Citrus Sinensis ID: 010892


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MSDSPAPSSNSDPGSISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
ccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHEEHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccc
msdspapssnsdpgsisavdqtggrsrrstdgsqtllsesrhwRDVFWLGIFVIHLIGLGFLLSVlglnrfkktdrfnisrytnqkvetkgeltedywpiyAVAGGVGALLGWMWLLLlgspanqmLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGtagvvasdmddgGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIhdgrdsvsmphnplvKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIrskignnecLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLItgtcagawtytkwhdRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYIcyaedpllihRWDAEFFNQMSETLHQRLQYRSARAREVltnnrfdshtqeslsv
msdspapssnsdpgsisavdqtggrsrrstdgsqtllsesrHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFkktdrfnisrytnqkvetkgeltedyWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVltnnrfdshtqeslsv
MsdspapssnsdpgsISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYavaggvgallgwmwllllgSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRwwlllvlsvslFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTamlmgmvlvglamvvvESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
****************************************RHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQY************************
****P**************************************RDVFWLGIFVIHLIGLGFLLSVLGLNRFKKT************VETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSET*******************************
************************************LSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRF**********
************************************LSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSAR********************
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSDSPAPSSNSDPGSISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query498 2.2.26 [Sep-21-2011]
Q869R1555 CTL-like protein DDB_G027 yes no 0.843 0.756 0.280 5e-38
Q6CY85553 Protein PNS1 OS=Kluyverom yes no 0.634 0.571 0.247 2e-19
Q6BIV4513 Protein PNS1 OS=Debaryomy yes no 0.592 0.575 0.237 5e-19
Q4I8E9538 Protein PNS1 OS=Gibberell yes no 0.467 0.433 0.273 8e-19
Q75EG5553 Protein PNS1 OS=Ashbya go yes no 0.455 0.410 0.271 5e-17
Q5AB93518 Protein PNS1 OS=Candida a N/A no 0.463 0.445 0.267 1e-16
Q870V7554 Protein PNS1 OS=Neurospor N/A no 0.620 0.557 0.248 2e-16
Q6C938571 Protein PNS1 OS=Yarrowia yes no 0.642 0.560 0.249 3e-16
Q55CN8506 CTL-like protein DDB_G026 no no 0.596 0.586 0.219 3e-16
Q4PIP8602 Protein PNS1 OS=Ustilago N/A no 0.455 0.377 0.261 5e-16
>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1 Back     alignment and function desciption
 Score =  159 bits (402), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 224/457 (49%), Gaps = 37/457 (8%)

Query: 29  STDGSQTLLSESRHWRDVFWLGIFVIHLIGLGF-LLSVLGLNRFKKTDR--FNISRYTNQ 85
           S +  +T  +  + ++D+ W  I    L GL F LL V+  + F KT    ++ + Y N 
Sbjct: 122 SYNEGETKFAPPK-YQDI-WFSI----LFGLNFGLLIVVSASAFAKTPYTYYDSNYYDNT 175

Query: 86  KVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLC 145
              + G L    + I         L  W WL L  + A  ++K S      +   + ++ 
Sbjct: 176 SGGSFGFL----FAILPFTIVFSLLYIWAWLKLAANHAESLIKYS------FFGAMGLMI 225

Query: 146 FWCDQFF-WG-----VAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVA 199
            +C  FF WG     + FA  A    L+ IS   R+ FT  +L  AV ++   P V R  
Sbjct: 226 GYCVFFFVWGAIYLGIIFAIMAFFIILFYISCRSRIPFTATLLSNAVAIIKEYPSVIRAG 285

Query: 200 YVFMAVMLLWMGIWSFGTAGVVASDMDDGG-RWWLLLVLSVSLFWTGAVLCNTVHVIVSG 258
           YV + +  +W  +W  G+A    + +  G  +  + + L  +L+W   V+ NT+H  VSG
Sbjct: 286 YVSIFINFVWFIVW--GSAFARVNMVYTGAIQTCINIYLVFTLYWVFHVIKNTLHTTVSG 343

Query: 259 MVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKI 318
           ++       G + V MPHNP + S R A+TTS GSIC+GSL  + I TLR+  + +   I
Sbjct: 344 LLATWYFCSGPNGVGMPHNPTLGSARRALTTSFGSICFGSLIISLIETLRYLSQMM---I 400

Query: 319 GNNECLLCCVDFLFH----LVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVE 374
            N   ++  + ++F+    ++ ++V+FFN YA+  +A+YGK F  SA+  + +F++    
Sbjct: 401 NNRNVVVKIIGYIFNCILSMLSSIVQFFNTYAFTHVAIYGKSFCDSAKSTFTMFENRLGS 460

Query: 375 ALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVV 434
            ++  +  G  + +G +V  L+  +  GA     + D  V  G+ A+ +G +++   + V
Sbjct: 461 TIINDNFVGTTIAIGGLVASLLL-SILGALISIPF-DMSVYGGALALFIGYLVIITNLEV 518

Query: 435 VESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQR 471
           V S+  S+++CY  +P ++     + +   S T H R
Sbjct: 519 VYSSTISLFVCYVMEPEVLAHTKPQLYQLYSSTYHLR 555





Dictyostelium discoideum (taxid: 44689)
>sp|Q6CY85|PNS1_KLULA Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6BIV4|PNS1_DEBHA Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 Back     alignment and function description
>sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q75EG5|PNS1_ASHGO Protein PNS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q5AB93|PNS1_CANAL Protein PNS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q870V7|PNS1_NEUCR Protein PNS1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pns-1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C938|PNS1_YARLI Protein PNS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q55CN8|CTLHC_DICDI CTL-like protein DDB_G0269978 OS=Dictyostelium discoideum GN=DDB_G0269978 PE=3 SV=1 Back     alignment and function description
>sp|Q4PIP8|PNS1_USTMA Protein PNS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PNS1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
255576509497 Protein PNS1, putative [Ricinus communis 0.969 0.971 0.820 0.0
225423919504 PREDICTED: CTL-like protein DDB_G0274487 0.959 0.948 0.793 0.0
356574175493 PREDICTED: CTL-like protein DDB_G0274487 0.963 0.973 0.772 0.0
449434644502 PREDICTED: CTL-like protein DDB_G0274487 0.943 0.936 0.768 0.0
356498302459 PREDICTED: CTL-like protein DDB_G0274487 0.913 0.991 0.791 0.0
357488431486 Choline transporter-like protein 5-A [Me 0.965 0.989 0.757 0.0
356534376440 PREDICTED: CTL-like protein DDB_G0274487 0.883 1.0 0.802 0.0
297845612488 hypothetical protein ARALYDRAFT_313379 [ 0.973 0.993 0.755 0.0
15222609488 plasma-membrane choline transporter-like 0.973 0.993 0.757 0.0
42570212432 plasma-membrane choline transporter-like 0.857 0.988 0.752 1e-178
>gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/484 (82%), Positives = 433/484 (89%), Gaps = 1/484 (0%)

Query: 16  ISAVDQTGGRSRRSTDGSQTLLSE-SRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKT 74
           I+AVDQ   RS+RS    Q L  +  R W DVFWLGIF++HLIGLG  L++LGLNRFKK+
Sbjct: 14  IAAVDQNVRRSQRSDTAGQALAPDLPRRWHDVFWLGIFLLHLIGLGIALAILGLNRFKKS 73

Query: 75  DRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHIL 134
           DRF I R+T     +   LTEDYWP+YA+AGGVG +LGW WLLLLGS ANQM+KISVHIL
Sbjct: 74  DRFKIDRFTTGSSGSNRGLTEDYWPMYALAGGVGTVLGWTWLLLLGSRANQMMKISVHIL 133

Query: 135 TTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPE 194
           TTYLAVISVLCFWC+QFFWGVAFA  AALQFLYVISVI+RL FTMLVLQKAVKMVWSLPE
Sbjct: 134 TTYLAVISVLCFWCEQFFWGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWSLPE 193

Query: 195 VKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHV 254
           V RVAY FM VMLLWM IWSFG AGVVAS M++GGRWWLL+VLSVSLFWTGAVLCNTVHV
Sbjct: 194 VMRVAYAFMLVMLLWMAIWSFGAAGVVASSMENGGRWWLLVVLSVSLFWTGAVLCNTVHV 253

Query: 255 IVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI 314
           IVSGMVFLVLIHDGR++ SMP NPL+KSLRYAVTTS GSICYGSLFTAAIRTLRWEIRG+
Sbjct: 254 IVSGMVFLVLIHDGREAASMPPNPLLKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGL 313

Query: 315 RSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVE 374
           RSKIG NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGK FN SARDAWELFQSTGVE
Sbjct: 314 RSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNHSARDAWELFQSTGVE 373

Query: 375 ALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVV 434
           ALVAYDCSGAVLLMGT++ GLITGTC+G WT  KW+DRV+MVGSTAMLMGMVLVG+AMVV
Sbjct: 374 ALVAYDCSGAVLLMGTVLSGLITGTCSGVWTRIKWNDRVIMVGSTAMLMGMVLVGVAMVV 433

Query: 435 VESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQE 494
           VESAVTSIYICYAEDPLLIHRWDAEFFNQ+SETLHQRLQ+RSARAREV+++NRFD H +E
Sbjct: 434 VESAVTSIYICYAEDPLLIHRWDAEFFNQLSETLHQRLQHRSARAREVVSSNRFDIHIRE 493

Query: 495 SLSV 498
           S+ V
Sbjct: 494 SIPV 497




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] Back     alignment and taxonomy information
>gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|297845612|ref|XP_002890687.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] gi|297336529|gb|EFH66946.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222609|ref|NP_173921.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|12321513|gb|AAG50816.1|AC079281_18 unknown protein [Arabidopsis thaliana] gi|332192513|gb|AEE30634.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42570212|ref|NP_849707.2| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|332192512|gb|AEE30633.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
TAIR|locus:2031235488 AT1G25500 [Arabidopsis thalian 0.941 0.961 0.689 2.4e-170
DICTYBASE|DDB_G0274487555 DDB_G0274487 "Protein PNS1" [D 0.829 0.744 0.258 1.2e-33
TAIR|locus:2177110569 AT5G13760 "AT5G13760" [Arabido 0.620 0.543 0.266 1.4e-26
TAIR|locus:2079444482 AT3G03700 [Arabidopsis thalian 0.690 0.713 0.228 3.6e-15
TAIR|locus:2100865482 AT3G04440 [Arabidopsis thalian 0.690 0.713 0.228 3.6e-15
DICTYBASE|DDB_G0269978506 DDB_G0269978 [Dictyostelium di 0.542 0.533 0.229 1.1e-14
CGD|CAL0005194518 orf19.6077 [Candida albicans ( 0.271 0.260 0.333 1.5e-14
UNIPROTKB|Q5AB93518 PNS1 "Protein PNS1" [Candida a 0.271 0.260 0.333 1.5e-14
ASPGD|ASPL0000039512533 AN10377 [Emericella nidulans ( 0.459 0.429 0.274 2.2e-14
SGD|S000005687539 PNS1 "Protein of unknown funct 0.271 0.250 0.321 7.7e-13
TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1656 (588.0 bits), Expect = 2.4e-170, P = 2.4e-170
 Identities = 324/470 (68%), Positives = 363/470 (77%)

Query:    16 ISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTD 75
             IS+ DQ+  RSRRS DG++ ++ ESRHW DVFW  IFVIHLI LGF+L+VLGLNRF+ +D
Sbjct:    17 ISSGDQSLQRSRRSGDGNRAVVRESRHWHDVFWSAIFVIHLICLGFVLAVLGLNRFRISD 76

Query:    76 RFNISRYTNQKVETKGELTEDYWPIYXXXXXXXXXXXXXXXXXXXSPANQMLKISVHILT 135
             R NI RYT   +E    LTEDYWP+Y                   S AN+M+K+SVHILT
Sbjct:    77 RLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILT 136

Query:   136 TYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEV 195
             TYLAV+SVLCFWC  FFWG AFA  + LQFLYVISVIDRL FTMLVL+KA+K+VW LP+V
Sbjct:   137 TYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLPKV 196

Query:   196 KRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRXXXXXXXXXXXFWTGAVLCNTVHVI 255
               VA+ F  VMLLWM +WSFG AGVVAS M D GR           FWTGAVLCNTVHVI
Sbjct:   197 IMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVHVI 256

Query:   256 VSGMVFLVLIHDGRD-SVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI 314
             VSGMVF VL H G++ S S+P + LV SLRYAVTTS GSICYGSLFTAAIRTLRWEIRG 
Sbjct:   257 VSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGF 316

Query:   315 RSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVE 374
             RSKI  NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFN+SARDAWELFQSTGVE
Sbjct:   317 RSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQSTGVE 376

Query:   375 ALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTXXXXXXXXXXXXXXX 434
             ALVAYDCSGAVLLMGTI GGLITG+C G W + K+ DRV+MV ST               
Sbjct:   377 ALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSDRVIMVASTAMLMGMVLVGLGMVV 436

Query:   435 XESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLT 484
              ESAVTSIYIC+AEDPLLI RWDA+F+ +MSE LH+RLQ+RS+RAREVLT
Sbjct:   437 VESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLHRRLQHRSSRAREVLT 486




GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
pfam04515327 pfam04515, Choline_transpo, Plasma-membrane cholin 1e-79
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter Back     alignment and domain information
 Score =  250 bits (642), Expect = 1e-79
 Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 25/329 (7%)

Query: 152 FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 211
              + F     +  L +I +  R+   + +L+ A   V   P +  V  +    +  ++ 
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 212 IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 256
           +W      +  S     ++GG               LL+ L   LFWT  V+    HV +
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120

Query: 257 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 316
           +G+V            +MP  P + S + A+T S GSIC+GSL  A I+ +R  +  +R 
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178

Query: 317 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 371
           K+  ++      LLCC+      +E  V + N+ AYV IA+YGKGF  SA+D WEL +  
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238

Query: 372 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 428
           G+ ALV     G VL +G +    +TG  A  W     +  +    +  + A L+  ++ 
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298

Query: 429 GLAMVVVESAVTSIYICYAEDPLLIHRWD 457
            + M V ES V +I++C+AEDP L+    
Sbjct: 299 SVFMSVYESGVDTIFVCFAEDPELLRNDG 327


This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 498
KOG1362577 consensus Choline transporter-like protein [Lipid 100.0
PF04515334 Choline_transpo: Plasma-membrane choline transport 100.0
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=3.8e-68  Score=569.09  Aligned_cols=383  Identities=30%  Similarity=0.466  Sum_probs=326.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-------h-----------------h-
Q 010892           96 DYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWC-------D-----------------Q-  150 (498)
Q Consensus        96 ~~~~ll~~~~~va~vls~~~l~llr~~~~~li~~~~~~~~~~~~~~~~~~~~~-------~-----------------~-  150 (498)
                      .+|+.+...++++.+++.+++.++|.+++.++|..+.++.+.+....-.+++.       +                 . 
T Consensus       147 ~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~  226 (577)
T KOG1362|consen  147 RSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTL  226 (577)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHH
Confidence            67888888999999999999999999999999988654433333333222221       0                 0 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccccccc-----
Q 010892          151 -FFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD-----  224 (498)
Q Consensus       151 -~~~gIv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~~~~~il~~~~~~~w~~~~~g~~~~~-----  224 (498)
                       ...||+++++.++.+++.+.+|+||+++++++|+++|++.+.|++.+.|+.+.++..+|.++|+.+..+....+     
T Consensus       227 l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~g  306 (577)
T KOG1362|consen  227 LDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEG  306 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence             13689999999999999999999999999999999999999999999999999999999999998765544443     


Q ss_pred             -----cCCCchhHHHHHHHHH-HHHHHHHHhhccccceeceEEEEeeccCCCCCCCCCchHHHHHHHHHhhcchhhhhhH
Q 010892          225 -----MDDGGRWWLLLVLSVS-LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGS  298 (498)
Q Consensus       225 -----~~~~~~~~l~~~~~f~-~~Wt~~vi~~v~~~tvAg~v~~WYF~~~~~~~~~p~~~v~~s~~ra~t~sfGSIcfGS  298 (498)
                           .++++...+..++++. ++|++||++|++|+++||++++|||++++  +++|..|+..|++|+++||+||+|+||
T Consensus       307 g~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GS  384 (577)
T KOG1362|consen  307 GCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGS  384 (577)
T ss_pred             CceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhh
Confidence                 1222222223333333 99999999999999999999999999986  689999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhccCC--c---hhhHHHHHHHHHHHHHHHHHhchhHHHHHHhcCCchhHhHHHHHHHHHhccc
Q 010892          299 LFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGV  373 (498)
Q Consensus       299 LIvaii~~lR~ll~~l~~~~~~--~---~~l~c~~~c~l~~~e~~i~~~N~~Ayi~iAi~G~~f~~Sak~~~~L~~~~g~  373 (498)
                      |++++++++|.++|++|++.++  |   +|++||+.||+||+|++++++|||||+++|||||+||+||||||+|+++| +
T Consensus       385 liv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v  463 (577)
T KOG1362|consen  385 LLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-V  463 (577)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-H
Confidence            9999999999999999998864  3   58999999999999999999999999999999999999999999999999 7


Q ss_pred             hhhhhhhhhhHHHHHHHHHhHHHHhhhhhHhhhhhcCC--chhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccc
Q 010892          374 EALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVESAVTSIYICYAEDP  450 (498)
Q Consensus       374 ~ali~~~lig~~l~lg~l~v~~l~~l~~~~~~~~~~~~--~~~~~~~~~f~ig-~~i~~~f~~v~~s~vdTifvcf~eDp  450 (498)
                      .++++.|.+|++++++..+.+.+++.+++++.+..+++  .++.+.+.++++| |+|+++|+++++|+|||+|+||+|||
T Consensus       464 ~~vv~~d~vs~~llflgk~l~~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD~  543 (577)
T KOG1362|consen  464 LRVVDVDLVSDFLLFLGKLLGAIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDP  543 (577)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEecH
Confidence            88999999999988654455556666778877777777  6777888999999 99999999999999999999999999


Q ss_pred             hhhccCChhHHHHHHHHHHHHHHhchhhhhhhc
Q 010892          451 LLIHRWDAEFFNQMSETLHQRLQYRSARAREVL  483 (498)
Q Consensus       451 e~~~~~~p~~~~~m~~~~~~~~~~~~~~~~~~~  483 (498)
                      |.+|++ ||++++|.+.+++.++++++ .++++
T Consensus       544 e~n~gs-~~~p~~~~~~l~~~~~~~~~-~~~~~  574 (577)
T KOG1362|consen  544 ESNDGS-PEKPQFMSEQLLEILGRSNK-APRVQ  574 (577)
T ss_pred             hhcCCC-CCcceeeeHHHHHhcccccc-cchhh
Confidence            999998 89999999999999987655 44333



>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00