Citrus Sinensis ID: 010908

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MAVYVISRRLLGGGSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
cHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHccccccccccc
cHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHcccEEEEEccEEEEEcccccccHHHHHHHHHccccccEccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHcccEcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccccccccccccccccHHHHHHHHHHHHHccccEEcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEccEcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcEEcHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHccHHHcccccc
MAVYVISRrllgggsttsqlaGTLRYGACwrsystsfreekdtfgpilvpsdklwgaqTQRSLqnfdiggerermpepIVRAFGILKKCAAKVnmeygldpAIGKAIMQAAQEVAegklndhfplvvwqtgsgtqsnmNANEVIANRAAEILghkrgekivhpndhvnrsqssndtfpTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGrthtqdatpltlgqefsgytTQVKYGIDRvicclprmyqlaqggtavgtglntkkgfDVKIASAVaeetslpfvtaENKFEALAAHDAFVETSGALNTVAASLMKIANDvrllgsgprcglgelilpenepgssimpgkvnptqcEALTMVCAQVIGNHVAitvggsnghfelnvfkPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVtslnpkigydNAAAVAKKAHKEGTTLKDAALKLGvlnseefdnlvvpekmigpsd
MAVYVISrrllgggsttsqlagtlrYGACWRSYSTSFREEKDTFGPILvpsdklwgaqTQRSLQnfdiggerermPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKivhpndhvnrsqssndTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRthtqdatpltlgqefsGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGvlnseefdnlvvpekmigpsd
MAVYVISRRLLGGGSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
**VYVISRRLLGGGSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGG****MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGS*********EVIANRAAEIL*************************PTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP************VNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLV**********
**************************************E*KDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG***
MAVYVISRRLLGGGSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
****V*SRRLLGGGSTTSQ************SYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG***
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MAVYVISRRLLGGGSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
P93033492 Fumarate hydratase 1, mit yes no 0.989 1.0 0.875 0.0
Q9FI53499 Fumarate hydratase 2, chl yes no 0.939 0.935 0.895 0.0
Q7SX99509 Fumarate hydratase, mitoc yes no 0.949 0.927 0.706 0.0
Q60HF9510 Fumarate hydratase, mitoc N/A no 0.925 0.901 0.718 0.0
P07954510 Fumarate hydratase, mitoc yes no 0.925 0.901 0.718 0.0
P14408507 Fumarate hydratase, mitoc yes no 0.925 0.907 0.713 0.0
P97807507 Fumarate hydratase, mitoc yes no 0.925 0.907 0.713 0.0
P55250494 Fumarate hydratase, mitoc N/A no 0.927 0.933 0.718 0.0
P10173466 Fumarate hydratase, mitoc yes no 0.925 0.987 0.715 0.0
O17214501 Probable fumarate hydrata yes no 0.941 0.934 0.677 0.0
>sp|P93033|FUM1_ARATH Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2 Back     alignment and function desciption
 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/497 (87%), Positives = 462/497 (92%), Gaps = 5/497 (1%)

Query: 1   MAVYVISRRLLGGGSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQ 60
           M++YV SRRL GG + T+     LRY    RSYSTSFREE+DTFGPI VPSDKLWGAQTQ
Sbjct: 1   MSIYVASRRLSGGTTVTA-----LRYATSLRSYSTSFREERDTFGPIQVPSDKLWGAQTQ 55

Query: 61  RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLN 120
           RSLQNF+IGGERERMPEPIVRAFG+LKKCAAKVNMEYGLDP IGKAIMQAAQEVAEGKLN
Sbjct: 56  RSLQNFEIGGERERMPEPIVRAFGVLKKCAAKVNMEYGLDPTIGKAIMQAAQEVAEGKLN 115

Query: 121 DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTV 180
           DHFPLVVWQTGSGTQSNMNANEVIANRAAEILG KRGEK VHPNDHVNRSQSSNDTFPTV
Sbjct: 116 DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGRKRGEKCVHPNDHVNRSQSSNDTFPTV 175

Query: 181 MHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ 240
           MHIAAA E NSRLIP+LK LH++L SKS EFKDIVKIGRTHTQDATPLTLGQEF GY TQ
Sbjct: 176 MHIAAATEINSRLIPSLKTLHSTLESKSFEFKDIVKIGRTHTQDATPLTLGQEFGGYATQ 235

Query: 241 VKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEA 300
           VKYG++RV C LPR+YQLAQGGTAVGTGLNTKKGFDVKIA+AVAEET+LPFVTAENKFEA
Sbjct: 236 VKYGLNRVTCTLPRLYQLAQGGTAVGTGLNTKKGFDVKIAAAVAEETNLPFVTAENKFEA 295

Query: 301 LAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNP 360
           LAAHDA VETSG+LNT+A SLMKIAND+R LGSGPRCGLGEL+LPENEPGSSIMPGKVNP
Sbjct: 296 LAAHDACVETSGSLNTIATSLMKIANDIRFLGSGPRCGLGELVLPENEPGSSIMPGKVNP 355

Query: 361 TQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNC 420
           TQCEALTMVCAQV+GNHVA+TVGGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNC
Sbjct: 356 TQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVIASALLHSVRLIADASASFEKNC 415

Query: 421 VRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNS 480
           VRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEG TLK+AAL LGVL +
Sbjct: 416 VRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTA 475

Query: 481 EEFDNLVVPEKMIGPSD 497
           EEFD LVVPEKMIGPSD
Sbjct: 476 EEFDTLVVPEKMIGPSD 492

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|Q9FI53|FUM2_ARATH Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1 Back     alignment and function description
>sp|Q7SX99|FUMH_DANRE Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1 Back     alignment and function description
>sp|Q60HF9|FUMH_MACFA Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1 Back     alignment and function description
>sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3 Back     alignment and function description
>sp|P14408|FUMH_RAT Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1 Back     alignment and function description
>sp|P97807|FUMH_MOUSE Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=3 Back     alignment and function description
>sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1 Back     alignment and function description
>sp|P10173|FUMH_PIG Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1 Back     alignment and function description
>sp|O17214|FUMH_CAEEL Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
224068388490 predicted protein [Populus trichocarpa] 0.985 1.0 0.899 0.0
356500262495 PREDICTED: fumarate hydratase 1, mitocho 0.995 1.0 0.891 0.0
449469056495 PREDICTED: fumarate hydratase 1, mitocho 0.987 0.991 0.887 0.0
225437455494 PREDICTED: fumarate hydratase 1, mitocho 0.993 1.0 0.897 0.0
297824853492 hypothetical protein ARALYDRAFT_483931 [ 0.989 1.0 0.881 0.0
356534969495 PREDICTED: fumarate hydratase 1, mitocho 0.995 1.0 0.885 0.0
15226618492 fumarate hydratase, class II [Arabidopsi 0.989 1.0 0.875 0.0
222423016492 AT2G47510 [Arabidopsis thaliana] 0.989 1.0 0.873 0.0
356500272465 PREDICTED: fumarate hydratase 2, chlorop 0.929 0.993 0.917 0.0
15241331499 fumarate hydratase 2 [Arabidopsis thalia 0.939 0.935 0.895 0.0
>gi|224068388|ref|XP_002302734.1| predicted protein [Populus trichocarpa] gi|222844460|gb|EEE82007.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/497 (89%), Positives = 469/497 (94%), Gaps = 7/497 (1%)

Query: 1   MAVYVISRRLLGGGSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQ 60
           MA+Y++SRRL  G +T        RYG   RSYST+FREE+DTFGPI VP+DKLWGAQTQ
Sbjct: 1   MAMYIVSRRLSTGSTT-------WRYGNWLRSYSTAFREERDTFGPISVPADKLWGAQTQ 53

Query: 61  RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLN 120
           RSLQNFDIGG+RERMPEPI+RAFGILKKCAAKVNM+YGLDP+IGKAIMQAA EVAEGKL+
Sbjct: 54  RSLQNFDIGGDRERMPEPIIRAFGILKKCAAKVNMQYGLDPSIGKAIMQAAHEVAEGKLS 113

Query: 121 DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTV 180
           DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK VHPNDHVNRSQSSNDTFPTV
Sbjct: 114 DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTV 173

Query: 181 MHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ 240
           MHIAAA E NSRLIP LK LH +LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ
Sbjct: 174 MHIAAATEINSRLIPKLKTLHLTLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ 233

Query: 241 VKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEA 300
           VKYGIDRV+C LP MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEET+LPFVTAENKFEA
Sbjct: 234 VKYGIDRVMCTLPHMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETNLPFVTAENKFEA 293

Query: 301 LAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNP 360
           LAAHDAFVETSGALNTVA SLMKIAND+RLLGSGPRCGLGELILPENEPGSSIMPGKVNP
Sbjct: 294 LAAHDAFVETSGALNTVATSLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNP 353

Query: 361 TQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNC 420
           TQCEALTMVCAQV+GNHVAITVGGSNGHFELNVFKPMIASGLLHS+RLLGDASASFEKNC
Sbjct: 354 TQCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPMIASGLLHSIRLLGDASASFEKNC 413

Query: 421 VRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNS 480
           VRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAK AHKEG+TLK+AALKLG+L S
Sbjct: 414 VRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKLAHKEGSTLKEAALKLGMLTS 473

Query: 481 EEFDNLVVPEKMIGPSD 497
           EEFD LVVPEKMIGP+D
Sbjct: 474 EEFDTLVVPEKMIGPTD 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356500262|ref|XP_003518952.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|449469056|ref|XP_004152237.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Cucumis sativus] gi|449484240|ref|XP_004156827.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225437455|ref|XP_002273033.1| PREDICTED: fumarate hydratase 1, mitochondrial [Vitis vinifera] gi|297743928|emb|CBI36898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297824853|ref|XP_002880309.1| hypothetical protein ARALYDRAFT_483931 [Arabidopsis lyrata subsp. lyrata] gi|297326148|gb|EFH56568.1| hypothetical protein ARALYDRAFT_483931 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356534969|ref|XP_003536023.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|15226618|ref|NP_182273.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|145331433|ref|NP_001078075.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|39931311|sp|P93033.2|FUM1_ARATH RecName: Full=Fumarate hydratase 1, mitochondrial; Short=Fumarase 1; Flags: Precursor gi|2443751|gb|AAB71399.1| fumarase [Arabidopsis thaliana] gi|2529676|gb|AAC62859.1| putative fumarase [Arabidopsis thaliana] gi|15809968|gb|AAL06911.1| At2g47510/T30B22.19 [Arabidopsis thaliana] gi|17064768|gb|AAL32538.1| putative fumarase [Arabidopsis thaliana] gi|28059023|gb|AAO29979.1| putative fumarase [Arabidopsis thaliana] gi|330255758|gb|AEC10852.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|330255759|gb|AEC10853.1| fumarate hydratase, class II [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423016|dbj|BAH19491.1| AT2G47510 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356500272|ref|XP_003518957.1| PREDICTED: fumarate hydratase 2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|15241331|ref|NP_199908.1| fumarate hydratase 2 [Arabidopsis thaliana] gi|39931631|sp|Q9FI53.1|FUM2_ARATH RecName: Full=Fumarate hydratase 2, chloroplastic; Short=Fumarase 2; Flags: Precursor gi|9758242|dbj|BAB08741.1| fumarate hydratase [Arabidopsis thaliana] gi|15529147|gb|AAK97668.1| AT5g50950/K3K7_11 [Arabidopsis thaliana] gi|21360525|gb|AAM47378.1| AT5g50950/K3K7_11 [Arabidopsis thaliana] gi|332008632|gb|AED96015.1| fumarate hydratase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:2061966492 FUM1 "fumarase 1" [Arabidopsis 0.989 1.0 0.875 5.7e-233
UNIPROTKB|Q5ZLD1507 FH "Uncharacterized protein" [ 0.955 0.936 0.715 3.9e-179
UNIPROTKB|P07954510 FH "Fumarate hydratase, mitoch 0.925 0.901 0.718 1.9e-177
UNIPROTKB|Q5M964507 Fh "Protein Fh1" [Rattus norve 0.925 0.907 0.713 6.5e-177
UNIPROTKB|Q148D3510 FH "Fumarate hydratase" [Bos t 0.925 0.901 0.720 1.4e-176
RGD|2614507 Fh "fumarate hydratase" [Rattu 0.925 0.907 0.713 1.4e-176
MGI|MGI:95530507 Fh1 "fumarate hydratase 1" [Mu 0.983 0.964 0.689 1.7e-176
UNIPROTKB|E2RGR9508 FH "Uncharacterized protein" [ 0.925 0.905 0.715 9.6e-176
ZFIN|ZDB-GENE-010724-6509 fh "fumarate hydratase" [Danio 0.949 0.927 0.706 9.6e-176
UNIPROTKB|P10173466 FH "Fumarate hydratase, mitoch 0.925 0.987 0.715 2e-175
TAIR|locus:2061966 FUM1 "fumarase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2247 (796.0 bits), Expect = 5.7e-233, P = 5.7e-233
 Identities = 435/497 (87%), Positives = 462/497 (92%)

Query:     1 MAVYVISRRLLGGGSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQ 60
             M++YV SRRL GG + T+     LRY    RSYSTSFREE+DTFGPI VPSDKLWGAQTQ
Sbjct:     1 MSIYVASRRLSGGTTVTA-----LRYATSLRSYSTSFREERDTFGPIQVPSDKLWGAQTQ 55

Query:    61 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLN 120
             RSLQNF+IGGERERMPEPIVRAFG+LKKCAAKVNMEYGLDP IGKAIMQAAQEVAEGKLN
Sbjct:    56 RSLQNFEIGGERERMPEPIVRAFGVLKKCAAKVNMEYGLDPTIGKAIMQAAQEVAEGKLN 115

Query:   121 DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTV 180
             DHFPLVVWQTGSGTQSNMNANEVIANRAAEILG KRGEK VHPNDHVNRSQSSNDTFPTV
Sbjct:   116 DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGRKRGEKCVHPNDHVNRSQSSNDTFPTV 175

Query:   181 MHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ 240
             MHIAAA E NSRLIP+LK LH++L SKS EFKDIVKIGRTHTQDATPLTLGQEF GY TQ
Sbjct:   176 MHIAAATEINSRLIPSLKTLHSTLESKSFEFKDIVKIGRTHTQDATPLTLGQEFGGYATQ 235

Query:   241 VKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEA 300
             VKYG++RV C LPR+YQLAQGGTAVGTGLNTKKGFDVKIA+AVAEET+LPFVTAENKFEA
Sbjct:   236 VKYGLNRVTCTLPRLYQLAQGGTAVGTGLNTKKGFDVKIAAAVAEETNLPFVTAENKFEA 295

Query:   301 LAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNP 360
             LAAHDA VETSG+LNT+A SLMKIAND+R LGSGPRCGLGEL+LPENEPGSSIMPGKVNP
Sbjct:   296 LAAHDACVETSGSLNTIATSLMKIANDIRFLGSGPRCGLGELVLPENEPGSSIMPGKVNP 355

Query:   361 TQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNC 420
             TQCEALTMVCAQV+GNHVA+TVGGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNC
Sbjct:   356 TQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVIASALLHSVRLIADASASFEKNC 415

Query:   421 VRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNS 480
             VRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEG TLK+AAL LGVL +
Sbjct:   416 VRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTA 475

Query:   481 EEFDNLVVPEKMIGPSD 497
             EEFD LVVPEKMIGPSD
Sbjct:   476 EEFDTLVVPEKMIGPSD 492
GO:0003824 "catalytic activity" evidence=IEA
GO:0004333 "fumarate hydratase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
GO:0006106 "fumarate metabolic process" evidence=IEA
GO:0016829 "lyase activity" evidence=IEA
GO:0045239 "tricarboxylic acid cycle enzyme complex" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0048868 "pollen tube development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
UNIPROTKB|Q5ZLD1 FH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P07954 FH "Fumarate hydratase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M964 Fh "Protein Fh1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q148D3 FH "Fumarate hydratase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|2614 Fh "fumarate hydratase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:95530 Fh1 "fumarate hydratase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGR9 FH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010724-6 fh "fumarate hydratase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P10173 FH "Fumarate hydratase, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O25883FUMC_HELPY4, ., 2, ., 1, ., 20.57260.91950.9870yesno
Q9ZCQ4FUMC_RICPR4, ., 2, ., 1, ., 20.62820.91750.9891yesno
Q8UEY7FUMC_AGRT54, ., 2, ., 1, ., 20.62850.92350.9913yesno
Q92PB6FUMC_RHIME4, ., 2, ., 1, ., 20.64220.92550.9935yesno
Q8FX90FUMC_BRUSU4, ., 2, ., 1, ., 20.63910.91750.9848yesno
Q8F9L0FUMC_LEPIN4, ., 2, ., 1, ., 20.63550.91950.9849yesno
P28894FUMC1_BRAJA4, ., 2, ., 1, ., 20.65210.91750.9640yesno
O17214FUMH_CAEEL4, ., 2, ., 1, ., 20.67780.94160.9341yesno
Q9FI53FUM2_ARATH4, ., 2, ., 1, ., 20.89500.93960.9358yesno
Q7W4N9FUMC_BORPA4, ., 2, ., 1, ., 20.62580.91140.9784yesno
P08417FUMH_YEAST4, ., 2, ., 1, ., 20.69210.94560.9631yesno
P05042FUMC_ECOLI4, ., 2, ., 1, ., 20.61170.91950.9785N/Ano
Q72VY3FUMC_LEPIC4, ., 2, ., 1, ., 20.63550.91950.9849yesno
Q8Z6R6FUMC_SALTI4, ., 2, ., 1, ., 20.60300.91950.9785N/Ano
Q8ZEB6FUMC_YERPE4, ., 2, ., 1, ., 20.59250.91540.9784yesno
Q4UMT4FUMC_RICFE4, ., 2, ., 1, ., 20.63550.91950.9913yesno
Q92GW0FUMC_RICCN4, ., 2, ., 1, ., 20.62410.92350.9913yesno
P71384FUMC_HAEIN4, ., 2, ., 1, ., 20.58780.92150.9870yesno
Q983U5FUMC_RHILO4, ., 2, ., 1, ., 20.63910.91750.9806yesno
P93033FUM1_ARATH4, ., 2, ., 1, ., 20.87520.98991.0yesno
Q9ZJQ9FUMC_HELPJ4, ., 2, ., 1, ., 20.56390.91950.9870yesno
Q8ZPL7FUMC_SALTY4, ., 2, ., 1, ., 20.60730.91950.9785yesno
P97807FUMH_MOUSE4, ., 2, ., 1, ., 20.71360.92550.9072yesno
O69294FUMC_CAMJE4, ., 2, ., 1, ., 20.57480.91950.9870yesno
Q8XQE8FUMC_RALSO4, ., 2, ., 1, ., 20.61000.91540.9869yesno
Q1RHL6FUMC_RICBR4, ., 2, ., 1, ., 20.62930.92550.9935yesno
Q8KTE1FUMC_METEA4, ., 2, ., 1, ., 20.64940.92750.9766yesno
Q83CL8FUMC_COXBU4, ., 2, ., 1, ., 20.60430.91750.9934yesno
Q55674FUMC_SYNY34, ., 2, ., 1, ., 20.58870.92150.9828N/Ano
Q83ML8FUMC_SHIFL4, ., 2, ., 1, ., 20.60950.91950.9785yesno
P07954FUMH_HUMAN4, ., 2, ., 1, ., 20.71800.92550.9019yesno
Q7W0A2FUMC_BORPE4, ., 2, ., 1, ., 20.62580.91140.9784yesno
Q8FHA7FUMC_ECOL64, ., 2, ., 1, ., 20.61170.91950.9785yesno
P55250FUMH_RHIOR4, ., 2, ., 1, ., 20.71860.92750.9331N/Ano
Q8YB50FUMC_BRUME4, ., 2, ., 1, ., 20.63910.91750.9848yesno
P10173FUMH_PIG4, ., 2, ., 1, ., 20.71580.92550.9871yesno
Q8X769FUMC_ECO574, ., 2, ., 1, ., 20.61170.91950.9785N/Ano
Q7VKC9FUMC_HAEDU4, ., 2, ., 1, ., 20.58910.91950.9849yesno
Q7SX99FUMH_DANRE4, ., 2, ., 1, ., 20.70610.94960.9273yesno
O94552FUMH_SCHPO4, ., 2, ., 1, ., 20.68770.91950.8788yesno
Q7N4H8FUMC_PHOLL4, ., 2, ., 1, ., 20.60560.91540.9806yesno
Q68W74FUMC_RICTY4, ., 2, ., 1, ., 20.61950.91750.9891yesno
Q9A6I5FUMC_CAUCR4, ., 2, ., 1, ., 20.64790.92350.9913yesno
Q7WG65FUMC_BORBR4, ., 2, ., 1, ., 20.62580.91140.9784yesno
Q54VA2FUMH_DICDI4, ., 2, ., 1, ., 20.70770.92550.9484yesno
Q60HF9FUMH_MACFA4, ., 2, ., 1, ., 20.71800.92550.9019N/Ano
P14408FUMH_RAT4, ., 2, ., 1, ., 20.71360.92550.9072yesno
Q9CMK1FUMC_PASMU4, ., 2, ., 1, ., 20.60520.92150.9870yesno
P95331FUMC_MYXXD4, ., 2, ., 1, ., 20.59390.92350.9849yesno
Q82SM5FUMC_NITEU4, ., 2, ., 1, ., 20.60040.91340.9826yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.998
4th Layer4.2.1.20.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
PLN00134458 PLN00134, PLN00134, fumarate hydratase; Provisiona 0.0
PRK00485464 PRK00485, fumC, fumarate hydratase; Reviewed 0.0
cd01362455 cd01362, Fumarase_classII, Class II fumarases 0.0
COG0114462 COG0114, FumC, Fumarase [Energy production and con 0.0
cd01596450 cd01596, Aspartase_like, aspartase (L-aspartate am 0.0
TIGR00979458 TIGR00979, fumC_II, fumarate hydratase, class II 0.0
PRK12273472 PRK12273, aspA, aspartate ammonia-lyase; Provision 0.0
PRK12425464 PRK12425, PRK12425, fumarate hydratase; Provisiona 0.0
cd01357450 cd01357, Aspartase, Aspartase 0.0
PRK13353473 PRK13353, PRK13353, aspartate ammonia-lyase; Provi 0.0
COG1027471 COG1027, AspA, Aspartate ammonia-lyase [Amino acid 1e-179
TIGR00839468 TIGR00839, aspA, aspartate ammonia-lyase 1e-150
PRK14515479 PRK14515, PRK14515, aspartate ammonia-lyase; Provi 1e-129
pfam00206312 pfam00206, Lyase_1, Lyase 1e-127
cd01334325 cd01334, Lyase_I, Lyase class I family; a group of 1e-117
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 1e-58
pfam1041555 pfam10415, FumaraseC_C, Fumarase C C-terminus 9e-26
cd01595381 cd01595, Adenylsuccinate_lyase_like, Adenylsuccina 1e-22
COG0015438 COG0015, PurB, Adenylosuccinate lyase [Nucleotide 1e-19
cd01597437 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco 7e-19
TIGR00928435 TIGR00928, purB, adenylosuccinate lyase 1e-16
PRK08540449 PRK08540, PRK08540, adenylosuccinate lyase; Review 3e-16
cd01360387 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate 5e-15
PRK06390451 PRK06390, PRK06390, adenylosuccinate lyase; Provis 5e-13
PRK09053452 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cyc 6e-12
TIGR00838455 TIGR00838, argH, argininosuccinate lyase 1e-11
TIGR02426338 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona 1e-09
COG0165459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 1e-08
cd01359435 cd01359, Argininosuccinate_lyase, Argininosuccinat 8e-08
cd01598425 cd01598, PurB, PurB_like adenylosuccinases (adenyl 1e-07
PLN02646474 PLN02646, PLN02646, argininosuccinate lyase 2e-07
cd03302436 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate 8e-07
PRK07380431 PRK07380, PRK07380, adenylosuccinate lyase; Provis 9e-07
PRK08937216 PRK08937, PRK08937, adenylosuccinate lyase; Provis 1e-06
PRK07492435 PRK07492, PRK07492, adenylosuccinate lyase; Provis 5e-06
PRK06705502 PRK06705, PRK06705, argininosuccinate lyase; Provi 1e-05
PRK09285456 PRK09285, PRK09285, adenylosuccinate lyase; Provis 3e-04
PRK12308 614 PRK12308, PRK12308, bifunctional argininosuccinate 0.001
PLN02848458 PLN02848, PLN02848, adenylosuccinate lyase 0.002
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional Back     alignment and domain information 
 Score =  913 bits (2361), Expect = 0.0
 Identities = 398/456 (87%), Positives = 418/456 (91%), Gaps = 2/456 (0%)

Query: 44  FGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPA 102
            GPI VP+DKLWGAQTQRSLQNF+IGGERERMPEPIVRAFGI+KK AAKVNMEYG LDP 
Sbjct: 1   MGPIQVPADKLWGAQTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPD 60

Query: 103 IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IV 161
           IGKAIMQAA EVAEGKL+DHFPLVVWQTGSGTQ+NMNANEVIANRAAEILG   GEK  V
Sbjct: 61  IGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILGGPVGEKSPV 120

Query: 162 HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTH 221
           HPNDHVNRSQSSNDTFPT MHIAAA E +SRLIP LK LH SL +KS EFKDIVKIGRTH
Sbjct: 121 HPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTH 180

Query: 222 TQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS 281
            QDA PLTLGQEFSGY TQVKYG++RV C LPR+Y+LAQGGTAVGTGLNTKKGFD KIA+
Sbjct: 181 LQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTKKGFDEKIAA 240

Query: 282 AVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGE 341
           AVAEET LPFVTA NKFEALAAHDAFVE SGALNTVA SLMKIAND+RLLGSGPRCGLGE
Sbjct: 241 AVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGE 300

Query: 342 LILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASG 401
           L LPENEPGSSIMPGKVNPTQCEALTMVCAQV+GNHVAITVGGS GHFELNVFKP+IA  
Sbjct: 301 LNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPLIAYN 360

Query: 402 LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKA 461
           LLHS+RLLGDASASF KNCVRGI+ANRERISKLLHESLMLVT+LNPKIGYD AAAVAKKA
Sbjct: 361 LLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYDKAAAVAKKA 420

Query: 462 HKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 497
           HKEGTTLK+AALKLGVL +EEFD LVVPEKM GPSD
Sbjct: 421 HKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGPSD 456

Length = 458
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed Back     alignment and domain information
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases Back     alignment and domain information
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II Back     alignment and domain information
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|176462 cd01357, Aspartase, Aspartase Back     alignment and domain information
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase Back     alignment and domain information
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|204481 pfam10415, FumaraseC_C, Fumarase C C-terminus Back     alignment and domain information
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase Back     alignment and domain information
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
COG0114462 FumC Fumarase [Energy production and conversion] 100.0
KOG1317487 consensus Fumarase [Energy production and conversi 100.0
COG1027471 AspA Aspartate ammonia-lyase [Amino acid transport 100.0
PRK12425464 fumarate hydratase; Provisional 100.0
PRK14515479 aspartate ammonia-lyase; Provisional 100.0
PLN00134458 fumarate hydratase; Provisional 100.0
TIGR00979458 fumC_II fumarate hydratase, class II. Putative fum 100.0
PRK13353473 aspartate ammonia-lyase; Provisional 100.0
PRK00485464 fumC fumarate hydratase; Reviewed 100.0
PRK12273472 aspA aspartate ammonia-lyase; Provisional 100.0
TIGR00839468 aspA aspartate ammonia-lyase. Fumarate hydratase s 100.0
cd01357450 Aspartase Aspartase. This subgroup contains Escher 100.0
cd01362455 Fumarase_classII Class II fumarases. This subgroup 100.0
cd01596450 Aspartase_like aspartase (L-aspartate ammonia-lyas 100.0
PRK09053452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
PRK00855459 argininosuccinate lyase; Provisional 100.0
cd01597437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 100.0
TIGR00838455 argH argininosuccinate lyase. This model describes 100.0
TIGR00928435 purB adenylosuccinate lyase. This family consists 100.0
PLN02646474 argininosuccinate lyase 100.0
PRK08540449 adenylosuccinate lyase; Reviewed 100.0
COG0165459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
cd01359435 Argininosuccinate_lyase Argininosuccinate lyase (a 100.0
PRK07492435 adenylosuccinate lyase; Provisional 100.0
PRK08470442 adenylosuccinate lyase; Provisional 100.0
PRK06390451 adenylosuccinate lyase; Provisional 100.0
PRK04833455 argininosuccinate lyase; Provisional 100.0
PRK07380431 adenylosuccinate lyase; Provisional 100.0
COG0015438 PurB Adenylosuccinate lyase [Nucleotide transport 100.0
PRK06705502 argininosuccinate lyase; Provisional 100.0
cd03302436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 100.0
cd01595381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 100.0
TIGR02426338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 100.0
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 100.0
cd01360387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 100.0
PRK02186887 argininosuccinate lyase; Provisional 100.0
KOG1316464 consensus Argininosuccinate lyase [Amino acid tran 100.0
PRK05975351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
cd01334325 Lyase_I Lyase class I family; a group of proteins 100.0
PRK09285456 adenylosuccinate lyase; Provisional 100.0
PRK06389434 argininosuccinate lyase; Provisional 100.0
cd01598425 PurB PurB_like adenylosuccinases (adenylsuccinate 100.0
PLN02848458 adenylosuccinate lyase 100.0
PF00206312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 100.0
KOG2700481 consensus Adenylosuccinate lyase [Nucleotide trans 100.0
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 100.0
PRK08937216 adenylosuccinate lyase; Provisional 99.97
PF1041555 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR0 99.26
PF1039781 ADSL_C: Adenylosuccinate lyase C-terminus; InterPr 97.81
PF1469870 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1 95.88
PF08328115 ASL_C: Adenylosuccinate lyase C-terminal; InterPro 93.85
KOG2700481 consensus Adenylosuccinate lyase [Nucleotide trans 87.21
>COG0114 FumC Fumarase [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-135  Score=1010.66  Aligned_cols=459  Identities=68%  Similarity=1.046  Sum_probs=453.4

Q ss_pred             cccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 010908           36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV  114 (497)
Q Consensus        36 ~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev  114 (497)
                      .+|+|+|+||+++||.|+|||.||+|+++||++|+.  ++|..+|++++.+|+|+|++|.++| ||++.+++|.++|++|
T Consensus         2 ~~R~E~Dt~G~i~Vpad~~wgAQTqRs~~nF~ig~~--~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev   79 (462)
T COG0114           2 TYRIEHDTMGEVEVPADALWGAQTQRSLENFPIGGE--KMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEV   79 (462)
T ss_pred             CcccccccCccccccHHHHHHHHHHHHHhcCCcccc--cCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999987  7999999999999999999999999 9999999999999999


Q ss_pred             HccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHH
Q 010908          115 AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL  193 (497)
Q Consensus       115 ~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L  193 (497)
                      ++|+++++||+++||+||||++|||+||||++++++++|++.|.+. ||||||||+||||||++|||||+++..++...|
T Consensus        80 ~~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~L  159 (462)
T COG0114          80 LAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRL  159 (462)
T ss_pred             HcCcccCCCCeEEEecCCCccccccHHHHHHHHHHHHhCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998888766 999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC
Q 010908          194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK  273 (497)
Q Consensus       194 ~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~  273 (497)
                      ++.|+.|.++|.+|+++|++++++||||+|||+|+||||+|++|+.+|.+.++|++.+.+++..+++||||||||+|+++
T Consensus       160 iPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAVGTGlNa~p  239 (462)
T COG0114         160 IPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHP  239 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCC
Q 010908          274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSI  353 (497)
Q Consensus       274 ~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSi  353 (497)
                      +|++++.+++++.+|+++.+++|.|++++++|.+++++++|..+|++|.|||||||+|.||||||+|||.+|+++|||||
T Consensus       240 ~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lPenePGSSI  319 (462)
T COG0114         240 EFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENEPGSSI  319 (462)
T ss_pred             cHHHHHHHHHHHHhCCCcccCCcHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHH
Q 010908          354 MPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK  433 (497)
Q Consensus       354 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~  433 (497)
                      ||+|+||++||.+.++|.||+|+++++.+++++|+||+|+++|+++||+|+|+++|++++..|.++|+.||++|++||++
T Consensus       320 MPGKVNPtq~EA~tmv~~QV~Gnd~ai~~ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~  399 (462)
T COG0114         320 MPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKE  399 (462)
T ss_pred             CCCCCCchhHHHHHHHHHHHHcchHHHHHhhccCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908          434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS  496 (497)
Q Consensus       434 ~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~  496 (497)
                      ++++|+|++|+|+|+|||++|++|+|+|+++|+|++|++.+.|++|++|||+|+||++|+++.
T Consensus       400 ~l~~SlmLVTaLnp~IGYdkAa~IAK~A~keg~tlreaa~~~G~lte~efd~~v~Pe~mv~~~  462 (462)
T COG0114         400 LLERSLMLVTALNPHIGYDKAAKIAKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGPG  462 (462)
T ss_pred             HHhhCchHHHhcccccchHHHHHHHHHHHHCCCcHHHHHHHcCCCCHHHHHHhcCHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999974

>KOG1317 consensus Fumarase [Energy production and conversion] Back     alignment and domain information
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>PLN02848 adenylosuccinate lyase Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK08937 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle Back     alignment and domain information
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) [] Back     alignment and domain information
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B Back     alignment and domain information
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli) Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
3e04_A490 Crystal Structure Of Human Fumarate Hydratase Lengt 0.0
1yfm_A488 Recombinant Yeast Fumarase Length = 488 0.0
3gtd_A482 2.4 Angstrom Crystal Structure Of Fumarate Hydratas 1e-168
4hgv_A495 Crystal Structure Of A Fumarate Hydratase Length = 1e-165
3tv2_A459 Structure Of A Class Ii Fumarate Hydratase From Bur 1e-163
1fuo_A467 Fumarase C With Bound Citrate Length = 467 1e-157
1fup_A472 Fumarase With Bound Pyromellitic Acid Length = 472 1e-157
1kq7_A467 E315q Mutant Form Of Fumarase C From E.Coli Length 1e-157
1fur_A467 Fumarase Mutant H188n With Bound Substrate L-Malate 1e-156
2fus_A467 Mutations Of Fumarase That Distinguish Between The 1e-156
1vdk_A466 Crystal Structure Of Fumarase From Thermus Thermoph 1e-150
3qbp_A478 Crystal Structure Of Fumarase Fum From Mycobacteriu 1e-122
4adl_A495 Crystal Structures Of Rv1098c In Complex With Malat 1e-119
3no9_A475 Crystal Structure Of Apo Fumarate Hydratase From My 1e-119
4apa_A474 Crystal Structure Of Mycobacterium Tuberculosis Fum 1e-119
4apb_A474 Crystal Structure Of Mycobacterium Tuberculosis Fum 1e-119
3rd8_A489 Crystal Structure Of Fumarate Hydratase Class Ii My 1e-118
3rrp_A471 Crystal Structure Of Fumarate Hydratase Fum From My 1e-111
1j3u_A468 Crystal Structure Of Aspartase From Bacillus Sp. Ym 1e-106
3r6y_A401 Crystal Structure Of Chymotrypsin-Treated Aspartase 1e-91
3oce_A474 Crystal Structure Of Fumarate Lyase:delta Crystalli 8e-90
3ocf_A478 Crystal Structure Of Fumarate Lyase:delta Crystalli 1e-89
1jsw_A478 Native L-Aspartate Ammonia Lyase Length = 478 7e-89
3c8t_A451 Crystal Structure Of Fumarate Lyase From Mesorhizob 5e-10
1re5_A450 Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lac 8e-09
4eei_A438 Crystal Structure Of Adenylosuccinate Lyase From Fr 2e-08
2e9f_A462 Crystal Structure Of T.th.hb8 Argininosuccinate Lya 8e-07
2qga_B465 Plasmodium Vivax Adenylosuccinate Lyase Pv003765 Wi 1e-06
1q5n_A454 Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate 2e-06
1f1o_A431 Structural Studies Of Adenylosuccinate Lyases Lengt 7e-06
2hvg_A482 Crystal Structure Of Adenylosuccinate Lyase From Pl 1e-05
1c3u_A431 T. Maritima Adenylosuccinate Lyase Length = 431 1e-05
1c3c_A429 T. Maritima Adenylosuccinate Lyase Length = 429 2e-05
1dof_A403 The Crystal Structure Of Adenylosuccinate Lyase Fro 8e-05
3gzh_A482 Crystal Structure Of Phosphate-Bound Adenylosuccina 4e-04
1tj7_A457 Structure Determination And Refinement At 2.44 A Re 4e-04
2pfm_A444 Crystal Structure Of Adenylosuccinate Lyase (Purb) 6e-04
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase Length = 490 Back     alignment and structure 
Iteration: 1

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/471 (70%), Positives = 385/471 (81%), Gaps = 1/471 (0%)
Query: 26  YGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGI 85
           Y     +   SFR E DTFG + VP+DK +GAQT RS  NF IGG  ERMP P+++AFGI
Sbjct: 19  YFQSMMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGI 78
Query: 86  LKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIA 145
           LK+ AA+VN +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+
Sbjct: 79  LKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVIS 138
Query: 146 NRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSL 204
           NRA E+LG + G KI VHPNDHVN+SQSSNDTFPT MHIAAA+E +  L+P L+ LH++L
Sbjct: 139 NRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDAL 198
Query: 205 HSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA 264
            +KS EF  I+KIGRTHTQDA PLTLGQEFSGY  QVKY + R+   +PR+Y+LA GGTA
Sbjct: 199 DAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTA 258
Query: 265 VGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKI 324
           VGTGLNT+ GF  K+A+ VA  T LPFVTA NKFEALAAHDA VE SGA+NT A SLMKI
Sbjct: 259 VGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKI 318
Query: 325 ANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGG 384
           AND+R LGSGPR GLGELILPENEPGSSIMPGKVNPTQCEA+TMV AQV+GNHVA+TVGG
Sbjct: 319 ANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGG 378
Query: 385 SNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS 444
           SNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+
Sbjct: 379 SNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTA 438
Query: 445 LNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 495
           LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct: 439 LNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 489
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase Length = 488 Back     alignment and structure
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From Rickettsia Prowazekii Length = 482 Back     alignment and structure
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase Length = 495 Back     alignment and structure
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From Burkholderia Pseudomallei Length = 459 Back     alignment and structure
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate Length = 467 Back     alignment and structure
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid Length = 472 Back     alignment and structure
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli Length = 467 Back     alignment and structure
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At Putative Activator Site Length = 467 Back     alignment and structure
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active Site And A Nearby Dicarboxylic Acid Binding Site Length = 467 Back     alignment and structure
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus Hb8 Length = 466 Back     alignment and structure
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium Marinum Length = 478 Back     alignment and structure
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate Length = 495 Back     alignment and structure
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From Mycobacterium Tuberculosis Length = 475 Back     alignment and structure
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (Rv1098c) S318a In Apo Form Length = 474 Back     alignment and structure
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase ( Rv1098c) S318c In Complex With Fumarate Length = 474 Back     alignment and structure
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii Mycobacterium Smegmatis Length = 489 Back     alignment and structure
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From Mycobacterium Abscessus With Malate Bound Length = 471 Back     alignment and structure
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1 Length = 468 Back     alignment and structure
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From Bacillus Sp. Ym55-1 Length = 401 Back     alignment and structure
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis Bound To Cobalt Length = 474 Back     alignment and structure
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis In Native Form Length = 478 Back     alignment and structure
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase Length = 478 Back     alignment and structure
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. Bnc1 Length = 451 Back     alignment and structure
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 450 Back     alignment and structure
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Francisella Tularensis Complexed With Amp And Succinate Length = 438 Back     alignment and structure
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase Complexed With L-arginine Length = 462 Back     alignment and structure
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp Bound Length = 465 Back     alignment and structure
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus Sp. Adp1 Length = 454 Back     alignment and structure
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases Length = 431 Back     alignment and structure
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Plasmodium Vivax Length = 482 Back     alignment and structure
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 429 Back     alignment and structure
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From Pyrobaculum Aerophilum: Insights Into Thermal Stability And Human Pathology Length = 403 Back     alignment and structure
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate Lyase From E. Coli Length = 482 Back     alignment and structure
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A Resolution Of Argininosuccinate Lyase From E. Coli Length = 457 Back     alignment and structure
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From Bacillus Anthracis Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 0.0
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 0.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 0.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 0.0
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 0.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 0.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 0.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 0.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 0.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 2e-27
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 7e-27
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 9e-27
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 4e-23
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 5e-22
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 3e-20
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 1e-18
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 2e-18
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 3e-14
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 4e-14
1yis_A478 Adenylosuccinate lyase; structural genomics, PSI, 4e-14
2j91_A503 Adenylosuccinate lyase; disease mutation, adenylos 6e-14
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 Back     alignment and structure
 Score =  945 bits (2445), Expect = 0.0
 Identities = 325/482 (67%), Positives = 374/482 (77%), Gaps = 1/482 (0%)

Query: 15  STTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERER 74
           + + +      Y    R  ++SFR E D FG I VP+DK WGAQTQRS QNF IGG RER
Sbjct: 6   NCSCKTFVKSSYKLNIRRMNSSFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARER 65

Query: 75  MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 133
           MP P+V AFG+LKK AA VN   G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSG
Sbjct: 66  MPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSG 125

Query: 134 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193
           TQSNMNANEVI+NRA EILG K G K VHPN+H N+SQSSNDTFPTVMHIAA+++  + L
Sbjct: 126 TQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNEL 185

Query: 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 253
           IP L  L N+L +KS EF  IVKIGRTH QDATPLTLGQEFSGY  QV+ GI RV   L 
Sbjct: 186 IPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLK 245

Query: 254 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 313
            +  LAQGGTAVGTGLNTK GFDVKIA  +++ET L F TA N+FEALAAHDA VE SGA
Sbjct: 246 TLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGA 305

Query: 314 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 373
           LNT+A SL KIA D+R LGSGPRCG  EL+LPENEPGSSIMPGKVNPTQ EALT VC QV
Sbjct: 306 LNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQV 365

Query: 374 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433
           +GN+ AIT  GS G FELNVFKP++ + LL+S+RL+ DA+ SF  +CV GI+AN  RI +
Sbjct: 366 MGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHE 425

Query: 434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 493
           LL +SLMLVT+LNPKIGYD A+ VAK AHK+G TLK++AL+LGVL  +EFD  VVPE M+
Sbjct: 426 LLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 485

Query: 494 GP 495
           GP
Sbjct: 486 GP 487
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Length = 466 Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Length = 490 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Length = 467 Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Length = 495 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB: 1j3u_A 3r6v_A 3r6y_A Length = 468 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Length = 478 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451 Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403 Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438 Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Length = 459 Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Length = 462 Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478 Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503 Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 100.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 100.0
4hgv_A495 Fumarase C, fumarate hydratase class II; nysgrc, P 100.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 100.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 100.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 100.0
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 100.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 100.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 100.0
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 100.0
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 100.0
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 100.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 100.0
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 100.0
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 100.0
2e9f_A462 Argininosuccinate lyase; alpha helix bundle; HET: 100.0
1k7w_A468 Delta 2 crystallin; eye lens protein, argininosucc 100.0
1tj7_A457 Argininosuccinate lyase; crystallin, E. coli, fuma 100.0
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 100.0
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 100.0
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 100.0
1yis_A478 Adenylosuccinate lyase; structural genomics, PSI, 100.0
2j91_A503 Adenylosuccinate lyase; disease mutation, adenylos 100.0
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 100.0
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 100.0
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 100.0
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
Probab=100.00  E-value=3e-125  Score=999.56  Aligned_cols=460  Identities=63%  Similarity=0.973  Sum_probs=444.4

Q ss_pred             ccccccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Q 010908           33 YSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAA  111 (497)
Q Consensus        33 ~~~~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~  111 (497)
                      .|.++|+|+|++|+++||.|+|||.||+|+++||+|||.  ++|+++|++|+.||+|+|.+|.++| ||++.+++|.++|
T Consensus        21 ~~~~~r~e~d~~g~~~vp~~~~~g~qt~Ra~~nf~i~~~--~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~   98 (482)
T 3gtd_A           21 SMKNYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQ--KMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAI   98 (482)
T ss_dssp             ---CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCCSC--BCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ccccCcCccccCCCccCCcccccCHHHHHHHHhccccCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            344699999999999999999999999999999999997  6899999999999999999999999 9999999999999


Q ss_pred             HHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHH
Q 010908          112 QEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETN  190 (497)
Q Consensus       112 ~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~  190 (497)
                      ++|.+++++++||+++||+|+||++|||+||||+|+++|++|++.|+|. ||||||||+||||||++||+++|++++++.
T Consensus        99 ~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~  178 (482)
T 3gtd_A           99 DRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATK  178 (482)
T ss_dssp             HHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998889875 899999999999999999999999988875


Q ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCC
Q 010908          191 SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN  270 (497)
Q Consensus       191 ~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~  270 (497)
                      +.|.+.|..|+++|.+||++|++++|+||||+|||+|+||||||++|+++|.|+++||++++++++.+||||||||||++
T Consensus       179 ~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~  258 (482)
T 3gtd_A          179 QQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGIN  258 (482)
T ss_dssp             HTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCC
Q 010908          271 TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG  350 (497)
Q Consensus       271 ~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~G  350 (497)
                      ++++|++++.+++++.|||++++.+|++|++++||++++++++|+.++++|+|||+|||+|+||||+|||||.+|+.++|
T Consensus       259 ~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~G  338 (482)
T 3gtd_A          259 SKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEPG  338 (482)
T ss_dssp             SCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC
T ss_pred             CCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECCCCCCC
Confidence            99999999999999999999978899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHH
Q 010908          351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER  430 (497)
Q Consensus       351 SSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~er  430 (497)
                      |||||||+||+.+|.++++|++|+|+++++++++..|+||+|+++|+++|++|++++++.+++..|+.+|++||+||++|
T Consensus       339 SSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~er  418 (482)
T 3gtd_A          339 SSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIAR  418 (482)
T ss_dssp             CSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccC
Q 010908          431 ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG  494 (497)
Q Consensus       431 m~~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g  494 (497)
                      |+++++++++++|+|++++||+.|++++++|.++|++|+|++.+.++|+++||+++|||++|+|
T Consensus       419 m~~~l~~s~~lvTaLa~~iGy~~a~~ia~~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~~~g  482 (482)
T 3gtd_A          419 INTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMIS  482 (482)
T ss_dssp             HHHHHHHCGGGHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHHSCC----
T ss_pred             HHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999986
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 497
d1yfma_459 a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy 1e-176
d1vdka_460 a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax 1e-162
d1fuoa_456 a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 1e-162
d1j3ua_462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 1e-136
d1jswa_459 a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric 1e-133
d1re5a_448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 1e-49
d1c3ca_429 a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga 8e-43
d1q5na_444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 1e-42
d1k62b_459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 3e-38
d1tj7a_455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 1e-36
d1tjva_449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 8e-34
d1dofa_402 a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py 3e-33
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  502 bits (1293), Expect = e-176
 Identities = 321/459 (69%), Positives = 365/459 (79%), Gaps = 1/459 (0%)

Query: 36  SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
           SFR E D FG I VP+DK WGAQTQRS QNF IGG RERMP P+V AFG+LKK AA VN 
Sbjct: 1   SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNE 60

Query: 96  EYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
             G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSGTQSNMNANEVI+NRA EILG 
Sbjct: 61  SLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGG 120

Query: 155 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 214
           K G K VHPN+H N+SQSSNDTFPTVMHIAA+++  + LIP L  L N+L +KS EF  I
Sbjct: 121 KIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHI 180

Query: 215 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274
           VKIGRTH QDATPLTLGQEFSGY  QV+ GI RV   L  +  LAQGGTAVGTGLNTK G
Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG 240

Query: 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 334
           FDVKIA  +++ET L F TA N+FEALAAHDA VE SGALNT+A SL KIA D+R LGSG
Sbjct: 241 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 300

Query: 335 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 394
           PRCG  EL+LPENEPGSSIMPGKVNPTQ EALT VC QV+GN+ AIT  GS G FELNVF
Sbjct: 301 PRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVF 360

Query: 395 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA 454
           KP++ + LL+S+RL+ DA+ SF  +CV GI+AN  RI +LL +SLMLVT+LNPKIGYD A
Sbjct: 361 KPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAA 420

Query: 455 AAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 493
           + VAK AHK+G TLK++AL+LGVL  +EFD  VVPE M+
Sbjct: 421 SKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d1yfma_459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 100.0
d1vdka_460 Fumarase {Thermus thermophilus [TaxId: 274]} 100.0
d1jswa_459 L-aspartate ammonia lyase {Escherichia coli [TaxId 100.0
d1j3ua_462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 100.0
d1fuoa_456 Fumarase {Escherichia coli [TaxId: 562]} 100.0
d1re5a_448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1q5na_444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1tj7a_455 Argininosuccinate lyase/delta-crystallin {Escheric 100.0
d1k62b_459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1c3ca_429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 100.0
d1f1oa_408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 100.0
d1tjva_449 Argininosuccinate lyase/delta-crystallin {Domestic 100.0
d1dofa_402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 100.0
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-119  Score=950.06  Aligned_cols=458  Identities=70%  Similarity=1.042  Sum_probs=440.0

Q ss_pred             cccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 010908           36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV  114 (497)
Q Consensus        36 ~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev  114 (497)
                      +||+|+|++|+++||.|+|||.||+|+++||+|||...++|+.+|++++.||+|+|+||+++| ||++.+++|.++|++|
T Consensus         1 ~~r~e~d~~g~~~vp~~~~~G~~T~ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~lG~l~~~~a~aI~~a~~ei   80 (459)
T d1yfma_           1 SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEV   80 (459)
T ss_dssp             CEEEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCccCCcccchhHHHHHHHHCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999987668899999999999999999999999 9999999999999999


Q ss_pred             HccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHH
Q 010908          115 AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI  194 (497)
Q Consensus       115 ~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~  194 (497)
                      .+++++++||++++|+|+||++|||+||||++++.+++|.+.|.+.||||||||+||||||++|||++|++++++.+.|.
T Consensus        81 ~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~~~~~~~~~~vhp~d~v~~gqSsnD~~~Ta~~l~~~~~~~~~L~  160 (459)
T d1yfma_          81 ASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELI  160 (459)
T ss_dssp             HHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HcCCccccccchHHhhccccccccchhhhhHHHHHHHhhccccccccCcchhhhhccchHhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887777779999999999999999999999999888766899


Q ss_pred             HHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCC
Q 010908          195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG  274 (497)
Q Consensus       195 ~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~  274 (497)
                      +.|..|+++|.+||++|++|+||||||+|||+||||||||++|+++|.|+++||.+++++++.+||||||+|||++++++
T Consensus       161 ~~L~~L~~~L~~kA~e~~~~im~GRTHlQ~A~PiT~G~~~~~~~~~l~r~~~RL~~~~~~l~~~~lGgta~gtg~~a~~~  240 (459)
T d1yfma_         161 PELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG  240 (459)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTT
T ss_pred             HHHHHHHHHHHHHHHhccCeeehhHhhCCcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhccccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCC
Q 010908          275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM  354 (497)
Q Consensus       275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiM  354 (497)
                      ++..+.+.+++.||+++.+++|++||+++||++++++++|++++.+|+|||+|||+|+|+|++||+|+.+|+.++|||||
T Consensus       241 ~~~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~~~~g~~El~~~~~~~GSSiM  320 (459)
T d1yfma_         241 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIM  320 (459)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTS
T ss_pred             chHHHHHHHHHHcCCCCcccCchHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeEEeeecccccccCccc
Confidence            99999999999999999899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908          355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL  434 (497)
Q Consensus       355 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~  434 (497)
                      |||+||+.+|.++++|++|+|+++++.++...+++|+|.+.|.+.|+++++++.+.+++..|+.+|++||+||++||+++
T Consensus       321 P~K~NPv~~E~v~~~~~~v~G~~~~i~~~~~~~~~e~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~  400 (459)
T d1yfma_         321 PGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHEL  400 (459)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             ccccChhhHHHHHHHHHHhccHhhHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             hhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCccccc
Q 010908          435 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI  493 (497)
Q Consensus       435 l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~  493 (497)
                      ++++++++|+|+|++||+.|+++|++|.++|++|+|++.+.+.|+++|||+++||++|+
T Consensus       401 l~~s~~l~taL~~~iGy~~A~~ia~~a~~~g~~lre~~~~~~~Ls~~eld~lldP~~~l  459 (459)
T d1yfma_         401 LTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML  459 (459)
T ss_dssp             HHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHCCGGGCC
T ss_pred             HHhCccHHHHhcchhhHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHcCHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999986
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure