Citrus Sinensis ID: 010912

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MERGDQKSSLQSPLILSNERGHEFDGETSQRQSICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALHRAQRTDSLTNMAMKS
ccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccc
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHEHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccc
mergdqksslqsplilsnerghefdgetsqRQSICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIalgqdheistgagtynrwmipSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSgllpnpkletSVLSISLNTCWMVYMISVGLGGAISTRVsnelgagnskGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMlsgaargcgwqNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALHRAQRTDSLTNMAMKS
mergdqksslqsplilsnerghefdgetsqRQSICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAItegatvgiTTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALhraqrtdsltnmamks
MERGDQKSSLQSPLILSNERGHEFDGETSQRQSICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGElalssasiassfasvsgfsvllGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALHRAQRTDSLTNMAMKS
*********************************ICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATN******************
**********************************CSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNA*****************
************PLILSNER*************ICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALHRAQRTDSLTNMAMKS
********************************SICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALHRAQRTD*********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
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MERGDQKSSLQSPLILSNERGHEFDGETSQRQSICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALHRAQRTDSLTNMAMKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q9SIA5476 MATE efflux family protei no no 0.885 0.924 0.456 1e-106
Q8RWF5483 MATE efflux family protei no no 0.917 0.944 0.444 1e-106
Q9SIA4476 MATE efflux family protei no no 0.951 0.993 0.433 1e-104
Q9SIA3476 MATE efflux family protei no no 0.887 0.926 0.455 1e-104
Q8GXM8476 MATE efflux family protei no no 0.935 0.976 0.432 1e-104
Q9SIA1477 MATE efflux family protei no no 0.873 0.909 0.453 1e-104
Q9LUH2477 MATE efflux family protei no no 0.933 0.972 0.407 4e-99
Q9LUH3469 MATE efflux family protei no no 0.919 0.974 0.407 9e-98
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.909 0.891 0.387 2e-82
Q9USK3539 Uncharacterized transport yes no 0.895 0.825 0.342 5e-65
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function desciption
 Score =  387 bits (994), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/440 (45%), Positives = 280/440 (63%)

Query: 50  LAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLC 109
           LA P+  V++ QY L VIS+M  GH GEL LS  ++A+SF +V+GFS++ G+  ALETLC
Sbjct: 34  LAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLVGALETLC 93

Query: 110 GQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRW 169
           GQA+GAKQY  +G +   A+ + + +   ++I+W Y   ILI+LGQD EIS  AG+Y  W
Sbjct: 94  GQAYGAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRIAGSYAFW 153

Query: 170 MIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSI 229
           +IP+LF   I+  L+RFL TQ  V P++  +  T L H+LVCW LVF  GL   G A++ 
Sbjct: 154 LIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMAT 213

Query: 230 TISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMV 289
           ++S W     L+ Y++FS +C KT    S + +  I  F +  +PSA MICLE+W FE++
Sbjct: 214 SVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEIL 273

Query: 290 VLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRV 349
           +L SGLLPNPKLETSVLSI L    + Y+IS G+  A+STRVSN LGAGN + AR+++  
Sbjct: 274 ILCSGLLPNPKLETSVLSICLTIETLHYVISAGVAAAVSTRVSNNLGAGNPQVARVSVLA 333

Query: 350 MIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGA 409
            + + I E A   I     RN+ G  +SN +EV+ YVA + PLL LS  LDGF  +L+G 
Sbjct: 334 GLCLWIVESAFFSILLFTCRNIIGYAFSNSKEVLDYVADLTPLLCLSFILDGFTAVLNGV 393

Query: 410 ARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIA 469
           ARG GWQ++ A+ N  +YY VG P  +  AF   + G GLW G++ G ++Q   L  V A
Sbjct: 394 ARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSRELNGKGLWCGVVVGSTVQATILAIVTA 453

Query: 470 TTNWDHEATNALHRAQRTDS 489
           + NW  +A  A  R   T++
Sbjct: 454 SINWKEQAEKARKRIVSTEN 473
Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
255582913485 TRANSPARENT TESTA 12 protein, putative [ 0.973 0.997 0.769 0.0
224111566481 predicted protein [Populus trichocarpa] 0.953 0.985 0.800 0.0
357444617484 Protein TRANSPARENT TESTA [Medicago trun 0.939 0.964 0.760 0.0
225424134511 PREDICTED: MATE efflux family protein 5 0.989 0.962 0.722 0.0
297737739454 unnamed protein product [Vitis vinifera] 0.881 0.964 0.744 0.0
225456065493 PREDICTED: MATE efflux family protein 6 0.963 0.971 0.656 0.0
297734274563 unnamed protein product [Vitis vinifera] 0.963 0.850 0.656 1e-180
356531168489 PREDICTED: MATE efflux family protein DT 0.975 0.991 0.624 1e-177
359491480491 PREDICTED: MATE efflux family protein DT 0.963 0.975 0.641 1e-175
356527876498 PREDICTED: MATE efflux family protein DT 0.971 0.969 0.631 1e-175
>gi|255582913|ref|XP_002532228.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528085|gb|EEF30159.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/490 (76%), Positives = 423/490 (86%), Gaps = 6/490 (1%)

Query: 1   MERGDQKSSLQSPLILSNERGHEFDGETSQRQSICSRANVIEEATKQIWLAGPLIAVSLL 60
           ME G+ +S L+S LI   E   E   E SQ+   C R + +EEA KQ WLAGPLI VS+L
Sbjct: 1   MEIGE-RSGLESTLIPVKELEDE---ELSQKG--CCRRDFLEEAKKQFWLAGPLITVSML 54

Query: 61  QYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRM 120
           QYCLQVISIMFVGHLGELALS AS+ASSFASV+GF+VLLGMGSALETLCGQA+GA+QY M
Sbjct: 55  QYCLQVISIMFVGHLGELALSGASMASSFASVTGFNVLLGMGSALETLCGQAYGAEQYHM 114

Query: 121 LGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGIL 180
           LGIH+QRAMLTLLA+SIPLAIIWFYTS IL+ LGQDHEIS GAGT+NR MIP+LFAY +L
Sbjct: 115 LGIHSQRAMLTLLALSIPLAIIWFYTSTILMFLGQDHEISAGAGTFNRSMIPALFAYSLL 174

Query: 181 QCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFL 240
           QCLNRFLQTQNNVFPMM+ S ITA LHILVCWVLVFKSGL SKGAAL+IT+S W+NV  L
Sbjct: 175 QCLNRFLQTQNNVFPMMVSSGITACLHILVCWVLVFKSGLGSKGAALAITVSYWINVLLL 234

Query: 241 AMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPK 300
           A YI  S AC KTWTGFS EALHD++SF+KLA+PSAIMICLEYWSFEMVVLLSGLLPNPK
Sbjct: 235 AFYINSSPACKKTWTGFSKEALHDVLSFVKLAVPSAIMICLEYWSFEMVVLLSGLLPNPK 294

Query: 301 LETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGAT 360
           LETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAG  +GA+LAL VMI++A++EG  
Sbjct: 295 LETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGRPEGAQLALCVMIIMALSEGLV 354

Query: 361 VGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCA 420
           VGI T+L+R VWGKLYSNEEEVIKYVA ++PLLALSDFLDGFQC+LSGAARGCGWQ LCA
Sbjct: 355 VGIVTVLLRQVWGKLYSNEEEVIKYVANILPLLALSDFLDGFQCVLSGAARGCGWQTLCA 414

Query: 421 YINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNA 480
            INLGAYY V IP A+LFAF  HIGGMGLWMGIICGL +QI+ALVT+ A TNWD EA  A
Sbjct: 415 CINLGAYYVVAIPCALLFAFVFHIGGMGLWMGIICGLLVQIVALVTINACTNWDQEAAKA 474

Query: 481 LHRAQRTDSL 490
           ++R  ++ S+
Sbjct: 475 INRVGKSGSI 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111566|ref|XP_002315903.1| predicted protein [Populus trichocarpa] gi|222864943|gb|EEF02074.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357444617|ref|XP_003592586.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481634|gb|AES62837.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|225424134|ref|XP_002280229.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737739|emb|CBI26940.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456065|ref|XP_002280423.1| PREDICTED: MATE efflux family protein 6 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734274|emb|CBI15521.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531168|ref|XP_003534150.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|359491480|ref|XP_002280388.2| PREDICTED: MATE efflux family protein DTX1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527876|ref|XP_003532532.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.951 0.973 0.576 2.4e-147
TAIR|locus:2027834476 AT1G73700 "AT1G73700" [Arabido 0.901 0.941 0.551 2e-134
TAIR|locus:2040839480 AT2G34360 "AT2G34360" [Arabido 0.903 0.935 0.536 2.4e-131
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.887 0.916 0.451 1.9e-106
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.915 0.938 0.459 3.6e-105
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.887 0.905 0.435 6e-103
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.953 0.983 0.429 4.2e-102
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.887 0.905 0.424 1.1e-101
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.955 0.985 0.414 1.9e-99
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.893 0.932 0.432 4.7e-96
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1439 (511.6 bits), Expect = 2.4e-147, P = 2.4e-147
 Identities = 275/477 (57%), Positives = 346/477 (72%)

Query:    19 ERGHEFDGETSQRQSICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGEX 78
             ERG   +G+ S    I  +++V EE  KQ+WL+GPLIAVSLLQ+CLQVIS+MFVGHLG  
Sbjct:     6 ERG---EGDLSW-PLIGEKSSVKEEVKKQLWLSGPLIAVSLLQFCLQVISVMFVGHLGSL 61

Query:    79 XXXXXXXXXXXXXXXXXXXXXGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIP 138
                                  G  SAL+TLCGQA+GAK+Y MLGI  QRAM  L   SIP
Sbjct:    62 PLSAASIATSFASVTGFSFLMGTASALDTLCGQAYGAKKYGMLGIQMQRAMFVLTLASIP 121

Query:   139 LAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMI 198
             L+IIW  T ++L+  GQ+  I+T AG+Y ++MIPS+FAYG+LQC NRFLQ QNNVFP++ 
Sbjct:   122 LSIIWANTEHLLVFFGQNKSIATLAGSYAKFMIPSIFAYGLLQCFNRFLQAQNNVFPVVF 181

Query:   199 CSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFS 258
             CS +T  LH+L+CWVLVFKSGL  +GAAL+ +IS W+NV  L  Y+KFS +C  TWTGFS
Sbjct:   182 CSGVTTSLHVLLCWVLVFKSGLGFQGAALANSISYWLNVVLLFCYVKFSPSCSLTWTGFS 241

Query:   259 AEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYM 318
              EAL DI+ F++LA+PSA+M+CLE WSFE++VLLSGLLPNP LETSVLSI LNT   ++M
Sbjct:   242 KEALRDILPFLRLAVPSALMVCLEMWSFELLVLLSGLLPNPVLETSVLSICLNTSGTMWM 301

Query:   319 ISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSN 378
             I  GL GA STR+SNELGAGN K A+LA+RV+I IA+ E   +G   IL+RN+WG  YS+
Sbjct:   302 IPFGLSGAASTRISNELGAGNPKVAKLAVRVVICIAVAESIVIGSVLILIRNIWGLAYSS 361

Query:   379 EEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLF 438
             E EV+ YVA MMP+LAL +FLD  QC+LSG ARGCGWQ + A INLG+YY VG+PS +L 
Sbjct:   362 ELEVVSYVASMMPILALGNFLDSLQCVLSGVARGCGWQKIGAIINLGSYYLVGVPSGLLL 421

Query:   439 AFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALHRAQRTDSLTNMAM 495
             AF  H+GG GLW+GIIC L +Q+  L  V   TNWD EA  A +R + + S+ + A+
Sbjct:   422 AFHFHVGGRGLWLGIICALVVQVFGLGLVTIFTNWDEEAKKATNRIESSSSVKDFAV 478
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009624 "response to nematode" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3V050S47A2_MOUSENo assigned EC number0.30650.96570.8376yesno
Q9USK3YJ2D_SCHPONo assigned EC number0.34270.89530.8256yesno
A1L1P9S47A1_DANRENo assigned EC number0.30080.96370.8118yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 0.0
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-68
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 8e-60
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-56
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-38
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 9e-36
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-34
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 3e-33
pfam01554161 pfam01554, MatE, MatE 4e-31
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-27
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-27
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 6e-24
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 5e-23
pfam01554161 pfam01554, MatE, MatE 8e-22
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 7e-18
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 3e-17
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 3e-17
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 7e-14
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 1e-13
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 6e-10
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 2e-09
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-08
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 6e-08
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 8e-08
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-05
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 8e-05
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 1e-04
TIGR01695502 TIGR01695, mviN, integral membrane protein MviN 2e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 4e-04
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 9e-04
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  514 bits (1326), Expect = 0.0
 Identities = 219/437 (50%), Positives = 308/437 (70%), Gaps = 1/437 (0%)

Query: 43  EATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMG 102
           EA K + LA PL+  SLLQY L V+S++FVGHLG+L L++AS+ASSFA+V+GFS+LLG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 103 SALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTG 162
           SAL+TLCGQAFGAK Y+++G++ QRA++ LL   +P++++W  T  IL+ LGQD EI+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 163 AGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLES 222
           AG Y RW+IP LFAY + + L R+LQ Q  V P++  S +  LL+IL+ ++LVF  GL  
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 223 KGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLE 282
            GAAL+ +IS W+ V  L +YI FS+    TW GFS EA      F+KLA+PSA+M+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 283 YWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKG 342
           +W+FE++VLL+GLLP   +  +  SI L T  ++YMI +G+  A S RV NELGAGN K 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 343 ARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGF 402
           A+LA  V +++++  G  V I  +++R+VW  L++++EEVI  VA ++P+LAL    DG 
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 403 QCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQII 462
           Q +LSG  RGCG Q L AY+NL AYY +G+P  +L AF L +G  GLW+G+I GL +Q +
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 463 ALVTVIATTNWDHEATN 479
            L+ +I  T+WD EA  
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 100.0
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK00187 464 multidrug efflux protein NorA; Provisional 99.88
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.88
PRK01766 456 multidrug efflux protein; Reviewed 99.88
PRK10189 478 MATE family multidrug exporter; Provisional 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.88
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.82
TIGR01695502 mviN integral membrane protein MviN. This model re 99.8
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.78
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.74
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.73
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.72
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.71
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.7
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.66
PRK10459492 colanic acid exporter; Provisional 99.65
PRK15099416 O-antigen translocase; Provisional 99.62
COG2244480 RfbX Membrane protein involved in the export of O- 99.56
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.41
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.25
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.21
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.97
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.47
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.43
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.25
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.12
COG4267467 Predicted membrane protein [Function unknown] 98.06
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.04
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.99
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.94
PRK01637286 hypothetical protein; Reviewed 91.58
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-56  Score=440.69  Aligned_cols=438  Identities=25%  Similarity=0.392  Sum_probs=413.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912           40 VIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR  119 (497)
Q Consensus        40 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~  119 (497)
                      .++..|+++++++|+++++++..+++++|+.++||+|++++++.+++.++..++ ..+..|++.|..+.+||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            467899999999999999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 010912          120 MLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMI  198 (497)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  198 (497)
                      ++++..++++.+.++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.++..++.++.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999887776 77999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cC-CccchhHHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCHHHHHhHHHHHHHHhHH
Q 010912          199 CSAITALLHILVCWVLVFK-SG-LESKGAALSITISNWVNVFFLAMYIKFSQA-CIKTWTGFSAEALHDIISFIKLALPS  275 (497)
Q Consensus       199 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~p~  275 (497)
                      .++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++..+++.++++ ......+..+.+++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 46 999999999999999999999999987664 22222233334779999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 010912          276 AIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAI  355 (497)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (497)
                      ++++......+...+.+++++|  ++.+|+|+++.++.++..+++.+++++.+|.+++++|+||++++++..+.+..+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  88999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHH
Q 010912          356 TEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSA  435 (497)
Q Consensus       356 ~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  435 (497)
                      +++...+++++++++++.++|++|+++.+.+..++++.++..++++++.+..+.+++.||++.+++.++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 010912          436 VLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNAL  481 (497)
Q Consensus       436 ~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (497)
                      ++++... +|..|+|+++..++.+..++..+++++++|+++..+.+
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAAA  453 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence            9998776 89999999999999999999999999998887755443

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK01637 hypothetical protein; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 9e-26
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 1e-07
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 13/370 (3%)
Query: 100 GMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEI 159
           G+  AL  +  Q  GA +   +     + ++  L VS+P+  + F T  I+  +  +  +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 160 STGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVF-KS 218
           +T    Y   +I ++ AY + Q L  F    +   P M+   I  LL+I + W+ V+ K 
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185
Query: 219 G---LESKGAALSITISNWVNVFFLAMYIKFSQ--ACIKTWTGFSAEALHDIISFIKLAL 273
           G   L   G  ++  I  W+ +  L  YI  S+  A +K +  F      ++I   +L  
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245
Query: 274 PSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSN 333
           P A  +  E   F +V LL    P      +   ++LN   +V+M  + +G A+S RV +
Sbjct: 246 PVAAALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303
Query: 334 ELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLL 393
           +LG  ++KGA +A  V +M  +       + T+L R     LY+  + V+    +++   
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363
Query: 394 ALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFF-----LHIGGMG 448
           A+   +D  Q + +G+ RG        +    +Y+ +G+P+  +           +G  G
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 423
Query: 449 LWMGIICGLS 458
            W+G I GLS
Sbjct: 424 FWLGFIIGLS 433
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-103
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  316 bits (812), Expect = e-103
 Identities = 103/435 (23%), Positives = 196/435 (45%), Gaps = 14/435 (3%)

Query: 42  EEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGM 101
           +EA+  I LA P++  S+ Q  +  +  +  G +  + +++ SIA+S   +      +G+
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGL 67

Query: 102 GSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEIST 161
             AL  +  Q  GA +   +     + ++  L VS+P+  + F T  I+  +  +  ++T
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 162 GAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSG-- 219
               Y   +I ++ AY + Q L  F    +   P M+   I  LL+I + W+ V+     
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187

Query: 220 --LESKGAALSITISNWVNVFFLAMYIKFSQAC--IKTWTGFSAEALHDIISFIKLALPS 275
             L   G  ++  I  W+ +  L  YI  S+    +K +  F      ++I   +L  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247

Query: 276 AIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNEL 335
           A  +  E   F +V LL   L +  +  +   ++LN   +V+M  + +G A+S RV ++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305

Query: 336 GAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLAL 395
           G  ++KGA +A  V +M  +       + T+L R     LY+  + V+    +++   A+
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365

Query: 396 SDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAF-----FLHIGGMGLW 450
              +D  Q + +G+ RG        +    +Y+ +G+P+  +           +G  G W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425

Query: 451 MGIICGLSMQIIALV 465
           +G I GLS   + L 
Sbjct: 426 LGFIIGLSAAALMLG 440

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.82
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 82.75
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 82.74
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.6e-49  Score=396.56  Aligned_cols=430  Identities=24%  Similarity=0.401  Sum_probs=395.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912           40 VIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR  119 (497)
Q Consensus        40 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~  119 (497)
                      .++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++++.|++|++
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~   85 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH   85 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence            467899999999999999999999999999999999999999999999998877 7788999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 010912          120 MLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMIC  199 (497)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  199 (497)
                      +.++.+++++.+.++.+++..+++.+.++++.+++.+++..+.+..|++++.++.++..+...+.+++++.|+++.+++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            99999999999999999987776778888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh-c---CCccchhHHHHHHHHHHHHHHHHHHHhhcccccc-c-cCCCCHHHHHhHHHHHHHHh
Q 010912          200 SAITALLHILVCWVLVFK-S---GLESKGAALSITISNWVNVFFLAMYIKFSQACIK-T-WTGFSAEALHDIISFIKLAL  273 (497)
Q Consensus       200 ~~~~~~~~i~~~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~~~~~  273 (497)
                      ++++.++|+++++++++. +   ++|+.|+++++++++++..++..++.+++++.+. + +.++...+++.+|+++++++
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF  245 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence            999999999999999985 3   6899999999999999999998888866543321 1 12222336788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010912          274 PSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMI  353 (497)
Q Consensus       274 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  353 (497)
                      |.++++....+...+++.++++++  ++++++|++++++.++..++..+++++..|.+++++|++|.++.++..+++.++
T Consensus       246 p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~  323 (460)
T 3mkt_A          246 PVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMT  323 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999985  889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHh
Q 010912          354 AITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIP  433 (497)
Q Consensus       354 ~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  433 (497)
                      ...+++++++++.++++++..+|.+|+++++.+..++++++++.++.+++....+.+++.||++.+++.+++..+++++|
T Consensus       324 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  403 (460)
T 3mkt_A          324 GLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLP  403 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999987899999


Q ss_pred             HHHHHHHh----hc-CCchhHHHHHHHHHHHHHHHHHHHHHhCC
Q 010912          434 SAVLFAFF----LH-IGGMGLWMGIICGLSMQIIALVTVIATTN  472 (497)
Q Consensus       434 ~~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~  472 (497)
                      +++++...    ++ +|..|+|+++.+++++..++..++++|..
T Consensus       404 l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          404 TGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999776    66 89999999999999999888776666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 82.06
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=82.06  E-value=16  Score=32.13  Aligned_cols=27  Identities=11%  Similarity=0.109  Sum_probs=13.9

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHh
Q 010912          219 GLESKGAALSITISNWVNVFFLAMYIK  245 (497)
Q Consensus       219 ~~g~~g~~~a~~i~~~~~~~~~~~~~~  245 (497)
                      ..|.....+......++..++......
T Consensus       406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         406 FFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456555555555555555555444443