCEEEEeeC--------CCeEEEEcCc
Q 010883          275 -HTSDVNTVCFGDESGHLIYSGSD--------DNLCKVWDRR  307 (498)
Q Consensus       275 -~~~~v~~~~~~~~~~~~l~s~s~--------dg~i~vwd~~  307 (498)
                       ....-.+++.. .++.+++.|+.        ...|.+||+.
T Consensus       594 ~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          594 LFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             GGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             CCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence             11111223332 33677777774        3468899986

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.01  E-value=5.3  Score=36.51  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             CCeeEEEEeCC------CCCEEEEeeCCCeEEEEcCccccCCCceeE--Ee-ccccccEEEEEEcCCCCEEEEEe-CCCc
Q 010883          277 SDVNTVCFGDE------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VL-MGHLEGITFIDSRGDGRYLISNG-KDQA  346 (498)
Q Consensus       277 ~~v~~~~~~~~------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~-~~~~~~v~~l~~~~~~~~l~s~~-~dg~  346 (498)
                      ..+..++|...      ++.++++.-..+.|...++.    .+....  .+ ......+..+++.|||.++++.. .+|.
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~  346 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN----GDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE  346 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE----TTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeC----CCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence            35677777521      36677776677788887775    222221  12 22335789999999998666533 3443


Q ss_pred             E
Q 010883          347 I  347 (498)
Q Consensus       347 i  347 (498)
                      |
T Consensus       347 I  347 (353)
T 2g8s_A          347 L  347 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.34  E-value=8.5  Score=33.80  Aligned_cols=183  Identities=13%  Similarity=0.023  Sum_probs=95.2

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  212 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~  212 (498)
                      .|..++...+-..++  . ||.|..|-......+..   .......|..++...+-  .+.-. +|.|..|-....-...
T Consensus        64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~---P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg  134 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV---PAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT  134 (282)
T ss_dssp             CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC---CGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS
T ss_pred             CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC---CcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC
Confidence            566666654433333  4 88898887654211111   11112357777664433  33334 8999999765422211


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI  292 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  292 (498)
                      ....                ....|..++...+.  .++-. ||.|+.|-......+..-......|..++..  ....+
T Consensus       135 ~~~~----------------~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G--~~hs~  193 (282)
T 3qhy_B          135 VPAE----------------AQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSL  193 (282)
T ss_dssp             CCGG----------------GGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred             CCcc----------------CCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEec--CCEEE
Confidence            1100                01146666654333  33334 7999999765432211111223567777764  33344


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      +.  .||.|..|-.......+.+.    .....|..++...... ++. . ||.|..|-...
T Consensus       194 al--~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~  246 (282)
T 3qhy_B          194 AL--KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR  246 (282)
T ss_dssp             EE--ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred             EE--ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence            44  59999999765222122121    1234577777654433 333 3 99999997655

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.68  E-value=2.3  Score=41.10  Aligned_cols=115  Identities=12%  Similarity=0.138  Sum_probs=67.3

Q ss_pred             EEEEEeCCCCCeEEEEEC-CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          179 VTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       179 v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      ...+.++|||+++++++. +.++.++++..-......++......+.-..    .-.-.....+|.++|....+..-|..
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~----e~GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP----ELGLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC----BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec----cCCCcccEEEECCCCceEeeeeecce
Confidence            456788999999998775 7899999987421100000000000000000    01115778999999965566668999


Q ss_pred             EEEEECCCC----------eeeEEEeccCCCeeEEEE----eCCCCCEEEEeeC
Q 010883          258 IYVYDLEAN----------KLSLRILAHTSDVNTVCF----GDESGHLIYSGSD  297 (498)
Q Consensus       258 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~----~~~~~~~l~s~s~  297 (498)
                      |.-|++...          ..+.++.-|-.+-...+-    ..+++++|++...
T Consensus       401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            999999653          345556555443222221    1367888888753

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.58  E-value=5.3  Score=38.06  Aligned_cols=118  Identities=14%  Similarity=0.017  Sum_probs=60.5

Q ss_pred             ceEEEEEcCCCC-EEEEEECCCeEEEEECCCCe---EEEEEe--ecC----CCceeEEEEEeCCC----CCeEEEEEC--
Q 010883          133 RAYVSQFSADGS-LFVAGFQASQIRIYDVERGW---KIQKDI--LAK----SLRWTVTDTSLSPD----QRHLVYASM--  196 (498)
Q Consensus       133 ~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~---~~~~~~--~~~----~~~~~v~~~~~sp~----~~~l~~~s~--  196 (498)
                      .-+.|+|.|||. .|+++...|.|++++.....   .+..+.  ...    ........|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            346899999996 45556688999999754321   111110  111    11346889999996    443333221  


Q ss_pred             C----------CeEEEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          197 S----------PIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       197 d----------~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      +          ..|.-|.+..+.  ..........   +... .....|  ....|+|.|||.+.++.+..+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i---~~~~-~~~~~H--~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVF---LEVA-ELHRKH--LGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEE---EEEE-ESSSSS--CEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEE---EEcC-CCCCcc--cCCcEeECCCCcEEEEeCCCC
Confidence            1          144446654321  0000000000   0011 011235  357899999998766665543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=86.73  E-value=16  Score=32.06  Aligned_cols=144  Identities=12%  Similarity=0.053  Sum_probs=75.4

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      .|..++....  +.+.-. ||.|..|-....-......   .             ....|..++..... .++. . ||.
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~---~-------------~~~~i~~ia~G~~h-s~~l-~-~G~   82 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPA---A-------------TQSGVDAIAAGNYH-SLAL-K-DGE   82 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCG---G-------------GGSCCCEEEECSSE-EEEE-E-TTE
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCc---c-------------CCCCEEEEEeCCCE-EEEE-E-CCE
Confidence            4666665433  222234 8999999765432211111   0             01146666655333 2333 4 899


Q ss_pred             EEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883          258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                      |+.|-....-.+-.-..-...|..++.. .  ...+.-. ||.|+.|-.......+    ........|..++...+.  
T Consensus        83 v~~wG~n~~Gqlg~P~~~~~~v~~ia~G-~--~hs~al~-~G~v~~wG~n~~gqlg----~~~~~~~~i~~i~~G~~~--  152 (282)
T 3qhy_B           83 VIAWGGNEDGQTTVPAEARSGVDAIAAG-A--WASYALK-DGKVIAWGDDSDGQTT----VPAEAQSGVTALDGGVYT--  152 (282)
T ss_dssp             EEEEECCTTSTTCCCGGGSSSEEEEEEE-T--TEEEEEE-TTEEEEEECCTTSTTS----CCGGGGSSEEEEEECSSE--
T ss_pred             EEEeeCCCCCCCCCCcccCCCeEEEECc-C--CEEEEEe-CCeEEEecCCCCCcCC----CCccCCCCeEEEEcccCE--
Confidence            9999765432211111123467777775 2  2333445 9999999765221111    111233567777765432  


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 010883          338 LISNGKDQAIKLWDIRK  354 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~  354 (498)
                      .+.-. ||.|..|-...
T Consensus       153 ~~~l~-~G~v~~wG~n~  168 (282)
T 3qhy_B          153 ALAVK-NGGVIAWGDNY  168 (282)
T ss_dssp             EEEEE-TTEEEEEECCT
T ss_pred             EEEEE-CCEEEEecCCC
Confidence            33333 79999998765

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.26  E-value=25  Score=31.52  Aligned_cols=209  Identities=10%  Similarity=0.033  Sum_probs=112.3

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEE---ECCC------CeEEEEEeecCCCceeEEEE-EeCC--CCCeEEEEECCCeE
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIY---DVER------GWKIQKDILAKSLRWTVTDT-SLSP--DQRHLVYASMSPIV  200 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw---~~~~------~~~~~~~~~~~~~~~~v~~~-~~sp--~~~~l~~~s~d~~i  200 (498)
                      .+..+........|+.-+..|.++-.   ++..      |..+...+.... ...|..+ ...+  +..++++++.+|.|
T Consensus        43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~i  121 (327)
T 3uc1_A           43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLV  121 (327)
T ss_dssp             CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred             EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence            34444444444555555667765443   3332      222211222222 2345544 3432  57899999999999


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCe---------ee
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANK---------LS  269 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~--~~~---------~~  269 (498)
                      +.-.+..-.......    ...+.+.     . ...+..+........|+..+..|.+..+...  .-.         ..
T Consensus       122 Kr~~l~~~~~~~r~G----~~~i~lk-----e-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~  191 (327)
T 3uc1_A          122 KKSKLTDFDSNRSGG----IVAVNLR-----D-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG  191 (327)
T ss_dssp             EEEEGGGGCCCCSSC----EESCBCC-----T-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEES
T ss_pred             EEeEHHHhhccccCc----eEEEEEC-----C-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeee
Confidence            998875432211100    0000010     0 1245555555566678888999999888776  211         11


Q ss_pred             EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC-----CceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883          270 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                      ..+ .....|.++... ..+..++..+..|.++.-.+......     +.....+....+.+..+....+...++..+.+
T Consensus       192 i~L-~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~  269 (327)
T 3uc1_A          192 MRF-NIDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG  269 (327)
T ss_dssp             SCC-CTTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred             ecC-CCCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence            112 234556666665 44568889999999998876533211     11112222213345555444455567777888


Q ss_pred             CcEEEEeCCC
Q 010883          345 QAIKLWDIRK  354 (498)
Q Consensus       345 g~i~iwd~~~  354 (498)
                      |.+..++...
T Consensus       270 G~~ir~~~~~  279 (327)
T 3uc1_A          270 GGVIRTAARQ  279 (327)
T ss_dssp             GCEEEEEGGG
T ss_pred             CeEEEEehhh
Confidence            8888887655

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=82.40  E-value=30  Score=31.81  Aligned_cols=166  Identities=8%  Similarity=-0.016  Sum_probs=76.8

Q ss_pred             CCceEEEEEcC--CCCEEEEEECCC----eEEEEECCCCeEEEEEeec---C-C-------CceeEEEEEeCCC--CCeE
Q 010883          131 TSRAYVSQFSA--DGSLFVAGFQAS----QIRIYDVERGWKIQKDILA---K-S-------LRWTVTDTSLSPD--QRHL  191 (498)
Q Consensus       131 ~~~v~~~~~s~--dg~~la~~~~dg----~i~vw~~~~~~~~~~~~~~---~-~-------~~~~v~~~~~sp~--~~~l  191 (498)
                      ...|.+++++|  ++.+.|.+ ..|    .|... .+.+.........   . .       ....|.++++.|.  ...|
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred             CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence            45799999999  55555544 344    33332 2333322222111   0 0       1125888999872  4556


Q ss_pred             EEEECCCeEEEEECCCCceeccccccccccCcccccc--CCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee
Q 010883          192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKL  268 (498)
Q Consensus       192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~  268 (498)
                      .++...+.|...+-...................+...  ........+.+|.+.|. ...|+++..++.|+..+- .++.
T Consensus       132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t  210 (394)
T 3b7f_A          132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD  210 (394)
T ss_dssp             EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred             EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence            6666566555443222222221111000000000000  00011235889999883 344566655555554432 2222


Q ss_pred             eEEEec-----c--------CCCeeEEEEeCCCCCEEEEeeCCC
Q 010883          269 SLRILA-----H--------TSDVNTVCFGDESGHLIYSGSDDN  299 (498)
Q Consensus       269 ~~~~~~-----~--------~~~v~~~~~~~~~~~~l~s~s~dg  299 (498)
                      -..+..     +        ...+.++.+.|.++..|+.+...+
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            222211     0        124788998755567777777655

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=82.11  E-value=31  Score=31.74  Aligned_cols=191  Identities=11%  Similarity=0.022  Sum_probs=87.5

Q ss_pred             CEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCC----eEEEEECCCCceecccccc
Q 010883          144 SLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSP----IVHIVDVGSGTMESLANVT  217 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~----~i~iwd~~~~~~~~~~~~~  217 (498)
                      ..|.+|+..| +.+++... +......... .....|.+|++.| +...|.++...+    .|... .+.++.-......
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~   99 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP   99 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence            3566777776 55555432 2222221111 1233799999998 334444444444    34332 2233221111110


Q ss_pred             ccccCccccccCCCC----ceecEEEEEEcC-C-CCEEEEEeCCCeEEEEECCCCeeeEEEec-----------------
Q 010883          218 EIHDGLDFSAADDGG----YSFGIFSLKFST-D-GRELVAGSSDDCIYVYDLEANKLSLRILA-----------------  274 (498)
Q Consensus       218 ~~~~~~~~~~~~~~~----h~~~i~~~~~s~-~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----------------  274 (498)
                           ..+... ...    ....|.++++.| + ...|.++...+.|+..+-. ++.-..+..                 
T Consensus       100 -----~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g  172 (394)
T 3b7f_A          100 -----PAFNKA-PEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDG  172 (394)
T ss_dssp             -----CCCCCC-C----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC---
T ss_pred             -----ccCCCc-ccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccC
Confidence                 000000 000    112588899987 2 4456666666666655432 222222211                 


Q ss_pred             --cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc-----c--------cccEEEEEEcCC-CCEE
Q 010883          275 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-----H--------LEGITFIDSRGD-GRYL  338 (498)
Q Consensus       275 --~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~--------~~~v~~l~~~~~-~~~l  338 (498)
                        ....+.+|.+.|.+...|+.+..++.|...+-     .++.-..+..     +        ...+.++.+.|+ ...|
T Consensus       173 ~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-----gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l  247 (394)
T 3b7f_A          173 TPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-----AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDIL  247 (394)
T ss_dssp             -CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-----TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEE
T ss_pred             CCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-----CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEE
Confidence              12357788887544455555554454444321     1111111110     0        134888999885 3566


Q ss_pred             EEEeCCCcEEEE
Q 010883          339 ISNGKDQAIKLW  350 (498)
Q Consensus       339 ~s~~~dg~i~iw  350 (498)
                      +.+...+ |...
T Consensus       248 ~vg~~~g-l~~s  258 (394)
T 3b7f_A          248 YQQNHCG-IYRM  258 (394)
T ss_dssp             EEEETTE-EEEE
T ss_pred             EEEcCCe-EEEe
Confidence            6666544 4443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	498
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-14
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.9 bits (229), Expect = 2e-21
 Identities = 59/338 (17%), Positives = 106/338 (31%), Gaps = 44/338 (13%)

Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
            F    S+ V+  + + I+++D E G   +     K    +V D S     + L   S  
Sbjct: 24  IFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSAD 80

Query: 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257
             + +                             G+   + S+    +G  +V+ S D  
Sbjct: 81  MTIKL----------------WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 317
           I +++++          H   V  V   ++ G LI S S+D   +VW         +   
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRP-NQDGTLIASCSNDQTVRVWVVA----TKECKA 179

Query: 318 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 377
            L  H   +  I    +  Y   +    +      +      S +       WD      
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---- 235

Query: 378 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437
                         + T  GH     +    F      G K+I + + D  + V+D  + 
Sbjct: 236 ----------TGMCLMTLVGHD--NWVRGVLFHS----GGKFILSCADDKTLRVWDYKNK 279

Query: 438 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
             +  L  H   V    +H + P +V+ S D  V  WE
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.2 bits (222), Expect = 2e-20
 Identities = 42/268 (15%), Positives = 95/268 (35%), Gaps = 27/268 (10%)

Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G+   +  + F      +V+ S D  I V+D E       +  HT  V  + F      L
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351
               +D  +     +    ++      + GH   ++ +    +G +++S  +D+ IK+W+
Sbjct: 75  ASCSADMTIKLWDFQGFECIR-----TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 352 IRKMSSN----------------------ASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389
           ++                           ASC+       W     +   + R+ +H  +
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 449
                 +      +      +        ++ +GS D  + ++D+ +G  +  L  H + 
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 450 VRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
           VR   +H     ++S + D  +  W++ 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 9e-12
 Identities = 27/177 (15%), Positives = 48/177 (27%), Gaps = 7/177 (3%)

Query: 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361
           K W  R           L GH   +T +        ++S  +D  IK+WD        + 
Sbjct: 1   KEWIPR-----PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL 55

Query: 362 NL--GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 419
                                              ++    +        S        +
Sbjct: 56  KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115

Query: 420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476
           I + S D  + ++++ +G  V     H   VR    +    ++ S S D  V  W  
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
             +  AL  H SPV    +HP   ++VS+S D  +  W++ 
Sbjct: 7   PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 47

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.3 bits (217), Expect = 1e-19
 Identities = 65/351 (18%), Positives = 116/351 (33%), Gaps = 46/351 (13%)

Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY---A 194
           +FS DG     G   +  ++Y V  G  + +     +      + + S      +Y    
Sbjct: 69  KFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254
             SP    +  G+          E    +        G+   I+SL +   G +LV+GS 
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMI----LQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 255 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR---CLNV 311
           D  + ++DL         L+    V TV      G  I +GS D   +VWD      +  
Sbjct: 184 DRTVRIWDLR-TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242

Query: 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 371
                    GH + +  +    DG+ ++S   D+++KLW+++  ++ +            
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 431
                                                 S   +   +YI +GS D  V  
Sbjct: 303 TYIGHK----------------------------DFVLSVATTQNDEYILSGSKDRGVLF 334

Query: 432 YDLVSGEQVAALKYHTSPVRDC------SWHPSQPMLVSSSWDGDVVRWEF 476
           +D  SG  +  L+ H + V         S  P   +  + S D     W++
Sbjct: 335 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 3e-16
 Identities = 49/277 (17%), Positives = 95/277 (34%), Gaps = 38/277 (13%)

Query: 100 YSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIR 156
           +S  G+F A      L R   +     V                  G   V+G     +R
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188

Query: 157 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 216
           I+D+  G       +   +           D +++   S+   V + D  +G        
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTT---VAVSPGDGKYIAAGSLDRAVRVWDSETG-------- 237

Query: 217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-------- 268
             + + LD       G+   ++S+ F+ DG+ +V+GS D  + +++L+            
Sbjct: 238 -FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 269 ----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324
                +  + H   V +V    ++   I SGS D     WD++     G P  +L GH  
Sbjct: 297 SGTCEVTYIGHKDFVLSVAT-TQNDEYILSGSKDRGVLFWDKK----SGNPLLMLQGHRN 351

Query: 325 GITFIDSRG------DGRYLISNGKDQAIKLWDIRKM 355
            +  +          +     +   D   ++W  +K+
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 9e-13
 Identities = 45/257 (17%), Positives = 78/257 (30%), Gaps = 27/257 (10%)

Query: 248 ELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTVCFGDESGHLIYSGSDDN--LC 301
           + +   ++D   +Y+    +       + L HTS V  V F    G  + +G +    + 
Sbjct: 30  DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF-SNDGEYLATGCNKTTQVY 88

Query: 302 KVWDRRCL-----------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
           +V D   +           + +             I  +    DG++L +  +D+ I++W
Sbjct: 89  RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148

Query: 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQ--ARDLKHPCDQSVATYKGHSVLRTLIRCH 408
           DI             +       +            +      + T +    L       
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 208

Query: 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-------HTSPVRDCSWHPSQPM 461
              V     KYI  GS D  V V+D  +G  V  L         H   V    +      
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268

Query: 462 LVSSSWDGDVVRWEFPG 478
           +VS S D  V  W    
Sbjct: 269 VVSGSLDRSVKLWNLQN 285

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 5e-18
 Identities = 46/337 (13%), Positives = 85/337 (25%), Gaps = 59/337 (17%)

Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
            +  D  L V+  Q  ++ I+D     K+            V   + +P   ++    + 
Sbjct: 62  HWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVACGGLD 118

Query: 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257
            I  I ++ +       +          S       +  + S              S D 
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS--------------SGDT 164

Query: 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 317
                              +             L  SG+ D   K+WD R    +G    
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----EGMCRQ 220

Query: 318 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 377
              GH   I  I    +G    +   D   +L+                         + 
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLF-------------------DLRADQEL 261

Query: 378 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437
              + D       SV+                   +S   + +  G  D    V+D +  
Sbjct: 262 MTYSHDNIICGITSVS-------------------FSKSGRLLLAGYDDFNCNVWDALKA 302

Query: 438 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474
           ++   L  H + V           + + SWD  +  W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESG 289
           G+   I ++ F  +G     GS D    +     +   ++         + +V F  +SG
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSG 282

Query: 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 349
            L+ +G DD  C VWD      K   AGVL GH   ++ +    DG  + +   D  +K+
Sbjct: 283 RLLLAGYDDFNCNVWDAL----KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 350 WD 351
           W+
Sbjct: 339 WN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 2e-15
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 18/196 (9%)

Query: 110 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD 169
           D    L               T        + D  LFV+G   +  +++DV  G   Q  
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT- 221

Query: 170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229
                    +      P+       S      + D+ +       +   I          
Sbjct: 222 --FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-------- 271

Query: 230 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 289
                 GI S+ FS  GR L+AG  D    V+D      +  +  H + V+ +    + G
Sbjct: 272 ------GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDG 324

Query: 290 HLIYSGSDDNLCKVWD 305
             + +GS D+  K+W+
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.9 bits (172), Expect = 6e-14
 Identities = 24/208 (11%), Positives = 62/208 (29%), Gaps = 10/208 (4%)

Query: 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 334
           H + +  + +      L+ S S D    +WD             +      +        
Sbjct: 54  HLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSY----TTNKVHAIPLRSSWVMTCAYAPS 108

Query: 335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 394
           G Y+   G D    +++++    N   +     +        +    + +    D + A 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168

Query: 395 YKGHSVLRTLIRCHFSP-----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 449
           +   +  +T      +        +   +   +G+ D+   ++D+  G        H S 
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228

Query: 450 VRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
           +    + P+     + S D     ++  
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLR 256

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 43/201 (21%)

Query: 233 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 292
           ++  + SL  + D R  V+G+ D    ++D+           H SD+N +CF   +G+  
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAF 241

Query: 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352
            +GSDD  C+++D R        +      + GIT +     GR L++   D    +WD 
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 412
            K                                          GH     +     +  
Sbjct: 300 LKA----------------------------------DRAGVLAGHD--NRVSCLGVTD- 322

Query: 413 YSTGQKYIYTGSHDSCVYVYD 433
                  + TGS DS + +++
Sbjct: 323 ---DGMAVATGSWDSFLKIWN 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 2e-16
 Identities = 55/342 (16%), Positives = 97/342 (28%), Gaps = 19/342 (5%)

Query: 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 193
           AY    +ADG +    F    +    + R  +    I   +    V   ++S   RH+  
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---INTLNHGEVVCAVTISNPTRHVYT 68

Query: 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 253
                 V + D+     +S             S  D       I S K   DG  L+ G 
Sbjct: 69  GGKG-CVKVWDISHPGNKSP-----------VSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

Query: 254 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 313
               + ++DL A       +      +       +                         
Sbjct: 117 EASTLSIWDLAAPT---PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173

Query: 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373
                  GH +G + ID   DG  L + G D  ++ WD+R+       +   + +   Y 
Sbjct: 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233

Query: 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433
                          +           L     C  S  ++   K+  +   D+ +  + 
Sbjct: 234 PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293

Query: 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
              G  +   K  +S V  C        +V+ S D     +E
Sbjct: 294 TPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 41/286 (14%), Positives = 69/286 (24%), Gaps = 47/286 (16%)

Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296
            +S   + DG+        D +    +  +   +  L H   V  V         +Y+G 
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTI-SNPTRHVYTGG 70

Query: 297 DDNLCKVWD-RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355
              + KVWD     N         +     I       DG  LI  G+   + +WD+   
Sbjct: 71  KGCV-KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129

Query: 356 SSNASCNLGFRSYEWDYR----WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 411
           +      L   +                      +     +         +         
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189

Query: 412 VYSTGQKYIYTGSHDSCVYVYDL------------------------------------- 434
             S     ++TG  D+ V  +DL                                     
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249

Query: 435 ---VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
              V+      L  H S V    +       VS+  D  +  W  P
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 334
           H S V ++ F    G    S   DNL   W        G            +   D   D
Sbjct: 264 HESCVLSLKF-AYCGKWFVSTGKDNLLNAWRTP----YGASIFQS-KESSSVLSCDISVD 317

Query: 335 GRYLISNGKDQAIKLWDI 352
            +Y+++   D+   ++++
Sbjct: 318 DKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 17/88 (19%)

Query: 176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF 235
              V     +   +  V      +++      G     +                   S 
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----------------KESS 307

Query: 236 GIFSLKFSTDGRELVAGSSDDCIYVYDL 263
            + S   S D + +V GS D    VY++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 99  NYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIY 158
             +G       +  ++   ++     + +    S     +F+  G  FV+  + + +  +
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292

Query: 159 DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205
               G  I +   + S    V    +S D +++V  S      + +V
Sbjct: 293 RTPYGASIFQSKESSS----VLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 43/327 (13%), Positives = 81/327 (24%), Gaps = 77/327 (23%)

Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT--VTDTSLSPDQRHLVYAS 195
             S        G +   ++++D+              L     +    L PD   L+   
Sbjct: 58  TISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

Query: 196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS------------ 243
            +  + I D+ + T    A +T         A               +            
Sbjct: 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176

Query: 244 ---------------TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 288
                          ++    +     D             L+    TS + ++ +    
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236

Query: 289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 348
             L          +  +   L+V       L  H   +  +     G++ +S GKD  + 
Sbjct: 237 EWLAVG------MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290

Query: 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408
            W                                        S+   K  S   +++ C 
Sbjct: 291 AWRTPYG----------------------------------ASIFQSKESS---SVLSCD 313

Query: 409 FSPVYSTGQKYIYTGSHDSCVYVYDLV 435
            S       KYI TGS D    VY+++
Sbjct: 314 ISV----DDKYIVTGSGDKKATVYEVI 336

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.5 bits (173), Expect = 3e-14
 Identities = 39/323 (12%), Positives = 86/323 (26%), Gaps = 34/323 (10%)

Query: 174 SLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 232
           + R   T  S  P    + Y    S  V  +D G   +  +   T             G 
Sbjct: 15  TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-------------GH 61

Query: 233 YSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEANKLSLRIL--------AHTSDVNTV 282
            S  + ++KFS     + L +G     + V+    +K S  +              ++ +
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 283 CF-GDESGHLIYSGSDDNLCKVWDR------RCLNVKGKPAGVLMGHLEGITFIDSRGDG 335
            +  +     +     DN               ++   +                + GD 
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 395
             ++             R      S             ++      R +     +S    
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 396 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 455
           K     +  ++     +     +   T   D+ + V+D+ + + V         + +   
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 456 ---HPSQPMLVSSSWDGDVVRWE 475
                    ++S S DG +  +E
Sbjct: 302 GVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 42/326 (12%), Positives = 87/326 (26%), Gaps = 25/326 (7%)

Query: 125 WPVDQTTSRAYVSQ--FSADGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTD 181
            P   +T R + +   +    +        S  +R  D                   VT 
Sbjct: 9   IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 182 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 241
              SP +      S        + G   +       E +       ++    +  I  + 
Sbjct: 69  VKFSPIKGSQYLCSGD------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

Query: 242 FSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 300
           +  +G R  V G   D   V+    +  SL  ++  S     C   +S  +      D+ 
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 301 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 359
             V+ +                   +  ++ S   G ++I+ G D+ I  +D +      
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242

Query: 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV-----------ATYKGHSVLRTLIRCH 408
                    +     + +    +      D ++             +          +  
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302

Query: 409 FSPVYSTGQKYIYTGSHDSCVYVYDL 434
                 TG   I + S D  +  Y+L
Sbjct: 303 VVA---TGNGRIISLSLDGTLNFYEL 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 7e-14
 Identities = 31/266 (11%), Positives = 59/266 (22%), Gaps = 27/266 (10%)

Query: 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLI 292
            I  +K       L+  S D  + VY  +    ++ +L    +   +    F D +   I
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352
           Y G+        D                                   +G  + I   + 
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP- 411
                         +   +  +      +R +    +  V  ++             S  
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 412 --------VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---------------HTS 448
                   +    Q+     S D  V V                                
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 449 PVRDCSWHPSQPMLVSSSWDGDVVRW 474
           PV    + P    L ++  DG +  W
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCW 278

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 25/338 (7%), Positives = 75/338 (22%), Gaps = 35/338 (10%)

Query: 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197
           +     SL +       + +Y  +   K    + +   +  +   +   +    +Y    
Sbjct: 18  KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77

Query: 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257
               +     G+    A      +         G       S     +  +         
Sbjct: 78  QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137

Query: 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 317
                            +T   N +   D +   +  G +++  + +             
Sbjct: 138 AVKN---------LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 318 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 377
                 +         +      +  D  + +        + +                 
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN----------------- 231

Query: 378 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437
              ++     C +                   S  +S   K++YT   D  +  ++L + 
Sbjct: 232 --SSKRFAFRCHRLNLKDTNL------AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283

Query: 438 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
           +++       +         S  +L  ++ D       
Sbjct: 284 KKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 24/222 (10%), Positives = 48/222 (21%), Gaps = 16/222 (7%)

Query: 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID-SR 332
           A    ++ +     S  L+   S D    V+               + +   +   +   
Sbjct: 9   APKDYISDIKI-IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ-SLRYKHPLLCCNFID 66

Query: 333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392
                +        I   D+    S  +      +            +           V
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---------DSCVYVYDLVSGEQVAAL 443
              + +      ++   S       K     ++         +S V  + L   E     
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 444 KYHTS----PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481
              +               Q     SS DG V    F   G+
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 26/209 (12%), Positives = 67/209 (32%), Gaps = 4/209 (1%)

Query: 111 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 170
                   +        + T  +  +     + S  + G   SQ++ + +         I
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 171 LAKSLRWT-VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229
               L++       L  +Q     +S+   V +        +   +              
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG-DDYNSSKRFAFRCHRLNLK 246

Query: 230 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 289
           D   ++ + S++FS   + L    SD  I  ++L+  K  ++  A  ++ + V     S 
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKI-ACSD 304

Query: 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGV 318
           +++   + D+  K        ++   + +
Sbjct: 305 NILCLATSDDTFKTNAAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 446 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNK 488
               + D    PS+ +L+ +SWDG +  ++F    +    L  
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS 52

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 2e-13
 Identities = 51/373 (13%), Positives = 106/373 (28%), Gaps = 80/373 (21%)

Query: 136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 195
           ++     G+  V+G   + ++++    G  ++           V  + +  +        
Sbjct: 20  ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMRDNIIISGSTD 76

Query: 196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE------- 248
            +  V   + G        + + +            G       +     G+        
Sbjct: 77  RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136

Query: 249 -------------LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 295
                        +V+G+ D  + V+D E       +  HT+ V ++ F    G  + SG
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSG 193

Query: 296 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355
           S D   +VWD       G     L GH    + ++       L+S   D  +K+WDI+  
Sbjct: 194 SLDTSIRVWDVET----GNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG 247

Query: 356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 415
               +     +                                                 
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKN------------------------------------ 271

Query: 416 GQKYIYTGSHDSCVYVYDLVSGEQVAALK-----YHTSPVRDCSWHPSQPMLVSSSWDGD 470
              ++ T S D  V ++DL +GE +  L           V       ++ +    S +G 
Sbjct: 272 ---FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

Query: 471 ----VVRWEFPGN 479
               ++  +F  +
Sbjct: 329 EETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 449
           +S    KGH      +              I +GS D+ + V+  V+G+ +  L  HT  
Sbjct: 7   KSPKVLKGHD---DHVITCLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 450 VRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
           V       +  +  S+     V   E  
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETG 87

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.5 bits (163), Expect = 6e-13
 Identities = 31/337 (9%), Positives = 77/337 (22%), Gaps = 38/337 (11%)

Query: 125 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 183
             +        V   +  G   +    ++  +   D+  G  + +  L+       +   
Sbjct: 27  ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86

Query: 184 L--SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 241
              SPD + L        + +                ++D    S          I  L 
Sbjct: 87  AALSPDGKTLAIYESPVRLELTHFEVQP-----TRVALYDAETLSRRKAFEAPRQITMLA 141

Query: 242 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 301
           ++ DG +L     D  +   +       +      S         +   +        + 
Sbjct: 142 WARDGSKLYGLGRDLHVMDPE---AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVM 198

Query: 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361
                                        +R D            +   D+         
Sbjct: 199 ATPF-----------------------YTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

Query: 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH--FSPVYSTGQKY 419
                   + +     P + R             + ++ ++ +   H  +S   ST    
Sbjct: 236 VRI--MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293

Query: 420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 456
           ++ G     +  YD  + E+   +    +     +  
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 24/321 (7%), Positives = 70/321 (21%), Gaps = 49/321 (15%)

Query: 188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 247
           + +++  +    + ++D     ++ +  +                          +  GR
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITI--------------ADAGPTPMVPMVAPGGR 46

Query: 248 EL-VAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLC 301
                 +  + +   DL   +   RI   T       +       +   L    S   L 
Sbjct: 47  IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE 106

Query: 302 KVWDR------RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK- 354
                         + +             IT +    DG  L   G+D  +   +    
Sbjct: 107 LTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTL 166

Query: 355 -------------MSSNASCNLGFRSYEWDYRWMDYPPQARDLK------HPCDQSVATY 395
                         +      +  +          +    +D+       +         
Sbjct: 167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226

Query: 396 KGHSVLRTLIRCHFSPVY--STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC 453
           +   +    +R      +  +            + +  +DL     +  +          
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSV 285

Query: 454 SWHPSQPMLVSSSWDGDVVRW 474
           +       +      GD+  +
Sbjct: 286 NVSTDGSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 6/62 (9%), Positives = 17/62 (27%), Gaps = 3/62 (4%)

Query: 417 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP--VRDCSWHPS-QPMLVSSSWDGDVVR 473
           + YI   +    + V D         +    +          P  +    + +    +V+
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 474 WE 475
            +
Sbjct: 61  ID 62

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 38/366 (10%), Positives = 86/366 (23%), Gaps = 42/366 (11%)

Query: 135 YVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 193
           +   FS  DG L     +  Q  I DV   + ++   + + LR  +       D +    
Sbjct: 6   FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK---VPEPLR--IRYVRRGGDTKVAFI 59

Query: 194 ASMS--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251
                   + I D  +G  E           +                   + D      
Sbjct: 60  HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD------ 113

Query: 252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 311
              +         + +  +     + +   + +G    H    G       V+D     +
Sbjct: 114 --LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171

Query: 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW- 370
                                 D + L            D   ++ +             
Sbjct: 172 FAA-----TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226

Query: 371 --DYRWMDYPPQARDLK-------------HPCDQSVATYKGHSVLRTLIRCHFSPVYST 415
                     P++   +              P +     Y+    L + I  +  PV+  
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286

Query: 416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
              Y         +  YD+ + +    +    + + D      +  ++    DG +  + 
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342

Query: 476 FPGNGE 481
                +
Sbjct: 343 LEKPED 348

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 23/262 (8%), Positives = 54/262 (20%), Gaps = 27/262 (10%)

Query: 111 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 170
               +              + +  +++           G+    I +YD+E         
Sbjct: 117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-- 174

Query: 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 230
              +        +   D ++L Y S   +    D                  +       
Sbjct: 175 --TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF---------SFEVVSKPFVI 223

Query: 231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGD 286
                     K         AG  D            +       I+   S +       
Sbjct: 224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV 283

Query: 287 ES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 344
                       +  +   +D +           +      +T +    D + ++    D
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVK--------TRKVTEVKNNLTDLRLSADRKTVMVRKDD 335

Query: 345 QAIKLWDIRKMSSNASCNLGFR 366
             I  + + K     +     R
Sbjct: 336 GKIYTFPLEKPEDERTVETDKR 357

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 65.5 bits (158), Expect = 3e-12
 Identities = 30/336 (8%), Positives = 85/336 (25%), Gaps = 27/336 (8%)

Query: 139 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMS 197
             A     +     + + + DV     + K  +            ++PD R   V  +  
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFG-PGTAMMAPDNRTAYVLNNHY 61

Query: 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTDGRELVAGSSD 255
             ++ +D+ +      AN++ +   +  S         G  +++    T           
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 256 DCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVWDRRC---LNV 311
             + V+       +  +          +    + G L  +G D     V   +    L +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 312 KGKPAGVLMGHLEGITFIDSRGDG---------------RYLISNGKDQAIKLWDIRKMS 356
           +               +                      +   +          D++   
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH--FSPVYS 414
           ++           +           +        +    K   +++     H  +   + 
Sbjct: 242 THTQEFADLTELYFTGLRS-PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFD 300

Query: 415 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 450
                +Y G   + + V++  + E+V  +K     +
Sbjct: 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 13/277 (4%), Positives = 50/277 (18%), Gaps = 41/277 (14%)

Query: 240 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDD 298
                    ++  +  + ++V D+ ++ +     +       T     ++       +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 299 NLCKVWDRRCLNVKGK--PAGVLMGHLEGITFI------------DSRGDGRYLISNGKD 344
                 D            + V       +                +           K 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 345 QAIKLWDIRKMSSNASCNLGFR-------SYEWDYRWMDYPPQARDLKHPCDQSVATYKG 397
             ++++                           D       P    +     +       
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 398 HSVLR-------------------TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438
            +  R                        +    +   ++   T          DL +G+
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 439 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
                    + +        +           + +++
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD 278

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-HTSPVRDCSWHP-SQPMLVSSSWD 468
           P    G +Y+   ++ + ++V D+ S     +               P ++   V ++  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 469 GDVVRWEFPGN 479
           GD+   +    
Sbjct: 62  GDIYGIDLDTC 72

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 19/246 (7%), Positives = 51/246 (20%), Gaps = 19/246 (7%)

Query: 54  LSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCH 113
           +S    E+           +H+  + P       +              R  +       
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 114 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DIL 171
                             +  Y                   +  +  +           +
Sbjct: 156 G--SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 213

Query: 172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 231
           A+         +      +L     +   H  +    T      +    D        + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273

Query: 232 GYSF---------------GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 276
              +                 + + F   G +L  G + + + V++ +  +    I    
Sbjct: 274 LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333

Query: 277 SDVNTV 282
            D++T 
Sbjct: 334 GDMSTT 339

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 5e-12
 Identities = 32/264 (12%), Positives = 68/264 (25%), Gaps = 26/264 (9%)

Query: 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYS 294
           I    ++ D  ++    ++  +++Y+   NK      +  H   V  V +     + I +
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APDSNRIVT 68

Query: 295 GSDDNLCKVWDRRCLNVK------------------GKPAGVLMGHLEGITFIDSRGDGR 336
              D    VW  +    K                         +G    +  I       
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 396
                   +      +  +  + +  L           +         + P      +  
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 397 GHSVLRTLIRCHFSPVYS----TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 452
               L          V+          +   SHDS V + D      VA L   T P+  
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248

Query: 453 CSWHPSQPMLVSSSWDGDVVRWEF 476
            ++     ++ +   D   V + +
Sbjct: 249 VTFITESSLVAAGH-DCFPVLFTY 271

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 6e-12
 Identities = 30/340 (8%), Positives = 80/340 (23%), Gaps = 36/340 (10%)

Query: 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 238
           ++  + + D+  +     +  VHI +        +  + E H+G              + 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNG-------------QVT 55

Query: 239 SLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSD 297
            + ++ D   +V   +D   YV+ L+        ++   +          +      GS 
Sbjct: 56  GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG 115

Query: 298 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK--- 354
             +  +      N       +       +  +D   +   L +   D   +++       
Sbjct: 116 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175

Query: 355 ----MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC--- 407
                 +     + F    ++                  +        +V          
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 408 ----------HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 457
                       +  + T    +  G     V ++   S     +        +  S   
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRG 294

Query: 458 SQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFY 497
                   + D           G     L+K  + +    
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL 334

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 398 HSVLRTLIRCH-FSPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCS 454
           HS L   I CH ++      +  I    ++  V++Y+       QV  LK H   V    
Sbjct: 3   HSFLVEPISCHAWNK----DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD 58

Query: 455 WHPSQPMLVSSSWDGDVVRWEFP 477
           W P    +V+   D +   W   
Sbjct: 59  WAPDSNRIVTCGTDRNAYVWTLK 81

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 36/350 (10%), Positives = 81/350 (23%), Gaps = 18/350 (5%)

Query: 139 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198
           ++ D +         ++ IY+      +Q   L +     VT    +PD   +V      
Sbjct: 15  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSNRIVTCGTDR 73

Query: 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 258
             ++  +   T +    +  I+              F + S             +     
Sbjct: 74  NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 133

Query: 259 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS---GSDDNLCKVWDRRCLNVKGKP 315
                      L +  H + V       +    I+S      +              G+ 
Sbjct: 134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 193

Query: 316 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 375
                     +  +    +G  +     D  + L D  K  + A+      S       +
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA----SETLPLLAV 249

Query: 376 DYPPQARDLKHPCDQSVATY-----KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430
            +  ++  +    D     +      G       +                  + D    
Sbjct: 250 TFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 309

Query: 431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQP----MLVSSSWDGDVVRWEF 476
                +         H + V   S             ++  DG +  W+ 
Sbjct: 310 SEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 11/121 (9%)

Query: 241 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 300
            F T+   LVA   D    ++  ++    L                 +    +   D   
Sbjct: 250 TFITESS-LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 308

Query: 301 CKVWDRRCLNVKGKPAGVLMGHLEGITFI----DSRGDGRYLISNGKDQAIKLWDIRKMS 356
                          AG+   H   ++ I      +       + G D  + +WD+R + 
Sbjct: 309 SSEGSAA------AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

Query: 357 S 357
           S
Sbjct: 363 S 363

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 4e-11
 Identities = 41/349 (11%), Positives = 89/349 (25%), Gaps = 16/349 (4%)

Query: 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 191
             + ++    + +  + G     IR+YD      + +          V     +     +
Sbjct: 12  MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGGILV 68

Query: 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF-----GIFSLKFSTDG 246
             ++   +                       LD     +  Y           +      
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 306
             +     +    +      +    +      + +V      G+++ SGS DN   VWD 
Sbjct: 129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 188

Query: 307 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366
                  K   +L GH + I       + +  IS   D  I++WD+       +      
Sbjct: 189 AQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244

Query: 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 426
                     +   A             Y              +         I     +
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSGSE 302

Query: 427 SCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474
           +   +Y+L SG+ V A +      +   ++     ++ +   DG     
Sbjct: 303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 23/236 (9%)

Query: 242 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 301
              +   ++ G+ D  I VYD    K  L++  H   V  + +    G ++ SGS D   
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTV 76

Query: 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361
           +VWD +         G           I    + +Y+++  +D  + +W + K SS    
Sbjct: 77  RVWDIKKGCCTHVFEGHNSTV--RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134

Query: 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 421
                     +   + P             V   +GH               S     + 
Sbjct: 135 GEEHDYPLVFHTPEENPYF-----------VGVLRGH--------MASVRTVSGHGNIVV 175

Query: 422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
           +GS+D+ + V+D+   + +  L  HT  +    +   +   +S+S D  +  W+  
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 231

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 402 RTLIRCHFSPVY---STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 458
           RT +R H + V         Y+ TG+ D  + VYD ++ + +  L  H   V    +   
Sbjct: 5   RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 459 QPMLVSSSWDGDVVRWEF 476
             ++  S+     V    
Sbjct: 65  GILVSGSTDRTVRVWDIK 82

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYS 294
            + ++        ++   S++   +Y+L + KL    +      + +V F  +   L+ +
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAA 340

Query: 295 GSDDNLCKVWD 305
              D    +  
Sbjct: 341 VEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 35/206 (16%), Positives = 58/206 (28%), Gaps = 45/206 (21%)

Query: 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 334
           H + V T    +   + + +G+DD + +V+D        K    L GH  G+  +     
Sbjct: 11  HMTSVITCLQFE--DNYVITGADDKMIRVYDSI----NKKFLLQLSGHDGGVWALKYAHG 64

Query: 335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 394
           G  L+S   D+ +++WDI+K            +                           
Sbjct: 65  G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN---------------- 107

Query: 395 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 454
                                  KYI TGS D+ ++V+ L     V              
Sbjct: 108 ----------------------IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145

Query: 455 WHPSQPMLVSSSWDGDVVRWEFPGNG 480
                P  V              G+G
Sbjct: 146 TPEENPYFVGVLRGHMASVRTVSGHG 171

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.5 bits (147), Expect = 6e-11
 Identities = 43/315 (13%), Positives = 80/315 (25%), Gaps = 27/315 (8%)

Query: 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 230
           L ++ R T      +P    + Y +    V+ V VGS T   +                 
Sbjct: 12  LPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT--------------- 55

Query: 231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDES 288
             +S      K S  G    +G     + ++D       L+      +  V  + +  ES
Sbjct: 56  -EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 114

Query: 289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 348
             +   G                           +  + F  SR       S+    AI 
Sbjct: 115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 174

Query: 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-------L 401
                K  S    +  F                         +        V        
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234

Query: 402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQP 460
                  F   +S     I + S D  + ++++ + +    +   T    +      ++ 
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294

Query: 461 MLVSSSWDGDVVRWE 475
            LVS S +G +    
Sbjct: 295 ALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 468
            +P    G K  Y   + + VY   + S         H+         PS     S    
Sbjct: 25  NTP---AGDKIQYC--NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 469 GDVVRWEF 476
           G+V  W+ 
Sbjct: 80  GNVRIWDT 87

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 5/79 (6%)

Query: 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRG 333
             S           G  I S S D   K+W+        K    +          +    
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVA----TLKVEKTIPVGTRIEDQQLGIIW 291

Query: 334 DGRYLISNGKDQAIKLWDI 352
             + L+S   +  I   + 
Sbjct: 292 TKQALVSISANGFINFVNP 310

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 1e-10
 Identities = 39/263 (14%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
             S G++ L++  D +++V+G  D+ I ++D    +    +  HT  V  + + +     
Sbjct: 13  ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70

Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351
             S S   +  V     LN                  +  R +   +++  KD++I +WD
Sbjct: 71  GSSDSTVRVWDVNTGEMLN---------TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS- 410
           +   +      +                            V        +RTL       
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 470
                  + + +GS D+ + ++D+  G  +                     +VS ++DG 
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLR--VLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 471 VVRWEFPGNGEAAPPLNKKRIRR 493
           +  W+     +   P     +R 
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRT 262

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 7/206 (3%)

Query: 271 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330
           RI   +     V         I SG  DN  K+WD+       +   +L GH   +  + 
Sbjct: 7   RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN----TLECKRILTGHTGSVLCLQ 62

Query: 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390
                    S+     +   +  +M +    +     +      M             D 
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 450
           +  T         +       V     KYI + S D  + V++  + E V  L  H   +
Sbjct: 123 ASPT-DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 451 RDCSWHPSQPMLVSSSWDGDVVRWEF 476
               +     ++VS S D  +  W+ 
Sbjct: 182 ACLQYRDR--LVVSGSSDNTIRLWDI 205

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 4e-09
 Identities = 59/349 (16%), Positives = 95/349 (27%), Gaps = 82/349 (23%)

Query: 136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 195
           V     D    V+G + + I+I+D         +        T +   L  D+R ++  S
Sbjct: 18  VYCLQYDDQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCLQYDERVIITGS 72

Query: 196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 255
               V + DV +G M +                          S                
Sbjct: 73  SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS---------------- 116

Query: 256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 315
             I V+D+ +                V   D     I S S D   KVW+        + 
Sbjct: 117 --IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS----TCEF 170

Query: 316 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 375
              L GH  GI  +      R ++S   D  I+LWDI   +                   
Sbjct: 171 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 228

Query: 376 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435
                                                       I +G++D  + V+DLV
Sbjct: 229 KR------------------------------------------IVSGAYDGKIKVWDLV 246

Query: 436 SGEQ---------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475
           +            +  L  H+  V    +      +VSSS D  ++ W+
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD 293

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.5 bits (139), Expect = 5e-10
 Identities = 33/290 (11%), Positives = 67/290 (23%), Gaps = 45/290 (15%)

Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGH 290
           G++  I +L  S DG+ L +  ++  I  +D+     +      H + +  +    +   
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350
              S  D           ++     A  L     G+                        
Sbjct: 70  FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129

Query: 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP----------------------- 387
                 S  S  +   + +          +    K                         
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 388 -----------------CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430
                               +       +             +S     + TGS D+ V 
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 431 VYDLVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
           V+++        +       S V    W      +VS+  D ++  W  P
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 5e-05
 Identities = 22/162 (13%), Positives = 39/162 (24%)

Query: 318 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 377
           V  GH + IT + S  DG+ L S   +  I  WDI    SN        +     +    
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 378 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437
                       + V            +    S                +  Y +  +  
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 438 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479
                    +      +    +  +     D  V  ++  G 
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 168

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 399 SVLRTLIRCHFSPV----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDC 453
           S+ +     H   +     S   K +++   +  +  +D+ +G         H + +   
Sbjct: 3   SIDQVR-YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 454 SWHPSQPMLVSSSWDGDVVRWEFPGNG 480
                +  L + SWD  +      G+G
Sbjct: 62  KTTS-KGDLFTVSWDDHLKVVPAGGSG 87

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 2/126 (1%)

Query: 350 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409
               K S  +           D          +  +    +        + +        
Sbjct: 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219

Query: 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVSSSWD 468
           +      +  + TGS D+ +++Y +    + + AL  H   V +  W      LVSS  D
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD 278

Query: 469 GDVVRW 474
             + RW
Sbjct: 279 ACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (115), Expect = 5e-07
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 334
                      +    L+ +GS D    ++    +    K    L  H +G+  +     
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYS---VKRPMKIIKALNAHKDGVNNLLWETP 269

Query: 335 GRYLISNGKDQAIKLWDI 352
              L+S+G D  IK W++
Sbjct: 270 ST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 7e-04
 Identities = 27/250 (10%), Positives = 72/250 (28%), Gaps = 11/250 (4%)

Query: 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291
           G++ GI +L  +     L++GS D  I  +   +         H++ + ++         
Sbjct: 11  GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK--AQE 59

Query: 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351
             S S D+  KV          +P      +      + +  D   L S   D    +  
Sbjct: 60  YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119

Query: 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 411
               S+ +           +   +     +        ++    K   +  +    + + 
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179

Query: 412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 471
               G+  +Y                 ++ A+ +  +          + ++ + S D ++
Sbjct: 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239

Query: 472 VRWEFPGNGE 481
             +      +
Sbjct: 240 FIYSVKRPMK 249

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 29/363 (7%), Positives = 79/363 (21%), Gaps = 61/363 (16%)

Query: 182 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 241
            S+S      V  S    + + D      E+  + +  H                     
Sbjct: 18  FSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD-- 75

Query: 242 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG------------ 289
            + +   +   S    +  Y +     + +++    D+        S             
Sbjct: 76  -AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 290 --HLIYSGSDDNLCKVWD--------------RRCLNVKGKPAGVLMGHLEGITFIDSRG 333
             H + +        +W                             M   +  T +D   
Sbjct: 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 194

Query: 334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW----------------------- 370
            G  + +   +  +++ ++  +    +                                 
Sbjct: 195 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253

Query: 371 -DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 429
                  Y  +  +          + +             S  ++   + + +   D  +
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313

Query: 430 YVYDLVSGEQVAALKYHTSPVRDC----SWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 485
             +D+ + E++  L  H   +       +       L       DV   +          
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFLKKGWRSGMGAD 372

Query: 486 LNK 488
           LN+
Sbjct: 373 LNE 375

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 23/217 (10%), Positives = 53/217 (24%), Gaps = 28/217 (12%)

Query: 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI------- 326
           AH +D+ +V           S S D   KVWD + L+ +          +          
Sbjct: 12  AHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 327 --TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 384
                    +   + +      +  + I +                   +        D+
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKK-----------VIFEKLDLLDSDM 117

Query: 385 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD----LVSGEQV 440
           K     ++     +  L +          +T     +  + +S     +    L     V
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 441 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477
            +    +             ++ +   +G V   E  
Sbjct: 178 ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 213

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 49/348 (14%), Positives = 103/348 (29%), Gaps = 61/348 (17%)

Query: 138 QFSADGS-LFVAGFQASQ---------IRIYDVERGWKIQKDILAKSLRWTVTD----TS 183
             + DGS +  A    S+         + ++D           L  + R+ V      TS
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112

Query: 184 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 243
           L+PD + L++   SP   +  V          +        F  A D  +          
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH-------C 165

Query: 244 TDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 302
            DG    VA  ++    +   E        L     +N   +  ++G L++  +      
Sbjct: 166 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-----INHPAYSQKAGRLVWP-TYTGKIH 219

Query: 303 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 362
             D    + K  PA       E       R  G   ++  +        + +        
Sbjct: 220 QIDLSSGDAKFLPAV--EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 277

Query: 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY- 421
                   D                  + +A ++    + ++   + S      +  +Y 
Sbjct: 278 ASRFVVVLDA--------------KTGERLAKFEMGHEIDSI---NVSQ---DEKPLLYA 317

Query: 422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469
             + D  +Y++D  SGE++ ++                P +++++  G
Sbjct: 318 LSTGDKTLYIHDAESGEELRSVNQLG----------HGPQVITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.8 bits (115), Expect = 8e-07
 Identities = 28/325 (8%), Positives = 72/325 (22%), Gaps = 47/325 (14%)

Query: 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS-----LSP 186
           S +  +  S   +    G +   + ++D         DI                     
Sbjct: 75  SGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCA 133

Query: 187 DQRHLVYASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 245
               L++          + V   +               F        +        S  
Sbjct: 134 SSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCFHIHPGAAATH----YLGSCP 184

Query: 246 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305
                +  +        + A        A           +  G L+++ +   L     
Sbjct: 185 ASLAASDLAAAPAAAGIVGAQCTG----AQNCSSQAAQA-NYPGMLVWAVASSILQGDIP 239

Query: 306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 365
                +K      + G+  G    + R  G  +++  K+    +    +  S +      
Sbjct: 240 AAGATMKAA----IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE-HSRSCLAAAE 294

Query: 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGS 424
            +               +       ++                 +     G    Y   +
Sbjct: 295 NTSSVTASVGQTSGPISNGHDS--DAII---------------AAQ---DGASDNYANSA 334

Query: 425 HDSCVYVYDLVSGEQVAALKYHTSP 449
               + +YD  S +  ++++    P
Sbjct: 335 GTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 22/305 (7%), Positives = 52/305 (17%), Gaps = 46/305 (15%)

Query: 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264
           V      + A         D         S       F+               +V    
Sbjct: 5   VAGSAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTE----------NWVSCAG 54

Query: 265 ANKLSLRI-------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 317
                                 +       S      G   +  +V+D     V   P  
Sbjct: 55  CGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD----PVTFLPIA 110

Query: 318 VLMGHLEGITFIDSR-------GDGRYL-ISNGKDQAIKLWDI--RKMSSNASCNLGFRS 367
            +         +  R            L        A     +              F  
Sbjct: 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI 170

Query: 368 YEWDYRW---------MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 418
           +               +     A                 +          +   +    
Sbjct: 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS------SQAAQANYPGM 224

Query: 419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478
            ++  +                AA+  + S  +  ++  +   +V+   + D +      
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284

Query: 479 NGEAA 483
           +  + 
Sbjct: 285 HSRSC 289

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 13/131 (9%)

Query: 235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-----LAHTSDVNTVCFGDESG 289
           + +   + S  GR L     D  + + DL   + +            S   +   G E  
Sbjct: 62  YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-------DGRYLISNG 342
           + I          + D   L  K   +   M + E     + R             I N 
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 343 KDQA-IKLWDI 352
           K+   I L D 
Sbjct: 182 KETGKILLVDY 192

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 27/246 (10%), Positives = 60/246 (24%), Gaps = 14/246 (5%)

Query: 236 GIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 294
                  S DG ++ VA +  + + + D   N +   + A +S        D     + +
Sbjct: 33  NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTN 92

Query: 295 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354
            +   L  +                +   +    +    DG+ L                
Sbjct: 93  MASSTLSVIDTTSNTVAGT------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV 146

Query: 355 MSSNASCNLGFRS-----YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409
             +  +     RS        D   +             D    +      +        
Sbjct: 147 TKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIA 206

Query: 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWD 468
                T         + + V + D  + +  A +     P    +  P  + + V+ S+ 
Sbjct: 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFC 265

Query: 469 GDVVRW 474
             V   
Sbjct: 266 NTVSVI 271

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 42/388 (10%), Positives = 98/388 (25%), Gaps = 93/388 (23%)

Query: 134 AYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 192
           A+V+    D    F +G    ++R+  V             S+R  +     + D     
Sbjct: 1   AHVAPGELDEYYGFWSGGHQGEVRVLGV------------PSMRELMRIPVFNVDSAT-G 47

Query: 193 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VA 251
           +   +    I+      +    N    H  +  +                  DG+ L + 
Sbjct: 48  WGITNESKEILGGDQQYL----NGDCHHPHISMTD--------------GRYDGKYLFIN 89

Query: 252 GSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIY--SGSDDNLCKVWDRRC 308
             ++  +    L+  K      + +   ++ +    +     Y    ++  + +  D   
Sbjct: 90  DKANTRVARIRLDIMKTDKITHIPNVQAIHGLRL-QKVPKTNYVFCNAEFVIPQPNDGTD 148

Query: 309 LNVKGKPAGV---------------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353
            ++                      + G+L+          G+Y  S   +    +  + 
Sbjct: 149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADY---TGKYATSTCYNSERAVD-LA 204

Query: 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----------LRT 403
               N            D  W+      R        +  T     V             
Sbjct: 205 GTMRN------------DRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252

Query: 404 LIRCHFSP----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA--LKYHTSPVRD----- 452
            I    +P        G+ +I  G     V V  +   + +    ++   + V +     
Sbjct: 253 YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL 312

Query: 453 ----CSWHPSQPMLVSSSWDGDVVRWEF 476
                ++        +   D  V +W  
Sbjct: 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNI 340

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 43/315 (13%), Positives = 80/315 (25%), Gaps = 48/315 (15%)

Query: 180 TDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 237
                  D  +L   ++     + +VD  S  +     V  I  G            + +
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKI-----VKVIDTG------------YAV 64

Query: 238 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-----ILAHTSDVNTVCFGDESGHLI 292
              + S  GR L+    D  I + DL A + +        +   S  ++   G E  + I
Sbjct: 65  HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI 124

Query: 293 YSGSDDNLCKVWDRRCLNVKGK-------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 345
                     + D   L  K                    +  I +  +    I N K+ 
Sbjct: 125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 184

Query: 346 AIKLWDIRKMSSNASC----------NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 395
              L    K   N +           + G+ S    +           +    D+ ++  
Sbjct: 185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 244

Query: 396 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-------GEQVAALKYHTS 448
                     R         G  +  +   D  + +             ++VA L+    
Sbjct: 245 VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 304

Query: 449 PVRDCSWHPSQPMLV 463
                  HP    L 
Sbjct: 305 GSLFIKTHPKSSHLY 319

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 14/227 (6%), Positives = 49/227 (21%), Gaps = 2/227 (0%)

Query: 250 VAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307
           +A      I+V++L         +++     V  +    +  +L      +     +   
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 308 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 367
             +     A                      + +     + +  +         ++    
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127

Query: 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 427
                  +    +   +       +  +        + +         G    +   H +
Sbjct: 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187

Query: 428 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474
             Y Y +        +     P  +     +  M+  +  D      
Sbjct: 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	498
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.62
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.33
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.07
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.04
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.95
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.86
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.29
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.14
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.1
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.91
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.81
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.77
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.75
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.74
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.55
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.41
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.22
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.14
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.13
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.26
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.81
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.62
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.61
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.33
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.72
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.39
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.43
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.48
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.37
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.77

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=332.21  Aligned_cols=285  Identities=17%  Similarity=0.236  Sum_probs=241.4

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      +|...|+|++|+|+|++||+|+ ||.|+|||+.++...  ........|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            7999999999999999999997 789999999765322  2233455788899999999999999999999999999987


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD  286 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  286 (498)
                      ...........              +|...+.+++|+|++.++++++.++.|++|++.+++.......|...|.+++|+ 
T Consensus       128 ~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s-  192 (337)
T d1gxra_         128 APTPRIKAELT--------------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-  192 (337)
T ss_dssp             CC--EEEEEEE--------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-
T ss_pred             ccccccccccc--------------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            65433222211              355589999999999999999999999999999999988888999999999998 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR  366 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  366 (498)
                      +++..+++++.|+.|++||++    .++.+..+ .|...|.+++|+|++++|++++.|+.+++||++...          
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~----~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~----------  257 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----------  257 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----------
T ss_pred             ccccccccccccccccccccc----cceeeccc-ccccceEEEEEcccccccceeccccccccccccccc----------
Confidence            788999999999999999997    66666555 478899999999999999999999999999998732          


Q ss_pred             cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC
Q 010883          367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH  446 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h  446 (498)
                                               ......|...  +    .+.+|+|++++|++++.||.|++||+.+++.+..+. |
T Consensus       258 -------------------------~~~~~~~~~~--i----~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~  305 (337)
T d1gxra_         258 -------------------------KYQLHLHESC--V----LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E  305 (337)
T ss_dssp             -------------------------EEEECCCSSC--E----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred             -------------------------cccccccccc--c----ceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-C
Confidence                                     2233334322  2    233677799999999999999999999999988875 7


Q ss_pred             CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      ...|++++|+|++++|++|+.||.|+|||+
T Consensus       306 ~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            889999999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-42  Score=320.91  Aligned_cols=288  Identities=22%  Similarity=0.319  Sum_probs=256.2

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...|.+|.++|++++|+|++++||+|+.||+|+|||+.+++.+..   ...|...|.+++|+|++.+++++..++.+.+|
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~---~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE---EeCCCCcEEEEeeecccccccccccccccccc
Confidence            357899999999999999999999999999999999999865543   35678899999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      +...........                +|...+.++.|++++..+++++.|+.+++||+.+++....+..|...+.+++
T Consensus        87 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          87 DFQGFECIRTMH----------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  150 (317)
T ss_dssp             ETTSSCEEECCC----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             cccccccccccc----------------cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeee
Confidence            988766543322                4556899999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC--------------------CEEEEEeC
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--------------------RYLISNGK  343 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--------------------~~l~s~~~  343 (498)
                      |+ +++.+|++++.|+.|++|++.    .......+.+|...+.++.++|++                    .++++++.
T Consensus       151 ~~-~~~~~l~~~~~d~~v~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         151 PN-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             cc-cCCCEEEEEeCCCeEEEEeec----cceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            97 789999999999999999998    778888999999999999998753                    46899999


Q ss_pred             CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE
Q 010883          344 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG  423 (498)
Q Consensus       344 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  423 (498)
                      |+.|++||+++                                  +..+..+.+|.....      +.+++|++++|++|
T Consensus       226 d~~i~~~~~~~----------------------------------~~~~~~~~~~~~~v~------~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         226 DKTIKMWDVST----------------------------------GMCLMTLVGHDNWVR------GVLFHSGGKFILSC  265 (317)
T ss_dssp             TSEEEEEETTT----------------------------------TEEEEEEECCSSCEE------EEEECSSSSCEEEE
T ss_pred             CCEEEEEECCC----------------------------------CcEEEEEeCCCCCEE------EEEECCCCCEEEEE
Confidence            99999999987                                  356677777764322      23567799999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      +.||.|++||+.+++++..+.+|.++|++++|+|++++|+||+.||+|+|||
T Consensus       266 ~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-42  Score=328.02  Aligned_cols=300  Identities=24%  Similarity=0.413  Sum_probs=237.9

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe---------------ecCCCceeEEEEEeCCCCCeEE
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---------------LAKSLRWTVTDTSLSPDQRHLV  192 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~---------------~~~~~~~~v~~~~~sp~~~~l~  192 (498)
                      .+|.+.|+|++|||||++||+|+ |+.|+|||+.++..+....               ....|...|++++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 8899999999886654432               1234666799999999999999


Q ss_pred             EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883          193 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI  272 (498)
Q Consensus       193 ~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  272 (498)
                      +|+.||.|++|+...++......                +|...|.++.|++++..+++++.++.|++||..+.......
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQ----------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ecccccccccccccccccccccc----------------cccccccccccccccccccccccceeeeeeecccccccccc
Confidence            99999999999998877654332                46678999999999999999999999999999998887766


Q ss_pred             eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE-------eccccccEEEEEEcCCCCEEEEEeCCC
Q 010883          273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-------LMGHLEGITFIDSRGDGRYLISNGKDQ  345 (498)
Q Consensus       273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~l~s~~~dg  345 (498)
                      ..+ ....++.+.+.++++|++|+.||.|++||.+    .+.....       ..+|...|++++|+|++++|++++.|+
T Consensus       202 ~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         202 SIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             ECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc-cccccccccCCCCCeEEEEcCCCeEEEeecc----cCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            444 4556677777899999999999999999997    4444433       346888999999999999999999999


Q ss_pred             cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec
Q 010883          346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  425 (498)
                      .|++||++...........                      ...........|...  +    .+.+|+|++++|++|+.
T Consensus       277 ~i~iwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~--v----~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTP----------------------NSGTCEVTYIGHKDF--V----LSVATTQNDEYILSGSK  328 (388)
T ss_dssp             EEEEEEC-------------------------------------CEEEEEECCSSC--E----EEEEECGGGCEEEEEET
T ss_pred             cEEEEeccCCccccccccc----------------------cccceeeecccccce--E----EEEEECCCCCEEEEEeC
Confidence            9999999875432221100                      001223333344322  2    23356779999999999


Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeeeeE------EcCCCCeEEEEeCCCcEEEecCC
Q 010883          426 DSCVYVYDLVSGEQVAALKYHTSPVRDCS------WHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~------~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ||.|++||+.+++++..+++|.+.|++++      |+|++++||||+.||+|+||++.
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999999999999999886      46789999999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-40  Score=310.06  Aligned_cols=293  Identities=19%  Similarity=0.300  Sum_probs=245.0

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...|.+|.++|++++|+|++++||+|+.||+|+|||+.++..+...   ..|...|.+++|+|+++++++++.|+.+.+|
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE---ECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE---ecccccEEeeEeeccceeeeeecccceeecc
Confidence            3568999999999999999999999999999999999999666543   4567799999999999999999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      +.............            ..+|.......... .+..+.....+.....+.............+...+....
T Consensus       125 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (340)
T d1tbga_         125 NLKTREGNVRVSRE------------LAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS  191 (340)
T ss_dssp             ESSSSCSCCCEEEE------------ECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             ccccccccccccee------------cccccccccccccc-cccccccccccccccccccccccccccccccceeEeeec
Confidence            98765432221110            01244344444444 455688888999999999998888888888888999999


Q ss_pred             EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      +. +...++++|+.|+.|++||++    .+.++..+.+|...|++++|+|++++|++++.|+.|++||++..        
T Consensus       192 ~~-~~~~~~~~~~~d~~v~i~d~~----~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~--------  258 (340)
T d1tbga_         192 LA-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--------  258 (340)
T ss_dssp             EC-TTSSEEEEEETTTEEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------
T ss_pred             cc-cccceeEEeecCceEEEEECC----CCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc--------
Confidence            86 788999999999999999998    88899999999999999999999999999999999999999873        


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                                ..+..+........+..    .+|+|++++|++|+.||.|++||+.+++++..+
T Consensus       259 --------------------------~~~~~~~~~~~~~~i~~----~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         259 --------------------------QELMTYSHDNIICGITS----VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             --------------------------EEEEEECCTTCCSCEEE----EEECSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             --------------------------ccccccccccccCceEE----EEECCCCCEEEEEECCCEEEEEECCCCcEEEEE
Confidence                                      33333332222222332    356779999999999999999999999999999


Q ss_pred             ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       444 ~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      .+|.++|++++|+|++++|+||+.||.|+|||
T Consensus       309 ~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-41  Score=312.04  Aligned_cols=293  Identities=16%  Similarity=0.108  Sum_probs=233.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883          130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT  209 (498)
Q Consensus       130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~  209 (498)
                      +.+.+.+++++|+|+.||.+. ++.|.+|++.++.....   ..+|...|++++|+|+|++|++|+.||.|+|||+.++.
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~---~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEI---YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEE---EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            455677899999999999985 56799999988744443   35788899999999999999999999999999998876


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDE  287 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  287 (498)
                      ........              +|..+|.+++|+|++++|++++.+  ..+++|++.+++....+.+|...|++++|+|.
T Consensus        92 ~~~~~~~~--------------~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~  157 (311)
T d1nr0a1          92 HILKTTIP--------------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS  157 (311)
T ss_dssp             CCEEEEEE--------------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS
T ss_pred             cccccccc--------------cccCcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            43222211              366689999999999999999864  56999999999998889999999999999854


Q ss_pred             CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883          288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS  367 (498)
Q Consensus       288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  367 (498)
                      ....|++|+.||.|++||++    ..+....+..|...|+++.|+|++++|++++.|+.|++||++...........   
T Consensus       158 ~~~~l~sgs~d~~i~i~d~~----~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~---  230 (311)
T d1nr0a1         158 RPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD---  230 (311)
T ss_dssp             SSCEEEEEETTSCEEEEETT----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT---
T ss_pred             ceeeeccccccccccccccc----ccccccccccccccccccccCcccccccccccccccccccccccccccccccc---
Confidence            44568899999999999998    77888899999999999999999999999999999999999874322111000   


Q ss_pred             ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883          368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT  447 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~  447 (498)
                                              .....+|..  .+    .+++|+|++++|++|+.||.|+|||+.+++++.++..|.
T Consensus       231 ------------------------~~~~~~h~~--~V----~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~  280 (311)
T d1nr0a1         231 ------------------------SLKNVAHSG--SV----FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT  280 (311)
T ss_dssp             ------------------------TSSSCSSSS--CE----EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             ------------------------ccccccccc--cc----cccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC
Confidence                                    000112221  12    233677799999999999999999999999999998665


Q ss_pred             C-CeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          448 S-PVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       448 ~-~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      . ....+.+.+++..|++++.||.|++||++
T Consensus       281 ~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         281 RIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            3 22333444456689999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-39  Score=308.64  Aligned_cols=291  Identities=15%  Similarity=0.157  Sum_probs=228.4

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM  210 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~  210 (498)
                      ..+|+|++|+|||++||+|+.||.|+|||+.+++.. ......+|..+|++++|+|++++|++++.|+.|+|||+.++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            467999999999999999999999999999877432 3344568889999999999999999999999999999987765


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee----EEEeccCCCeeEEEEeC
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTVCFGD  286 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~  286 (498)
                      .......              +|...|.+++|+|+++.|++|+.|+.|++|++......    .....|...|.+++|+ 
T Consensus        86 ~~~~~~~--------------~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-  150 (371)
T d1k8kc_          86 KPTLVIL--------------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH-  150 (371)
T ss_dssp             EEEEECC--------------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC-
T ss_pred             ccccccc--------------cccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccc-
Confidence            4333221              35568999999999999999999999999998765432    2334688999999998 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccC--------------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      |++.+|++|+.|+.|++||......              .+........|...|.+++|+|++++|++++.|+.|++||+
T Consensus       151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~  230 (371)
T d1k8kc_         151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  230 (371)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee
Confidence            7899999999999999999753211              13355667789999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY  432 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  432 (498)
                      ..                                  ...+..+..|...  +..    .+|+|++++|++|. |+.+++|
T Consensus       231 ~~----------------------------------~~~~~~~~~~~~~--v~s----~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         231 DK----------------------------------KMAVATLASETLP--LLA----VTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             GG----------------------------------TTEEEEEECSSCC--EEE----EEEEETTEEEEEET-TSSCEEE
T ss_pred             ec----------------------------------ccceeeeeccccc--cee----eeecCCCCEEEEEc-CCceEEE
Confidence            76                                  3556666666532  222    35567898888765 6666665


Q ss_pred             ECCC--CcEEEE---------------------------------------eccCCCCeeeeEEcCCCC----eEEEEeC
Q 010883          433 DLVS--GEQVAA---------------------------------------LKYHTSPVRDCSWHPSQP----MLVSSSW  467 (498)
Q Consensus       433 d~~~--~~~~~~---------------------------------------~~~h~~~v~~l~~sp~~~----~l~s~~~  467 (498)
                      ....  +.....                                       ...|.+.|+++++.+.+.    .|+|+|.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~  349 (371)
T d1k8kc_         270 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM  349 (371)
T ss_dssp             EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred             EeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcC
Confidence            4332  211100                                       013888999999987653    5899999


Q ss_pred             CCcEEEecCCC
Q 010883          468 DGDVVRWEFPG  478 (498)
Q Consensus       468 Dg~i~iw~~~~  478 (498)
                      ||.|++||+..
T Consensus       350 Dg~v~iW~~~~  360 (371)
T d1k8kc_         350 DGGMSIWDVRS  360 (371)
T ss_dssp             TSEEEEEEHHH
T ss_pred             CCeEEEEeCCc
Confidence            99999999854

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.6e-38  Score=288.65  Aligned_cols=289  Identities=17%  Similarity=0.231  Sum_probs=219.2

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD  204 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd  204 (498)
                      +.+.||.++|++++|+|||++||+|+.||+|++||+.+++....  ....|...|++++|+|++++ ++++.|+.+++|+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~--~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~   82 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV--FPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP   82 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC--SSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence            56789999999999999999999999999999999999865543  33567889999999999975 5667799999999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF  284 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  284 (498)
                      ..............             .+...+.+++|+++++.+++++ ++.+.+|+...  ....  .....+.+++|
T Consensus        83 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~--~~~~~~~~~~~  144 (299)
T d1nr0a2          83 AGGSGVDSSKAVAN-------------KLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEV--PISYNSSCVAL  144 (299)
T ss_dssp             SSSSSSCTTSCCEE-------------ECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEE--ECSSCEEEEEE
T ss_pred             cCCccccccccccc-------------cccccccccccccccccccccc-ccccccccccc--cccc--ccccccccccc
Confidence            87654322222111             2344789999999999776665 56899998543  2222  34456789999


Q ss_pred             eCCCCCEEEEeeCCCeEEEEcCccccCCCcee-EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883          285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  363 (498)
                      + +++++|++|+.||.|++||++    ..... .....|...|++++|+|++++|++++.|+.|++||+.+.....    
T Consensus       145 s-~~~~~l~~g~~dg~i~~~d~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~----  215 (299)
T d1nr0a2         145 S-NDKQFVAVGGQDSKVHVYKLS----GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA----  215 (299)
T ss_dssp             C-TTSCEEEEEETTSEEEEEEEE----TTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES----
T ss_pred             c-ccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            7 789999999999999999997    44433 2445688999999999999999999999999999987633211    


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE--EE
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VA  441 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~  441 (498)
                                                 ....+..|...  +    .+.+|+|++++|++|+.||.|++||+.++..  +.
T Consensus       216 ---------------------------~~~~~~~h~~~--v----~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         216 ---------------------------HTNSWTFHTAK--V----ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             ---------------------------CCCCCCCCSSC--E----EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             ---------------------------ccccccccccc--c----ccccccccccceEEEcCCCEEEEEECCCCCcceEE
Confidence                                       11122333321  2    2235677999999999999999999987653  33


Q ss_pred             EeccC-CCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883          442 ALKYH-TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       442 ~~~~h-~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~  477 (498)
                      ....| ...|.++.| +++++|++++.||.|++||++
T Consensus       263 ~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         263 IKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            33344 455666655 567899999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.1e-37  Score=283.47  Aligned_cols=261  Identities=16%  Similarity=0.219  Sum_probs=211.7

Q ss_pred             cccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883          113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV  192 (498)
Q Consensus       113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  192 (498)
                      ..+.+.-.......+.+|...|++++|+|+|++||+|+.||+|+|||+.++...... ....|..+|.+++|+|++++|+
T Consensus        40 v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~d~~~l~  118 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TIPVFSGPVKDISWDSESKRIA  118 (311)
T ss_dssp             EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EEECSSSCEEEEEECTTSCEEE
T ss_pred             EEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc-ccccccCccccccccccccccc
Confidence            334444444556678899999999999999999999999999999999887543332 2356777999999999999999


Q ss_pred             EEEC--CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeee
Q 010883          193 YASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLS  269 (498)
Q Consensus       193 ~~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~  269 (498)
                      +++.  +..++||++++++.....                .+|...|.+++|+|++++ |++|+.|+.|++||+++++..
T Consensus       119 ~~~~~~~~~~~v~~~~~~~~~~~l----------------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~  182 (311)
T d1nr0a1         119 AVGEGRERFGHVFLFDTGTSNGNL----------------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  182 (311)
T ss_dssp             EEECCSSCSEEEEETTTCCBCBCC----------------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             cccccccccccccccccccccccc----------------cccccccccccccccceeeecccccccccccccccccccc
Confidence            9886  456999999887654332                246678999999999885 788999999999999999999


Q ss_pred             EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-------ccccccEEEEEEcCCCCEEEEEe
Q 010883          270 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      ..+..|...|+++.|+ +++++|++++.|+.|++||++    .......+       .+|...|++++|+|++++|++|+
T Consensus       183 ~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~----~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs  257 (311)
T d1nr0a1         183 STFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  257 (311)
T ss_dssp             EEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccC-ccccccccccccccccccccc----cccccccccccccccccccccccccccCCCCCEEEEEe
Confidence            9999999999999998 789999999999999999997    44444443       35888999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee-EEEEEEEeccccCCCCcEEE
Q 010883          343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIY  421 (498)
Q Consensus       343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~  421 (498)
                      .||.|+|||+++                                  ++.+.++..+... .....+.+      ++.+|+
T Consensus       258 ~Dg~v~iwd~~t----------------------------------~~~~~~l~~~~~~~~~~~~~~~------~~~~l~  297 (311)
T d1nr0a1         258 ADKTIKIWNVAT----------------------------------LKVEKTIPVGTRIEDQQLGIIW------TKQALV  297 (311)
T ss_dssp             TTSEEEEEETTT----------------------------------TEEEEEEECCSSGGGCEEEEEE------CSSCEE
T ss_pred             CCCeEEEEECCC----------------------------------CcEEEEEECCCCccceEEEEEe------cCCEEE
Confidence            999999999987                                  3555666554322 12222222      456799


Q ss_pred             EEecCCeEEEEECC
Q 010883          422 TGSHDSCVYVYDLV  435 (498)
Q Consensus       422 ~g~~dg~i~iwd~~  435 (498)
                      +++.||.|++||.+
T Consensus       298 s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         298 SISANGFINFVNPE  311 (311)
T ss_dssp             EEETTCCEEEEETT
T ss_pred             EEECCCEEEEEeCC
Confidence            99999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=276.90  Aligned_cols=286  Identities=20%  Similarity=0.276  Sum_probs=223.7

Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      +.+..+++|...........+  .+..-......... -.|...|++++|+|++++|++|+ ||.|+|||+.++......
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~-~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~   88 (337)
T d1gxra_          13 YSFHVTADGQMQPVPFPPDAL--IGPGIPRHARQINT-LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV   88 (337)
T ss_dssp             CEEEECSSSCEEECCCCTTSS--SSTTCCSEEEEEEE-ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred             ccccCCCCCCEEeeccCCcce--ecCCCCCCceEEEE-CCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee
Confidence            345666666655443333221  11111122222222 26788999999999999999987 799999999876543322


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLI  292 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l  292 (498)
                      ...           ...+|...|.+++|+|++++|++|+.||.|++||+...  +....+..|...+.+++|+ +++.++
T Consensus        89 ~~~-----------~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l  156 (337)
T d1gxra_          89 SQL-----------DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDSKVC  156 (337)
T ss_dssp             EEE-----------ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-TTSSEE
T ss_pred             EEe-----------eecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccc-cccccc
Confidence            211           11257779999999999999999999999999998754  4556677899999999997 789999


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY  372 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  372 (498)
                      ++++.|+.|++||++    ..+.......|...|.+++|++++..+++++.|+.+++||+++.                 
T Consensus       157 ~s~~~d~~i~~~~~~----~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~-----------------  215 (337)
T d1gxra_         157 FSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-----------------  215 (337)
T ss_dssp             EEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----------------
T ss_pred             ccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccc-----------------
Confidence            999999999999998    77888888899999999999999999999999999999999873                 


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD  452 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  452 (498)
                                       +.+..+....   .+    .+.+|+|++++|++|+.|+.|++||+.+++... ...|...|++
T Consensus       216 -----------------~~~~~~~~~~---~i----~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~  270 (337)
T d1gxra_         216 -----------------RQLQQHDFTS---QI----FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLS  270 (337)
T ss_dssp             -----------------EEEEEEECSS---CE----EEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEE
T ss_pred             -----------------eeeccccccc---ce----EEEEEcccccccceecccccccccccccccccc-ccccccccce
Confidence                             3333333222   12    233567799999999999999999999888764 4569999999


Q ss_pred             eEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          453 CSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       453 l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ++|+|++++|++++.||.|++||+..+...
T Consensus       271 v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            999999999999999999999999877544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-36  Score=278.74  Aligned_cols=295  Identities=13%  Similarity=0.094  Sum_probs=219.7

Q ss_pred             CceEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCC--CCCeEEEEECCCeEEEEECCC
Q 010883          132 SRAYVSQFSADGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGS  207 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg-~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp--~~~~l~~~s~d~~i~iwd~~~  207 (498)
                      +.+++++|+|+|+.||.++.+. .|+.|+......... ....+| ...|++++|+|  ++++|++|+.||+|+|||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~-~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV-VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE-EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccce-EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            3467899999999999887554 355666543321112 222344 56899999998  568999999999999999876


Q ss_pred             CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 010883          208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFG  285 (498)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  285 (498)
                      ++...........        ....|.++|.+++|++++++|++++.  ++.+.+|+..+++.+..+.+|...|++++|+
T Consensus        97 ~~~~~~~~~~~~~--------~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  168 (325)
T d1pgua1          97 DKESNSVEVNVKS--------EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK  168 (325)
T ss_dssp             EGGGTEEEEEEEE--------EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred             Ccceeeeeccccc--------ccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccccccc
Confidence            6543332211100        00135568999999999999988764  6779999999999999999999999999998


Q ss_pred             CCCCCEEEEeeCCCeEEEEcCccccCCCceeEE---eccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV---LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      |....++++++.|+.+++||..    ..+....   ...|...|.+++|+|+ +.+|++++.|+.|++||+++       
T Consensus       169 ~~~~~~~~~~~~d~~v~~~d~~----~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-------  237 (325)
T d1pgua1         169 QSRPMRSMTVGDDGSVVFYQGP----PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-------  237 (325)
T ss_dssp             SSSSCEEEEEETTTEEEEEETT----TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-------
T ss_pred             ccccceEEEeeccccccccccc----ccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-------
Confidence            6656678899999999999986    3343333   3467788999999996 68899999999999999987       


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA  441 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  441 (498)
                                                 ++.+..+.+|.....  ...+++.+ |++++|++++.|+.|+|||+.+++++.
T Consensus       238 ---------------------------~~~~~~l~~~~~~v~--~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         238 ---------------------------GEFLKYIEDDQEPVQ--GGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             ---------------------------CCEEEECCBTTBCCC--SCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ---------------------------ccccccccccccccc--cceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence                                       345566666553222  11222222 478999999999999999999999998


Q ss_pred             EeccCCCC--eeeeEEcCC-CCeEEEEeCCCcEEEecC
Q 010883          442 ALKYHTSP--VRDCSWHPS-QPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       442 ~~~~h~~~--v~~l~~sp~-~~~l~s~~~Dg~i~iw~~  476 (498)
                      .+..|...  +..+++.+. +.+|++++.||.|++||+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            88766654  334444433 237899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=274.32  Aligned_cols=304  Identities=19%  Similarity=0.257  Sum_probs=229.6

Q ss_pred             CCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883          120 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI  199 (498)
Q Consensus       120 ~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~  199 (498)
                      +.+....|++|.+.|.+ +++++|++||+|+.||+|+|||+.+++.+..   ..+|...|.+++|+|+  +|++++.|+.
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~---~~~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEE---EeCCCCCEEEEEeCCC--ccccceeccc
Confidence            44556789999999975 4777899999999999999999999876553   4678889999999874  8999999999


Q ss_pred             EEEEECCCCceecccccccccc-------Ccccccc---------CCCCc------eecEEEEEEcCCCCEEEEEeCCCe
Q 010883          200 VHIVDVGSGTMESLANVTEIHD-------GLDFSAA---------DDGGY------SFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~---------~~~~h------~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      +++|+.................       .......         ...+.      ........+.+....+++++.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence            9999988765433222111000       0000000         00000      000111233345567899999999


Q ss_pred             EEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883          258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY  337 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  337 (498)
                      |++||....+.+..+.+|...+..+.+   ++.+|++|+.||.|++||++    ....+..+.+|...+.++.+++  ++
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~~--~~  229 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELKD--NI  229 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEET--TE
T ss_pred             EEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecc----cceeeeEecccccceeEEecCC--CE
Confidence            999999999999999889887777665   47799999999999999998    7888999999999999888865  59


Q ss_pred             EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee-EEEEEEEeccccCCC
Q 010883          338 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTG  416 (498)
Q Consensus       338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~  416 (498)
                      |++++.|+.|++||+...                                  +....+..+... .....      ++++
T Consensus       230 l~s~s~d~~i~iwd~~~~----------------------------------~~~~~~~~~~~~~~~~~~------~~~~  269 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTG----------------------------------QCLQTLQGPNKHQSAVTC------LQFN  269 (342)
T ss_dssp             EEEEETTSCEEEEETTTC----------------------------------CEEEEECSTTSCSSCEEE------EEEC
T ss_pred             EEEEcCCCEEEEEecccc----------------------------------cccccccccceeeeceee------cccC
Confidence            999999999999999873                                  233333332211 11121      2225


Q ss_pred             CcEEEEEecCCeEEEEECCCCcEEEEec-----cCCCCeeeeEEcCCCCeEEEEeCCCc----EEEecCCC
Q 010883          417 QKYIYTGSHDSCVYVYDLVSGEQVAALK-----YHTSPVRDCSWHPSQPMLVSSSWDGD----VVRWEFPG  478 (498)
Q Consensus       417 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~~l~s~~~Dg~----i~iw~~~~  478 (498)
                      ++++++|+.||.|++||+.+++.+..+.     +|...|++++|+|++.+|++|+.||+    |++||++.
T Consensus       270 ~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            6799999999999999999999988774     57788999999999999999999996    99999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-35  Score=279.24  Aligned_cols=264  Identities=14%  Similarity=0.112  Sum_probs=207.3

Q ss_pred             eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      .+|++++|+|++++||+++.|+.|+|||+.+++......+.              +|..+|.+++|+|++++|++|+.|+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~--------------gH~~~V~~l~fsp~~~~l~s~s~D~   73 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------------EHNGQVTGVDWAPDSNRIVTCGTDR   73 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------------CCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec--------------CCCCCEEEEEECCCCCEEEEEECCC
Confidence            47999999999999999999999999999877654333221              5788999999999999999999999


Q ss_pred             eEEEEECCCCeee--EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883          257 CIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD  334 (498)
Q Consensus       257 ~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  334 (498)
                      .|++||+.++...  ..+..|...|.+++|+ |+++.|++|+.|+.|++|++...............|...|.+++|+|+
T Consensus        74 ~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          74 NAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             eEEEEeecccccccccccccccccccccccc-cccccceeecccCcceeeeeeccccccccccccccccccccccccccc
Confidence            9999999877644  3445788999999998 789999999999999999987332222234456678899999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883          335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS  414 (498)
Q Consensus       335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  414 (498)
                      +++|++++.|+.|++||+...........                ............+.....|....      .+.+|+
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~v------~~~~~s  210 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAP----------------TPWGSKMPFGELMFESSSSCGWV------HGVCFS  210 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCC----------------BTTBSCCCTTCEEEECCCCSSCE------EEEEEC
T ss_pred             ccceeccccCcEEEEEeeccCcccccccc----------------ccccccccceeeeeeccCccCcE------EEEEee
Confidence            99999999999999999876432221100                00001111234445555555322      233677


Q ss_pred             CCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883          415 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG  478 (498)
Q Consensus       415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~  478 (498)
                      |++++|++++.|+.|++||+.+++.+..+..|..+|.+++|+|++++|++| .|+.+++|....
T Consensus       211 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~  273 (371)
T d1k8kc_         211 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  273 (371)
T ss_dssp             SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             cccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeC
Confidence            799999999999999999999999999999999999999999999877765 578777776554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=269.04  Aligned_cols=296  Identities=20%  Similarity=0.288  Sum_probs=216.6

Q ss_pred             EEEECCCeEEEEECCCCeEEEE-EeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc--Cc
Q 010883          147 VAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD--GL  223 (498)
Q Consensus       147 a~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~  223 (498)
                      +.+..++.+.+|+......... .....+|...|++++|+|||++|++|+ |+.|+|||+.+++............  ..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~  110 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE  110 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence            3456777888999765433322 222336888999999999999999986 8899999999887654433221110  01


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEE
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV  303 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~v  303 (498)
                      ........+|...|.+++|+|++++|++|+.||.|++||...++.+..+.+|...|.+++++ +++..+++++.++.+++
T Consensus       111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~~~i~~  189 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRI  189 (388)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccc-cccccccccccceeeee
Confidence            11122234577789999999999999999999999999999999999999999999999998 78899999999999999


Q ss_pred             EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccc
Q 010883          304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD  383 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (498)
                      ||.+    ..........+...+....+.+++++|++++.|+.|++||+++........                     
T Consensus       190 ~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---------------------  244 (388)
T d1erja_         190 WDLR----TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD---------------------  244 (388)
T ss_dssp             EETT----TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------------
T ss_pred             eecc----ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeec---------------------
Confidence            9997    556666555555544444445588999999999999999998743221110                     


Q ss_pred             ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE------------EEEeccCCCCee
Q 010883          384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ------------VAALKYHTSPVR  451 (498)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~------------~~~~~~h~~~v~  451 (498)
                            .......+|..  .+    .+++|+|++++|++|+.||.|++||+.++..            ......|...|+
T Consensus       245 ------~~~~~~~~h~~--~v----~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  312 (388)
T d1erja_         245 ------SENESGTGHKD--SV----YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL  312 (388)
T ss_dssp             ------------CCCSS--CE----EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred             ------cccccccCCCC--CE----EEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEE
Confidence                  01111122321  12    2335677999999999999999999876543            344557899999


Q ss_pred             eeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          452 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       452 ~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +++|+|++++|++|+.||.|++||+.+++.
T Consensus       313 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         313 SVATTQNDEYILSGSKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            999999999999999999999999987654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-33  Score=258.05  Aligned_cols=271  Identities=20%  Similarity=0.310  Sum_probs=216.9

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|.++|++++|+|++++|++|+.|++|+|||+.+++......                +|...|.+++|+|++.+++
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~----------------~h~~~V~~~~~~~~~~~~~   75 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK----------------GHTDSVQDISFDHSGKLLA   75 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC----------------CCSSCEEEEEECTTSSEEE
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe----------------CCCCcEEEEeeeccccccc
Confidence            346899999999999999999999999999999999887654432                4667899999999999999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      ++..++.+.+|+....+....+..|...+.++.|+ ++++.+++++.|+.+++||++    .+..+..+.+|...+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVRMVR  150 (317)
T ss_dssp             EEETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccceeeecc-CCCceEEeeccCcceeEeecc----cceeeeEEccCCCcceeee
Confidence            99999999999999998888888999999999998 788999999999999999998    7788889999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      |+|++.+|++++.|+.|++|++.+.........    ....+..+.+.+..........         .   .    ...
T Consensus       151 ~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~---------~---~----~~~  210 (317)
T d1vyhc1         151 PNQDGTLIASCSNDQTVRVWVVATKECKAELRE----HRHVVECISWAPESSYSSISEA---------T---G----SET  210 (317)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEEEEEECCSCGGGGGGGC---------C---S----CC-
T ss_pred             cccCCCEEEEEeCCCeEEEEeeccceeeEEEec----CCCCceEEEEeeccccceeecc---------c---c----cee
Confidence            999999999999999999999987443221110    0000111111111110000000         0   0    000


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .....++.++++++.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus       211 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  282 (317)
T d1vyhc1         211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM  282 (317)
T ss_dssp             ------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC
T ss_pred             eeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            012236788999999999999999999999999999999999999999999999999999999999876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-33  Score=259.70  Aligned_cols=286  Identities=20%  Similarity=0.272  Sum_probs=220.5

Q ss_pred             ccccCCCCce-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          125 WPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       125 ~~l~~h~~~v-~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ..|++|.+.| +|++|  +|++||+|+.||+|+|||+.+++.+..   ..+|...|++++|+|+ .+|++++.|+.|++|
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~---l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEE---EECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEE---EECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence            4688999886 55555  688999999999999999999866554   3578889999999985 589999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-----------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-----------  272 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-----------  272 (498)
                      +....+........              .+........+.+++.++++++.|+.|++||+.+.......           
T Consensus        80 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          80 DIKKGCCTHVFEGH--------------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             ETTTTEEEEEECCC--------------SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             cccccccccccccc--------------cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            99887654433322              12335677788899999999999999999999876543221           


Q ss_pred             ------------eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEE
Q 010883          273 ------------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS  340 (498)
Q Consensus       273 ------------~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  340 (498)
                                  ..|...+....   +++++++++..|+.|++||++    ..+.+....++...+.++.++|++.++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~d~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRCIS  218 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             ccccccceeeeeeeccccccccc---cccceeeeecccceeeeeecc----cccceeeeeccccccccccccccceeeec
Confidence                        12333333332   457899999999999999998    77888888889999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEE
Q 010883          341 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI  420 (498)
Q Consensus       341 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  420 (498)
                      ++.|+.|++||+++                                  ...+..+.+|.......      .+  ++++|
T Consensus       219 ~~~d~~i~i~d~~~----------------------------------~~~~~~~~~h~~~v~~~------~~--~~~~l  256 (355)
T d1nexb2         219 ASMDTTIRIWDLEN----------------------------------GELMYTLQGHTALVGLL------RL--SDKFL  256 (355)
T ss_dssp             EETTSCEEEEETTT----------------------------------CCEEEEECCCSSCCCEE------EE--CSSEE
T ss_pred             ccccceEEeeeccc----------------------------------ccccccccccccccccc------cc--cccee
Confidence            99999999999987                                  35666677776433322      22  46799


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeccCCCCeeeeE-EcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          421 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS-WHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       421 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ++|+.||.|++||+.++.....  .|...+.++. +++++.+|++| .||.|++||+.+++..
T Consensus       257 ~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         257 VSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBC
T ss_pred             eeeecccccccccccccceecc--cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            9999999999999988876543  4666666664 56666666655 5899999999887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=250.75  Aligned_cols=272  Identities=26%  Similarity=0.360  Sum_probs=218.2

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      ....|...|+|++|  ||++||+|+.||+|+|||+.+++.+..   ..+|...|++++|  ++++|++|+.|+.|++|++
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~---l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEE---EecCCCCEeeeec--ccceeeccccccccccccc
Confidence            34578889998764  799999999999999999999866654   3578889999987  6789999999999999999


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEEeccCCCeeEE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTV  282 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~  282 (498)
                      ..+.........                  ......+.+....++++..++.+.+|+......   ...+..|...+.++
T Consensus        83 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  144 (293)
T d1p22a2          83 NTGEMLNTLIHH------------------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  144 (293)
T ss_dssp             SSCCEEEEECCC------------------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             cccccccccccc------------------ccccccccccccceeecccccceeEeeccccccccccccccccccccccc
Confidence            887654433321                  112234455667899999999999999987653   34455788888888


Q ss_pred             EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883          283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN  362 (498)
Q Consensus       283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  362 (498)
                      .+.   ...+++++.|+.|++||++    ..+.+..+.++...+..+.++  +.++++++.|+.|++||+++.       
T Consensus       145 ~~~---~~~~~~~s~d~~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-------  208 (293)
T d1p22a2         145 DFD---DKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-------  208 (293)
T ss_dssp             EEE---TTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-------
T ss_pred             eec---ccccccccCCCceeeecCC----CCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc-------
Confidence            875   4578899999999999998    788888999999999888875  468999999999999999873       


Q ss_pred             cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC------
Q 010883          363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS------  436 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------  436 (498)
                                                 ..+..+.++.....        .+++++.+|++|+.||.|++||+.+      
T Consensus       209 ---------------------------~~~~~~~~~~~~v~--------~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  253 (293)
T d1p22a2         209 ---------------------------ACLRVLEGHEELVR--------CIRFDNKRIVSGAYDGKIKVWDLVAALDPRA  253 (293)
T ss_dssp             ---------------------------CEEEEECCCSSCEE--------EEECCSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred             ---------------------------eeeeeecccceeee--------eccccceEEEEEcCCCEEEEEECCCCccccc
Confidence                                       44555555543222        2334788999999999999999753      


Q ss_pred             ---CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          437 ---GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       437 ---~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                         ...+..+.+|.+.|++++|  ++.+|+|++.||+|++||
T Consensus       254 ~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         254 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             cCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence               3567888999999999999  466899999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-33  Score=260.16  Aligned_cols=312  Identities=15%  Similarity=0.208  Sum_probs=230.6

Q ss_pred             ccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC
Q 010883          110 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR  189 (498)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  189 (498)
                      +....+++....+....+.+|.++|++++|+|+ .+|++|+.|+.|++|+.......... ....+........+.++++
T Consensus        32 Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  109 (355)
T d1nexb2          32 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK  109 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccc-ccccccccccccccccccc
Confidence            344445555555556778999999999999986 58999999999999999988655543 3334445667788899999


Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccc-------cccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDF-------SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD  262 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd  262 (498)
                      ++++++.|+.|++|++.+..................       .......|...+.  .+.+++++++++..|+.|++||
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d  187 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWD  187 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeee
Confidence            999999999999999987654332221110000000       0000112333343  3455788999999999999999


Q ss_pred             CCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883          263 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      +.+++.+.....+...+.++.|+ +.+.++++++.|+.|++||++    .+..+..+.+|...|.++++++  ++|++++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~  260 (355)
T d1nexb2         188 VAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGLLRLSD--KFLVSAA  260 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TCCEEEEECCCSSCCCEEEECS--SEEEEEC
T ss_pred             cccccceeeeecccccccccccc-ccceeeecccccceEEeeecc----cccccccccccccccccccccc--ceeeeee
Confidence            99999998888899999999998 788999999999999999998    8888999999999999999964  6999999


Q ss_pred             CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      .||.|++||+++..                                  ..  +..|......     ...+++++++|++
T Consensus       261 ~dg~i~iwd~~~~~----------------------------------~~--~~~~~~~~~~-----~~~~~~~~~~l~~  299 (355)
T d1nexb2         261 ADGSIRGWDANDYS----------------------------------RK--FSYHHTNLSA-----ITTFYVSDNILVS  299 (355)
T ss_dssp             TTSEEEEEETTTCC----------------------------------EE--EEEECTTCCC-----CCEEEECSSEEEE
T ss_pred             cccccccccccccc----------------------------------ee--cccccCCceE-----EEEEcCCCCEEEE
Confidence            99999999998632                                  11  1111110100     1134557777776


Q ss_pred             EecCCeEEEEECCCCcEEE-EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883          423 GSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE  475 (498)
Q Consensus       423 g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~  475 (498)
                      | .||.|+|||+++++++. .+.+|.++|++++|+|+ .++++++.||.++||.
T Consensus       300 g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         300 G-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             E-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             E-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            6 58999999999999885 46789999999999987 4788899999976654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.6e-34  Score=263.77  Aligned_cols=313  Identities=9%  Similarity=-0.013  Sum_probs=219.7

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV  203 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iw  203 (498)
                      +.+++|++.|++++|+|++++||+|+.||+|+|||+.++..........+|..+|++++|+|++ .+|++|+.|+.|++|
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            4568999999999999999999999999999999997664444444444678899999999864 589999999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe----cc--CC
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL----AH--TS  277 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~----~~--~~  277 (498)
                      ++..+.........               +........+.++...+++++.++.+++||++.........    .+  ..
T Consensus        85 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          85 DLIGSPSFQALTNN---------------EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             CSSSSSSEEECBSC---------------CCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             eccccccccccccc---------------ccccccccccccccccccccccccccceeeccccccceeeecccccccccc
Confidence            99876654333221               11234455666788899999999999999986544322222    22  22


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      ....+.+. ..+..+++++.|+.|++||++........ .....+...+.+..+. .++..+++++.||.+.+|++....
T Consensus       150 ~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~  227 (342)
T d1yfqa_         150 KNKIFTMD-TNSSRLIVGMNNSQVQWFRLPLCEDDNGT-IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             CCCEEEEE-ECSSEEEEEESTTEEEEEESSCCTTCCCE-EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             eeeeeeee-ccCCceeeecCCCcEEEEecccCccccee-eeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCc
Confidence            33455555 66789999999999999999744322222 2333344555555554 467899999999999999987644


Q ss_pred             CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883          357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS  436 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~  436 (498)
                      ........                         ....................+.+|+|++++|++|+.||.|++||+.+
T Consensus       228 ~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         228 DDYNSSKR-------------------------FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             CSTTCTTC-------------------------EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             ceeecccc-------------------------ceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence            32221100                         00000000000000001112346778999999999999999999999


Q ss_pred             CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       437 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ++.+..+..+ ..+..++|+|++++|++++.|+.+++|......
T Consensus       283 ~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~  325 (342)
T d1yfqa_         283 RKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQT  325 (342)
T ss_dssp             TEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSSCTT
T ss_pred             CcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCCC
Confidence            9999888643 345667888899999999999999999875543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-32  Score=251.08  Aligned_cols=272  Identities=14%  Similarity=0.168  Sum_probs=206.5

Q ss_pred             CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      ...|.+|..+|++++|+|    |++|+.||+|++||+.++        ...|...|.++++++++ .+++++.|++|++|
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            456899999999999998    999999999999998764        14677789999998765 57899999999999


Q ss_pred             ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC  283 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  283 (498)
                      ++...+.                       ...+.++.+++++..++++ .++.+.+|+..+++.+..+.. ...+.+  
T Consensus        73 ~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~--  125 (287)
T d1pgua2          73 GITKHEF-----------------------GSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRL-NSPGSA--  125 (287)
T ss_dssp             TEEEEEC-----------------------SSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEEC-SSCEEE--
T ss_pred             ccccccc-----------------------ccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccc-cceeee--
Confidence            9754321                       1146788899888766655 566799999999988777643 344444  


Q ss_pred             EeCCCCCEEEEeeCC-CeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          284 FGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       284 ~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      ++ +++..+++++.+ +.+++|++.    .......+ ..|...+++++|+|++.+|++++.||.|++||+.+.....  
T Consensus       126 ~~-~~~~~~~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--  198 (287)
T d1pgua2         126 VS-LSQNYVAVGLEEGNTIQVFKLS----DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT--  198 (287)
T ss_dssp             EE-ECSSEEEEEETTTSCEEEEETT----EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred             ee-ccCcceeeeccccceeeeeecc----ccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccc--
Confidence            44 345667777666 479999986    33333333 3577889999999999999999999999999998743211  


Q ss_pred             ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc------ccCCCCcEEEEEecCCeEEEEECC
Q 010883          362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP------VYSTGQKYIYTGSHDSCVYVYDLV  435 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~s~~~~~l~~g~~dg~i~iwd~~  435 (498)
                                                     ..+..|..  .+....|+|      .+.+++.+|++|+.|+.|+|||+.
T Consensus       199 -------------------------------~~~~~h~~--~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         199 -------------------------------SRWAFRTS--KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             -------------------------------CCSCCCSS--CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             -------------------------------cccccccc--ccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence                                           11223332  122222332      235678899999999999999997


Q ss_pred             C-CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          436 S-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       436 ~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      + ++.+..+.+|...|++++|+|++ .|+|++.||.|++|++
T Consensus       246 ~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         246 RPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            7 56778888999999999999986 5899999999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-32  Score=251.94  Aligned_cols=250  Identities=16%  Similarity=0.172  Sum_probs=195.8

Q ss_pred             cccCC-CCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeE-----EEEEeecCCCceeEEEEEeCCCCCeEEEEEC-
Q 010883          126 PVDQT-TSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWK-----IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-  196 (498)
Q Consensus       126 ~l~~h-~~~v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-  196 (498)
                      .+.+| ...|++++|+|  +|++||+|+.||+|+|||+..+..     .........|.++|.+++|+|++++|++++. 
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            45566 56899999998  578999999999999999865321     1111123456778999999999999988765 


Q ss_pred             -CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEEe-
Q 010883          197 -SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRIL-  273 (498)
Q Consensus       197 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~~~~-  273 (498)
                       ++.+.+|+.++++......                +|...|.+++|+|++.+ +++++.|+.|++||+...+....+. 
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~  200 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVS----------------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  200 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECC----------------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             ccceEEEEeecccccceeee----------------ecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence             6689999998877544332                46778999999998875 6789999999999999888766654 


Q ss_pred             --ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc---CCCCEEEEEeCCCcEE
Q 010883          274 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR---GDGRYLISNGKDQAIK  348 (498)
Q Consensus       274 --~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~~~l~s~~~dg~i~  348 (498)
                        .|...|.+++|+|..+.+|++++.||.|++||++    .++.+..+.+|..++..+.|+   |++++|++++.|+.|+
T Consensus       201 ~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~----~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~  276 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR  276 (325)
T ss_dssp             SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred             ccCCCCccEEeeeccccceeccccccccceeeeeec----cccccccccccccccccceeeeeccCCCEEEEEeCCCeEE
Confidence              5677899999996678999999999999999998    788889999888887666555   6899999999999999


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE--EEEEEeccccCCCCcEEEEEecC
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT--LIRCHFSPVYSTGQKYIYTGSHD  426 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~d  426 (498)
                      |||+++                                  ++.+..+..+.....  ...+.+.     .+.+|++++.|
T Consensus       277 iwd~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~s~d  317 (325)
T d1pgua1         277 VWDVTT----------------------------------SKCVQKWTLDKQQLGNQQVGVVAT-----GNGRIISLSLD  317 (325)
T ss_dssp             EEETTT----------------------------------TEEEEEEECCTTCGGGCEEEEEEE-----ETTEEEEEETT
T ss_pred             EEECCC----------------------------------CCEEEEEEecCCcccCeEEEEEEC-----CCCEEEEEECC
Confidence            999987                                  355555554443222  2222222     24578999999


Q ss_pred             CeEEEEEC
Q 010883          427 SCVYVYDL  434 (498)
Q Consensus       427 g~i~iwd~  434 (498)
                      |.|++||+
T Consensus       318 g~i~vwdl  325 (325)
T d1pgua1         318 GTLNFYEL  325 (325)
T ss_dssp             SCEEEEET
T ss_pred             CEEEEEEC
Confidence            99999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=7.9e-32  Score=253.19  Aligned_cols=314  Identities=12%  Similarity=0.051  Sum_probs=227.2

Q ss_pred             EEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC--eEEEEECCCCcee
Q 010883          135 YVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTME  211 (498)
Q Consensus       135 ~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~--~i~iwd~~~~~~~  211 (498)
                      +.-.||| ||+++|+++ +|.|++||+.++...+     ..|...|.+++|+|||++|++++.+.  .|++||+.+++..
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-----~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-----VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-----CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-----ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            4567999 999999986 5799999998875433     25677899999999999999877654  7999999988765


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCE
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL  291 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  291 (498)
                      ...                 .|...|.+++|+|+|++|++++.++.+++|++.+++....+..|...+.+++|+ +++++
T Consensus        80 ~~~-----------------~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~  141 (360)
T d1k32a3          80 KFE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS-DNSRF  141 (360)
T ss_dssp             ECC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-TTSCE
T ss_pred             Eee-----------------CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhc-cceee
Confidence            432                 355689999999999999999999999999999999988888999999999998 78888


Q ss_pred             EEEee----------CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883          292 IYSGS----------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC  361 (498)
Q Consensus       292 l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  361 (498)
                      |+.+.          .++.+++||+.    . .....+..+...+..+.|+|+|++|++++.++.+.+||..........
T Consensus       142 la~~~~~~~~~~~~~~~~~~~v~d~~----~-~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~  216 (360)
T d1k32a3         142 IAYGFPLKHGETDGYVMQAIHVYDME----G-RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV  216 (360)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEETT----T-TEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCS
T ss_pred             eeeeccccccceeeccccceeeeccc----c-CceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeecc
Confidence            88543          45579999986    3 344555667788899999999999999999999999998664322111


Q ss_pred             ccCcc---cccccceeecCCcCcccccC----------------CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          362 NLGFR---SYEWDYRWMDYPPQARDLKH----------------PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       362 ~~~~~---~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      .....   ..........+.++...+..                ........+..+..   .........+++++.++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  293 (360)
T d1k32a3         217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES---SILIYSVPVHGEFAAYYQG  293 (360)
T ss_dssp             CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS---EEEEEECCCCCSHHHHHHC
T ss_pred             ccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCC---CceEEEEEecCCCeeEEEe
Confidence            00000   00000111111111111100                00111111111111   1122233455566677888


Q ss_pred             EecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883          423 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP  484 (498)
Q Consensus       423 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~  484 (498)
                      ++.++.|++||+.+++..    .|.+.|.+++|+|||++|++++.||.|++||+..++....
T Consensus       294 ~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~  351 (360)
T d1k32a3         294 APEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT  351 (360)
T ss_dssp             CCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred             cCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence            899999999999887653    2345699999999999999999999999999988876543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-31  Score=251.45  Aligned_cols=300  Identities=12%  Similarity=0.131  Sum_probs=200.4

Q ss_pred             cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE---EEEeecCCCce------eEEEEEeCC-CCCeEEEEE
Q 010883          126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRW------TVTDTSLSP-DQRHLVYAS  195 (498)
Q Consensus       126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~------~v~~~~~sp-~~~~l~~~s  195 (498)
                      ..++|.+.|+++++++  ++|++|+.|++|+|||..+....   ........|..      ....+..++ ++.++++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3479999999999875  68999999999999997653110   00000111111      122223222 345778899


Q ss_pred             CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCe---
Q 010883          196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLEANK---  267 (498)
Q Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----g~~l~~g~~dg~i~vwd~~~~~---  267 (498)
                      .||.|++|++..............      .......+...+..++|.++     +.++++++.||.|++|++....   
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKL------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEE------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             CCCcEEEEEccCCCceeeeecccc------ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            999999999765433222111110      00111224446778888775     4678999999999999985321   


Q ss_pred             ------------eeE---EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE------EeccccccE
Q 010883          268 ------------LSL---RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG------VLMGHLEGI  326 (498)
Q Consensus       268 ------------~~~---~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~v  326 (498)
                                  ...   ....+...+.+++|+ +++ +|++|+.||+|++||+.    .++++.      .+.+|..+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg-~lasgs~Dg~i~iwd~~----~~~~~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYNFESQHSMINNSNSI  234 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEEEECCC---CCCCCE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEEC-CCC-EEEEEeCCCcEEEEeec----ccccccccccccccccccceE
Confidence                        001   112455678999998 555 89999999999999997    555443      345789999


Q ss_pred             EEEEEcCCCCEEEEEeCCCc---EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883          327 TFIDSRGDGRYLISNGKDQA---IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT  403 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (498)
                      ++++|+|++++|++|+.|++   |++||+.+..........                     .........+.+|.... 
T Consensus       235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~---------------------~~~~~~~~~~~gH~~~V-  292 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP---------------------THSSQASLGEFAHSSWV-  292 (393)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------CCBSBSSCE-
T ss_pred             EEcccccccceeeeecCCCCcceeeecccccceeeeeeccc---------------------cccccceeeeecccCce-
Confidence            99999999999999999874   899999875432221100                     00012223334565332 


Q ss_pred             EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCee----eeEEcCCCCeEEEEe
Q 010883          404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR----DCSWHPSQPMLVSSS  466 (498)
Q Consensus       404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~----~l~~sp~~~~l~s~~  466 (498)
                           .+.+|+||+++|++|+.|++|+|||+.+++++.++++|.+.|.    .++|+|++..+++++
T Consensus       293 -----~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         293 -----MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             -----EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             -----eeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence                 3346778999999999999999999999999999999987775    477888887776554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-30  Score=237.23  Aligned_cols=247  Identities=17%  Similarity=0.236  Sum_probs=191.7

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|...|++++|+|++++|++|+.|+.|++||+.+++......               .+|...|.+++|+|+++ ++
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------~~h~~~v~~v~~~~~g~-~~   70 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---------------DVHATMITGIKTTSKGD-LF   70 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS---------------CSCSSCEEEEEECTTSC-EE
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---------------CCCCCcEEEEEeeccce-ee
Confidence            457899999999999999999999999999999999887654432               14667899999999997 55


Q ss_pred             EEeCCCeEEEEECCCCee---eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883          251 AGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT  327 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  327 (498)
                      +++.|+.+++|+......   ......+...+.+++|+ +++.++++++ ++.+++|+..      +.....  ....+.
T Consensus        71 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~~~~~-~~~i~~~~~~------~~~~~~--~~~~~~  140 (299)
T d1nr0a2          71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS-ADGDIAVAAC-YKHIAIYSHG------KLTEVP--ISYNSS  140 (299)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC-TTSSCEEEEE-SSEEEEEETT------EEEEEE--CSSCEE
T ss_pred             cccceeeEEEeccCCccccccccccccccccccccccc-cccccccccc-cccccccccc------cccccc--cccccc
Confidence            667899999999865432   12234677889999998 6777666554 5789999853      222222  335678


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883          328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC  407 (498)
Q Consensus       328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (498)
                      +++|+|++++|++++.|+.|++||+++...                                ..+ ....|..  .+   
T Consensus       141 ~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~--------------------------------~~~-~~~~~~~--~i---  182 (299)
T d1nr0a2         141 CVALSNDKQFVAVGGQDSKVHVYKLSGASV--------------------------------SEV-KTIVHPA--EI---  182 (299)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEEEETTEE--------------------------------EEE-EEEECSS--CE---
T ss_pred             cccccccccccccccccccccccccccccc--------------------------------ccc-ccccccc--cc---
Confidence            899999999999999999999999876321                                011 1112221  12   


Q ss_pred             EeccccCCCCcEEEEEecCCeEEEEECCCCcEEE---EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA---ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                       .+.+|+|++++|++++.|+.|++||+.++..+.   .+.+|..+|++++|+|++++|++|+.||.|++||+......
T Consensus       183 -~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         183 -TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             -EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence             223567799999999999999999998876653   44578999999999999999999999999999999876543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.7e-29  Score=232.63  Aligned_cols=249  Identities=20%  Similarity=0.297  Sum_probs=208.7

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|.+.|++++|+|++++|++|+.||.|+|||+.+++......                +|..+|.+++|+|++++++
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~----------------~~~~~v~~v~~~~~~~~l~  113 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP----------------LRSSWVMTCAYAPSGNYVA  113 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE----------------CSCSCEEEEEECTTSSEEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe----------------cccccEEeeEeeccceeee
Confidence            346899999999999999999999999999999999887654433                3566899999999999999


Q ss_pred             EEeCCCeEEEEECCCCe----eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883          251 AGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI  326 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v  326 (498)
                      +|+.|+.+.+|+.....    ....+.+|..........  .+..+.....|.....+...    ..........+...+
T Consensus       114 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  187 (340)
T d1tbga_         114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDV  187 (340)
T ss_dssp             EEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE--ETTEEEEEETTTEEEEEETT----TTEEEEEEECCSSCE
T ss_pred             eecccceeecccccccccccccceecccccccccccccc--cccccccccccccccccccc----cccccccccccceeE
Confidence            99999999999986643    345566777776666654  45678888899999999886    666666777788889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      ....+.+.+.++++++.|+.|++||+++                                  ...+..+.+|.....   
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~----------------------------------~~~~~~~~~h~~~i~---  230 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVRE----------------------------------GMCRQTFTGHESDIN---  230 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTT----------------------------------TEEEEEECCCSSCEE---
T ss_pred             eeeccccccceeEEeecCceEEEEECCC----------------------------------CcEEEEEeCCCCCeE---
Confidence            9999999999999999999999999987                                  356677777764322   


Q ss_pred             EEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                         +.+|+|++++|++|+.||.|++||+.....+..+.  .|...|++++|+|++++|++|+.||.|++||+..++.
T Consensus       231 ---~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         231 ---AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             ---EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             ---EEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE
Confidence               23567799999999999999999999988877664  5677899999999999999999999999999987654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.3e-29  Score=236.07  Aligned_cols=272  Identities=13%  Similarity=0.149  Sum_probs=182.9

Q ss_pred             EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCC-ceecEEEEEEcC-
Q 010883          167 QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG-YSFGIFSLKFST-  244 (498)
Q Consensus       167 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~-  244 (498)
                      .......+|...|.++++++  ++|++++.|++|+|||..+.+...........     ..+.... |......+..+. 
T Consensus         5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~   77 (393)
T d1sq9a_           5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-----FVHKSGLHHVDVLQAIERDAF   77 (393)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-----ECCTTCEEEEEEEEEEETTTE
T ss_pred             eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEee-----eeccCCceEeeeEeeeccCCC
Confidence            34456689999999999865  79999999999999998765432111100000     0000000 111222223222 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEEE----------eccCCCeeEEEEeCC----CCCEEEEeeCCCeEEEEcCcccc
Q 010883          245 DGRELVAGSSDDCIYVYDLEANKLSLRI----------LAHTSDVNTVCFGDE----SGHLIYSGSDDNLCKVWDRRCLN  310 (498)
Q Consensus       245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~----------~~~~~~v~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~  310 (498)
                      ++.++++++.||.|++|++........+          ..+...+..++|.+.    .+.++++++.||.+++|++....
T Consensus        78 ~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~  157 (393)
T d1sq9a_          78 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA  157 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred             CCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCC
Confidence            3356789999999999997644321111          124456777888632    24688999999999999975221


Q ss_pred             C-------CCc-------eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeec
Q 010883          311 V-------KGK-------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD  376 (498)
Q Consensus       311 ~-------~~~-------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  376 (498)
                      .       ...       .......+...+.+++|+|++ +|++|+.|+.|++||+.+.                     
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~---------------------  215 (393)
T d1sq9a_         158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---------------------  215 (393)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---------------------
T ss_pred             cccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc---------------------
Confidence            0       000       111122345568899999997 8999999999999999873                     


Q ss_pred             CCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEec---------
Q 010883          377 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALK---------  444 (498)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~---------  444 (498)
                                   +.+..+..............+++|+|||++|++|+.|+   .|++||+.+++.+..+.         
T Consensus       216 -------------~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~  282 (393)
T d1sq9a_         216 -------------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  282 (393)
T ss_dssp             -------------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             -------------ccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccce
Confidence                         33333322211111111223446788999999999987   49999999998887764         


Q ss_pred             ----cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          445 ----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       445 ----~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                          +|.+.|++++|+|++++|+|++.|++|++||+.++.
T Consensus       283 ~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         283 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             -CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             eeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence                799999999999999999999999999999998764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.6e-29  Score=229.30  Aligned_cols=263  Identities=12%  Similarity=0.113  Sum_probs=190.5

Q ss_pred             eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCE
Q 010883          170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRE  248 (498)
Q Consensus       170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~  248 (498)
                      ...++|...|++|+|+|++++||+|+.||+|+|||+.++..........             +|..+|.+++|+|+ +.+
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~-------------~h~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-------------RYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-------------ECSSCEEEEEEEESSSEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec-------------CCCCCEEEEEEeCCCCCE
Confidence            3567888899999999999999999999999999997654322221111             36669999999986 458


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc--ccE
Q 010883          249 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL--EGI  326 (498)
Q Consensus       249 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~v  326 (498)
                      |++|+.||.|++|++...........+...+....+.+++...+++++.++.+++||++..............+.  ...
T Consensus        72 l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             EEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccccccee
Confidence            999999999999999988877776666655554444447788999999999999999874433333333333332  234


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      ..+.+.+++..+++++.|+.|++||++........                               ........  ....
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-------------------------------~~~~~~~~--~~~~  198 (342)
T d1yfqa_         152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT-------------------------------IEESGLKY--QIRD  198 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCE-------------------------------EEECSCSS--CEEE
T ss_pred             eeeeeeccCCceeeecCCCcEEEEecccCccccee-------------------------------eeeccccc--ceee
Confidence            45667778889999999999999999875432211                               11111111  1111


Q ss_pred             EEeccccCCCCcEEEEEecCCeEEEEECCCCcE---------EEE------eccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883          407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ---------VAA------LKYHTSPVRDCSWHPSQPMLVSSSWDGDV  471 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~---------~~~------~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i  471 (498)
                      ..   .++.++..+++++.||.+.+|+......         ...      ...|...|++++|+|++++|+||+.||.|
T Consensus       199 ~~---~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v  275 (342)
T d1yfqa_         199 VA---LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII  275 (342)
T ss_dssp             EE---ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred             eE---eecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEE
Confidence            11   2334788999999999999999764321         111      12567789999999999999999999999


Q ss_pred             EEecCCCCCC
Q 010883          472 VRWEFPGNGE  481 (498)
Q Consensus       472 ~iw~~~~~~~  481 (498)
                      ++||+.+...
T Consensus       276 ~vWD~~~~~~  285 (342)
T d1yfqa_         276 SCWNLQTRKK  285 (342)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEECCCCcE
Confidence            9999987643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.8e-27  Score=216.54  Aligned_cols=241  Identities=24%  Similarity=0.383  Sum_probs=183.1

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|...|.+ +++++|++|++|+.||+|+|||+.+++....+.                +|...|.+++|+++  +|+
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~----------------~h~~~V~~v~~~~~--~l~   71 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV----------------GHTGGVWSSQMRDN--III   71 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC----------------CCSSCEEEEEEETT--EEE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe----------------CCCCCEEEEEeCCC--ccc
Confidence            34688888865 466789999999999999999999987654432                57779999999875  899


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEE--------------------------------------EEeCCCCCEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTV--------------------------------------CFGDESGHLI  292 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~--------------------------------------~~~~~~~~~l  292 (498)
                      +|+.|+.+++|+............+...+...                                      .+. .....+
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  150 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ-YDGRRV  150 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE-ECSSCE
T ss_pred             cceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeec-ccccee
Confidence            99999999999988765443332222221111                                      111 234567


Q ss_pred             EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883          293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY  372 (498)
Q Consensus       293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  372 (498)
                      ++++.|+.|++||.+    ....+..+.+|...+..+.+  ++.+|++++.||.|++||++.                  
T Consensus       151 ~~~~~d~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~------------------  206 (342)
T d2ovrb2         151 VSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET------------------  206 (342)
T ss_dssp             EEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT------------------
T ss_pred             eeecCCCeEEEeecc----cceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeeccc------------------
Confidence            788889999999987    67778888888877766655  678999999999999999987                  


Q ss_pred             eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc---CCCC
Q 010883          373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSP  449 (498)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~  449 (498)
                                      .+.+..+..|......        +++++++|++|+.||.|++||+...+....+..   |...
T Consensus       207 ----------------~~~~~~~~~~~~~v~~--------~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  262 (342)
T d2ovrb2         207 ----------------GNCIHTLTGHQSLTSG--------MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA  262 (342)
T ss_dssp             ----------------CCEEEEECCCCSCEEE--------EEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred             ----------------ceeeeEecccccceeE--------EecCCCEEEEEcCCCEEEEEecccccccccccccceeeec
Confidence                            3556666666643322        223567999999999999999999988877764   5566


Q ss_pred             eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          450 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       450 v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      +.++.++  ++++++|+.||.|++||+.+++.
T Consensus       263 ~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         263 VTCLQFN--KNFVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             EEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             eeecccC--CCeeEEEcCCCEEEEEECCCCCE
Confidence            6666664  56999999999999999987754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-25  Score=202.86  Aligned_cols=242  Identities=21%  Similarity=0.357  Sum_probs=189.4

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ....|...|+|++|  ++++||+|+.||+|+|||+.+++....+.                +|..+|.+++|  ++++|+
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~----------------~H~~~V~~v~~--~~~~l~   69 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT----------------GHTGSVLCLQY--DERVII   69 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC----------------CCSSCEEEEEC--CSSEEE
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEe----------------cCCCCEeeeec--ccceee
Confidence            34566778998765  79999999999999999999887765443                57779999987  578999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      +|+.|+.|++|++..+........+......  +. .....++++..++.+.+||..... .......+..|...+..+.
T Consensus        70 s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~  145 (293)
T d1p22a2          70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LR-FNNGMMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVD  145 (293)
T ss_dssp             EEETTSCEEEEESSSCCEEEEECCCCSCEEE--EE-CCTTEEEEEETTSCEEEEECSSSS-CCEEEEEECCCSSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccc--cc-ccccceeecccccceeEeeccccc-cccccccccccccccccce
Confidence            9999999999999998877666554443333  33 456688999999999999987432 3344556677888888888


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883          331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS  410 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (498)
                      +.+  ..+++++.|+.|++||+++.                                  +.+..+.++......      
T Consensus       146 ~~~--~~~~~~s~d~~i~~~d~~~~----------------------------------~~~~~~~~~~~~v~~------  183 (293)
T d1p22a2         146 FDD--KYIVSASGDRTIKVWNTSTC----------------------------------EFVRTLNGHKRGIAC------  183 (293)
T ss_dssp             EET--TEEEEEETTSEEEEEETTTC----------------------------------CEEEEEECCSSCEEE------
T ss_pred             ecc--cccccccCCCceeeecCCCC----------------------------------cEEEEEccccccccc------
Confidence            765  57889999999999999873                                  455556555532221      


Q ss_pred             cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                        +++++.++++++.||.|++||+.+.+.+..+.+|...|..  +++++.+|++++.||.|++||+......
T Consensus       184 --~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~  251 (293)
T d1p22a2         184 --LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDP  251 (293)
T ss_dssp             --EEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTST
T ss_pred             --ccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccc
Confidence              1225678999999999999999999999999999888875  4557889999999999999998665443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=6e-26  Score=218.04  Aligned_cols=312  Identities=12%  Similarity=-0.003  Sum_probs=205.3

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCcc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD  224 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (498)
                      ++++.+.||+|+|||+.+++.+..+..   +. .+..++|||||++|++++.|++|++||+.+++......+...     
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~---g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~-----  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDT---GY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-----  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEEC---CS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-----
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC---CC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC-----
Confidence            567788899999999999977776432   22 589999999999999999999999999999876544333221     


Q ss_pred             ccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC-----
Q 010883          225 FSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-----  298 (498)
Q Consensus       225 ~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-----  298 (498)
                            .+|...+.+++|+|||++++++ ..++.+.+||..++++...+..|...+..+.+.+......++.+.|     
T Consensus       105 ------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~  178 (426)
T d1hzua2         105 ------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  178 (426)
T ss_dssp             ------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             ------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence                  1355678888999999987555 5789999999999998887776655554444432222223333333     


Q ss_pred             ------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCCCccccccCccccccc
Q 010883          299 ------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWD  371 (498)
Q Consensus       299 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~  371 (498)
                            +.+.+++...   ..........+...+..+.++|++++++++.. +..+.+++..+.................
T Consensus       179 ~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         179 VNVKETGKVLLVNYKD---IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             EEETTTTEEEEEECSS---SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred             EecCCCCeEEEEEecc---ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence                  3444444331   11122233456778899999999998877764 5668899988766543332211110000


Q ss_pred             -----------ceeecCCcCcc---------cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE-------Ee
Q 010883          372 -----------YRWMDYPPQAR---------DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-------GS  424 (498)
Q Consensus       372 -----------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-------g~  424 (498)
                                 ........+..         .......+....+.+|...      .+..+|+||+++|++       ++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~------v~~v~~sPdg~~l~v~~~~~~s~~  329 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG------SLFIKTHPKSSHLYVDTTFNPDAR  329 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSC------CCCEECCTTCSEEEECCTTCSSHH
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCc------eeEEEcCCCCceEEEeecCCCCcc
Confidence                       00001111110         1111122445556655422      234478999999995       45


Q ss_pred             cCCeEEEEECCCCcEEEEe---------ccCCCCeeeeEEcCCCCeEE-EE----eCCCcEEEecCCCCC
Q 010883          425 HDSCVYVYDLVSGEQVAAL---------KYHTSPVRDCSWHPSQPMLV-SS----SWDGDVVRWEFPGNG  480 (498)
Q Consensus       425 ~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~l~~sp~~~~l~-s~----~~Dg~i~iw~~~~~~  480 (498)
                      .+++|+|||+.+++...++         ..|...|.+++|||||++++ ++    +.||.|+|||..+.+
T Consensus       330 ~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         330 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             cCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            6889999999998766544         24566799999999999664 43    357889999988875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.6e-25  Score=209.64  Aligned_cols=256  Identities=17%  Similarity=0.128  Sum_probs=183.8

Q ss_pred             CCCCceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883          129 QTTSRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG  206 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~  206 (498)
                      .|...|.+++|||||++|++++.+.  .|++||+.++...    ....|...|.+++|+|++++|++++.++.+++|++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE----EeeCCCceEEeeeecccccccceecccccccccccc
Confidence            6899999999999999998876553  7999999987432    235677789999999999999999999999999999


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEEeccC
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~----------~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                      +++......                .|...+.+++|+|+|++|+.+.          .++.+++||+.+++.. .+..+.
T Consensus       116 ~~~~~~~~~----------------~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~  178 (360)
T d1k32a3         116 TGKPTVIER----------------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTEN  178 (360)
T ss_dssp             TCCEEEEEE----------------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSS
T ss_pred             ccceeeeee----------------cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee-eecccc
Confidence            887654433                2334688899999999998654          3456999999988764 445677


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC---CCceeEEecc--------------------------------
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMG--------------------------------  321 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--------------------------------  321 (498)
                      ..+..++|+ ++++.|++++.++.+.+||......   .......+..                                
T Consensus       179 ~~~~~~~~s-pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  257 (360)
T d1k32a3         179 SHDYAPAFD-ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS  257 (360)
T ss_dssp             SBEEEEEEC-TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCE
T ss_pred             ccccccccc-CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeeccccccee
Confidence            888999998 7899999999999999998642110   0000111100                                


Q ss_pred             ----ccccEEEEEEcCCC-------------CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883          322 ----HLEGITFIDSRGDG-------------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL  384 (498)
Q Consensus       322 ----~~~~v~~l~~~~~~-------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (498)
                          ..+....+...+++             .++++++.++.|++||+.+.                             
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------------------  308 (360)
T d1k32a3         258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-----------------------------  308 (360)
T ss_dssp             ECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-----------------------------
T ss_pred             ecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC-----------------------------
Confidence                11112222222222             12344555677788887652                             


Q ss_pred             cCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCe
Q 010883          385 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV  450 (498)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v  450 (498)
                            .+..+         .....+++|||||++|++++.||.|++||+.+++...++..+..|+
T Consensus       309 ------~~~~~---------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         309 ------KVTEV---------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             ------CEEEE---------EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             ------eEEEe---------cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence                  11111         1123455788999999999999999999999998888877665554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=2.6e-23  Score=189.36  Aligned_cols=266  Identities=14%  Similarity=0.091  Sum_probs=196.9

Q ss_pred             EEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE-EEECCCeEEEEECCCCceeccccccccccCccc
Q 010883          147 VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDF  225 (498)
Q Consensus       147 a~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  225 (498)
                      ++++.|++|.|||+.+++.+..... .   ..+..++|+|||++|+ +++.++.|++||+.+++........        
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-g---~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--------   73 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-G---SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--------   73 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-S---SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--------
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-C---CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc--------
Confidence            4567899999999999976655432 2   2478899999999885 5567899999999998875543321        


Q ss_pred             cccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCE-EEEeeCCCeEEE
Q 010883          226 SAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL-IYSGSDDNLCKV  303 (498)
Q Consensus       226 ~~~~~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~s~dg~i~v  303 (498)
                               ..+..++|++++..+++ +..++.+.+|+..+++....+.. ...+.++.|+ +++.. ++++..++.+.+
T Consensus        74 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          74 ---------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS-PDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             ---------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC-TTSSEEEEEETTTTEEEE
T ss_pred             ---------ccccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEee-cCCCeeeeeeccccceee
Confidence                     14688999999986655 45677899999999988877754 4567889998 55554 566677889999


Q ss_pred             EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883          304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR  382 (498)
Q Consensus       304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      |+..    .......+.. ...+..+.++|++..+++++.+ +.+.+|+....                           
T Consensus       143 ~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  190 (301)
T d1l0qa2         143 INTV----TKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------------------------  190 (301)
T ss_dssp             EETT----TTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------------------------
T ss_pred             eecc----ccceeeeccc-CCCceEEEeeccccceeeecccccccccccccce---------------------------
Confidence            9997    6666666554 4567889999999988887766 55667776552                           


Q ss_pred             cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCC
Q 010883          383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ  459 (498)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~  459 (498)
                             ........+...       ....+++++..+++++.   ++.|++||+.+++.+..+..+ ..+.+++|+|||
T Consensus       191 -------~~~~~~~~~~~~-------~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg  255 (301)
T d1l0qa2         191 -------SVIDTVKVEAAP-------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDG  255 (301)
T ss_dssp             -------EEEEEEECSSEE-------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTS
T ss_pred             -------eeeecccccCCc-------ceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCC
Confidence                   222333322211       22356668888876654   468999999999999888744 568999999999


Q ss_pred             CeE-EEEeCCCcEEEecCCCCCCC
Q 010883          460 PML-VSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       460 ~~l-~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      ++| ++++.|+.|++||+.+++..
T Consensus       256 ~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         256 KKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCeEE
Confidence            976 67778999999999877543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2e-24  Score=207.01  Aligned_cols=332  Identities=11%  Similarity=-0.035  Sum_probs=211.9

Q ss_pred             CCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCCCCeE-EEEECC
Q 010883          121 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMS  197 (498)
Q Consensus       121 ~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~s~d  197 (498)
                      .+....+..+ ..+..++|||||++|++++.|+.|++||+.+++  ....+.....|.+.+.+..|+|||++| ++++.+
T Consensus        52 ~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~  130 (432)
T d1qksa2          52 YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP  130 (432)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC
Confidence            3334445555 369999999999999999999999999998764  333444445666778888899999986 667789


Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEEe-cc
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRIL-AH  275 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~~~-~~  275 (498)
                      +.|++||..+++..............     ....+......+.++|+|..++ +...++.|.+||..+.+...... .+
T Consensus       131 ~~v~i~d~~t~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~  205 (432)
T d1qksa2         131 PQYVIMDGETLEPKKIQSTRGMTYDE-----QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA  205 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECCEECTTT-----CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred             CeEEEEeCccccceeeeccCCccccc-----eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence            99999999998876654432211100     0112334677899999998764 55667999999998876544332 45


Q ss_pred             CCCeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEec-----cccccEEEEEEcCCCCEEEEEe-CCCcEE
Q 010883          276 TSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLM-----GHLEGITFIDSRGDGRYLISNG-KDQAIK  348 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~l~s~~-~dg~i~  348 (498)
                      ...+..++|+ ++++++++++ .++.+.++|..    ..+.+..+.     .|........+...+...++.. .++.|.
T Consensus       206 g~~~~~~~~s-pdg~~~~va~~~~~~v~v~d~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~  280 (432)
T d1qksa2         206 ERFLHDGGLD-GSHRYFITAANARNKLVVIDTK----EGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVA  280 (432)
T ss_dssp             CSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             cCccccceEC-CCCCEEEEeccccceEEEeecc----cceEEEEeccCccccccCcccceecCCCCceecccccCCceEE
Confidence            5678899998 7777666665 45688899986    544444332     2334444555555555555443 377899


Q ss_pred             EEeCCCCCCccccccCcccccccceeecCCcCccccc-CCCCceEEEE-----ccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATY-----KGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      +|+...........        .+......+++..+. .........+     ..+......       ...||++.+++
T Consensus       281 ~~~~~~~~~~~~~~--------~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~s-------v~vpDg~~la~  345 (432)
T d1qksa2         281 LIGTDPEGHPDNAW--------KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS-------VAVFDIKAMTG  345 (432)
T ss_dssp             EEECCTTTCTTTBT--------SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC-------EEEEEGGGCCC
T ss_pred             eccccccccccccc--------EEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeE-------EEEEechhhcc
Confidence            99876654332210        000111111111110 0000111111     111110000       11258999999


Q ss_pred             EecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEe-----CCCcEEEecCCCCCC
Q 010883          423 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS-----WDGDVVRWEFPGNGE  481 (498)
Q Consensus       423 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~-----~Dg~i~iw~~~~~~~  481 (498)
                      ++.|+.+++||+.++..   +..|...|.+++|+|||++++.+.     .+|.|.|||..+.++
T Consensus       346 ~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         346 DGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             SSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cccCCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            99999999999866543   335777899999999999776554     468899999888754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1e-23  Score=191.00  Aligned_cols=229  Identities=17%  Similarity=0.160  Sum_probs=171.5

Q ss_pred             ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883          171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV  250 (498)
Q Consensus       171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~  250 (498)
                      ...+|..+|++++|+|    |++|+.||+|++||+.++..                     +|...|.++++++++ .++
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~---------------------~h~~~V~~~~~~~~~-~~~   61 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ---------------------DHSNLIVSLDNSKAQ-EYS   61 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC---------------------CCCSCEEEEECCSTT-CCE
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC---------------------CCCCCEEEEEecCCC-eEE
Confidence            4578999999999998    99999999999999875421                     467789999999765 589


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883          251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID  330 (498)
Q Consensus       251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  330 (498)
                      +++.|++|++|++...       .....+.++++. +++..+++ +.++.+.+|+..    ....+..+..+ ..+  .+
T Consensus        62 s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~-~~~--~~  125 (287)
T d1pgua2          62 SISWDDTLKVNGITKH-------EFGSQPKVASAN-NDGFTAVL-TNDDDLLILQSF----TGDIIKSVRLN-SPG--SA  125 (287)
T ss_dssp             EEETTTEEEETTEEEE-------ECSSCEEEEEEC-SSSEEEEE-ETTSEEEEEETT----TCCEEEEEECS-SCE--EE
T ss_pred             EEeecccccccccccc-------ccccceeeeeec-cCCceEEE-eecccceeeecc----ceeeeeecccc-cee--ee
Confidence            9999999999987542       234456778886 55555554 556678888876    66666665533 333  45


Q ss_pred             EcCCCCEEEEEeCCC-cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEE
Q 010883          331 SRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCH  408 (498)
Q Consensus       331 ~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  408 (498)
                      +++++..+++++.++ .+++|++....                                  ....+.. +..  .+    
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~----------------------------------~~~~~~~~~~~--~v----  165 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLE----------------------------------VSFDLKTPLRA--KP----  165 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEE----------------------------------EEEECSSCCSS--CE----
T ss_pred             eeccCcceeeeccccceeeeeeccccc----------------------------------eeeeeeeccCC--ce----
Confidence            566778888888775 69999987521                                  1111111 111  11    


Q ss_pred             eccccCCCCcEEEEEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCC----------CCeEEEEeCCCcEEEecCC
Q 010883          409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPS----------QPMLVSSSWDGDVVRWEFP  477 (498)
Q Consensus       409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~----------~~~l~s~~~Dg~i~iw~~~  477 (498)
                      .+++|+|++.+|++|+.||.|++||+.+++.+.. +.+|..+|.+++|+|.          +.+|++|+.|+.|++|++.
T Consensus       166 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             eEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            2335778999999999999999999999887654 6789999999999875          4589999999999999997


Q ss_pred             CCCC
Q 010883          478 GNGE  481 (498)
Q Consensus       478 ~~~~  481 (498)
                      ...+
T Consensus       246 ~~~~  249 (287)
T d1pgua2         246 RPMK  249 (287)
T ss_dssp             CTTC
T ss_pred             CCCe
Confidence            6543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=8.3e-24  Score=202.95  Aligned_cols=302  Identities=14%  Similarity=0.086  Sum_probs=199.8

Q ss_pred             CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEeCCCCCeEEEE-ECCC
Q 010883          122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSP  198 (498)
Q Consensus       122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~  198 (498)
                      +....+..| ..+..++|||||++|++++.|++|++||+.+++..  .......+|...+.+++|+|||++|+++ ..++
T Consensus        53 ~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~  131 (426)
T d1hzua2          53 KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP  131 (426)
T ss_dssp             SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             cEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCC
Confidence            333455555 45899999999999999999999999999887533  3333445667778889999999987655 4789


Q ss_pred             eEEEEECCCCceeccccccccc--------cC----cccccc---------------------------CCCCceecEEE
Q 010883          199 IVHIVDVGSGTMESLANVTEIH--------DG----LDFSAA---------------------------DDGGYSFGIFS  239 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~--------~~----~~~~~~---------------------------~~~~h~~~i~~  239 (498)
                      .+.+||..++............        .+    +.....                           ...++...+..
T Consensus       132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  211 (426)
T d1hzua2         132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD  211 (426)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEE
T ss_pred             eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEe
Confidence            9999999987654332211100        00    000000                           00123446778


Q ss_pred             EEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEecc--CCCeeEEEEeCCCCCEE--EEeeCCCeEEEEcCcccc---C
Q 010883          240 LKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLI--YSGSDDNLCKVWDRRCLN---V  311 (498)
Q Consensus       240 ~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l--~s~s~dg~i~vwd~~~~~---~  311 (498)
                      +.|+|++++++++.. +..+.+++..+++.+......  ........+..+....+  ++.+.|+.+.+|+.....   .
T Consensus       212 ~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~  291 (426)
T d1hzua2         212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY  291 (426)
T ss_dssp             EEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT
T ss_pred             eeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccc
Confidence            999999998877764 567899999999987766532  22333444432333222  344568889888865321   1


Q ss_pred             CCceeEEeccccccEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883          312 KGKPAGVLMGHLEGITFIDSRGDGRYLIS-------NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL  384 (498)
Q Consensus       312 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (498)
                      ..+....+.+|...+..++|+||+++|++       ++.|++|+|||+.+.........                     
T Consensus       292 ~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~---------------------  350 (426)
T d1hzua2         292 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP---------------------  350 (426)
T ss_dssp             BTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC---------------------
T ss_pred             cceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec---------------------
Confidence            34677888999999999999999999995       45678999999988653321100                     


Q ss_pred             cCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE-----ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCC
Q 010883          385 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-----SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ  459 (498)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~  459 (498)
                             +.....+..   .....++++|||||++++..     +.+|.|+|||..+++....+.++.      .++|+|
T Consensus       351 -------~~~~~~~~~---~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~G  414 (426)
T d1hzua2         351 -------IAEWADLGE---GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTG  414 (426)
T ss_dssp             -------HHHHHCCCS---SCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEE
T ss_pred             -------cchhcccCC---CCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCc
Confidence                   000000000   00112455788899977543     357889999999999999988764      345776


Q ss_pred             Ce
Q 010883          460 PM  461 (498)
Q Consensus       460 ~~  461 (498)
                      ++
T Consensus       415 k~  416 (426)
T d1hzua2         415 KF  416 (426)
T ss_dssp             EE
T ss_pred             eE
Confidence            65

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=7.9e-23  Score=189.14  Aligned_cols=276  Identities=11%  Similarity=0.068  Sum_probs=189.9

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE-EEECCCeEEEEECCCCceeccccccccccC
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDG  222 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (498)
                      +||++++.|++|.|||+.+++.+..+ ....+...+.+++|+|||++++ +++.++.|.+||+.+++...........  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~--   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc--
Confidence            58999999999999999999766654 3333444678999999999875 5567899999999998876554432211  


Q ss_pred             ccccccCCCCceecEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883          223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                               .+...+..++|+|++++++++.            .+..+.+||..+++....+. +...+..++|+ +++.
T Consensus        79 ---------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s-~dg~  147 (337)
T d1pbyb_          79 ---------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWA-RDGS  147 (337)
T ss_dssp             ---------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEEC-TTSS
T ss_pred             ---------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEc-CCCC
Confidence                     1223456799999999998876            35789999999999887775 45668899998 7888


Q ss_pred             EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE------------------------eCCCc
Q 010883          291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN------------------------GKDQA  346 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~------------------------~~dg~  346 (498)
                      ++++++.  .+.+||..    ..+....+..+... ....+.|++..+...                        ..++.
T Consensus       148 ~l~~~~~--~~~~~d~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T d1pbyb_         148 KLYGLGR--DLHVMDPE----AGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             CEEEESS--SEEEEETT----TTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             EEEEEcC--Ccceeeee----cCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc
Confidence            8888765  46789986    55555554432211 112233333222211                        11223


Q ss_pred             EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883          347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD  426 (498)
Q Consensus       347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  426 (498)
                      +.+||+....                                 .....+..+..      ..+...+++++.+++.+  +
T Consensus       221 ~~~~~~~~~~---------------------------------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~  259 (337)
T d1pbyb_         221 LLTMDLETGE---------------------------------MAMREVRIMDV------FYFSTAVNPAKTRAFGA--Y  259 (337)
T ss_dssp             EEEEETTTCC---------------------------------EEEEEEEECSS------CEEEEEECTTSSEEEEE--E
T ss_pred             EEEEEcCCCc---------------------------------EEEEEecCCCc------ceEEEEecccceEEEEc--c
Confidence            4444443311                                 01111111111      11223456788888766  5


Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      +.|++||+.+++.+..+. +...+.+++|+|||++|++++.||.|++||..+.+..
T Consensus       260 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         260 NVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             ccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            889999999999998886 5677899999999999999999999999999887644

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=1.8e-22  Score=187.37  Aligned_cols=308  Identities=12%  Similarity=0.089  Sum_probs=193.1

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EECCCeEEEEECCCCceecccc
Q 010883          137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLAN  215 (498)
Q Consensus       137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s~d~~i~iwd~~~~~~~~~~~  215 (498)
                      ++|++++++|++++.+++|.|||+.+++.+.....  .+...+.+++|+|||+++++ +..++.|.+||+.+++......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            47899999999999999999999999966655432  23335789999999998755 4578999999999988765443


Q ss_pred             ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEEEec--cCCCeeE
Q 010883          216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILA--HTSDVNT  281 (498)
Q Consensus       216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------------~dg~i~vwd~~~~~~~~~~~~--~~~~v~~  281 (498)
                      .....          ..+...+..++|+|||+++++++            .++.+.+|+..+++....+..  ....+..
T Consensus        80 ~~~~~----------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  149 (346)
T d1jmxb_          80 LSSVP----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL  149 (346)
T ss_dssp             SCCST----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC
T ss_pred             ccccc----------cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEE
Confidence            32211          12233466799999999988765            467789999988775544332  2345566


Q ss_pred             EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccc
Q 010883          282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNAS  360 (498)
Q Consensus       282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~  360 (498)
                      +.++ +++.+++++   +.+.+|++.    ....+..+..+ .....+.++|++..++.. ..++.+.+++.........
T Consensus       150 ~~~~-~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (346)
T d1jmxb_         150 MRAA-DDGSLYVAG---PDIYKMDVK----TGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  220 (346)
T ss_dssp             EEEC-TTSCEEEES---SSEEEECTT----TCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             EEec-CCCEEEEeC---CcceEEEcc----CCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCc
Confidence            6664 666666543   468899987    66666666543 333455566766554332 3334444444322110000


Q ss_pred             cccCcccccccceeecCCcCcccccCCCCce-EEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883          361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ  439 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  439 (498)
                      ...........+..         +....+.. ......+..  .    .+...+++++.+++.... +.|++||+.+++.
T Consensus       221 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~  284 (346)
T d1jmxb_         221 QDPATADLLYGYLS---------VDLKTGKTHTQEFADLTE--L----YFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKL  284 (346)
T ss_dssp             ---CCCEEEEEEEE---------EETTTCCEEEEEEEECSS--C----EEEEEECSSCTTEEEEEE-SEEEEEETTTTEE
T ss_pred             eeEeeccCCceEEE---------EECCCCceEEEEeecccc--e----eEEEEEeCCCCEEEEecC-CeEEEEECCCCcE
Confidence            00000000000000         00000111 111111111  1    122244556777776654 5799999999999


Q ss_pred             EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       440 ~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      +..+. +...+.+++|+|||++|++++.||.|++||+.+.+..
T Consensus       285 ~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            88886 4567999999999999999999999999999876543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=5.9e-20  Score=166.75  Aligned_cols=244  Identities=15%  Similarity=0.133  Sum_probs=179.5

Q ss_pred             CceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCc
Q 010883          132 SRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT  209 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~  209 (498)
                      .....++|+|||++|+ +++.++.|++||+.+++.+.....   +. .+..++|++++..++++ ..++.+.+|+..+++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec---cc-cccccccccccccccccccccceeeecccccce
Confidence            4578899999999875 566789999999999976665432   22 47889999999876655 457799999999887


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES  288 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  288 (498)
                      ........                 ..+.++.|+|+++.++. +..++.+.+|+..+.+....+.. ...+..+.++ ++
T Consensus       108 ~~~~~~~~-----------------~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~  168 (301)
T d1l0qa2         108 VAGTVKTG-----------------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVT-PD  168 (301)
T ss_dssp             EEEEEECS-----------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEEC-TT
T ss_pred             eeeecccc-----------------ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEee-cc
Confidence            65444321                 25788999999997755 45678899999999988877754 4567889998 56


Q ss_pred             CCEEEEeeC-CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCCCccccccC
Q 010883          289 GHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLG  364 (498)
Q Consensus       289 ~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~  364 (498)
                      +..+++++. ++.+.+|+..    ......... ....+..+++++++..++.+..   ++.|++||+.+.         
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---------  234 (301)
T d1l0qa2         169 GTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---------  234 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------
T ss_pred             ccceeeeccccccccccccc----ceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCC---------
Confidence            666665554 5677788775    444444444 3456778999999998876543   467999999873         


Q ss_pred             cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE-EEecCCeEEEEECCCCcEEEEe
Q 010883          365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVYDLVSGEQVAAL  443 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~  443 (498)
                                               +.+..+..+..       ...++|+|||++|+ +++.++.|++||+.+++.+.++
T Consensus       235 -------------------------~~~~~~~~~~~-------~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         235 -------------------------KITARIPVGPD-------PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             -------------------------EEEEEEECCSS-------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -------------------------eEEEEEcCCCC-------EEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence                                     33444443322       12346788999874 6677999999999999999888


Q ss_pred             c
Q 010883          444 K  444 (498)
Q Consensus       444 ~  444 (498)
                      .
T Consensus       283 ~  283 (301)
T d1l0qa2         283 A  283 (301)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=5.2e-21  Score=182.95  Aligned_cols=310  Identities=12%  Similarity=-0.041  Sum_probs=199.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL  223 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (498)
                      -++++.+.+|+|.|||..+++.+..+..  ++  .+..++|||||++|++++.|+.|++||+.+++......+...    
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~--g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~----  104 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDT--GY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG----  104 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC--SS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC----
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeC--CC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC----
Confidence            3458888999999999999987776542  22  589999999999999999999999999988765433332211    


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEecc-----------CCCeeEEEEeCCCCCE
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAH-----------TSDVNTVCFGDESGHL  291 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~  291 (498)
                             .+|.+.+.+..|+|||++| ++++.++.|.+||..+++++..+..|           ......+.+++....+
T Consensus       105 -------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         105 -------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             -------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             -------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence                   1345567778899999986 67788999999999999988776543           3456678888544445


Q ss_pred             EEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCCCccccccCccccc
Q 010883          292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYE  369 (498)
Q Consensus       292 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~  369 (498)
                      +++...++.|.+||..    ..+...... .+...+..++|+|+|+++++++.+ +.+.++|..+...............
T Consensus       178 ~vs~~~~~~i~~~d~~----~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~  253 (432)
T d1qksa2         178 IVNVKETGKILLVDYT----DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH  253 (432)
T ss_dssp             EEEETTTTEEEEEETT----CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred             EEEEccCCeEEEEEcc----CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccc
Confidence            6677788999999986    444333222 345678899999999988777654 5788999887544332211111000


Q ss_pred             cc-ceeecCCcCccccc--CCCCceEEEEccCceeEE-EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc
Q 010883          370 WD-YRWMDYPPQARDLK--HPCDQSVATYKGHSVLRT-LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY  445 (498)
Q Consensus       370 ~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  445 (498)
                      .. ......+.......  ...+..+..+........ ...-.....++|++..+++++.+...++|+..+.      ..
T Consensus       254 ~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~------~~  327 (432)
T d1qksa2         254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL------NP  327 (432)
T ss_dssp             CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT------CS
T ss_pred             cCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC------CC
Confidence            00 00000000000000  000111111111100000 0000112236778888888888888899976543      33


Q ss_pred             CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          446 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       446 h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      |.....++++ ||++.|++++.|+.+++|++...
T Consensus       328 ~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~  360 (432)
T d1qksa2         328 EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEW  360 (432)
T ss_dssp             SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHH
T ss_pred             CCCeeeEEEE-EechhhcccccCCceEecccccc
Confidence            5444555665 89999999999999999997543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=4e-19  Score=166.73  Aligned_cols=315  Identities=10%  Similarity=-0.032  Sum_probs=200.5

Q ss_pred             ccCCCCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-----
Q 010883          127 VDQTTSRAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----  196 (498)
Q Consensus       127 l~~h~~~v~~~~~s~dg~~la~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-----  196 (498)
                      ...+..++.+++++|||+.+++..     ..+.|.+||..+++.+..+.   .+  ....++|+|||++|++++.     
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~---~~--~~~~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN---GG--FLPNPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe---CC--CCccEEEcCCCCEEEEEeecCCcc
Confidence            346788999999999999887642     34679999999997776532   22  2336899999999998753     


Q ss_pred             -----CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeee
Q 010883          197 -----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLS  269 (498)
Q Consensus       197 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~  269 (498)
                           ++.|.+||..+++..............         -......+.|+++++.++...  .++.+.+|+....+..
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  161 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFD---------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD  161 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeE---------eccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE
Confidence                 578999999998876554432211100         001234588999999776654  4567899998887654


Q ss_pred             EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------cccEEEEEEcCCCCEEEEEeC
Q 010883          270 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK  343 (498)
Q Consensus       270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~  343 (498)
                      ..    .....++.+++.....+++.+.|+.+.+|+..    ..........+      ......+.+.+++. ++..+.
T Consensus       162 ~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  232 (373)
T d2madh_         162 QL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA----GGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVY  232 (373)
T ss_pred             EE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcC----CceeeEEEeeeccccCccceeeeEEECCCce-EEEecC
Confidence            33    34467888986555677889999999999987    44443333221      12234455666654 455667


Q ss_pred             CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE
Q 010883          344 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG  423 (498)
Q Consensus       344 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  423 (498)
                      ++.+.+|+................  .......+.+        .......+....  ..   .   ..+..++..++..
T Consensus       233 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~d~--~~---~---~~~~~~~~~~~~~  294 (373)
T d2madh_         233 SGKILQADISAAGATNKAPIDALS--GGRKADTWRP--------GGWQQVAYLKSS--DG---I---YLLTSEQSAWKLH  294 (373)
T ss_pred             CceEEEEEcCCCeEEEEEeecccc--CcEEeeeecc--------CcceeeEEecCC--Ce---E---EEecCCCceEEee
Confidence            889999998874321111000000  0000000000        000000000000  00   0   0112245556667


Q ss_pred             ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCCCCCCC
Q 010883          424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGNGEAA  483 (498)
Q Consensus       424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~~~~~~  483 (498)
                      ..++.+.+||+.+++.+..+. +...+.+++|+|||+  ++++++.|+.|++||+.+++...
T Consensus       295 ~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         295 AAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             cCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            778899999999999998886 667789999999998  45788999999999999887543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.5e-19  Score=166.73  Aligned_cols=288  Identities=12%  Similarity=0.138  Sum_probs=181.6

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCceeccccccccccCc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGL  223 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (498)
                      .+++++.|++|+||+++....+... ....+.+.|..++|+|||++|++++. |+.|++|++..............    
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~-~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~----   80 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA----   80 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE----
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEE-EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc----
Confidence            4577779999999999764333222 22234557999999999999966654 89999999976543222111110    


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEE--EeccCCCeeEEEEeCCCCCEEEEee-CCC
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGS-DDN  299 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~s-~dg  299 (498)
                               +...+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++ ++++++++++ .+.
T Consensus        81 ---------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          81 ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS-PDNRTLWVPALKQD  150 (333)
T ss_dssp             ---------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC-TTSSEEEEEEGGGT
T ss_pred             ---------cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee-ecceeeeccccccc
Confidence                     1124667999999999998875 67899998877655433  33567788899998 6777766665 456


Q ss_pred             eEEEEcCccccCCCce--eEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeec
Q 010883          300 LCKVWDRRCLNVKGKP--AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD  376 (498)
Q Consensus       300 ~i~vwd~~~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  376 (498)
                      .|.+|+..........  .............++|++++..++... ..+...+|+...........              
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------  216 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV--------------  216 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE--------------
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee--------------
Confidence            7999997622100000  011122345568899999998877654 45678888875432211100              


Q ss_pred             CCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEE---eccCCCCee
Q 010883          377 YPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAA---LKYHTSPVR  451 (498)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~---~~~h~~~v~  451 (498)
                                   ..+.... ........    ..+.+++++++++... .++.+.+|++........   ...+...+.
T Consensus       217 -------------~~~~~~~~~~~~~~~~----~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  279 (333)
T d1ri6a_         217 -------------QTLDMMPENFSDTRWA----ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPR  279 (333)
T ss_dssp             -------------EEEECSCTTCCSCCCE----EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCC
T ss_pred             -------------eeeeeeecCCCccccc----eeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCee
Confidence                         0000000 00000111    1234667888776654 578899999876543222   223456688


Q ss_pred             eeEEcCCCCeEEEEe-CCCcEEEecCCC
Q 010883          452 DCSWHPSQPMLVSSS-WDGDVVRWEFPG  478 (498)
Q Consensus       452 ~l~~sp~~~~l~s~~-~Dg~i~iw~~~~  478 (498)
                      +++|+|||++|++++ .++.|.+|+++.
T Consensus       280 ~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         280 GFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             CEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            999999999877665 568999997754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.1e-19  Score=167.75  Aligned_cols=250  Identities=14%  Similarity=0.062  Sum_probs=174.9

Q ss_pred             CCCCceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCC--CceeEEEEEeCCCCCeEEEEE----------
Q 010883          129 QTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYAS----------  195 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~s----------  195 (498)
                      .+...+.+++|+|||++|+ +++.++.|.+||+.+++.+........  +...+..++|+|++++++++.          
T Consensus        31 ~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T d1pbyb_          31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence            3455678899999999874 566799999999999977665443221  123455789999999998876          


Q ss_pred             --CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883          196 --MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL  273 (498)
Q Consensus       196 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~  273 (498)
                        .+..+.+||..+++........                 ..+..++|+|||+++++++.+  +.+||..+++....+.
T Consensus       111 ~~~~~~~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~  171 (337)
T d1pbyb_         111 EVQPTRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEEC
T ss_pred             cccccceeeccccCCeEEEecccc-----------------CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEee
Confidence              3567889999888765544322                 156778999999999998644  7889999998877765


Q ss_pred             ccCCCeeEEEEeC-----------------------CCCCEEEEeeCCCeEEEEcCccccCCCcee-EEeccccccEEEE
Q 010883          274 AHTSDVNTVCFGD-----------------------ESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFI  329 (498)
Q Consensus       274 ~~~~~v~~~~~~~-----------------------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~l  329 (498)
                      .+... ....+.+                       .....+..+..++.+.+||..    .+... ..+..+...+..+
T Consensus       172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  246 (337)
T d1pbyb_         172 IQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFST  246 (337)
T ss_dssp             STTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEE
T ss_pred             cCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC----CCcEEEEEecCCCcceEEE
Confidence            43221 1111110                       011111122334568888876    44433 3445567778889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883          330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF  409 (498)
Q Consensus       330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (498)
                      .++|++.+++.+  ++.|++||+.+.                                  +.+..+.....       .+
T Consensus       247 ~~~~~~~~~~~~--~~~i~v~d~~~~----------------------------------~~~~~~~~~~~-------~~  283 (337)
T d1pbyb_         247 AVNPAKTRAFGA--YNVLESFDLEKN----------------------------------ASIKRVPLPHS-------YY  283 (337)
T ss_dssp             EECTTSSEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC-------CC
T ss_pred             EecccceEEEEc--cccEEEEECCCC----------------------------------cEEEEEcCCCC-------EE
Confidence            999999988766  478999999873                                  33443332221       13


Q ss_pred             ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc
Q 010883          410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY  445 (498)
Q Consensus       410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  445 (498)
                      +++|+|||++|++++.++.|++||+.+++.+.+++.
T Consensus       284 ~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            447888999999999999999999999999988863

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1e-19  Score=169.55  Aligned_cols=294  Identities=12%  Similarity=0.010  Sum_probs=186.0

Q ss_pred             eEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCC
Q 010883          134 AYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSP  198 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~  198 (498)
                      +.-.+.+|||+.+++..     .++.|.+||..+++.+......     .+..++|+|||++|++++          .++
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-----~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----FLPNPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----SSCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-----CCCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            34446789999987754     3567999999999776654322     233689999999888754          478


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHT  276 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~  276 (498)
                      .|++||..+++.............         ........++|+|+++++++++  .+..+.+|+..+++.+..+..+.
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRF---------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  149 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCC---------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             EEEEEECCCCCEEEEEecCCccee---------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC
Confidence            999999999887655443221110         0111234578999999888775  45789999999999887775433


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE------eccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLW  350 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw  350 (498)
                      ...   .+ +......++.+.||...++....    ......      ...+...+....+.+++..++.++.++.+++|
T Consensus       150 ~~~---~~-~~~~~~~~~~~~dg~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  221 (355)
T d2bbkh_         150 CYH---IF-PTAPDTFFMHCRDGSLAKVAFGT----EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI  221 (355)
T ss_dssp             EEE---EE-EEETTEEEEEETTSCEEEEECCS----SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEE
T ss_pred             cce---Ee-ecCCcceEEEcCCCCEEEEEecC----CCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEE
Confidence            211   11 12223333444444444443321    111100      01223334556778888899999999999999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce----eEEEEEEEeccccCCCCcEEEEEecC
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYSTGQKYIYTGSHD  426 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~g~~d  426 (498)
                      ++.........                                ....+..    ...........++++++..++....+
T Consensus       222 ~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~  269 (355)
T d2bbkh_         222 DLSSGDAKFLP--------------------------------AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ  269 (355)
T ss_dssp             ECTTSSCEECC--------------------------------CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             ecCCCcEEEEe--------------------------------ccCCcccceEeeeeeccceEEEEEeCCCCeEEEEecc
Confidence            99874321110                                0000000    00000000112466788888776544


Q ss_pred             ----------CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCCCCCC
Q 010883          427 ----------SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 ----------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                                ..|.+||..+++.+..+. +...+.+++|+|||+  ++++++.|+.|++||+.+++..
T Consensus       270 ~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         270 RDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             CCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence                      369999999999988886 345689999999998  4567778999999999887643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.1e-17  Score=152.05  Aligned_cols=260  Identities=15%  Similarity=0.121  Sum_probs=167.5

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEEC
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDV  205 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~  205 (498)
                      ..|.+.+..++|||||++|++++ .|+.|++|++..+...........+...+..++|+|||++|++++. ++.|.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            36788999999999999986655 5899999999765333222222233345778999999999999885 678999998


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEE------eccCCC
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRI------LAHTSD  278 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~------~~~~~~  278 (498)
                      .............              +...+.++.++|+++++++++. +..|.+|+..........      ......
T Consensus       113 ~~~~~~~~~~~~~--------------~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~  178 (333)
T d1ri6a_         113 EDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG  178 (333)
T ss_dssp             ETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred             ccccceecccccC--------------CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCC
Confidence            7765443332221              2235778899999998888764 467999998765433221      134456


Q ss_pred             eeEEEEeCCCCCEEE-EeeCCCeEEEEcCccccCCCceeEEec------cccccEEEEEEcCCCCEEEEE-eCCCcEEEE
Q 010883          279 VNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYLISN-GKDQAIKLW  350 (498)
Q Consensus       279 v~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iw  350 (498)
                      ...++|+ +++.+++ +....+...+|+...............      ........+++++++++++.. ..++.+.+|
T Consensus       179 p~~i~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~  257 (333)
T d1ri6a_         179 PRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF  257 (333)
T ss_dssp             EEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ccEEEEe-ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEE
Confidence            6889997 5555554 445667788887653221222222221      123456778899999877655 456789999


Q ss_pred             eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeE
Q 010883          351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCV  429 (498)
Q Consensus       351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i  429 (498)
                      ++.......                               .+.......      ......+|||||++|++++. ++.|
T Consensus       258 ~~~~~~~~~-------------------------------~~~~~~~~~------~~p~~~a~spDGk~l~va~~~~~~v  300 (333)
T d1ri6a_         258 SVSEDGSVL-------------------------------SKEGFQPTE------TQPRGFNVDHSGKYLIAAGQKSHHI  300 (333)
T ss_dssp             EECTTSCCE-------------------------------EEEEEEECS------SSCCCEEECTTSSEEEEECTTTCEE
T ss_pred             EEcCCCCEE-------------------------------EEEEEeCCC------CCeeEEEEeCCCCEEEEEECCCCeE
Confidence            987632111                               001000000      00123468889999887765 5889


Q ss_pred             EEE--ECCCCcE
Q 010883          430 YVY--DLVSGEQ  439 (498)
Q Consensus       430 ~iw--d~~~~~~  439 (498)
                      .+|  |..+|++
T Consensus       301 ~v~~id~~tG~l  312 (333)
T d1ri6a_         301 SVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCcE
Confidence            998  4556654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=6.4e-17  Score=149.38  Aligned_cols=256  Identities=11%  Similarity=0.067  Sum_probs=171.0

Q ss_pred             CCCCceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCCC---ceeEEEEEeCCCCCeEEEEE---------
Q 010883          129 QTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQRHLVYAS---------  195 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~s---------  195 (498)
                      .|...+.+++|+|||++++ ++..++.|.+||+.+++.+.........   ...+..++|+|||+++++++         
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            3456678999999999875 5557899999999999776654433222   22456789999999988765         


Q ss_pred             ---CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883          196 ---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI  272 (498)
Q Consensus       196 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  272 (498)
                         .++.+.+|+..+++..........              ...+..+.+++++..+++   ++.+.+|++.+++.+..+
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  179 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPM--------------PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVAL  179 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEEC--------------CSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEE
T ss_pred             eccCcceEEEEecccceeeeEEEeeec--------------cCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEE
Confidence               367788888877665433222111              113555677778875554   245899999998887777


Q ss_pred             eccCCCeeEEEEeC-------------------------CCCCEEEEeeCCCeEEEEcCccccCCCce-eEEeccccccE
Q 010883          273 LAHTSDVNTVCFGD-------------------------ESGHLIYSGSDDNLCKVWDRRCLNVKGKP-AGVLMGHLEGI  326 (498)
Q Consensus       273 ~~~~~~v~~~~~~~-------------------------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~v  326 (498)
                      ..+. ....+.++|                         .....++++..++.+.+||+.    .+.. ......+...+
T Consensus       180 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  254 (346)
T d1jmxb_         180 PLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK----TGKTHTQEFADLTELY  254 (346)
T ss_dssp             CSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT----TCCEEEEEEEECSSCE
T ss_pred             ecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC----CCceEEEEeeccccee
Confidence            5432 222333331                         122223344445567777775    3333 33455677788


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883          327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR  406 (498)
Q Consensus       327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (498)
                      ..+.+++++.+++.... +.|.+||+.+.                                  +.+..+.....      
T Consensus       255 ~~~~~~~~~~~~~~~~~-~~v~v~d~~~~----------------------------------~~~~~~~~~~~------  293 (346)
T d1jmxb_         255 FTGLRSPKDPNQIYGVL-NRLAKYDLKQR----------------------------------KLIKAANLDHT------  293 (346)
T ss_dssp             EEEEECSSCTTEEEEEE-SEEEEEETTTT----------------------------------EEEEEEECSSC------
T ss_pred             EEEEEeCCCCEEEEecC-CeEEEEECCCC----------------------------------cEEEEEcCCCC------
Confidence            89999998888876654 57999999873                                  33443332211      


Q ss_pred             EEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCC
Q 010883          407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS  448 (498)
Q Consensus       407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  448 (498)
                       .++++|||||++|++++.|+.|++||+.+++.+.+++.+.+
T Consensus       294 -~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         294 -YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             -CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             -EEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence             23347888999999999999999999999999999885443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=7.8e-16  Score=143.89  Aligned_cols=258  Identities=10%  Similarity=-0.020  Sum_probs=168.2

Q ss_pred             EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeecCCCce----eEEEEEeCCCCCeEEEEEC--CCe
Q 010883          136 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYASM--SPI  199 (498)
Q Consensus       136 ~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~s~--d~~  199 (498)
                      .++|||||++|++++          .++.|.+||..+++.............    ....+.|+|+++.++....  ++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            689999999999875          357899999999876655433222111    1245788999987766543  567


Q ss_pred             EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccC--
Q 010883          200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHT--  276 (498)
Q Consensus       200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~--  276 (498)
                      +.+|+....+......                    ...++.++|+|+.+ ++.+.|+.+.+|+...++.......+.  
T Consensus       150 ~~~~~~~~~~~~~~~~--------------------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~  209 (373)
T d2madh_         150 VGLVVQGGSSDDQLLS--------------------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT  209 (373)
T ss_pred             eEEeeccCCeEEEEec--------------------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc
Confidence            8889887765432222                    46688999998754 678889999999999888766554322  


Q ss_pred             ----CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc----------ccEEEEEEcCCCCEE----
Q 010883          277 ----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----------EGITFIDSRGDGRYL----  338 (498)
Q Consensus       277 ----~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----------~~v~~l~~~~~~~~l----  338 (498)
                          .....+.+. . +..++..+.++.+.+|+.....  .........+.          .....+++++++..+    
T Consensus       210 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  285 (373)
T d2madh_         210 AAQNLLTQPAQAN-K-SGRIVWPVYSGKILQADISAAG--ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT  285 (373)
T ss_pred             cCccceeeeEEEC-C-CceEEEecCCceEEEEEcCCCe--EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec
Confidence                122333443 3 4455667788999999876221  01111111111          223344555555443    


Q ss_pred             ------EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          339 ------ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       339 ------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                            ++...++.+.+||..+.                                  +.+..+.....       ...++
T Consensus       286 ~~~~~~~~~~~~~~v~~~d~~t~----------------------------------~~~~~~~~~~~-------~~~~a  324 (373)
T d2madh_         286 SEQSAWKLHAAAKEVTSVTGLVG----------------------------------QTSSQISLGHD-------VDAIS  324 (373)
T ss_pred             CCCceEEeecCCCeEEEEECCCC----------------------------------cEEEEecCCCC-------eeEEE
Confidence                  34455667888887763                                  33333332221       12347


Q ss_pred             cCCCCcE--EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883          413 YSTGQKY--IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       413 ~s~~~~~--l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                      |||||+.  +++++.|+.|++||+.+++.+..+..+....+.+++.++
T Consensus       325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            7889984  467889999999999999999999988777888877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=4e-16  Score=144.80  Aligned_cols=266  Identities=13%  Similarity=0.058  Sum_probs=169.9

Q ss_pred             EEEEEcCCCCEEEEE----------ECCCeEEEEECCCCeEEEEEeecCCCc----eeEEEEEeCCCCCeEEEEEC--CC
Q 010883          135 YVSQFSADGSLFVAG----------FQASQIRIYDVERGWKIQKDILAKSLR----WTVTDTSLSPDQRHLVYASM--SP  198 (498)
Q Consensus       135 ~~~~~s~dg~~la~~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~s~--d~  198 (498)
                      ..++|||||++|++.          ..|+.|++||+.+++..........+.    .....++|+|+++++++++.  +.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            368999999988764          347899999999997776654433322    12356789999999888754  56


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCC
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTS  277 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~  277 (498)
                      .+.+|+..+++.............         ........+.+++|++.++... .++.+.+++......     .+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~  195 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHI---------FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEF  195 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEE---------EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSC
T ss_pred             eeeeeecCCCcEeeEEecCCcceE---------eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecc
Confidence            899999999876554433211100         0011334566777777665543 334455555544322     3444


Q ss_pred             CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc----------cccEEEEEEcCCCCEEEEEeCC---
Q 010883          278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----------LEGITFIDSRGDGRYLISNGKD---  344 (498)
Q Consensus       278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~v~~l~~~~~~~~l~s~~~d---  344 (498)
                      .+....+. .++..++.++.++.+++|++.....  ..+.....+          ......+++++++..++....+   
T Consensus       196 ~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         196 LINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  272 (355)
T ss_dssp             BCSCCEEE-TTTTEEEEEBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             eeeecccc-CCCCeEEEecCCCeEEEEecCCCcE--EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence            55666776 5667788889999999999862211  111111111          1223457889999888765543   


Q ss_pred             -------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883          345 -------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ  417 (498)
Q Consensus       345 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  417 (498)
                             ..|.+||..+.                                  +.+..+...       .....++|+|||
T Consensus       273 ~~~~~~~~~v~v~d~~t~----------------------------------~~~~~~~~~-------~~~~~~a~spDG  311 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTG----------------------------------ERLAKFEMG-------HEIDSINVSQDE  311 (355)
T ss_dssp             TCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEECCSS
T ss_pred             eeecCCCCeEEEEeCCCC----------------------------------cEEEEecCC-------CCEEEEEEcCCC
Confidence                   36889998873                                  333333221       122345788899


Q ss_pred             c--EEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883          418 K--YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       418 ~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                      +  ++++++.|+.|++||+.+++.+.++..+......+.+.++
T Consensus       312 ~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             SCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            7  4556777999999999999999999877655556655544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=5.6e-16  Score=144.73  Aligned_cols=303  Identities=7%  Similarity=-0.088  Sum_probs=184.2

Q ss_pred             CCceEEEEEcCCCCEEEE---EECCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------
Q 010883          131 TSRAYVSQFSADGSLFVA---GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------  195 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~---~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------  195 (498)
                      .++...++..++++....   ...++  .|.+||..+++.+...... .    ...++|+|||+.|++++          
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~-~----~~~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-F----LSLAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-T----TCEEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCC-C----CCcceECCCCCEEEEEcccCccccccc
Confidence            444455566888875432   23334  4777799998766654322 1    12488999999998865          


Q ss_pred             CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEec
Q 010883          196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILA  274 (498)
Q Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~  274 (498)
                      .|+.|.+||..+++.............         ........++|+|||++|+++. .++.|.+||+.+++....+..
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~---------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRF---------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSC---------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             cCCeEEEEECCCCcEeeeecCCcccee---------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence            367899999999887655443221110         0001233589999999998876 578999999999999888766


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCce--eEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI  352 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  352 (498)
                      +.....    .+.....++..+.||.+.++++.........  ......+...+....+.+++..+.+.  .+.+.++++
T Consensus       165 ~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~  238 (368)
T d1mdah_         165 ASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDI  238 (368)
T ss_dssp             SSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEEC
T ss_pred             cCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEee
Confidence            544321    2244567788888999998887622111100  01122333445566777777666544  455777776


Q ss_pred             CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC------
Q 010883          353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD------  426 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------  426 (498)
                      .................             ...    ... ...+.          ...++++++..++....+      
T Consensus       239 ~~~~~~~~~~~~~~~~~-------------~~~----~~~-~~~g~----------~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         239 PAAGATMKAAIDGNESG-------------RKA----DNF-RSAGF----------QMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CSSCCEEECCCCSSCTH-------------HHH----TTE-EECSS----------SCEEEETTTTEEEEEEEECSSCTT
T ss_pred             cCCceEEEeecccccce-------------eee----eee-cCCCc----------eeEEEcCCCCEEEEEecCCCceee
Confidence            65322111000000000             000    000 00000          112345577766655332      


Q ss_pred             ---CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCCCCCC
Q 010883          427 ---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 ---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                         ..|.+||..+++.+..+. +...+.+++|+|||+  +++++..|+.|++||..+++..
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             cCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence               359999999999988886 345789999999997  3466778999999999887643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.62  E-value=1.2e-14  Score=134.73  Aligned_cols=273  Identities=12%  Similarity=0.097  Sum_probs=176.5

Q ss_pred             EEEEECCCeEEEEECCCCeEEEEEeecC---------------------------CCceeEEEEEeCCCCCeEEEEE-CC
Q 010883          146 FVAGFQASQIRIYDVERGWKIQKDILAK---------------------------SLRWTVTDTSLSPDQRHLVYAS-MS  197 (498)
Q Consensus       146 la~~~~dg~i~vw~~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~sp~~~~l~~~s-~d  197 (498)
                      +++|+.+|.|+||++.+++.+..+....                           .|.-.+....++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            5677889999999999987776643321                           1222455566789999997765 57


Q ss_pred             CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC--EEEEEeCCC-----------------eE
Q 010883          198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDD-----------------CI  258 (498)
Q Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~--~l~~g~~dg-----------------~i  258 (498)
                      +.|.++|+.+.+......++.               ...+..++|+|+|+  +++..+.+.                 .+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~---------------g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPN---------------VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTT---------------CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCC---------------CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            899999999998766554432               12688999999998  444444332                 23


Q ss_pred             EEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC---------------------------------------
Q 010883          259 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---------------------------------------  299 (498)
Q Consensus       259 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---------------------------------------  299 (498)
                      ..+|..+.+...++... ..+..+.++ +++.++++.+.+.                                       
T Consensus       159 ~~iD~~t~~v~~qI~v~-~~p~~v~~s-pdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~  236 (441)
T d1qnia2         159 TAIDAETMDVAWQVIVD-GNLDNTDAD-YTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD  236 (441)
T ss_dssp             EEEETTTCSEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EeecCccceeeEEEecC-CCccceEEC-CCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence            55888888877776543 457889997 7788877776432                                       


Q ss_pred             --eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCCccccccCcccccccceeec
Q 010883          300 --LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD  376 (498)
Q Consensus       300 --~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  376 (498)
                        .+.+++..    ....+..+.... ....+.++|||++++ ++..+++|.+||+.+...........           
T Consensus       237 ~~v~vvd~~~----~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~-----------  300 (441)
T d1qnia2         237 SKVPVVDGRG----ESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL-----------  300 (441)
T ss_dssp             CCCCEEECSS----SCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG-----------
T ss_pred             CCcEEEEccc----CCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCc-----------
Confidence              22233222    223344444333 346789999999875 56778999999998743211100000           


Q ss_pred             CCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC----------CcEEEEe---
Q 010883          377 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS----------GEQVAAL---  443 (498)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----------~~~~~~~---  443 (498)
                                  ...+. ........ .    .+..|+++|..+.+...|..|..|++..          ...+..+   
T Consensus       301 ------------~~~~~-~~~~~glg-p----lh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~  362 (441)
T d1qnia2         301 ------------RDTIV-AEPELGLG-P----LHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ  362 (441)
T ss_dssp             ------------GGGEE-ECCBCCSC-E----EEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS
T ss_pred             ------------ceEEE-eecccccC-c----ccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc
Confidence                        00000 00000000 0    1125777898888888999999999742          1233444   


Q ss_pred             --ccCCCCeeeeEEcCCCCeEEEE---eCCC
Q 010883          444 --KYHTSPVRDCSWHPSQPMLVSS---SWDG  469 (498)
Q Consensus       444 --~~h~~~v~~l~~sp~~~~l~s~---~~Dg  469 (498)
                        .+|...+.+.+++|||++|+++   +.|.
T Consensus       363 y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         363 YQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             SCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             cCCCCCccccccccCCCCcEEEecCcccccc
Confidence              4777788889999999999999   5554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=5e-14  Score=135.88  Aligned_cols=124  Identities=14%  Similarity=0.111  Sum_probs=86.2

Q ss_pred             ccccCCCCceEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE
Q 010883          125 WPVDQTTSRAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS  195 (498)
Q Consensus       125 ~~l~~h~~~v~~~~~s~dg~~la~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s  195 (498)
                      ..+..|...|.+++|||||++||.++.         ++.+.|||+.++..    .....+...+..+.|||||+.||...
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~----~~l~~~~~~~~~~~~SPDG~~ia~~~  130 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----ITEERIPNNTQWVTWSPVGHKLAYVW  130 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----CCSSCCCTTEEEEEECSSTTCEEEEE
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc----cccccCCccccccccccCcceeeEee
Confidence            456777889999999999999998753         46789999998832    23445666799999999999999965


Q ss_pred             CCCeEEEEECCCCceeccccccccccCccccccCC----CCceecEEEEEEcCCCCEEEEEeCC
Q 010883          196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGRELVAGSSD  255 (498)
Q Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~s~~g~~l~~g~~d  255 (498)
                       ++.+.+|+..+++..........  ...+....+    ....+....+.|+|||++|+....|
T Consensus       131 -~~~l~~~~~~~g~~~~~t~~~~~--~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         131 -NNDIYVKIEPNLPSYRITWTGKE--DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             -TTEEEEESSTTSCCEECCSCCBT--TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             -cccceEEECCCCceeeeeeccCC--CcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence             67899999998876544332111  000000000    0011234567899999999987654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.8e-13  Score=127.40  Aligned_cols=252  Identities=11%  Similarity=0.031  Sum_probs=146.5

Q ss_pred             EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeecCCC----ceeEEEEEeCCCCCeEEEEE-CCCeE
Q 010883          136 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYAS-MSPIV  200 (498)
Q Consensus       136 ~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~s-~d~~i  200 (498)
                      .++|+|||+.|++.+          .|+.|.+||..+++...........    ......++|+|||++|+++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            589999999988764          3678999999998777665432211    11234689999999998876 47899


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE------ec
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI------LA  274 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~------~~  274 (498)
                      .+||+.+++............         ..+.          ....++..+.||.+.++++.........      ..
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~---------~~~~----------~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~  209 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFH---------IHPG----------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA  209 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCC---------CEEE----------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred             EEEECCCCcEeEEeeccCcce---------EccC----------CCceEEEEcCCCCEEEEEecCCceeeeeeecccccc
Confidence            999999988765543321100         0011          1223444455555555555443322211      12


Q ss_pred             cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE--Eecc----------ccccEEEEEEcCCCCEEEEEe
Q 010883          275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VLMG----------HLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~----------~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      +...+..+.+. +++..+.+.  .+.+.+++..    ......  ....          .......+++++++..++...
T Consensus       210 ~~~~~~~~~~~-~~g~~~~~~--~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         210 QNCSSQAAQAN-YPGMLVWAV--ASSILQGDIP----AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             SCBCSCCEEET-TTTEEEECB--SSCCEEEECC----SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             cccceeecccc-cCcEEEEec--CCCEEEEeec----CCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence            33344455554 455444433  3445555543    111111  1100          112233577888888776543


Q ss_pred             CC---------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883          343 KD---------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY  413 (498)
Q Consensus       343 ~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (498)
                      .+         ..|.+||..+.+                                  .+..+..       -.....++|
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~----------------------------------~~~~~~~-------~~~~~~~a~  321 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQ----------------------------------TSGPISN-------GHDSDAIIA  321 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCC----------------------------------EEECCEE-------EEEECEEEE
T ss_pred             cCCCceeecCCceEEEEECCCCc----------------------------------EeEEecC-------CCceeEEEE
Confidence            22         358889988732                                  2222221       122345578


Q ss_pred             CCCCc-E-EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEE
Q 010883          414 STGQK-Y-IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW  455 (498)
Q Consensus       414 s~~~~-~-l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  455 (498)
                      ||||+ + ++++..++.|++||..+++.+..+..... -..|++
T Consensus       322 spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         322 AQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             CCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            88997 3 45666789999999999999999875433 344443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=5.5e-12  Score=121.29  Aligned_cols=150  Identities=13%  Similarity=0.112  Sum_probs=107.8

Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--ecCCCceeEEEEEeCCCCCeEEEEEC---------CCeEEEEE
Q 010883          136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIVD  204 (498)
Q Consensus       136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~s~---------d~~i~iwd  204 (498)
                      .+.|.+|++++..  .|+.|.+||+.+++....+.  ....+...|.++.|||||++|+.++.         ++.+.|||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4679999987764  57889999999986543221  22344567999999999999998753         46789999


Q ss_pred             CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec----------
Q 010883          205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----------  274 (498)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~----------  274 (498)
                      +.+++...+..                 +...+..+.|||||+.||.. .++.+++|+..+++.......          
T Consensus        99 ~~~~~~~~l~~-----------------~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~  160 (470)
T d2bgra1          99 LNKRQLITEER-----------------IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI  160 (470)
T ss_dssp             TTTTEECCSSC-----------------CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred             CCCCccccccc-----------------CCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccc
Confidence            99987654333                 33478899999999999986 467899999998876543321          


Q ss_pred             --------cCCCeeEEEEeCCCCCEEEEeeCCCe-EEEEcC
Q 010883          275 --------HTSDVNTVCFGDESGHLIYSGSDDNL-CKVWDR  306 (498)
Q Consensus       275 --------~~~~v~~~~~~~~~~~~l~s~s~dg~-i~vwd~  306 (498)
                              ..+....+.|+ |+++.|+....|.. +..|.+
T Consensus       161 ~d~~~~~~~~~~~~~~~wS-PDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         161 TDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEE
T ss_pred             cceeeeeeecCCccccEEC-CCCCccceeEecCCcCceEEE
Confidence                    12334567787 77888887765533 444443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=9.3e-11  Score=108.39  Aligned_cols=252  Identities=9%  Similarity=0.005  Sum_probs=154.1

Q ss_pred             cCCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC--eEEEEECCC------
Q 010883          128 DQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSP------  198 (498)
Q Consensus       128 ~~h~~~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~s~d~------  198 (498)
                      ..|.-......++|||++|++.. .+++|.++|+.+.+........  ....+..++|+|+++  |++..+.+.      
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP--~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP--NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT--TCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC--CCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            44555667777899999987665 5789999999998655543322  234689999999998  444444332      


Q ss_pred             -----------eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------------
Q 010883          199 -----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------------  255 (498)
Q Consensus       199 -----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------------  255 (498)
                                 .+..+|..+.+.........                 ....+.|+|+|+++++.+.+            
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-----------------~p~~v~~spdGk~a~vt~~nse~~~~id~~t~  208 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-----------------NLDNTDADYTGKYATSTCYNSERAVDLAGTMR  208 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESS-----------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred             ccccccccccceEEeecCccceeeEEEecCC-----------------CccceEECCCCCEEEEEecCCCceEEEeccCc
Confidence                       22445655554433222211                 35668888888888777643            


Q ss_pred             -----------------------------CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE-EEeeCCCeEEEEc
Q 010883          256 -----------------------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWD  305 (498)
Q Consensus       256 -----------------------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~vwd  305 (498)
                                                   +.+.+++....+.+..+..... ...+.++ |+++++ +++..+++|.+||
T Consensus       209 ~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vS-PDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         209 NDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTS-PDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             SSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEEC-TTSCEEEEECTTSSBEEEEE
T ss_pred             ceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceEC-CCCCEEEEeCCcCCcEEEEE
Confidence                                         3344454555555566655444 5778998 677765 5678899999999


Q ss_pred             CccccC----CCceeEEecc---ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883          306 RRCLNV----KGKPAGVLMG---HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP  378 (498)
Q Consensus       306 ~~~~~~----~~~~~~~~~~---~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (498)
                      +.....    .......+.+   ..-.....+|.++|..+.+...|.+|..|++..........                
T Consensus       287 ~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~----------------  350 (441)
T d1qnia2         287 IDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGD----------------  350 (441)
T ss_dssp             GGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTC----------------
T ss_pred             eehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccC----------------
Confidence            863210    0000111111   11224556899999988999999999999985311000000                


Q ss_pred             cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec
Q 010883          379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH  425 (498)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  425 (498)
                              .....+..+..|-. ........+.+++|||+||++++.
T Consensus       351 --------~~~~v~~~~~v~y~-~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         351 --------RVNYIRQKLDVQYQ-PGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             --------CCCCEEEEEECSSC-EEEEEETTTTSTTCCCCEEEEEES
T ss_pred             --------CCceeEeccccccC-CCCCccccccccCCCCcEEEecCc
Confidence                    00123334444432 233445566789999999999954

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.1e-09  Score=94.38  Aligned_cols=239  Identities=15%  Similarity=0.202  Sum_probs=140.7

Q ss_pred             eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC---eEEEEECCCCceeccccccccccCccccccCC
Q 010883          154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADD  230 (498)
Q Consensus       154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
                      .|.|.|.+.... ..+...   ...+...+|||||+.||......   .+.+.+..++.......               
T Consensus        20 ~l~i~d~dG~~~-~~l~~~---~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~---------------   80 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRS---PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------------   80 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEE---SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC---------------
T ss_pred             EEEEEcCCCCCc-EEEecC---CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee---------------
Confidence            577778765422 222222   23578899999999999876543   47777777665543332               


Q ss_pred             CCceecEEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          231 GGYSFGIFSLKFSTDGRELVAGSSD-DC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g~~d-g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                        +........|+|+|+.++..... +.  +..+....... ..............+++.....+++...+|...+|...
T Consensus        81 --~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~  157 (269)
T d2hqsa1          81 --FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  157 (269)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             --eecccccceecCCCCeeeEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeee
Confidence              22367788999999988876542 22  33333333322 22333444445556664444455555556654444432


Q ss_pred             cccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883          308 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH  386 (498)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (498)
                      .   .......+...........|+|+++.++..+.++ ...+|......                              
T Consensus       158 ~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~------------------------------  204 (269)
T d2hqsa1         158 I---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT------------------------------  204 (269)
T ss_dssp             T---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT------------------------------
T ss_pred             c---ccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccc------------------------------
Confidence            1   2333444555666777889999999988766543 44444333211                              


Q ss_pred             CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883          387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS  458 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~  458 (498)
                         ..........       ....|.|||||+.|+..+..   ..|+++++..+.. ..+....+.+...+|||-
T Consensus       205 ---~~~~~~~~~~-------~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         205 ---GGVQVLSSTF-------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ---CCEEECCCSS-------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             ---ccceEeecCc-------cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence               1111111111       11345788999998866543   4789999976655 456556778889999984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.25  E-value=4.2e-09  Score=94.18  Aligned_cols=198  Identities=12%  Similarity=0.058  Sum_probs=135.8

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce--
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM--  210 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~--  210 (498)
                      .+..++++|||+++++...+++|..|+.....  ....   .....+.+++|+|+|+++++...++.+.+|+......  
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~---~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA---TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE---ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEE---cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            46789999999999999999999888866542  2222   2234799999999999998888888888887654321  


Q ss_pred             eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec----------cCCCee
Q 010883          211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----------HTSDVN  280 (498)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~----------~~~~v~  280 (498)
                      .......               .......+++.++|+++++-+.++.+..+|...+........          ......
T Consensus       104 ~~~~~~~---------------~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  168 (302)
T d2p4oa1         104 ETLLTLP---------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  168 (302)
T ss_dssp             EEEEECT---------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             eeccccC---------------CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence            1111111               112578899999999888888899999999888764333221          112346


Q ss_pred             EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      .+.+.  .+.++++.+..+.|..++........ ....+ ........+++.++|+++++...++.|..++...
T Consensus       169 gi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         169 GLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPG-EPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEEBCTTSCBC-CCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             ccccc--CCceeeecCCCCeEEecccccccccc-ccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            66664  35567777788899988876322111 11111 1233456799999999888888889999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.23  E-value=8.8e-09  Score=92.36  Aligned_cols=250  Identities=11%  Similarity=0.121  Sum_probs=154.9

Q ss_pred             EEEEEeCCCCCeEEEEEC-------CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883          179 VTDTSLSPDQRHLVYASM-------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA  251 (498)
Q Consensus       179 v~~~~~sp~~~~l~~~s~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~  251 (498)
                      ...++|.|+|+++++...       ++.|..||..++...........            ...+....++|.++++.+++
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~------------~~~g~P~Gl~~~~dg~~l~v   87 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN------------GYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET------------TEECCEEEEEECSSSSEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc------------cCCCcceeEEEeCCCCEEEE
Confidence            456789999997776432       46788899887765333221110            11124678999999998888


Q ss_pred             EeCCCeEEEEECCCCeeeEEEeccC----CCeeEEEEeCCCCCEEEEeeC---------------CCeEEEEcCccccCC
Q 010883          252 GSSDDCIYVYDLEANKLSLRILAHT----SDVNTVCFGDESGHLIYSGSD---------------DNLCKVWDRRCLNVK  312 (498)
Q Consensus       252 g~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~s~---------------dg~i~vwd~~~~~~~  312 (498)
                      +...+.|..++..............    ...+.+++. +++++.++-..               +|.|..++.     .
T Consensus        88 ad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-----d  161 (314)
T d1pjxa_          88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----D  161 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----T
T ss_pred             EECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEEee-----c
Confidence            8877789999987654322111111    135778886 77887776432               234555543     2


Q ss_pred             CceeEEeccccccEEEEEEcCCCC-----EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883          313 GKPAGVLMGHLEGITFIDSRGDGR-----YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP  387 (498)
Q Consensus       313 ~~~~~~~~~~~~~v~~l~~~~~~~-----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (498)
                      ++.. .+.......+.++|+|++.     ++++-+..+.|..||+........                           
T Consensus       162 g~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~---------------------------  213 (314)
T d1pjxa_         162 GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN---------------------------  213 (314)
T ss_dssp             SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE---------------------------
T ss_pred             Ccee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce---------------------------
Confidence            3322 2223334457889988764     445556778888888754211000                           


Q ss_pred             CCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEe
Q 010883          388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS  466 (498)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~  466 (498)
                       .+....+..... ...    -.+++..+|++.++....+.|.+||...++.+..+.......++++|.|+++ +++|.+
T Consensus       214 -~~~~~~~~~~~~-~~p----dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         214 -KKVWGHIPGTHE-GGA----DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             -EEEEEECCCCSS-CEE----EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             -eeEEEEcccccc-ccc----eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence             001111111110 011    1224556899888877889999999988887777766667789999999997 556777


Q ss_pred             CCCcEEEecCCCCC
Q 010883          467 WDGDVVRWEFPGNG  480 (498)
Q Consensus       467 ~Dg~i~iw~~~~~~  480 (498)
                      .+|.|...++....
T Consensus       288 ~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         288 ENNAVWKFEWQRNG  301 (314)
T ss_dssp             TTTEEEEEECSSCB
T ss_pred             CCCcEEEEECCCCC
Confidence            78988888876554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=5.2e-09  Score=91.33  Aligned_cols=197  Identities=9%  Similarity=0.025  Sum_probs=127.0

Q ss_pred             ceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883          133 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME  211 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~  211 (498)
                      .=..++++++|++.++.. ..+.|..++.......  .....+ ......++++++++++++....+.+++++-.+....
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~--~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEE--ECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE--EeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            347999999999766654 4577777766543222  122222 224677899999987777666666666554443322


Q ss_pred             ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCE
Q 010883          212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL  291 (498)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  291 (498)
                      ....                 ....+.++++.++++++++-..+..+..++...................+++. +++++
T Consensus        92 ~~~~-----------------~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~~  153 (260)
T d1rwia_          92 LPFD-----------------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNV  153 (260)
T ss_dssp             CCCC-----------------SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC-TTCCE
T ss_pred             eeee-----------------eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec-CCCCE
Confidence            1111                 11257889999999987776667778888776544322222223456789996 67888


Q ss_pred             EEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       292 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      +++...++.|..+|..    .................|++.++|+++++....+.|..++...
T Consensus       154 ~v~~~~~~~i~~~d~~----~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             eeeccccccccccccc----cceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            8888888999999975    2222222223445678999999999888888888888887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.18  E-value=2.7e-09  Score=98.11  Aligned_cols=219  Identities=10%  Similarity=0.027  Sum_probs=119.8

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE---CCCeEEEEECCC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS---MSPIVHIVDVGS  207 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s---~d~~i~iwd~~~  207 (498)
                      ...+.-++|+|++++|.++.. +.+..|.+.....+...... ........++++++++.+....   ..+.|..+.+..
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASH-PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeee-cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            344556999999999988765 56778877643222222111 1112356788899998543332   245666655432


Q ss_pred             -CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeE---EEe--ccCCCee
Q 010883          208 -GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSL---RIL--AHTSDVN  280 (498)
Q Consensus       208 -~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~---~~~--~~~~~v~  280 (498)
                       +..............-.............+.++.|+|||++++++.. ...|.+|+......+.   ...  .......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence             11111111100000000000000001114789999999998888764 4578888765432221   111  2346788


Q ss_pred             EEEEeCCCCCEEE-EeeCCCeEEEEcCccccCCCceeEEec-----------------cccccEEEEEEcCCCCEEEEEe
Q 010883          281 TVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLM-----------------GHLEGITFIDSRGDGRYLISNG  342 (498)
Q Consensus       281 ~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------------~~~~~v~~l~~~~~~~~l~s~~  342 (498)
                      .++|+ +++++++ +...+++|.+|++....  ...+....                 .+......+.++|||++|+++.
T Consensus       197 ~i~f~-pdg~~~yv~~e~~~~V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         197 WVAMH-PTGNYLYALMEAGNRICEYVIDPAT--HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEEEC-TTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             EEEEC-CCCceEEEeccCCCEEEEEEecCCC--ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            99998 6677664 45568899999986221  11111110                 1122356789999999988764


Q ss_pred             C-C-----CcEEEEeCCC
Q 010883          343 K-D-----QAIKLWDIRK  354 (498)
Q Consensus       343 ~-d-----g~i~iwd~~~  354 (498)
                      . +     +.|..|++..
T Consensus       274 r~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             EESSTTSCCEEEEEEECT
T ss_pred             ccCCCccceEEEEEEecC
Confidence            3 1     2366666654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=1e-07  Score=83.79  Aligned_cols=243  Identities=12%  Similarity=0.153  Sum_probs=158.5

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEE-eCC
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAG-SSD  255 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g-~~d  255 (498)
                      ....++++|+++++++-..++.|++||.+ ++....+.......          +.......+++.++. ..+++. +.+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~----------~~~~~p~~~~~~~~~~~~~~~~~~~~   92 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRD----------SQLLYPNRVAVVRNSGDIIVTERSPT   92 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSST----------TCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCc----------ccccccccccccccccccceeccCCc
Confidence            46889999999988776778899999965 44333221111000          111234556665544 344433 345


Q ss_pred             CeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe--ccccccEEEEEEc
Q 010883          256 DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEGITFIDSR  332 (498)
Q Consensus       256 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~~~  332 (498)
                      +.|.+++. .++....+. ........+++. +++.++++....+.+.+++.     .++.+..+  ..+......+++.
T Consensus        93 ~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~i~~d  165 (279)
T d1q7fa_          93 HQIQIYNQ-YGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ-----NGNVLHKFGCSKHLEFPNGVVVN  165 (279)
T ss_dssp             CEEEEECT-TSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECT-----TSCEEEEEECTTTCSSEEEEEEC
T ss_pred             cccccccc-cccceeecCCCcccccceeccc-cCCcEEEEeeccceeeEecc-----CCceeecccccccccccceeeec
Confidence            67777775 455555553 334567788886 77888888888888988886     45555544  3455678889999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883          333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV  412 (498)
Q Consensus       333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (498)
                      ++++.+++....+.|++||...                                   +.+..+.........    ..++
T Consensus       166 ~~g~i~v~d~~~~~V~~~d~~G-----------------------------------~~~~~~g~~g~~~~P----~gia  206 (279)
T d1q7fa_         166 DKQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGITNYP----IGVG  206 (279)
T ss_dssp             SSSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTSCSE----EEEE
T ss_pred             cceeEEeeeccccceeeeecCC-----------------------------------ceeeeecccccccCC----cccc
Confidence            9999888888889999999754                                   333333211111111    1235


Q ss_pred             cCCCCcEEEEEec-CCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883          413 YSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN  479 (498)
Q Consensus       413 ~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~  479 (498)
                      ++++|+++++-.. ++.|.+|+ .+|+.+..+..  .......+++.|+|.+++ ++.+..|++|.+...
T Consensus       207 vD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         207 INSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             cccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            6678987776544 45799998 46887777643  234578999999997555 567899999998765

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=1.5e-08  Score=92.94  Aligned_cols=293  Identities=12%  Similarity=0.049  Sum_probs=150.7

Q ss_pred             EEEEEC--CCeEEEEE--CCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc-eeccccccccc
Q 010883          146 FVAGFQ--ASQIRIYD--VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIH  220 (498)
Q Consensus       146 la~~~~--dg~i~vw~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~-~~~~~~~~~~~  220 (498)
                      |++|+.  .+.|.++.  .+++...............+..|+|+|++++|.++.. +.+..|.+.... .......... 
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~-   82 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG-   82 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC-
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC-
Confidence            555543  45665544  4444321111111222334667999999999988765 567777765422 2111111000 


Q ss_pred             cCccccccCCCCceecEEEEEEcCCCCEEEEEe---CCCeEEEEECCCC-------------ee---eEE-EeccCCCee
Q 010883          221 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEAN-------------KL---SLR-ILAHTSDVN  280 (498)
Q Consensus       221 ~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~---~dg~i~vwd~~~~-------------~~---~~~-~~~~~~~v~  280 (498)
                                    .....+.++++++.+....   ..+.|..+.+...             +.   ... -......+.
T Consensus        83 --------------~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h  148 (365)
T d1jofa_          83 --------------GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH  148 (365)
T ss_dssp             --------------SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred             --------------CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcce
Confidence                          0233456666766432221   2344444433211             11   111 112234578


Q ss_pred             EEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCCce--eEEe--ccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 010883          281 TVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKP--AGVL--MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK  354 (498)
Q Consensus       281 ~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~--~~~~--~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~  354 (498)
                      ++.|+ |+++++++++. ...|.+|+...   .+..  ....  .........++|+|+++++++.. .+++|.+|++..
T Consensus       149 ~v~~s-PdG~~l~v~d~g~d~v~~~~~~~---~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         149 GMVFD-PTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             EEEEC-TTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEC-CCCCEEEEeeCCCCEEEEEEccC---CCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            99998 78887777654 45788887641   2221  1111  22345788999999999886555 578899999876


Q ss_pred             CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec------CCe
Q 010883          355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------DSC  428 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------dg~  428 (498)
                      .........         ......+....      ..  ...........    ....++|||++|+++..      .+.
T Consensus       225 ~~~~~~~~~---------~~~~~~~~~~~------~~--~~~~~~~~~~~----~~i~~spdG~~lyvsnr~~~~~~~~~  283 (365)
T d1jofa_         225 ATHMPVYTH---------HSFPLIPPGIP------DR--DPETGKGLYRA----DVCALTFSGKYMFASSRANKFELQGY  283 (365)
T ss_dssp             TTCCEEEEE---------EEEESSCTTCC------CB--CTTTSSBSEEE----EEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred             CCceEEEEe---------eeecccccccc------cc--ccccccccCCc----cceEECCCCCEEEEEcccCCCccceE
Confidence            432111000         00000000000      00  00000000111    12256779999988753      234


Q ss_pred             EEEEECCCCcEEE---E---eccCCCCeeeeEEcC-CCCeEEEE-eCCCcEEEecCCCC
Q 010883          429 VYVYDLVSGEQVA---A---LKYHTSPVRDCSWHP-SQPMLVSS-SWDGDVVRWEFPGN  479 (498)
Q Consensus       429 i~iwd~~~~~~~~---~---~~~h~~~v~~l~~sp-~~~~l~s~-~~Dg~i~iw~~~~~  479 (498)
                      |..|++.....+.   .   .........+++++| +|++|+.+ ..++.|.+|+++..
T Consensus       284 i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         284 IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            7777775432221   1   112334567899998 78977666 56799999998654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=2.1e-07  Score=81.73  Aligned_cols=241  Identities=15%  Similarity=0.141  Sum_probs=154.1

Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecC---CCceeEEEEEeCCCC-CeEEEE-ECCCeEEEEECCCC
Q 010883          134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK---SLRWTVTDTSLSPDQ-RHLVYA-SMSPIVHIVDVGSG  208 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~-~~l~~~-s~d~~i~iwd~~~~  208 (498)
                      -..++++++|+++++-..+..|++||.+ |..+.......   ........+++.++. ..+++. +.++.|.+++... 
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g-  102 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-  102 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS-
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc-
Confidence            4789999999988887788899999976 44443332111   112234556655544 334333 3345777777543 


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeC
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGD  286 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~  286 (498)
                      .........               .......+++.++|.++++....+.+.+++.. ++.+..+.  .+......+++. 
T Consensus       103 ~~~~~~~~~---------------~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d-  165 (279)
T d1q7fa_         103 QFVRKFGAT---------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVN-  165 (279)
T ss_dssp             CEEEEECTT---------------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEEC-
T ss_pred             cceeecCCC---------------cccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeec-
Confidence            322221111               11257789999999988888778889888864 45555543  355667888886 


Q ss_pred             CCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCCCcccccc
Q 010883          287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNL  363 (498)
Q Consensus       287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~  363 (498)
                      ++++++++....+.|++||.     .++.+..+-  +.......|++.++|+.+++-.. ++.|.+|+...         
T Consensus       166 ~~g~i~v~d~~~~~V~~~d~-----~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G---------  231 (279)
T d1q7fa_         166 DKQEIFISDNRAHCVKVFNY-----EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---------  231 (279)
T ss_dssp             SSSEEEEEEGGGTEEEEEET-----TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---------
T ss_pred             cceeEEeeeccccceeeeec-----CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC---------
Confidence            77888888888999999997     456665553  34456789999999998777554 44688888542         


Q ss_pred             CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883          364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE  438 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  438 (498)
                                                ..+..+.........    +.+++.+||.+++ ++.++.|++|......
T Consensus       232 --------------------------~~~~~~~~~~~~~~p----~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         232 --------------------------QLISALESKVKHAQC----FDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             --------------------------CEEEEEEESSCCSCE----EEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             --------------------------CEEEEEeCCCCCCCE----eEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence                                      333333222111111    2235566887554 5678999999976653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=7.3e-08  Score=84.19  Aligned_cols=218  Identities=12%  Similarity=0.041  Sum_probs=130.1

Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEecc
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAH  275 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~  275 (498)
                      .|.|.|........+....                 ..+.+.+|||||+.||......   .+.+.+...+.. ..+..+
T Consensus        20 ~l~i~d~dG~~~~~l~~~~-----------------~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~   81 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSP-----------------QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASF   81 (269)
T ss_dssp             EEEEEETTSCSCEEEEEES-----------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECC
T ss_pred             EEEEEcCCCCCcEEEecCC-----------------CceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeee
Confidence            5777787765554443322                 2578899999999999875543   577778777665 455577


Q ss_pred             CCCeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCc--EEEEe
Q 010883          276 TSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQA--IKLWD  351 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~--i~iwd  351 (498)
                      ........|+ +++..++... .++...++....   ...................+++++..++.. ..++.  |.+.+
T Consensus        82 ~~~~~~~~~s-pdg~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~  157 (269)
T d2hqsa1          82 PRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDL---ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  157 (269)
T ss_dssp             SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEET---TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ecccccceec-CCCCeeeEeeecCCccceeeccc---ccccceeeeeccccccccccccccccceecccccCCceEeeee
Confidence            7888899998 6666666544 343333333221   122223333344445556677777655544 44554  44445


Q ss_pred             CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---e
Q 010883          352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---C  428 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~  428 (498)
                      +.....                                   .......      .....+.++|+++.++..+.++   .
T Consensus       158 ~~~~~~-----------------------------------~~~~~~~------~~~~~~~~spdg~~~~~~~~~~~~~~  196 (269)
T d2hqsa1         158 INGGAP-----------------------------------QRITWEG------SQNQDADVSSDGKFMVMVSSNGGQQH  196 (269)
T ss_dssp             TTSSCC-----------------------------------EECCCSS------SEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             cccccc-----------------------------------eeeeccc------ccccccccccccceeEEEeecCCcee
Confidence            444211                                   0111111      1223456888999988877654   4


Q ss_pred             EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC---CCcEEEecCCCCCC
Q 010883          429 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW---DGDVVRWEFPGNGE  481 (498)
Q Consensus       429 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~---Dg~i~iw~~~~~~~  481 (498)
                      +.+.+...+..  .+..+........|+|||+.|+..+.   ...|++|++.+...
T Consensus       197 i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         197 IAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             eeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            55556555543  33345566788899999998775543   34688899987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=3.3e-08  Score=86.07  Aligned_cols=236  Identities=10%  Similarity=0.045  Sum_probs=144.6

Q ss_pred             eEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883          178 TVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD  256 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg  256 (498)
                      ....+++.++|+..++.. ..+.+..++.......... ...               ......++++++|+++++....+
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~---------------~~~p~gvav~~~g~i~v~d~~~~   78 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNG---------------LYQPQGLAVDGAGTVYVTDFNNR   78 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-CCS---------------CCSCCCEEECTTCCEEEEETTTE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-cCC---------------ccCceEEEEcCCCCEEEeeeeec
Confidence            468999999999766544 4567777766543322111 110               01356788999999777766666


Q ss_pred             eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCC
Q 010883          257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDG  335 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~  335 (498)
                      .+++++-.+...+... .......++++. ++++++++-.....+..++..    . ...... .........+++++++
T Consensus        79 ~i~~~~~~~~~~~~~~-~~~~~p~~iavd-~~g~i~v~d~~~~~~~~~~~~----~-~~~~~~~~~~~~~p~~i~~~~~g  151 (260)
T d1rwia_          79 VVTLAAGSNNQTVLPF-DGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG----S-KTQTVLPFTGLNDPDGVAVDNSG  151 (260)
T ss_dssp             EEEECTTCSCCEECCC-CSCCSEEEEEEC-TTCCEEEEEGGGTEEEEECTT----C-SSCEECCCCSCCSCCEEEECTTC
T ss_pred             eeeeeeeccceeeeee-eeeeeccccccc-ccceeEeeccccccccccccc----c-ceeeeeeecccCCcceeeecCCC
Confidence            6666655544433222 223567899996 678888777777778888764    2 222221 1122445688999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883          336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST  415 (498)
Q Consensus       336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  415 (498)
                      +.+++...++.|..+|.....                                   ...+.... ....    ..+++++
T Consensus       152 ~~~v~~~~~~~i~~~d~~~~~-----------------------------------~~~~~~~~-~~~p----~gi~~d~  191 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAESNN-----------------------------------QVVLPFTD-ITAP----WGIAVDE  191 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTTCC-----------------------------------EEECCCSS-CCSE----EEEEECT
T ss_pred             CEeeeccccccccccccccce-----------------------------------eeeeeccc-cCCC----ccceeee
Confidence            988888888889999876521                                   11111000 0111    2235566


Q ss_pred             CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883          416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF  476 (498)
Q Consensus       416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~  476 (498)
                      +|+++++....+.|..++.............-.....++++++|.++++-..++.|+..+.
T Consensus       192 ~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         192 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            8888888777888998886554322222223346789999999988777666776665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.07  E-value=9.2e-08  Score=85.20  Aligned_cols=229  Identities=10%  Similarity=-0.005  Sum_probs=146.3

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC  257 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~  257 (498)
                      .+..++++|||+++++...++.|..|+.... ......                 ....+.+++|.++|+++++...++.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~-----------------~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-----------------VEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-----------------CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEEc-----------------CCCCcceEEEcCCCCeEEEecCCce
Confidence            4778999999999998888999988886543 222221                 1126889999999998888888888


Q ss_pred             EEEEECCCCee-eEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe----------ccccc
Q 010883          258 IYVYDLEANKL-SLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----------MGHLE  324 (498)
Q Consensus       258 i~vwd~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~  324 (498)
                      +..++...... ...+.  ......+.+++. ++++++++.+.++.+..+|..    ........          .....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T d2p4oa1          91 IPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVV----QPSGSIWLEHPMLARSNSESVFP  165 (302)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETT----TTEEEEEEECGGGSCSSTTCCSC
T ss_pred             EEEEEecccccceeeccccCCccccceeEEc-cCCCEEeeccccccceeeecc----CCcceeEecCCccceeeccCccc
Confidence            88887654322 12222  344567889996 788888888888888888875    22211111          11122


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883          325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL  404 (498)
Q Consensus       325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (498)
                      ....+.+.. +.++++.+..+.|..+++.........                            ....  ...      
T Consensus       166 ~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~----------------------------~~~~--~~~------  208 (302)
T d2p4oa1         166 AANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEP----------------------------EIFV--EQT------  208 (302)
T ss_dssp             SEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCC----------------------------EEEE--ESC------
T ss_pred             ccccccccC-CceeeecCCCCeEEecccccccccccc----------------------------cccc--CCC------
Confidence            355666654 345556667788888887653211100                            0000  000      


Q ss_pred             EEEEeccccCCCCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEE---cCCCCeEEEEeCC
Q 010883          405 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSW---HPSQPMLVSSSWD  468 (498)
Q Consensus       405 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~---sp~~~~l~s~~~D  468 (498)
                        .....+++++|++.++...++.|..++..... .+......-...++++|   ++|++.|+.++..
T Consensus       209 --~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         209 --NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             --CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             --CCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence              01234677799988888889999999875332 23334444456889999   6788877666544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.04  E-value=9.5e-07  Score=79.02  Aligned_cols=235  Identities=10%  Similarity=0.058  Sum_probs=144.1

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---  254 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---  254 (498)
                      .+..++|.++|++.++-...+.|..|+..++........                .......+++.+||+++++...   
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~----------------~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS----------------HKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------SSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC----------------CCCCeeEEEECCCCCEEEEecCCCc
Confidence            356789999998776666788898898877654322211                1125778999999997776543   


Q ss_pred             -CCeEEEEECCCCeeeEEEec--cCCCeeEEEEeCCCCCEEEEeeC------CCeEEEEcCccccCCCceeEEecccccc
Q 010883          255 -DDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEG  325 (498)
Q Consensus       255 -dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~  325 (498)
                       .+.|...+............  -....+.+++. +++++.++...      .+.+..++.     .+..+..+......
T Consensus       105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d-~~G~l~vtd~~~~~~~~~g~v~~~~~-----dg~~~~~~~~~~~~  178 (319)
T d2dg1a1         105 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSP-----DFRTVTPIIQNISV  178 (319)
T ss_dssp             SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECT-----TSCCEEEEEEEESS
T ss_pred             cceeEEEEcCCCceeeeeccCCCcccCCcceeEE-eccceeecccccccccCcceeEEEec-----ccceeEEEeeccce
Confidence             34466666665554433321  12346788886 78886665432      234555554     23334444334455


Q ss_pred             EEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883          326 ITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL  404 (498)
Q Consensus       326 v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (498)
                      .+.++|+|+++.|+ +-+..+.|..||+...........                         ...........   ..
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~-------------------------~~~~~~~~~~~---~P  230 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-------------------------ATIPYYFTGHE---GP  230 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-------------------------EEEEEECCSSS---EE
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCCCceecccc-------------------------ceeeeccCCcc---ce
Confidence            68899999998664 555678899999865221100000                         00000011111   01


Q ss_pred             EEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec------cCCCCeeeeEEcCCCCeEEEEeC
Q 010883          405 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------YHTSPVRDCSWHPSQPMLVSSSW  467 (498)
Q Consensus       405 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~sp~~~~l~s~~~  467 (498)
                          -.+++.++|++.++....+.|.+||. .|+.+..+.      ++...+++++|.++...+++...
T Consensus       231 ----dGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         231 ----DSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ----EEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ----eeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence                12245668998888888999999995 788888775      34456889999998886665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=5.4e-07  Score=80.39  Aligned_cols=207  Identities=17%  Similarity=0.162  Sum_probs=126.4

Q ss_pred             eEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEe-ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883          134 AYVSQFSADGSLFVAGFQ-------ASQIRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV  205 (498)
Q Consensus       134 v~~~~~s~dg~~la~~~~-------dg~i~vw~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~  205 (498)
                      .-.++|.++|+++++...       +|+|..||..++....... ......+....++|.++++.|+++...+.|..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            456789999998876432       4678899988774322211 11112224678999999998888888778888888


Q ss_pred             CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCeeeE
Q 010883          206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------------DDCIYVYDLEANKLSL  270 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---------------dg~i~vwd~~~~~~~~  270 (498)
                      .++..........   +.         .-...+.+++.++|++.++-..               .|.|+.++.. ++.. 
T Consensus       100 ~g~~~~~~~~~~~---g~---------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~-  165 (314)
T d1pjxa_         100 DGTFEEIAKKDSE---GR---------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-  165 (314)
T ss_dssp             TSCEEECCSBCTT---SC---------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-
T ss_pred             CCcEEEEEecccc---cc---------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Ccee-
Confidence            7654332221111   00         0013577899999987666422               2345555543 3332 


Q ss_pred             EEeccCCCeeEEEEeCCCC----CEEEEeeCCCeEEEEcCccccCCC--ceeEEecc-ccccEEEEEEcCCCCEEEEEeC
Q 010883          271 RILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNVKG--KPAGVLMG-HLEGITFIDSRGDGRYLISNGK  343 (498)
Q Consensus       271 ~~~~~~~~v~~~~~~~~~~----~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~  343 (498)
                      .+...-...+.++|++...    .++++-+..+.|..||+.......  +....+.. +......+++..+|++.++...
T Consensus       166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~  245 (314)
T d1pjxa_         166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC
Confidence            2333334457899984322    255555678899999875211000  01112221 1224567999999998888888


Q ss_pred             CCcEEEEeCCC
Q 010883          344 DQAIKLWDIRK  354 (498)
Q Consensus       344 dg~i~iwd~~~  354 (498)
                      .+.|.+||.+.
T Consensus       246 ~g~I~~~dp~~  256 (314)
T d1pjxa_         246 SSHIEVFGPDG  256 (314)
T ss_dssp             TTEEEEECTTC
T ss_pred             CCEEEEEeCCC
Confidence            89999999775

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.1e-08  Score=94.96  Aligned_cols=142  Identities=12%  Similarity=0.106  Sum_probs=93.2

Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---------CCeEEEEECCCC
Q 010883          138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIVDVGSG  208 (498)
Q Consensus       138 ~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---------d~~i~iwd~~~~  208 (498)
                      .|.+++.++.. ..+|.|.+||+.++..........-....+....||||+++++....         .+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            47777776654 35778999999887442222222222335777889999999888643         568899999988


Q ss_pred             ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCC---------
Q 010883          209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSD---------  278 (498)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~---------  278 (498)
                      ....+......              ...+....|||||+.||... ++.|++.+..++..++... +....         
T Consensus       102 ~~~~l~~~~~~--------------~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v  166 (465)
T d1xfda1         102 DPQSLDPPEVS--------------NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (465)
T ss_dssp             CCEECCCTTCC--------------SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             ceeeccCccCC--------------ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchh
Confidence            76544332211              11355678999999998876 5679999987776544332 11111         


Q ss_pred             --------eeEEEEeCCCCCEEEEee
Q 010883          279 --------VNTVCFGDESGHLIYSGS  296 (498)
Q Consensus       279 --------v~~~~~~~~~~~~l~s~s  296 (498)
                              -..+-|+ |+++.|+...
T Consensus       167 yeee~~~~~~a~~WS-PDgk~iaf~~  191 (465)
T d1xfda1         167 YEEEILKTHIAHWWS-PDGTRLAYAA  191 (465)
T ss_dssp             HHHTTSSSSEEEEEC-TTSSEEEEEE
T ss_pred             hhhhhccccceEEEC-CCCCeEEEEE
Confidence                    1467788 7888888764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.95  E-value=6.8e-07  Score=79.99  Aligned_cols=204  Identities=12%  Similarity=0.078  Sum_probs=126.7

Q ss_pred             CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----CCeEEEEECC
Q 010883          131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SPIVHIVDVG  206 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----d~~i~iwd~~  206 (498)
                      ...+-.++|.++|++.++-..++.|..|+.+++.......   ........+++++||+++++...    .+.+...+..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~---~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe---CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            3344689999999988887788999999988764333322   22235789999999998776543    2334555554


Q ss_pred             CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCCee
Q 010883          207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSDVN  280 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~v~  280 (498)
                      ++.........              .-...+..+++.++|++.++...      .+.+..++..... +..+...-...+
T Consensus       116 ~~~~~~~~~~~--------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pn  180 (319)
T d2dg1a1         116 GDNLQDIIEDL--------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVAN  180 (319)
T ss_dssp             SCSCEEEECSS--------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEE
T ss_pred             CceeeeeccCC--------------CcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceee
Confidence            44332221110              01125788999999986555322      2346666654433 333333334568


Q ss_pred             EEEEeCCCCCE-EEEeeCCCeEEEEcCccccCCCceeE----EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          281 TVCFGDESGHL-IYSGSDDNLCKVWDRRCLNVKGKPAG----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       281 ~~~~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      .++|+ ++++. +++-+..+.|..||+...........    ...........+++.++|++.++....+.|.+||..
T Consensus       181 Gia~s-~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         181 GIALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeeec-cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            89998 66664 45556788999998762211111111    111112335679999999988888889999999964

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.5e-07  Score=89.07  Aligned_cols=197  Identities=12%  Similarity=0.094  Sum_probs=110.4

Q ss_pred             ceEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883          133 RAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV  203 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw  203 (498)
                      .+....|||||++++....         .+.+.+||+.++... .+.........+....|||||+.||... ++.|.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-eccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            4567789999999887643         467899999987432 2222223333566688999999999876 5678888


Q ss_pred             ECCCCceeccccccccccCccccccCCC----CceecEEEEEEcCCCCEEEEEeCC-C----------------------
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSAADDG----GYSFGIFSLKFSTDGRELVAGSSD-D----------------------  256 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~~~~s~~g~~l~~g~~d-g----------------------  256 (498)
                      +..++....+..-..  .+..+....+.    .....-..+.|||||++||....| .                      
T Consensus       140 ~~~~~~~~~lt~~g~--~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~  217 (465)
T d1xfda1         140 AHVGKQAIRVVSTGK--EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH  217 (465)
T ss_dssp             SSSSSCCEEEECCCB--TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred             ecCCCceEEEecccC--cceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence            887765544332111  00000000000    000112467899999999986422 1                      


Q ss_pred             -----------eEEEEECCCCeeeEEEe------ccCCCeeEEEEeCCCCCEEEEeeC-C---CeEEEEcCccccCCCce
Q 010883          257 -----------CIYVYDLEANKLSLRIL------AHTSDVNTVCFGDESGHLIYSGSD-D---NLCKVWDRRCLNVKGKP  315 (498)
Q Consensus       257 -----------~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~s~-d---g~i~vwd~~~~~~~~~~  315 (498)
                                 .+.++|+.++.......      .....+..+.|+ +++++++.... +   ..+.++|..    .+..
T Consensus       218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~-~d~~~~~~~~nR~q~~~~i~~~d~~----tg~~  292 (465)
T d1xfda1         218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDAT----TGVC  292 (465)
T ss_dssp             CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETT----TCCE
T ss_pred             ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEc-CCCeEEEEEEccccccceEEEEcCC----CCcE
Confidence                       24455554443221111      112236778897 66665554332 2   257778876    4444


Q ss_pred             eEEeccccc-cE----EEEEEcCCCCEE
Q 010883          316 AGVLMGHLE-GI----TFIDSRGDGRYL  338 (498)
Q Consensus       316 ~~~~~~~~~-~v----~~l~~~~~~~~l  338 (498)
                      ...+..... .|    ....|+|||+.+
T Consensus       293 ~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         293 TKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             EEEEEEcCCceEeccCCceeEccCCCee
Confidence            433332211 11    235688888754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.86  E-value=6.1e-07  Score=78.56  Aligned_cols=115  Identities=15%  Similarity=0.212  Sum_probs=74.8

Q ss_pred             EEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-C-----CeEEEEECCCCc
Q 010883          138 QFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S-----PIVHIVDVGSGT  209 (498)
Q Consensus       138 ~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d-----~~i~iwd~~~~~  209 (498)
                      ..|||  |+.+|..+ ++.|.+.|+.+++.. ++   ..+.+.+...+|||||+.||.... +     ..|.+++..+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~L---t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KI---VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EE---ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EE---ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            36788  99988765 567888899987543 22   223446888999999999997643 1     248888888887


Q ss_pred             eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCe
Q 010883          210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANK  267 (498)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~  267 (498)
                      ...+........          ..........|+|+|+.|+.....      ..+...+...+.
T Consensus        80 ~~~lt~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          80 IKRITYFSGKST----------GRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             EEECCCCCEEEE----------TTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             eEEeeecCCCcc----------CccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            655533221110          122345678999999988876432      234555555444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.63  E-value=0.00012  Score=63.95  Aligned_cols=227  Identities=16%  Similarity=0.162  Sum_probs=136.1

Q ss_pred             EEeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEE
Q 010883          182 TSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV  260 (498)
Q Consensus       182 ~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~v  260 (498)
                      ..|.+....|.... ..+.|..||..+++... ....                 ..+.++++.++|.++++ +.+ .|.+
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~~-----------------~~~~~i~~~~dg~l~va-~~~-gl~~   82 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKTV-HALP-----------------FMGSALAKISDSKQLIA-SDD-GLFL   82 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECS-----------------SCEEEEEEEETTEEEEE-ETT-EEEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EECC-----------------CCcEEEEEecCCCEEEE-EeC-ccEE
Confidence            45776544444443 56789999988876532 2211                 15788999999875554 555 5999


Q ss_pred             EECCCCeeeEEEec-c---CCCeeEEEEeCCCCCEEEEeeC----CCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883          261 YDLEANKLSLRILA-H---TSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR  332 (498)
Q Consensus       261 wd~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  332 (498)
                      +|..+++....... .   ...++.+.+. +++++.++...    .+.-.+|.+.    .++..... ......+.++|+
T Consensus        83 ~d~~tg~~~~l~~~~~~~~~~~~nd~~vd-~~G~iw~~~~~~~~~~~~g~l~~~~----~g~~~~~~-~~~~~~Ng~~~s  156 (295)
T d2ghsa1          83 RDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA----KGKVTKLF-ADISIPNSICFS  156 (295)
T ss_dssp             EETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE----TTEEEEEE-EEESSEEEEEEC
T ss_pred             eecccceeeEEeeeecCCCcccceeeEEC-CCCCEEEEeccccccccceeEeeec----CCcEEEEe-eccCCcceeeec
Confidence            99998876433221 1   1246778875 77877665432    2234555554    34333333 334456789999


Q ss_pred             CCCCEEEE-EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883          333 GDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP  411 (498)
Q Consensus       333 ~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (498)
                      ++++.++. -+..+.|..|++..........                          ........+..  ...    ...
T Consensus       157 ~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~--------------------------~~~~~~~~~~~--g~p----dG~  204 (295)
T d2ghsa1         157 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGK--------------------------AEVFIDSTGIK--GGM----DGS  204 (295)
T ss_dssp             TTSCEEEEEETTTCEEEEEEBCTTTCCBSSC--------------------------CEEEEECTTSS--SEE----EEE
T ss_pred             CCCceEEEeecccceeeEeeecccccccccc--------------------------eEEEeccCccc--ccc----cce
Confidence            99986654 4556788888875422111000                          01111111111  111    122


Q ss_pred             ccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc-CCCC-eEEEEeC
Q 010883          412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQP-MLVSSSW  467 (498)
Q Consensus       412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~-~l~s~~~  467 (498)
                      ++..+|++.++....+.|..||. .|+.+..+.-....+++++|- ||.+ +++|+..
T Consensus       205 ~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         205 VCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            45568888877777889999995 788888887656679999995 6666 4454443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.59  E-value=8.8e-05  Score=64.90  Aligned_cols=199  Identities=13%  Similarity=0.100  Sum_probs=127.9

Q ss_pred             EEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883          136 VSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       136 ~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~  214 (498)
                      ...|++. +++..+--..+.|.-||..++....  ...   ...+.++++.+++.++++ +.+ .+.++|..+++.....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~--~~~---~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTV--HAL---PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--EEC---SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE--EEC---CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            4568875 4455554467899999999884322  222   226888999999877765 444 5889999988765443


Q ss_pred             cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883          215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH  290 (498)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (498)
                      .....            .....++++.+.|+|++.++...    .+.-.+|.+..++..... ..-...+.++|++....
T Consensus        95 ~~~~~------------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-~~~~~~Ng~~~s~d~~~  161 (295)
T d2ghsa1          95 ELESD------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADISIPNSICFSPDGTT  161 (295)
T ss_dssp             CSSTT------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EEESSEEEEEECTTSCE
T ss_pred             eeecC------------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe-eccCCcceeeecCCCce
Confidence            32211            11226889999999986555432    234456666667654444 33345688999844444


Q ss_pred             EEEEeeCCCeEEEEcCcccc--CCC--ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          291 LIYSGSDDNLCKVWDRRCLN--VKG--KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       291 ~l~s~s~dg~i~vwd~~~~~--~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      ++++-+..+.|..|++....  ...  .......+.......+++..+|++.++.-..+.|..||...
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence            55666778899998874211  111  12223334455678899999999888877788899999653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.36  E-value=6.6e-05  Score=68.64  Aligned_cols=160  Identities=15%  Similarity=0.121  Sum_probs=97.0

Q ss_pred             ceEEEEEcCCCCEEEEEECCC-----------eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-CeE
Q 010883          133 RAYVSQFSADGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIV  200 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~~i  200 (498)
                      ++.......+|++++.|+.+.           .+.+||..++.-.........+.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            445566677899999888521           37799998873221111112221123355788999999988765 589


Q ss_pred             EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEEEec
Q 010883          201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILA  274 (498)
Q Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~~  274 (498)
                      .+||..+.............               .-.+++..+||+.++.|+.+      ..+.+||..+.+....-..
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r---------------~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~  165 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVAR---------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNA  165 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCC---------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTS
T ss_pred             eEecCccCcccccccccccc---------------cccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCC
Confidence            99999887765444332211               22346777899998888753      3589999988765321100


Q ss_pred             ---------cC----CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883          275 ---------HT----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       275 ---------~~----~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~  307 (498)
                               +.    ..-....+...+++.++.+..++.+.+++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         166 KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             CSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             cccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence                     00    0001122223567777777777777777765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.29  E-value=8.4e-05  Score=66.34  Aligned_cols=193  Identities=12%  Similarity=0.161  Sum_probs=116.5

Q ss_pred             EEEEECCCeEEEEECCCCeEEEEEeecCCCc------------------------------------eeE--EEEEeCC-
Q 010883          146 FVAGFQASQIRIYDVERGWKIQKDILAKSLR------------------------------------WTV--TDTSLSP-  186 (498)
Q Consensus       146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~------------------------------------~~v--~~~~~sp-  186 (498)
                      +.+|+..|.|+|+-+.+...+..+.......                                    +..  -.+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5567888999999888775555432221000                                    000  1344443 


Q ss_pred             --CCCeEEEEEC-CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCC------
Q 010883          187 --DQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSD------  255 (498)
Q Consensus       187 --~~~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~d------  255 (498)
                        ||++|.+... ++.|.+.|+.+.++..+..++...               .+..++..+  +-.+++.++..      
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~---------------~~HG~r~~~~p~T~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK---------------GIHGLRPQKWPRSNYVFCNGEDETPLVN  160 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC---------------SEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCC---------------CCceeecccCCCeEEEEccCccccccCC
Confidence              7888888774 779999999998876665554322               345555544  44567666653      


Q ss_pred             ------------CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC---------------eEEEEcCcc
Q 010883          256 ------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---------------LCKVWDRRC  308 (498)
Q Consensus       256 ------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---------------~i~vwd~~~  308 (498)
                                  +.+.++|..+.+...++.- .+....+.++ ++++++++.+.+.               .+.++++..
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s-~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r  238 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  238 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             CCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccC-CCCCEEEEEeccccCCcchhhcccccceEEEEechHH
Confidence                        2367889999888776653 3456678887 7788888776431               233333210


Q ss_pred             c---------------------cCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC
Q 010883          309 L---------------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKM  355 (498)
Q Consensus       309 ~---------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~  355 (498)
                      .                     ......+..+..-......+.++|||+++++++ .+.++.++|+++.
T Consensus       239 ie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         239 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             hHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence            0                     000111111111122345688999999987665 5789999999864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=0.0016  Score=54.89  Aligned_cols=260  Identities=12%  Similarity=0.181  Sum_probs=158.9

Q ss_pred             CCeEEEEECCCCeE-EEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCC
Q 010883          152 ASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD  230 (498)
Q Consensus       152 dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
                      ...|.|-|+.++.. ..+..   ..    -+.-.+|..+.||.-+ ..++.++|+++.+......+.+            
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi---~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e------------  103 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI---SA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------  103 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC---CC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS------------
T ss_pred             CceEEEEECCCCCcceeccc---ch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC------------
Confidence            34788999976543 22222   11    2344689999888766 5689999999988777666554            


Q ss_pred             CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccC----CCeeEEEEeCCCCCEEEEee-------CC
Q 010883          231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT----SDVNTVCFGDESGHLIYSGS-------DD  298 (498)
Q Consensus       231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~s-------~d  298 (498)
                           +|.--.|-.+. .|+..+ +..|+-|+++.. .+...+..|.    ..|.....+ ++.++++..+       -.
T Consensus       104 -----~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~i~  175 (327)
T d1utca2         104 -----DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVV  175 (327)
T ss_dssp             -----CCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSCEEEEEEEEEETTEEE
T ss_pred             -----CcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEEC-CCCCEEEEEeEecCCCcee
Confidence                 56667787554 465554 457999999543 3455555443    345555554 6667665443       23


Q ss_pred             CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---CEEEEEe---CCCcEEEEeCCCCCC-ccccccCccccccc
Q 010883          299 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNG---KDQAIKLWDIRKMSS-NASCNLGFRSYEWD  371 (498)
Q Consensus       299 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~---~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~  371 (498)
                      |.+.+|..     ..+.-+.+.+|......+.+..+.   ..++.+.   ..+.+.|.++..... ...+.       ..
T Consensus       176 G~mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~-------kk  243 (327)
T d1utca2         176 GAMQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-------KK  243 (327)
T ss_dssp             EEEEEEET-----TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC-------CE
T ss_pred             EEEEEEEe-----ccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc-------ce
Confidence            67889998     456777888887766665554322   2333322   235788888876321 11110       00


Q ss_pred             ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCee
Q 010883          372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR  451 (498)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~  451 (498)
                      ...+.++|+...                  ...+..    ..|+.-..++.-+.-|.|++||+.++.++..-+-...+|.
T Consensus       244 ~vdi~fppea~~------------------DFPvam----qvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         244 AVDVFFPPEAQN------------------DFPVAM----QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EEECCCCTTCTT------------------CCEEEE----EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             eEEEECCccccC------------------CcEEEE----EeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence            011111221110                  111112    2334556888889999999999999999988877777777


Q ss_pred             eeEEcCCCCeEEEEeCCCcEEE
Q 010883          452 DCSWHPSQPMLVSSSWDGDVVR  473 (498)
Q Consensus       452 ~l~~sp~~~~l~s~~~Dg~i~i  473 (498)
                      ..+-+.+..-++....+|.|.-
T Consensus       302 ~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         302 VTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEE
T ss_pred             EeccCCCCceEEEECCCCeEEE
Confidence            6666666556666667887653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.10  E-value=7.5e-05  Score=64.61  Aligned_cols=208  Identities=12%  Similarity=0.106  Sum_probs=109.1

Q ss_pred             CCCCCccccCCCCceEEEEEcCCCCEEEEEEC-C-----CeEEEEECCCCeEEEEEeec---CCCceeEEEEEeCCCCCe
Q 010883          120 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-A-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRH  190 (498)
Q Consensus       120 ~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~-d-----g~i~vw~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~  190 (498)
                      +...+..|..+.+.+...+|||||+.||.... +     ..|.+++..++.........   ...........|+|+++.
T Consensus        29 ~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~  108 (281)
T d1k32a2          29 KSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL  108 (281)
T ss_dssp             TTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             CCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE
Confidence            44445667778888999999999999986542 2     24778888887443211110   112234567889999999


Q ss_pred             EEEEECC------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------
Q 010883          191 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------  255 (498)
Q Consensus       191 l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---------  255 (498)
                      |+.....      ..+...+...+........                   ......+.+.+..++.....         
T Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (281)
T d1k32a2         109 IISTDAMQPFSSMTCLYRVENDGINFVPLNLG-------------------PATHILFADGRRVIGRNTFELPHWKGYRG  169 (281)
T ss_dssp             EEEECTTSSSTTCCEEEEEEGGGTEEEECCSC-------------------SCSEEEEETTEEEEEESCSCCTTSTTCCS
T ss_pred             EEEEEccCCCccceeeeeecCCCceeEEecCC-------------------ccceeeecCCCeEEEeeccccceeeeecc
Confidence            9876432      2345555544433221110                   11122233333333322211         


Q ss_pred             --CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC--eEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883          256 --DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS  331 (498)
Q Consensus       256 --g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~  331 (498)
                        ....+......... ....+........+. .+ .++.....++  .|.++|+.     +.....+..+.. .....|
T Consensus       170 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~d~~-----g~~~~~lt~~~~-~~~~~~  240 (281)
T d1k32a2         170 GTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIV-GH-RIYFITDIDGFGQIYSTDLD-----GKDLRKHTSFTD-YYPRHL  240 (281)
T ss_dssp             TTCCEEEEEEETTEEE-EEECCSSCCEEEEEE-TT-EEEEEECTTSSCEEEEEETT-----SCSCEECCCCCS-SCEEEE
T ss_pred             CCcceeeeecccccee-eccCCccccceeeee-cc-ccceecccccccceEEEeCC-----CCceEEeecCCC-cccccC
Confidence              11222222222222 222334444555555 32 3333333333  56677774     333334433322 223468


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883          332 RGDGRYLISNGKDQAIKLWDIRKMS  356 (498)
Q Consensus       332 ~~~~~~l~s~~~dg~i~iwd~~~~~  356 (498)
                      +|||+.|+.. .++.|+++|+.+.+
T Consensus       241 SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         241 NTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             EESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             cCCCCEEEEE-eCCEEEEEECCCCC
Confidence            9999988764 46789999998754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.91  E-value=0.0067  Score=53.96  Aligned_cols=198  Identities=10%  Similarity=0.037  Sum_probs=118.2

Q ss_pred             EEEEcC---CCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCC-----------
Q 010883          136 VSQFSA---DGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSP-----------  198 (498)
Q Consensus       136 ~~~~s~---dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~-----------  198 (498)
                      .+.|..   ||++|++.. .+++|-+-|+.+-+..+.......  ..+..++..+  +..|++.++.+.           
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~--~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCC--CCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence            455655   899988876 478899999998765443322222  2456666654  556777766532           


Q ss_pred             -------eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---------------
Q 010883          199 -------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---------------  256 (498)
Q Consensus       199 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg---------------  256 (498)
                             .+.++|.++.+.........                 ....+.++++|+++++.+.+.               
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V~g-----------------~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D  229 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLVSG-----------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  229 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEESS-----------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             chhhcceEEEEEecCCceEEEEeeeCC-----------------ChhccccCCCCCEEEEEeccccCCcchhhcccccce
Confidence                   36677887776654433321                 344688999999988876431               


Q ss_pred             eEEEEE-----------------------CCC--C-eeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccc
Q 010883          257 CIYVYD-----------------------LEA--N-KLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCL  309 (498)
Q Consensus       257 ~i~vwd-----------------------~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~  309 (498)
                      .+.+++                       ...  + ..+..+ .-......+..+ |++++++++ .-+.++.|+|++..
T Consensus       230 ~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yI-PVpKsPHGV~vS-PDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         230 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYI-PIANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEE-EEESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEE-ecCCCCCceEEC-CCCCEEEEeCCcCCcEEEEEehhh
Confidence            133333                       322  1 111122 222334667887 667666554 56889999998632


Q ss_pred             cC----C---CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883          310 NV----K---GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK  354 (498)
Q Consensus       310 ~~----~---~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  354 (498)
                      ..    .   ...+..-....-.-..-+|..+|....+.--|.+|.-|++..
T Consensus       308 ~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         308 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             HHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             hhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            10    0   111111111223445678888887667777899999999864

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.81  E-value=0.0037  Score=59.63  Aligned_cols=55  Identities=11%  Similarity=0.062  Sum_probs=39.3

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      |.|.-+|+.+|+.+.+... ..+..+-..+..+.++++++.||.++-+|..++++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence            5788999999998877652 222222223335667888999999999999888764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.77  E-value=0.0045  Score=55.80  Aligned_cols=219  Identities=13%  Similarity=0.030  Sum_probs=115.0

Q ss_pred             CCceEEEEEcCCCCEEEEEECC-CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC------CeEEEE
Q 010883          131 TSRAYVSQFSADGSLFVAGFQA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIV  203 (498)
Q Consensus       131 ~~~v~~~~~s~dg~~la~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d------~~i~iw  203 (498)
                      .......++.+||++++.|+.+ ..+.+||..++.-. ........+ .-...+..+|+++++.++.+      ..+.+|
T Consensus        75 ~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~-~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y  152 (387)
T d1k3ia3          75 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY  152 (387)
T ss_dssp             CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-ECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             ccceeEEEEecCCcEEEeecCCCcceeEecCccCccc-ccccccccc-cccceeeecCCceeeeccccccccccceeeee
Confidence            3344567899999999998765 57999999887332 222222222 22356677899999988753      368999


Q ss_pred             ECCCCceeccccccccccCccccc-cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe------ccC
Q 010883          204 DVGSGTMESLANVTEIHDGLDFSA-ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL------AHT  276 (498)
Q Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~------~~~  276 (498)
                      |..+.+.................. .....   .-..+...++|+.++.+...+.+.+++..+........      .+.
T Consensus       153 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (387)
T d1k3ia3         153 SPSSKTWTSLPNAKVNPMLTADKQGLYRSD---NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP  229 (387)
T ss_dssp             ETTTTEEEEETTSCSGGGCCCCTTGGGTTT---CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred             cCCCCceeecCCCcccccccccccceeecc---ceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCc
Confidence            999887654333221111000000 00000   01112334578888888888888888888776432211      011


Q ss_pred             C--CeeEEEEeCCCCCEEEEeeCCC--------eEEEEcCccccCCCceeEEec--cccccEEEEEEcCCCCEEEEEeCC
Q 010883          277 S--DVNTVCFGDESGHLIYSGSDDN--------LCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKD  344 (498)
Q Consensus       277 ~--~v~~~~~~~~~~~~l~s~s~dg--------~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~d  344 (498)
                      .  .-.++.+...++++++.|+...        ...+.++..............  .+...-.+....+|+++++.|+.+
T Consensus       230 ~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~  309 (387)
T d1k3ia3         230 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  309 (387)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             ccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcc
Confidence            1  1123334334566777776421        233333321111111111111  011112345556899999988854


Q ss_pred             C-----------cEEEEeCCC
Q 010883          345 Q-----------AIKLWDIRK  354 (498)
Q Consensus       345 g-----------~i~iwd~~~  354 (498)
                      .           .+.+||..+
T Consensus       310 ~~~~~~~~~~~~~ve~Ydp~~  330 (387)
T d1k3ia3         310 RGIPFEDSTPVFTPEIYVPEQ  330 (387)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGG
T ss_pred             cCccCCCCcEeceEEEEECCC
Confidence            2           356677654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.75  E-value=0.02  Score=54.68  Aligned_cols=168  Identities=14%  Similarity=0.118  Sum_probs=91.8

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCceeccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~~~~  214 (498)
                      +.+++.++.|+.|.-.|..+|+.+........+..  ..+.-+|  -+..++++..      .|.|+-+|+.+|+.....
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~--~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVG--STLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT--CBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccc--cccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            34788888999999999999987776533221111  0111122  1334444432      489999999999987654


Q ss_pred             cccccccCccc----------------cccC---C---CCceecEEEEEEcCCCCEEEEEeC----------------CC
Q 010883          215 NVTEIHDGLDF----------------SAAD---D---GGYSFGIFSLKFSTDGRELVAGSS----------------DD  256 (498)
Q Consensus       215 ~~~~~~~~~~~----------------~~~~---~---~~h~~~i~~~~~s~~g~~l~~g~~----------------dg  256 (498)
                      ...........                ....   +   .+....-..+++.+...++..+..                ..
T Consensus       199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~  278 (596)
T d1w6sa_         199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM  278 (596)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccc
Confidence            33211100000                0000   0   000001123455666666655533                24


Q ss_pred             eEEEEECCCCeeeEEEec--cC-------CCeeEEEEeCCCC---CEEEEeeCCCeEEEEcCccccCCCcee
Q 010883          257 CIYVYDLEANKLSLRILA--HT-------SDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPA  316 (498)
Q Consensus       257 ~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~  316 (498)
                      .|.-.|+.+++.+-.+..  |.       .....+..-..++   ..++....+|.+.++|..    +++.+
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~----tG~~i  346 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT----DGALV  346 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT----TCCEE
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCC----CCcee
Confidence            588889999998776653  21       1122222211233   367788899999999987    55544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.74  E-value=0.0088  Score=56.99  Aligned_cols=163  Identities=12%  Similarity=0.051  Sum_probs=87.7

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCc-eeEEEEEeCCCCCeEEEEE------CCCeEEEEECCCCceecccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLAN  215 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~s------~d~~i~iwd~~~~~~~~~~~  215 (498)
                      +..++.++.|+.+.-.|.++|+..........+. ..++.--.-.++.. +.+.      ..|.|.-+|+.+|+......
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~v-ivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTV-LMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEE-EEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeE-EEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            3457778889999999999997766543322111 11111111113333 3433      26789999999999876544


Q ss_pred             ccccccCccccc------------------cCCC--Cc-eecE-EEEEEcCCCCEEEEEeC----------------CCe
Q 010883          216 VTEIHDGLDFSA------------------ADDG--GY-SFGI-FSLKFSTDGRELVAGSS----------------DDC  257 (498)
Q Consensus       216 ~~~~~~~~~~~~------------------~~~~--~h-~~~i-~~~~~s~~g~~l~~g~~----------------dg~  257 (498)
                      ............                  ....  .+ ...+ ...++.++...+..+..                ...
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence            322111000000                  0000  00 0111 23455566666655543                346


Q ss_pred             EEEEECCCCeeeEEEeccCCCee---------EEEEeCCCC---CEEEEeeCCCeEEEEcCc
Q 010883          258 IYVYDLEANKLSLRILAHTSDVN---------TVCFGDESG---HLIYSGSDDNLCKVWDRR  307 (498)
Q Consensus       258 i~vwd~~~~~~~~~~~~~~~~v~---------~~~~~~~~~---~~l~s~s~dg~i~vwd~~  307 (498)
                      +.-.|+++++.+-.+..+...+.         ..... .++   ..++.++.+|.+.++|..
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~-~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQP-VNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-ETTEEEEEEEEECTTSEEEEEETT
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeee-ccCccccceeeccccceEEEEecC
Confidence            88889999998877663322221         11111 223   256788899999999987

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.70  E-value=0.017  Score=54.80  Aligned_cols=169  Identities=15%  Similarity=0.168  Sum_probs=89.9

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCceeccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESLA  214 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~~~~  214 (498)
                      +..++.+..|+.|.-.|..+|+.+...........  ..+.-.|  ....++.+..      .|.|.-+|..+|+.....
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~--~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP--YSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS--CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccc--eeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence            45678888899999999999977766543222111  1111122  1223333322      367999999999987665


Q ss_pred             cccccccCcccc-------cc---CCC----CceecE-EEEEEcCCCCEEEEEeC-------------------CCeEEE
Q 010883          215 NVTEIHDGLDFS-------AA---DDG----GYSFGI-FSLKFSTDGRELVAGSS-------------------DDCIYV  260 (498)
Q Consensus       215 ~~~~~~~~~~~~-------~~---~~~----~h~~~i-~~~~~s~~g~~l~~g~~-------------------dg~i~v  260 (498)
                      ............       ..   ...    .....+ ..+++.+...++..+..                   ...|.-
T Consensus       195 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivA  274 (560)
T d1kv9a2         195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (560)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             eeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEE
Confidence            543221110000       00   000    000111 12455666666554431                   245778


Q ss_pred             EECCCCeeeEEEeccCCCee-----------EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE
Q 010883          261 YDLEANKLSLRILAHTSDVN-----------TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG  317 (498)
Q Consensus       261 wd~~~~~~~~~~~~~~~~v~-----------~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  317 (498)
                      .|+.+++..-.+......+.           .+.........++.++.+|.+.++|..    +++++.
T Consensus       275 ld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~----tG~~i~  338 (560)
T d1kv9a2         275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT----NGKLIS  338 (560)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT----TCCEEE
T ss_pred             ecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecC----CCcccc
Confidence            89999998766653222221           122111112467788999999999987    555543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.55  E-value=0.034  Score=53.06  Aligned_cols=55  Identities=9%  Similarity=0.082  Sum_probs=41.9

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      |.|.-||+.+++.+.... +..++.+-..+..+.+++.|+.||.++-+|..++++.
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence            679999999999887764 3334444444556778888999999999999988765

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.53  E-value=0.032  Score=50.95  Aligned_cols=104  Identities=11%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             CCceeEEEEEeCCCCCeEEEEEC-CC----eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883          174 SLRWTVTDTSLSPDQRHLVYASM-SP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE  248 (498)
Q Consensus       174 ~~~~~v~~~~~sp~~~~l~~~s~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~  248 (498)
                      ++...+..+++||++++++.+-. .|    .|+++|+.+++..... +...                ....++|.+|++.
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~----------------~~~~~~W~~D~~~  184 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERV----------------KFSCMAWTHDGKG  184 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEE----------------CSCCEEECTTSSE
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cccc----------------cccceEEcCCCCE
Confidence            44455667789999999986532 33    7999999999864321 1100                1245889999998


Q ss_pred             EEEEeCC----------------CeEEEEECCCCeee--EEEeccC--CCeeEEEEeCCCCCEEEEe
Q 010883          249 LVAGSSD----------------DCIYVYDLEANKLS--LRILAHT--SDVNTVCFGDESGHLIYSG  295 (498)
Q Consensus       249 l~~g~~d----------------g~i~vwd~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~~l~s~  295 (498)
                      |+....+                ..|+.+.+.+....  ..+....  ..+..+..+ .++++++..
T Consensus       185 ~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s-~d~~~l~i~  250 (430)
T d1qfma1         185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLS  250 (430)
T ss_dssp             EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEE
T ss_pred             EEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeecc-CCcceeeEE
Confidence            7765432                25888888776432  2232222  234556665 677776543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.026  Score=47.54  Aligned_cols=234  Identities=9%  Similarity=-0.014  Sum_probs=128.3

Q ss_pred             CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCe
Q 010883          189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANK  267 (498)
Q Consensus       189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~  267 (498)
                      .+|+.+. .+.|+-.+++..............           .+...+..++|.+..+.|... ..++.|+..++....
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~-----------~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~   69 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLH-----------IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE   69 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEE-----------EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccc-----------cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC
Confidence            3455444 346777777654433222211111           122257789999877766655 456789999987765


Q ss_pred             eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-Cc
Q 010883          268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QA  346 (498)
Q Consensus       268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-g~  346 (498)
                      ....+......+.++++....+++..+-...+.|.+.++.    ..............+..+++.|...+++..... +.
T Consensus        70 ~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d----g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~  145 (263)
T d1npea_          70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN  145 (263)
T ss_dssp             CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred             cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC----CceEEEEecccccCCcEEEEecccCcEEEeecCCCC
Confidence            5444444446788899853445455565667899999985    222222233334678899999877666544322 23


Q ss_pred             EEEE--eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE-
Q 010883          347 IKLW--DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-  423 (498)
Q Consensus       347 i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-  423 (498)
                      .+|+  ++....                                 .......+-   .....    +++++.++.|+.. 
T Consensus       146 ~~I~r~~~dG~~---------------------------------~~~i~~~~~---~~P~g----laiD~~~~~lYw~d  185 (263)
T d1npea_         146 PKIETSHMDGTN---------------------------------RRILAQDNL---GLPNG----LTFDAFSSQLCWVD  185 (263)
T ss_dssp             CEEEEEETTSCC---------------------------------CEEEECTTC---SCEEE----EEEETTTTEEEEEE
T ss_pred             cEEEEecCCCCC---------------------------------ceeeeeecc---cccce----EEEeecCcEEEEEe
Confidence            3344  443211                                 011000110   11111    2333355566555 


Q ss_pred             ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883          424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG  480 (498)
Q Consensus       424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~  480 (498)
                      ...+.|...|+........+.+-. ...++++. ++.+.++-...+.|...|..++.
T Consensus       186 ~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         186 AGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             TTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCc
Confidence            456789999986655444444333 34578775 33344444466778877776554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.41  E-value=0.01  Score=56.44  Aligned_cols=55  Identities=7%  Similarity=0.136  Sum_probs=41.0

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      |.|.-||+.+++.+..... ..+..+-..+-.+.++++++.||.++-+|..++++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence            6788999999999887752 233333334446678888999999999999988764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.28  E-value=0.08  Score=50.15  Aligned_cols=329  Identities=12%  Similarity=0.098  Sum_probs=156.1

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCceecccc
Q 010883          144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESLAN  215 (498)
Q Consensus       144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~~~~~  215 (498)
                      ..++.++.|+.+.-.|..+|+.+............+. +.-.|  -+..+++++.      .|.|.-+|..+|+.+....
T Consensus       129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CcEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            3566777888888889999977665433222211111 11112  1233444332      4689999999999876554


Q ss_pred             ccccccCcccccc---------CCC------CceecE-EEEEEcCCCCEEEEEeC-------------------CCeEEE
Q 010883          216 VTEIHDGLDFSAA---------DDG------GYSFGI-FSLKFSTDGRELVAGSS-------------------DDCIYV  260 (498)
Q Consensus       216 ~~~~~~~~~~~~~---------~~~------~h~~~i-~~~~~s~~g~~l~~g~~-------------------dg~i~v  260 (498)
                      .........+...         ...      .....+ ...++.++...++.+..                   ...|.-
T Consensus       208 t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvA  287 (573)
T d1kb0a2         208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA  287 (573)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             eccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEE
Confidence            3321111110000         000      000111 12455565555544321                   235777


Q ss_pred             EECCCCeeeEEEeccCCC---------ee--EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc-----
Q 010883          261 YDLEANKLSLRILAHTSD---------VN--TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-----  324 (498)
Q Consensus       261 wd~~~~~~~~~~~~~~~~---------v~--~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----  324 (498)
                      .|+.+++...........         ..  .+.........++.++.+|.+.++|..    +++.+........     
T Consensus       288 ld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~----tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSSEEE
T ss_pred             ecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccc----cccccccccccccccccc
Confidence            888888876555422111         11  111111112467888899999999987    5554433221000     


Q ss_pred             ------------------------------cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC-cccccccce
Q 010883          325 ------------------------------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG-FRSYEWDYR  373 (498)
Q Consensus       325 ------------------------------~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~  373 (498)
                                                    .-..++++|+...++....+....++.............. .....+...
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                          0012467777777777766666555554432211110000 000000000


Q ss_pred             eecCCcCcccccCCCCceEEEEccCceeEEEEEEEe-----ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCC
Q 010883          374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF-----SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS  448 (498)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  448 (498)
                      ....   ......+....+..+....... ......     ....+..+.+|++|+.||.++.+|..+|+.+.+++...+
T Consensus       444 ~~~~---~~p~~~~~~G~l~AiD~~tGk~-~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~  519 (573)
T d1kb0a2         444 KFFN---AEPPKSKPFGRLLAWDPVAQKA-AWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (573)
T ss_dssp             EEEC---SSCCCSCCEEEEEEEETTTTEE-EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cccc---cCCCCCCCcccEEEeCCCCCce-EeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence            0000   0000000011122222111100 000100     112333678888999999999999999999988863221


Q ss_pred             Cee-eeEEcCCCC-eEEEEeC----------------CCcEEEecCCCCCC
Q 010883          449 PVR-DCSWHPSQP-MLVSSSW----------------DGDVVRWEFPGNGE  481 (498)
Q Consensus       449 ~v~-~l~~sp~~~-~l~s~~~----------------Dg~i~iw~~~~~~~  481 (498)
                      ..- -+.|..+|+ +++..+.                .+.|.+|.+....+
T Consensus       520 ~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~  570 (573)
T d1kb0a2         520 VVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR  570 (573)
T ss_dssp             CCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred             ccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence            111 144556887 4443332                13577777765543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.045  Score=45.97  Aligned_cols=191  Identities=9%  Similarity=0.020  Sum_probs=109.5

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceecccccccc
Q 010883          143 GSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEI  219 (498)
Q Consensus       143 g~~la~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~  219 (498)
                      |.+|+.+. .+.|+-.+++.....  ........+...+..++|.+..+.|..+. .++.|...++.++....+....  
T Consensus         1 ~~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~--   77 (263)
T d1npea_           1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--   77 (263)
T ss_dssp             CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--
T ss_pred             CCEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec--
Confidence            34555543 346777776543100  00001112223578899998877777664 4577888888765543332110  


Q ss_pred             ccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC
Q 010883          220 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD  298 (498)
Q Consensus       220 ~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  298 (498)
                                    ...+.++++..-+..|..+ ...+.|.+.++........+......+..+++.|..+.++.+-...
T Consensus        78 --------------~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~  143 (263)
T d1npea_          78 --------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR  143 (263)
T ss_dssp             --------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             --------------cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC
Confidence                          1157788888756666544 4567899999876654333333346788999975555555453333


Q ss_pred             CeEEEE--cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883          299 NLCKVW--DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK  354 (498)
Q Consensus       299 g~i~vw--d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  354 (498)
                      +..+|+  ++.    .................+++.+.++.|..+ ...+.|...|+..
T Consensus       144 ~~~~I~r~~~d----G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         144 DNPKIETSHMD----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             SSCEEEEEETT----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             CCcEEEEecCC----CCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence            333444  443    111222222233566889998877766554 4567888888865

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.14  E-value=0.024  Score=53.87  Aligned_cols=55  Identities=13%  Similarity=0.193  Sum_probs=41.4

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      |.|.-||+.+++.+...+.. .+...-..+-.+.++++++.||.++.+|..++++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            57889999999998887633 23332233446778888999999999999988765

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.14  E-value=0.088  Score=47.85  Aligned_cols=207  Identities=14%  Similarity=0.116  Sum_probs=108.3

Q ss_pred             CCCCceEEEEEcCCCCEEEEEE-CC----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC------
Q 010883          129 QTTSRAYVSQFSADGSLFVAGF-QA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------  197 (498)
Q Consensus       129 ~h~~~v~~~~~s~dg~~la~~~-~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d------  197 (498)
                      ++.-.+...++|||++++|.+- .+    ..|+++|+.+++.+...+...    ....++|++|++.|+....+      
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~----~~~~~~W~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV----KFSCMAWTHDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE----CSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc----cccceEEcCCCCEEEEEEeccccCcc
Confidence            3344455678999999988543 22    369999999997665433221    12468899999988876533      


Q ss_pred             ----------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CC--eEEEEE
Q 010883          198 ----------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DD--CIYVYD  262 (498)
Q Consensus       198 ----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg--~i~vwd  262 (498)
                                ..|..+.+.+............            .....+..+..++++++++....   +.  .+.+.|
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~------------d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d  265 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFP------------DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCT------------TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             cccccccCCcceEEEEECCCCccccccccccc------------cCCceEEeeeccCCcceeeEEeeccCCccEEEEEee
Confidence                      2577777776543222111110            01124667788999998775432   22  345556


Q ss_pred             CCCCee--------eEEEeccCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEE-eccccccEEEEE
Q 010883          263 LEANKL--------SLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFID  330 (498)
Q Consensus       263 ~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~  330 (498)
                      +.....        ...+........-+..  .++.+++...   .++.|...++....  ...... +..+...+..-.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Tn~~a~~~~L~~~~~~~~~--~~~w~~vi~~~~~~~~~~~  341 (430)
T d1qfma1         266 LQQESNGITGILKWVKLIDNFEGEYDYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPE--ESKWKVLVPEHEKDVLEWV  341 (430)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ETTEEEEEECTTCTTCEEEEEETTBCC--GGGCEEEECCCSSCEEEEE
T ss_pred             CCCcccccccccceeEeecccccceEEEec--CCceeecccCcccccceeEEecCCCCc--cccceEEecccCcceeeeE
Confidence            543211        1112222223332222  2233333332   23566666665221  111222 333444454433


Q ss_pred             EcCCCCEEEEEe-CCC--cEEEEeCCCC
Q 010883          331 SRGDGRYLISNG-KDQ--AIKLWDIRKM  355 (498)
Q Consensus       331 ~~~~~~~l~s~~-~dg--~i~iwd~~~~  355 (498)
                      +...+.+|+... .++  .|+++++...
T Consensus       342 ~~~~~~~lvl~~~~~~~~~l~v~~~~~~  369 (430)
T d1qfma1         342 ACVRSNFLVLCYLHDVKNTLQLHDLATG  369 (430)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEECCEEEEEEEcCCEeEEEEEECCCC
Confidence            443445665544 444  4788888763

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.057  Score=45.43  Aligned_cols=188  Identities=11%  Similarity=-0.028  Sum_probs=108.9

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCc
Q 010883          145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGL  223 (498)
Q Consensus       145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (498)
                      +|+.+.. ..|+-.++++..... ..  .+ ...+..++|.+..+.|..+. ..+.|.-.++............. ..  
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~-~~--~~-~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-~~--   74 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTS-LI--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SR--   74 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEE-EE--CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CS--
T ss_pred             EEEEECC-CeEEEEECCCCccee-ee--CC-CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-eC--
Confidence            3444433 358888998753222 21  22 22577899999888777665 35567666665322111100000 00  


Q ss_pred             cccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCeE
Q 010883          224 DFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLC  301 (498)
Q Consensus       224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i  301 (498)
                               .-..+..+++.+.+..|... ...+.|.+.++........+.........+++.|..+.++.+.. ..+.|
T Consensus        75 ---------~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I  145 (266)
T d1ijqa1          75 ---------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (266)
T ss_dssp             ---------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             ---------CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcce
Confidence                     01145678888766655555 45678999999877655555555667899999855555555432 33456


Q ss_pred             EEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883          302 KVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK  354 (498)
Q Consensus       302 ~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  354 (498)
                      .-.++.     +.....+ .........+++.+.++.|..+ ...+.|...++..
T Consensus       146 ~r~~~d-----Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         146 KKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             EEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eEeccC-----CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            666663     3333333 2334567899999877766655 5567888888765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.68  E-value=0.27  Score=46.40  Aligned_cols=56  Identities=20%  Similarity=0.194  Sum_probs=43.6

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883          426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA  482 (498)
Q Consensus       426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~  482 (498)
                      .|.|.-+|+.+|+.+.....+ .++..-..+..+.++++++.||.++-+|..++++.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            367999999999998887643 34444344557778888999999999999988765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.2  Score=41.92  Aligned_cols=196  Identities=10%  Similarity=0.098  Sum_probs=124.2

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE
Q 010883          239 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV  318 (498)
Q Consensus       239 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  318 (498)
                      +.-.+|..+.||.-+ ...+.++|+++.+.+..+. ...+|.--.|.  +.+.|+..+ +..|+-|++..   ...+...
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g---~s~P~k~  138 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKM  138 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEES--SSSEEEEEC-SSEEEEEESSS---SCCCEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEec--CCCEEEEEc-CCceEEEcccC---CCCchhh
Confidence            456778888777766 5689999999998877764 44577777885  445565554 45899999952   2356666


Q ss_pred             ecccc----ccEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883          319 LMGHL----EGITFIDSRGDGRYLISNG-------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP  387 (498)
Q Consensus       319 ~~~~~----~~v~~l~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (498)
                      +..|.    ..|..-..+++.++++..+       -.|.+.+|..+.                                 
T Consensus       139 fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er---------------------------------  185 (327)
T d1utca2         139 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---------------------------------  185 (327)
T ss_dssp             EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---------------------------------
T ss_pred             hhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc---------------------------------
Confidence            66554    3577778889999877543       136788888876                                 


Q ss_pred             CCceEEEEccCceeEEEEEEEeccccCCC-CcEEEEEe---cCCeEEEEECCCCc--------EEEEec----cCCCCee
Q 010883          388 CDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGS---HDSCVYVYDLVSGE--------QVAALK----YHTSPVR  451 (498)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~---~dg~i~iwd~~~~~--------~~~~~~----~h~~~v~  451 (498)
                        +.-..+++|...-...  .  ..-.++ ..+++.+.   ..+.++|.++....        ....+.    .-.+-..
T Consensus       186 --~~sQ~ieGhaa~F~~~--~--~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPv  259 (327)
T d1utca2         186 --KVSQPIEGHAASFAQF--K--MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  259 (327)
T ss_dssp             --TEEEEECCSEEEEEEE--C--CTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEE
T ss_pred             --CcCccccceeeeeEEE--E--cCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEE
Confidence              4444555554211111  0  000011 12333322   23678898886521        111221    1234456


Q ss_pred             eeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          452 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       452 ~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      ++..++....+..-+.-|.|++||+.++..
T Consensus       260 amqvs~kygiiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         260 AMQISEKHDVVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEeeccCCEEEEEecCcEEEEEEcccccE
Confidence            788888888888899999999999988753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.21  Score=41.79  Aligned_cols=229  Identities=9%  Similarity=0.014  Sum_probs=124.0

Q ss_pred             eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe-
Q 010883          190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK-  267 (498)
Q Consensus       190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~-  267 (498)
                      +|+.+.. ..|+..++.+.....+...                 ...+..+.|.+..+.|.-.. ..+.|.-.++.... 
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~~-----------------~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~   64 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG   64 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-----------------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeCC-----------------CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC
Confidence            3444443 4588888877654333210                 11467899998777666654 46667777665322 


Q ss_pred             ---eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe--
Q 010883          268 ---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--  342 (498)
Q Consensus       268 ---~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--  342 (498)
                         ....+......+..+++-...+++..+-...+.|.+.++.    .................++++|...+|....  
T Consensus        65 ~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~----g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~  140 (266)
T d1ijqa1          65 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  140 (266)
T ss_dssp             ---CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             CcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC----CceEEEEEcCCCCCcceEEEEcccCeEEEeccC
Confidence               1122223335567788853455555565677899999986    3333333444456678899998655555433  


Q ss_pred             CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883          343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT  422 (498)
Q Consensus       343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  422 (498)
                      ..+.|...++...                                   ....+-... ......+    ++++.++.|+.
T Consensus       141 ~~~~I~r~~~dGs-----------------------------------~~~~l~~~~-~~~p~gl----~iD~~~~~lYw  180 (266)
T d1ijqa1         141 TPAKIKKGGLNGV-----------------------------------DIYSLVTEN-IQWPNGI----TLDLLSGRLYW  180 (266)
T ss_dssp             SSCEEEEEETTSC-----------------------------------CEEEEECSS-CSCEEEE----EEETTTTEEEE
T ss_pred             CCcceeEeccCCC-----------------------------------ceecccccc-cceeeEE----EeeccccEEEE
Confidence            2334555555431                                   111111111 0111122    33334555555


Q ss_pred             E-ecCCeEEEEECCCCcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883          423 G-SHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE  481 (498)
Q Consensus       423 g-~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~  481 (498)
                      + ...+.|...++..........  .......++++. .+.+.++-..++.|...+..++..
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcc
Confidence            5 556889999986654333332  222345677776 334444545677887777665543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.26  E-value=0.49  Score=44.56  Aligned_cols=52  Identities=17%  Similarity=0.335  Sum_probs=37.1

Q ss_pred             CCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCC-eeeeEEcCCCC-eEEEE
Q 010883          414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP-VRDCSWHPSQP-MLVSS  465 (498)
Q Consensus       414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~-~l~s~  465 (498)
                      +..+.+|++|+.||.++.+|..+|+.+.+++..... -.-+.|..+|+ +++..
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            346778889999999999999999999888732211 11246667887 55443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.81  E-value=0.51  Score=40.87  Aligned_cols=190  Identities=11%  Similarity=0.058  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCEEEEEEC------------CCeEEEEECCCCeEEEEEeecCC-----CceeEEEEEe--CCCCCe-EEEE
Q 010883          135 YVSQFSADGSLFVAGFQ------------ASQIRIYDVERGWKIQKDILAKS-----LRWTVTDTSL--SPDQRH-LVYA  194 (498)
Q Consensus       135 ~~~~~s~dg~~la~~~~------------dg~i~vw~~~~~~~~~~~~~~~~-----~~~~v~~~~~--sp~~~~-l~~~  194 (498)
                      -.++..|||..+++++.            .|.|.++|+.+...........+     .......+.+  .++++. |++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35788899977766542            48899999876532222211111     1112233332  456653 3333


Q ss_pred             E---CCCeEEEEECCCCce--eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---------------
Q 010883          195 S---MSPIVHIVDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------------  254 (498)
Q Consensus       195 s---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---------------  254 (498)
                      .   ...+|.+|++.....  ........             ......+++++..+|.++++-..               
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~-------------~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~  184 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRH-------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG  184 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECC-------------TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTT
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCC-------------ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhc
Confidence            2   345788877654321  11111111             11125788899889987777311               


Q ss_pred             CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883          255 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG  333 (498)
Q Consensus       255 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  333 (498)
                      -+...+|....++. ......-...+.|+++ ++++ ++++-+..+.|++|++.... ........ .-....-.+.+.+
T Consensus       185 ~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s-~d~~~lyVa~t~~~~i~~y~~~~~~-~l~~~~~~-~l~~~pDNi~~d~  260 (340)
T d1v04a_         185 LAWSFVTYYSPNDV-RVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANW-TLTPLRVL-SFDTLVDNISVDP  260 (340)
T ss_dssp             CCCEEEEEECSSCE-EEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEE-ECSSEEEEEEECT
T ss_pred             CCceeEEEEcCCce-EEEcCCCCccceeEEC-CCCCEEEEEeCCCCeEEEEEeCCCc-ccceEEEe-cCCCCCCccEEec
Confidence            12233444444433 2232334567999998 5555 44555677899999986211 11111111 1234456677765


Q ss_pred             -CCCEEEEE
Q 010883          334 -DGRYLISN  341 (498)
Q Consensus       334 -~~~~l~s~  341 (498)
                       +|.+.+++
T Consensus       261 ~~g~lwva~  269 (340)
T d1v04a_         261 VTGDLWVGC  269 (340)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCEEEEEE
Confidence             44444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.62  E-value=0.6  Score=40.39  Aligned_cols=147  Identities=11%  Similarity=0.147  Sum_probs=83.2

Q ss_pred             CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEE------EEcCCCCEEEEEeCC----C
Q 010883          187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL------KFSTDGRELVAGSSD----D  256 (498)
Q Consensus       187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~------~~s~~g~~l~~g~~d----g  256 (498)
                      +..+++.....+-|.+||+.. +.+......                  .+..+      .+......+++++..    .
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G-~~l~~~~~G------------------r~NNVDvr~~~~l~~~~~di~vasnR~~~~~   99 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEG-KMLHSYHTG------------------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKN   99 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTC-CEEEECCSS------------------CEEEEEEEEEEEETTEEEEEEEEEECCTTTC
T ss_pred             CccEEEEEcCcCCEEEEcCCC-cEEEecccC------------------CcCccccccccccCCcceEEEEEeCCcCcce
Confidence            456666666676799999974 443333221                  22322      232223335555521    3


Q ss_pred             eEEEEECCC-CeeeEEEec-------cCCCeeEEEE--eCCCCC-EEEEeeCCCeEEEEcCcccc---CCCceeEEeccc
Q 010883          257 CIYVYDLEA-NKLSLRILA-------HTSDVNTVCF--GDESGH-LIYSGSDDNLCKVWDRRCLN---VKGKPAGVLMGH  322 (498)
Q Consensus       257 ~i~vwd~~~-~~~~~~~~~-------~~~~v~~~~~--~~~~~~-~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~  322 (498)
                      .|.+|.+.. ...+..+..       ....+..+|+  ++.++. ++++...+|.+..|.+....   .....+..+. -
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-C
Confidence            677887743 222222221       1124566666  444554 56677788999988774221   1123344443 3


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883          323 LEGITFIDSRGDGRYLISNGKDQAIKLWDIR  353 (498)
Q Consensus       323 ~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  353 (498)
                      ...+..|.+.+....|+.+-.+.-|..++..
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEec
Confidence            4568899999988899999887666555544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.49  Score=39.59  Aligned_cols=64  Identities=14%  Similarity=0.072  Sum_probs=34.5

Q ss_pred             CCcEEEEEecC-----CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCc-----EEEecCCCC
Q 010883          416 GQKYIYTGSHD-----SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD-----VVRWEFPGN  479 (498)
Q Consensus       416 ~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~-----i~iw~~~~~  479 (498)
                      ++++++.|+.+     ..+.++|..+.+....-..........+...++++++.|+.++.     |.+||+..+
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence            35555555543     35678887766543322211122222222336788888876553     677887764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.33  E-value=1.4  Score=37.96  Aligned_cols=197  Identities=12%  Similarity=0.148  Sum_probs=106.5

Q ss_pred             cCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC------CCCCeEEEEEC--C--CeEEEEECCCC-
Q 010883          140 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS------PDQRHLVYASM--S--PIVHIVDVGSG-  208 (498)
Q Consensus       140 s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s------p~~~~l~~~s~--d--~~i~iwd~~~~-  208 (498)
                      .|+.++++...+.+-|.+||++ |+.+....  .   +.++.+..-      ....-|++++.  +  ..|.+|.+... 
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~---Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~  110 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--T---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN  110 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETT-CCEEEECC--S---SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT
T ss_pred             CcCccEEEEEcCcCCEEEEcCC-CcEEEecc--c---CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc
Confidence            3456777777777779999996 65555432  1   244444432      22334555553  2  36888887532 


Q ss_pred             -ceeccccccccccCccccccCCCCceecEEEEEE--cCC-CC-EEEEEeCCCeEEEEECC---CCe----eeEEEeccC
Q 010883          209 -TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE---ANK----LSLRILAHT  276 (498)
Q Consensus       209 -~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--s~~-g~-~l~~g~~dg~i~vwd~~---~~~----~~~~~~~~~  276 (498)
                       ............     ..     -...+..+++  ++. |. ++++...+|.+..|.+.   .+.    .++.+ .-.
T Consensus       111 ~~l~~~~~~~~p~-----~~-----~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~  179 (353)
T d1h6la_         111 GTLQSITDPNRPI-----AS-----AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMN  179 (353)
T ss_dssp             TEEEECSCSSSCE-----EC-----SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECS
T ss_pred             ccccccccccccc-----cc-----ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCC
Confidence             111111100000     00     0013455555  664 54 45666778998888763   232    33333 345


Q ss_pred             CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEecc--ccccEEEEEEc--CC--CCEEEEEeCCCcEEE
Q 010883          277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMG--HLEGITFIDSR--GD--GRYLISNGKDQAIKL  349 (498)
Q Consensus       277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~--~~~~v~~l~~~--~~--~~~l~s~~~dg~i~i  349 (498)
                      ..+..+.+. +....|+.+-.+.-|..++........ ..+....+  ....+..|+.-  ++  |-+|++.-.+.+..+
T Consensus       180 ~q~EGCVvD-de~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         180 SQTEGMAAD-DEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SCEEEEEEE-TTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CccceEEEe-CCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            678888885 677788888888777666654222122 22222211  34566777643  23  334445456788999


Q ss_pred             EeCCC
Q 010883          350 WDIRK  354 (498)
Q Consensus       350 wd~~~  354 (498)
                      ||...
T Consensus       259 ydr~~  263 (353)
T d1h6la_         259 YERQG  263 (353)
T ss_dssp             EESST
T ss_pred             EecCC
Confidence            99876

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=1.5  Score=36.25  Aligned_cols=59  Identities=8%  Similarity=-0.017  Sum_probs=30.9

Q ss_pred             eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---------CCeEEEEECCCCceecccc
Q 010883          154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIVDVGSGTMESLAN  215 (498)
Q Consensus       154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---------d~~i~iwd~~~~~~~~~~~  215 (498)
                      .+.+||..++. ..........+..-..+.+  +++.++.|+.         -..+.+||..+.+......
T Consensus        20 ~~~~yd~~t~~-W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~   87 (288)
T d1zgka1          20 YLEAYNPSNGT-WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP   87 (288)
T ss_dssp             CEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC
T ss_pred             eEEEEECCCCe-EEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccccccccccc
Confidence            57899999873 2222112211212222222  5666666553         2357788888776655443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.39  E-value=2  Score=37.36  Aligned_cols=107  Identities=16%  Similarity=0.153  Sum_probs=66.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883          236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW  304 (498)
Q Consensus       236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vw  304 (498)
                      ...-++.++...++++|+.++ +.|..+..           .......  .-..|..++|+ .+  .|+.. .++.+..+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs-~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFH-GD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEE-TT--EEEEE-ESSEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEee-CC--EEEEE-eCCCEEEE
Confidence            355678888777888888775 66765321           1111111  22368889997 33  44444 45677778


Q ss_pred             cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883          305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM  355 (498)
Q Consensus       305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  355 (498)
                      +..    ..........-..++..+.++|.  .++....++.+.++++...
T Consensus       111 ~~~----~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~  155 (381)
T d1xipa_         111 DLE----ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK  155 (381)
T ss_dssp             ESS----STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC
T ss_pred             Eee----ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccC
Confidence            775    22223333333466788888775  5666777889999998874

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.43  E-value=1.9  Score=37.55  Aligned_cols=102  Identities=12%  Similarity=0.078  Sum_probs=61.8

Q ss_pred             ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883          133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES  212 (498)
Q Consensus       133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~  212 (498)
                      .|..++|+.|  .|+.. .++.+..++...-........   ...++..+.++|.  .++....++.+.++++..+....
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~---~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~  159 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTS---FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ  159 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEE---CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeecccccccccc---ccccccceecCCc--eeEEEecCCCEEEEEeccCcccc
Confidence            5888999755  45555 445678888765322222211   2236788888875  45666778999999998876433


Q ss_pred             cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883          213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS  253 (498)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~  253 (498)
                      ......   ...        -...+.+++|++.|..++++.
T Consensus       160 ~~~~v~---~~~--------~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         160 LAQNVT---SFD--------VTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEESEE---EEE--------ECSSEEEEEETTSCEEEEEEE
T ss_pred             ccCCcc---eEE--------ecCCceEEEEeCCcEEEEEeC
Confidence            221000   000        012577888888887777764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.48  E-value=1.7  Score=39.05  Aligned_cols=56  Identities=11%  Similarity=0.100  Sum_probs=39.1

Q ss_pred             CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-----CCCceeEEEEEeCCC
Q 010883          132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPD  187 (498)
Q Consensus       132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~  187 (498)
                      ..-++|+|.|||++|++--..|.|++++..++.........     ..-+.....|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45679999999998887755799999998776433222111     122346889999995

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.37  E-value=9.4  Score=33.95  Aligned_cols=60  Identities=18%  Similarity=0.274  Sum_probs=40.8

Q ss_pred             eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC
Q 010883          178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD  245 (498)
Q Consensus       178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  245 (498)
                      ...+|+|.||+++|++--..|.|++++..++.......+......        ..-......|+|+|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~--------~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND--------ADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC--------TTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccc--------cCCCCceeeEEeCCC
Confidence            577999999999887765579999999888766544443321110        011236889999984

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.77  E-value=11  Score=32.09  Aligned_cols=139  Identities=13%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             cCCCC-EEEEEE---CCCeEEEEECCCC--eEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---------------CC
Q 010883          140 SADGS-LFVAGF---QASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------------SP  198 (498)
Q Consensus       140 s~dg~-~la~~~---~dg~i~vw~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---------------d~  198 (498)
                      .+||+ +|++..   ...+|.+|++..+  ................+++++..++.+++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            56676 344432   4567888887543  222222223333446889999899988877311               12


Q ss_pred             eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEE--ecc
Q 010883          199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRI--LAH  275 (498)
Q Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~--~~~  275 (498)
                      ...+|....++......                 .-...+.++++||+++|+++. ..+.|++|++.........  ..-
T Consensus       187 ~g~v~~~~~~~~~~~~~-----------------~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l  249 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAE-----------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF  249 (340)
T ss_dssp             CEEEEEECSSCEEEEEE-----------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC
T ss_pred             ceeEEEEcCCceEEEcC-----------------CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC
Confidence            33444444443322111                 011578899999998776654 5678999998755432221  123


Q ss_pred             CCCeeEEEEeCCCCCEEEEe
Q 010883          276 TSDVNTVCFGDESGHLIYSG  295 (498)
Q Consensus       276 ~~~v~~~~~~~~~~~~l~s~  295 (498)
                      ....-.+.+.+.++.+.+.+
T Consensus       250 ~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         250 DTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEEECTTTCCEEEEE
T ss_pred             CCCCCccEEecCCCEEEEEE
Confidence            34456677743455555544