Citrus Sinensis ID: 010913
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WVD6 | 601 | Probable protein arginine | yes | no | 0.857 | 0.708 | 0.558 | 1e-143 | |
| A3BMN9 | 620 | Probable protein arginine | yes | no | 0.841 | 0.674 | 0.5 | 1e-114 | |
| A2YP56 | 620 | Probable protein arginine | N/A | no | 0.841 | 0.674 | 0.495 | 1e-113 | |
| O70467 | 528 | Protein arginine N-methyl | yes | no | 0.760 | 0.715 | 0.323 | 8e-54 | |
| Q922H1 | 532 | Protein arginine N-methyl | yes | no | 0.760 | 0.710 | 0.317 | 2e-53 | |
| O60678 | 531 | Protein arginine N-methyl | yes | no | 0.788 | 0.738 | 0.325 | 2e-52 | |
| O82210 | 366 | Probable protein arginine | no | no | 0.398 | 0.540 | 0.448 | 5e-47 | |
| Q8AV13 | 369 | Protein arginine N-methyl | N/A | no | 0.484 | 0.653 | 0.380 | 1e-46 | |
| Q28F07 | 351 | Protein arginine N-methyl | no | no | 0.428 | 0.606 | 0.410 | 6e-46 | |
| Q54EF2 | 341 | Protein arginine N-methyl | yes | no | 0.404 | 0.589 | 0.449 | 7e-46 |
| >sp|Q0WVD6|ANM3_ARATH Probable protein arginine N-methyltransferase 3 OS=Arabidopsis thaliana GN=PRMT3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/480 (55%), Positives = 336/480 (70%), Gaps = 54/480 (11%)
Query: 21 EEEEEEEETEQDWGDWSEDDGGLESG--------------FLCLFCDAGYSSCDTLFEHC 66
E+EEE E DWGDW DD G+E G FLCLFCD+ + SCD LFEHC
Sbjct: 15 EDEEENYSDEGDWGDWKADDNGIEGGEEEEEDDGDDSESDFLCLFCDSHFVSCDLLFEHC 74
Query: 67 RLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYN 126
RLSH FDFH V+ EL+LDFY SFKLINYIRSQVAEN C+ + EA +
Sbjct: 75 RLSHGFDFHGVRKELKLDFYSSFKLINYIRSQVAENMCFSWKI-------------EADD 121
Query: 127 LKETKLRWDKEKYLKPFMQDDKLLYSFGEDEVDEED--NDAELMRDVMNFENISVDDGSS 184
K+ K WD+EKYLKPF Q+D LLYSF +DE DEE + E+M ++ ++S+D +
Sbjct: 122 YKDVKFPWDEEKYLKPFWQEDSLLYSFADDEEDEEVTFDREEVMEELQKLGDLSIDVEAL 181
Query: 185 KDKSATNN--CTADEIGKVAAVSTLNGHPNMENSSEKMIVNGFDSREHIGAFDSKLEDKD 242
+ S +N+ C + V ++S NG ++S++ +IVNG +D +
Sbjct: 182 GESSMSNSDKCNINGSKDVTSLSNCNGLK--QSSADDLIVNG--------------KDAE 225
Query: 243 SRVSLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVM 302
+V +L ++I+KVNE+YFGSYSSFGIHREM+SDKVRT++YR A+L+NP+L+ G+VVM
Sbjct: 226 PKVCDGRLVNRNIRKVNENYFGSYSSFGIHREMLSDKVRTEAYRDALLKNPTLLNGSVVM 285
Query: 303 DIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362
D+GCGTGILSLFAA+AGASRV+AVEASEKMA VAT+IAKDN + D + G +
Sbjct: 286 DVGCGTGILSLFAAKAGASRVVAVEASEKMAKVATKIAKDNKVFNDNEHN-------GVL 338
Query: 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422
EV MVEEL +S+QIQPHSVDVLVSEWMGYCLLYESMLSSVL+ARD+WLKPGGAILPDT
Sbjct: 339 EVAHSMVEELDKSIQIQPHSVDVLVSEWMGYCLLYESMLSSVLYARDRWLKPGGAILPDT 398
Query: 423 ATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQV 482
ATMFVAGFG+G TSLPFWE+VYGF MS +G+E+ D +PIVDV+ + DLVT +LQ
Sbjct: 399 ATMFVAGFGKGATSLPFWEDVYGFDMSSIGKEIHDDTTRLPIVDVIAERDLVTQPTLLQT 458
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Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|A3BMN9|ANM3_ORYSJ Probable protein arginine N-methyltransferase 3 OS=Oryza sativa subsp. japonica GN=PRMT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/436 (50%), Positives = 282/436 (64%), Gaps = 18/436 (4%)
Query: 47 FLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWI 106
LCLFC A + S +LF HC H FDF+ V E +DFYG KLIN++RS+VAEN+CW
Sbjct: 55 LLCLFCSARFDSESSLFSHCASEHRFDFYRVVKETGMDFYGCIKLINFVRSKVAENKCWS 114
Query: 107 CGLTCQSNQDLQNHLH--EAYNLKETKLRWDKEKYLKPFMQDDKLLYSFGEDEVDEEDND 164
CG SN +L HLH E L E K+ W + YLKPF++DD LL+S + D+ED+
Sbjct: 115 CGQVFSSNSELCGHLHALEIPQL-EGKVPWGDDVYLKPFLEDDSLLHSLSVFDDDDEDDC 173
Query: 165 AELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLNGHPNMENSSEKMIVNG 224
M K + N + E + S +N ++ + E+
Sbjct: 174 GMPME---------------KGGCSAGNGSLAETCESNLKSIINDGSDVIDRFERTCTIE 218
Query: 225 FDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDS 284
E G+ + DK +++ +A+ IK V+ESYFGSYSSFGIHREM+ DKVRT++
Sbjct: 219 STDGECSGSLAQEPSDKQLKIARASAAARGIKSVDESYFGSYSSFGIHREMLGDKVRTEA 278
Query: 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
YR A+L NPSLM GA V+D+GCGTGILSLFAA+AGASRVIAV+ S KM +VAT++AK N
Sbjct: 279 YRDALLGNPSLMNGATVLDVGCGTGILSLFAAKAGASRVIAVDGSAKMVSVATEVAKSNG 338
Query: 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSV 404
F +D + + VV EEL +Q+ + DVLVSEWMGYCLLYESMLSSV
Sbjct: 339 FLYDENMEMQQKRDTQVITVVHTKAEELNHKIQVPSNKFDVLVSEWMGYCLLYESMLSSV 398
Query: 405 LFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPI 464
L+ARD +LKPGGAILPDTAT+F AGFG+GGTSLPFWENVYGF MSC+G+EV ++A P+
Sbjct: 399 LYARDHFLKPGGAILPDTATIFGAGFGKGGTSLPFWENVYGFDMSCIGKEVTGNSARFPV 458
Query: 465 VDVVDDHDLVTDSVVL 480
VD++ D+VT++ VL
Sbjct: 459 VDILASEDIVTETAVL 474
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Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2YP56|ANM3_ORYSI Probable protein arginine N-methyltransferase 3 OS=Oryza sativa subsp. indica GN=PRMT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/436 (49%), Positives = 280/436 (64%), Gaps = 18/436 (4%)
Query: 47 FLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWI 106
LCLFC A + S +LF HC H FDF+ V E +DFYG KLIN++RS+VAEN+CW
Sbjct: 55 LLCLFCSARFDSESSLFSHCASEHRFDFYRVVKETGMDFYGCIKLINFVRSKVAENKCWS 114
Query: 107 CGLTCQSNQDLQNHLH--EAYNLKETKLRWDKEKYLKPFMQDDKLLYSFGEDEVDEEDND 164
CG SN +L HLH E L E K+ W + YLKPF++DD LL+S + D+ED+
Sbjct: 115 CGQVFSSNSELCGHLHALEIPQL-EGKVPWGDDVYLKPFLEDDSLLHSLSVFDDDDEDDC 173
Query: 165 AELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLNGHPNMENSSEKMIVNG 224
M K + N + E + S +N ++ + E+
Sbjct: 174 GMPME---------------KGGCSAGNGSLAETCESNLKSIINDGSDVIDRFERTCTIE 218
Query: 225 FDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDS 284
E G+ + DK +++ +A+ I V+ESYFGSYSSFGIHREM+ DKVRT++
Sbjct: 219 STDGECSGSLAQEPSDKQLKIARASAAARGINSVDESYFGSYSSFGIHREMLGDKVRTEA 278
Query: 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
YR A+L NPSLM GA V+D+GCGTGILSLFAA+AGASRVIAV+ S KM +VAT++ K N
Sbjct: 279 YRDALLGNPSLMNGATVLDVGCGTGILSLFAAKAGASRVIAVDGSAKMVSVATEVTKSNG 338
Query: 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSV 404
F +D + + VV EEL +Q+ + DVLVSEWMGYCLLYESMLSSV
Sbjct: 339 FLYDENMEMQQKRDTQVITVVHTKAEELNHKIQVPSNKFDVLVSEWMGYCLLYESMLSSV 398
Query: 405 LFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPI 464
L+ARD +LKPGGAILPDTAT+F AGFG+GGTSLPFWENVYGF MSC+G+EV ++A P+
Sbjct: 399 LYARDHFLKPGGAILPDTATIFGAGFGKGGTSLPFWENVYGFDMSCIGKEVTGNSARFPV 458
Query: 465 VDVVDDHDLVTDSVVL 480
VD++ D+VT++ VL
Sbjct: 459 VDILASEDIVTETAVL 474
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Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O70467|ANM3_RAT Protein arginine N-methyltransferase 3 OS=Rattus norvegicus GN=Prmt3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 148/457 (32%), Positives = 228/457 (49%), Gaps = 79/457 (17%)
Query: 32 DWGD---WSEDDGGLESG-----FLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRL 83
D GD W ++D E CLFCD + S + F HC+L H F+ + + L
Sbjct: 23 DSGDDAGWEDEDADAEPAQGRQHTPCLFCDRLFRSAEETFSHCKLEHQFNIDGMVHKHGL 82
Query: 84 DFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPF 143
+FYG KLIN+IR L+N E N + WDK++YLKP
Sbjct: 83 EFYGYIKLINFIR--------------------LKNPTVEYMNSIYNPVPWDKDEYLKPV 122
Query: 144 MQDDKLLYSFGEDEVDEEDNDAELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAA 203
++DD LL + D ED E + + N ++ S+ +K A A
Sbjct: 123 LEDDLLL------QFDVEDL-YEPVSAPFTYPNGLSENTSAVEKLKLMEARALSAEAALA 175
Query: 204 VSTLNGHPNMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYF 263
+ + M+ ++ ++N D R + D+++ + +
Sbjct: 176 RAREDLQ-KMKQFAQDFVMN-----------------VDVRTCSSTTTIADLQEDEDGVY 217
Query: 264 -GSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASR 322
SY +GIH EM+ DKVRT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA +
Sbjct: 218 FSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 277
Query: 323 VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHS 382
VIAV+ SE + A I + N + +++G +EE+ ++
Sbjct: 278 VIAVDQSEILYQ-AMDIIRLNKL-------------EDTIVLIKGKIEEVSLPVE----K 319
Query: 383 VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM---FVAGFGRGGTSLPF 439
VDV++SEWMGY LL+ESML SVL+A+ ++L GG++ PD T+ V+ + + F
Sbjct: 320 VDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAF 379
Query: 440 WENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTD 476
W++VYGF MSC+ + V+ +A +V+VVD L++D
Sbjct: 380 WDDVYGFNMSCMKKAVIPEA----VVEVVDHKTLISD 412
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Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q922H1|ANM3_MOUSE Protein arginine N-methyltransferase 3 OS=Mus musculus GN=Prmt3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 228/457 (49%), Gaps = 79/457 (17%)
Query: 32 DWGD---WSEDDGGLESGF-----LCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRL 83
D GD W ++D E CLFCD ++S + F HC+L H F+ S+ + L
Sbjct: 23 DSGDDAGWEDEDADTEPAHGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGL 82
Query: 84 DFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPF 143
+FYG KLIN+IR L+N E N + W+K++YLKP
Sbjct: 83 EFYGYIKLINFIR--------------------LKNPTVEYMNSIYNPVPWEKDEYLKPV 122
Query: 144 MQDDKLLYSFGEDEVDEEDNDAELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAA 203
++DD LL + D ED E + ++ N + + +S + + + A
Sbjct: 123 LEDDLLL------QFDVEDL-YEPVSTPFSYPN-GLSESASVVEKLKHMEARALSAEAAL 174
Query: 204 VSTLNGHPNMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYF 263
M+ ++ ++N D R + D+++ + +
Sbjct: 175 ARAREDLQKMKQFAQDFVMN-----------------VDVRTCSSTTTIADLQEDEDGVY 217
Query: 264 GS-YSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASR 322
S Y +GIH EM+ DKVRT+SYR I +NP + K VV+D+GCGTGILS+FAA+ GA +
Sbjct: 218 FSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKVGAKK 277
Query: 323 VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHS 382
VIAV+ SE + A I + N + +++G +EE+ ++
Sbjct: 278 VIAVDQSEILYQ-AMDIIRLNKL-------------EDTIVLIKGKIEEVSLPVE----K 319
Query: 383 VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM---FVAGFGRGGTSLPF 439
VDV++SEWMGY LL+ESML SVL+A+ ++L GG++ PD T+ V+ + + F
Sbjct: 320 VDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAF 379
Query: 440 WENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTD 476
W++VYGF MSC+ + V+ +A +V+VVD L++D
Sbjct: 380 WDDVYGFNMSCMKKAVIPEA----VVEVVDHKTLISD 412
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O60678|ANM3_HUMAN Protein arginine N-methyltransferase 3 OS=Homo sapiens GN=PRMT3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 238/467 (50%), Gaps = 75/467 (16%)
Query: 18 ENHEEEEEEEET--EQDWGDWSEDDGGLESG---FLCLFCDAGYSSCDTLFEHCRLSHCF 72
EN E+ E ++ E W D EDD L G CLFC+ ++S + F HC+ H F
Sbjct: 16 ENEEDLPELSDSGDEAAWED--EDDADLPHGKQQTPCLFCNRLFTSAEETFSHCKSEHQF 73
Query: 73 DFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKL 132
+ S+ + L+FYG KLIN+IR L+N E N +
Sbjct: 74 NIDSMVHKHGLEFYGYIKLINFIR--------------------LKNPTVEYMNSIYNPV 113
Query: 133 RWDKEKYLKPFMQDDKLLYSFGEDEVDEEDNDAELMRDVMNFENISVDDGSSKDKSATNN 192
W+KE+YLKP ++DD LL + D ED +E +SV S + + N
Sbjct: 114 PWEKEEYLKPVLEDDLLL------QFDVED----------LYEPVSV-PFSYPNGLSENT 156
Query: 193 CTADEIGKVAAVSTLNGHPNMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSA 252
+++ + A + + + F +++ + D + S S++
Sbjct: 157 SVVEKLKHMEARALSAEAALARAREDLQKMKQF-AQDFVMHTD--VRTCSSSTSVIADLQ 213
Query: 253 KDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILS 312
+D V S +G Y GIH EM+ DK+RT+SYR I +NP + K VV+D+GCGTGILS
Sbjct: 214 EDEDGVYFSSYGHY---GIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILS 270
Query: 313 LFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372
+FAA+AGA +V+ V+ SE + A I + N E I +++G +EE+
Sbjct: 271 MFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKL-------EDTIT------LIKGKIEEV 316
Query: 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM---FVAG 429
+ VDV++SEWMGY LL+ESML SVL+A++++L GG++ PD T+ V+
Sbjct: 317 ----HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSD 372
Query: 430 FGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTD 476
+ + FW++VYGF MSC+ + V+ +A +V+V+D L+++
Sbjct: 373 VNKHADRIAFWDDVYGFKMSCMKKAVIPEA----VVEVLDPKTLISE 415
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Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O82210|ANM12_ARATH Probable protein arginine N-methyltransferase 1.2 OS=Arabidopsis thaliana GN=PRMT12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 141/223 (63%), Gaps = 25/223 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SYS FGIH EM+ D VRT SY+ I +N L+K +V+D+G GTGILSLF A+AGA+
Sbjct: 48 YFDSYSHFGIHEEMLKDVVRTKSYQDVIYKNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 107
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
V AVE S+ MA A +I K N F + + V++G +EE+ ++
Sbjct: 108 HVYAVECSQ-MADTAKEIVKSNGF-------------SDVITVLKGKIEEI----ELPVP 149
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRG---GTSLP 438
VDV++SEWMGY LLYE+ML +VL+AR++WL GG +LPD A+++V +
Sbjct: 150 KVDVIISEWMGYFLLYENMLDTVLYARNKWLVDGGIVLPDKASLYVTAIEDAHYKDDKVE 209
Query: 439 FWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQ 481
FW++VYGF MSC+ R + + P+VD VD + +VTDS +L+
Sbjct: 210 FWDDVYGFDMSCIKRRAITE----PLVDTVDGNQIVTDSKLLK 248
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 158/273 (57%), Gaps = 32/273 (11%)
Query: 212 NMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSYSSFGI 271
NMEN K+ NG R I +S + + + +++KD YF SY+ FGI
Sbjct: 8 NMENFVAKL-ANGMSLRTPIEDVNSAPPEGGVKTNAEDMTSKDY------YFDSYAHFGI 60
Query: 272 HREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEK 331
H EM+ D+VRT +YR ++ N L K VV+D+G GTGIL +FAA+AGA +VI +E S
Sbjct: 61 HEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSS- 119
Query: 332 MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM 391
++ A +I K N + +++G VEE+ ++ VD+++SEWM
Sbjct: 120 ISDYAIKIVKANKL-------------DHVVTIIKGKVEEV----ELPVEKVDIIISEWM 162
Query: 392 GYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF---GRGGTSLPFWENVYGFTM 448
GYCL YESML++V++ARD+WL P G I PD AT+++ + +WENVYGF M
Sbjct: 163 GYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIEDRQYKDYKIHWWENVYGFDM 222
Query: 449 SCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQ 481
SC+ +++ P+VDVVD LV+++ +++
Sbjct: 223 SCIKDVAIKE----PLVDVVDPKQLVSNACLIK 251
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q28F07|ANM1_XENTR Protein arginine N-methyltransferase 1 OS=Xenopus tropicalis GN=prmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 26/239 (10%)
Query: 246 SLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIG 305
S +K +A+D+ + YF SY+ FGIH EM+ D+VRT +YR ++ N L K VV+D+G
Sbjct: 18 SSVKPNAEDMTS-KDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVG 76
Query: 306 CGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365
GTGIL +FAA+AGA +VI +E S ++ A +I K N + ++
Sbjct: 77 SGTGILCMFAAKAGAKKVIGIECSS-ISDYAIKIVKANKL-------------DHVVTII 122
Query: 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425
+G VEE+ ++ VD+++SEWMGYCL YESML++V++ARD+WL P G I PD AT+
Sbjct: 123 KGKVEEV----ELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATL 178
Query: 426 FVAGF---GRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQ 481
+V + +WENVYGF MSC+ +++ P+VDVVD LVT++ +++
Sbjct: 179 YVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKE----PLVDVVDPKQLVTNACLIK 233
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice (By similarity). Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q54EF2|ANM1_DICDI Protein arginine N-methyltransferase 1 OS=Dictyostelium discoideum GN=prmt1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 144/227 (63%), Gaps = 26/227 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SYS FGIH EM+ D+VRT +YR+AI+ N L +G VV+D+GCGTGIL +FAAQAGA
Sbjct: 23 YFDSYSHFGIHEEMLKDEVRTLAYRRAIINNRKLFEGKVVLDVGCGTGILCMFAAQAGAK 82
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
VI V+ SE M +A +I N+F D+ + +++G +EE+ +
Sbjct: 83 MVIGVDNSE-MLPIAQKIITANNF--DKT-----------ITLIKGKMEEV----VLPVD 124
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF---GRGGTSLP 438
VD+++SEWMGY +LYE ML +VL+ARD++L PGG ILPD A++++ +
Sbjct: 125 KVDIIISEWMGYFMLYEGMLDTVLYARDKYLVPGGVILPDKASLYITAIEDQDYKEEKIN 184
Query: 439 FWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVT-DSVVLQVSV 484
+W NVYGF MSC+ RE+ A P+VDVV + +VT D +L V +
Sbjct: 185 YWNNVYGFDMSCI-REI---ALKEPLVDVVQPNMIVTNDCCILTVDI 227
|
Arginine methyltransferase that methylates the guanidino nitrogens of arginyl residues present in proteins such as ribonucleoproteins and histones. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | ||||||
| 224057248 | 613 | predicted protein [Populus trichocarpa] | 0.911 | 0.738 | 0.602 | 1e-158 | |
| 296087849 | 603 | unnamed protein product [Vitis vinifera] | 0.845 | 0.696 | 0.638 | 1e-158 | |
| 255543919 | 596 | protein arginine n-methyltransferase, pu | 0.802 | 0.669 | 0.623 | 1e-154 | |
| 359487168 | 602 | PREDICTED: probable protein arginine N-m | 0.843 | 0.696 | 0.636 | 1e-154 | |
| 356508298 | 613 | PREDICTED: probable protein arginine N-m | 0.869 | 0.704 | 0.609 | 1e-148 | |
| 356539565 | 623 | PREDICTED: probable protein arginine N-m | 0.847 | 0.675 | 0.606 | 1e-146 | |
| 449487114 | 622 | PREDICTED: probable protein arginine N-m | 0.861 | 0.688 | 0.583 | 1e-146 | |
| 449449254 | 624 | PREDICTED: probable protein arginine N-m | 0.861 | 0.685 | 0.583 | 1e-146 | |
| 145338411 | 601 | protein arginine N-methyltransferase 3 [ | 0.857 | 0.708 | 0.558 | 1e-141 | |
| 357456355 | 717 | Protein arginine methyltransferase [Medi | 0.883 | 0.612 | 0.543 | 1e-141 |
| >gi|224057248|ref|XP_002299193.1| predicted protein [Populus trichocarpa] gi|222846451|gb|EEE83998.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 295/490 (60%), Positives = 355/490 (72%), Gaps = 37/490 (7%)
Query: 1 MGSNNKPETEETRKRI---EENHEEEEEEEETEQDWGDWSEDDGGLESGFLCLFCDAGYS 57
M SN++ E + K + E + E EEE E+ + D D G + F+CLF D+ +S
Sbjct: 1 MASNDQTELNKAEKSVIEQESDSEFEEENEDWDDWGEDDDNDGGENDKPFMCLFLDSQFS 60
Query: 58 SCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDL 117
SC LFEHCRL+H FDF ++ EL LDFYGSFKLINY+RSQVAENRCW CGL CQS+QD+
Sbjct: 61 SCSELFEHCRLAHKFDFDGIRKELGLDFYGSFKLINYVRSQVAENRCWSCGLACQSHQDI 120
Query: 118 QNHLHEAYNLKETKLRWDKEKYLKPFMQDDKLLYSFGEDEVDEE-----DNDAELMRDVM 172
QNH WD +KYLKPFMQDD LLYSF EDE E+ D+ ELMRD+
Sbjct: 121 QNHP-----------LWDDDKYLKPFMQDDPLLYSFNEDEEGEDNHMTLDDQEELMRDLR 169
Query: 173 NFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLNGHPNMENSSEKMIVNGFDSREHIG 232
N + + ++D + +KSA G ST + H N+ NSS+ +VNG DS E +G
Sbjct: 170 NIDEMCIEDTDTLEKSAHGYGVN---GAKEVASTSSSHENVGNSSKMEMVNG-DSEERVG 225
Query: 233 AFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILEN 292
+ D K DK S+VSL+ L KDIKK N +YFG+YSSFGIHREMISDKVR D+Y QAIL+N
Sbjct: 226 SSDGKPSDKHSKVSLMNLVDKDIKKANANYFGAYSSFGIHREMISDKVRMDAYSQAILKN 285
Query: 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQS 352
PSLM GAVVMD+GCGTGILSLFAA+ GASRVIA+EASEKMA+VATQ+
Sbjct: 286 PSLMTGAVVMDVGCGTGILSLFAAKTGASRVIAIEASEKMASVATQVC------------ 333
Query: 353 EGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL 412
N G MEVVQGMVEE+ +S+QI+PHSVDVL+SEWMGYCLLYE+MLSSVLFARD+WL
Sbjct: 334 --NNQYTGVMEVVQGMVEEIDKSIQIKPHSVDVLLSEWMGYCLLYETMLSSVLFARDKWL 391
Query: 413 KPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHD 472
KPGGAILPDTA+++ AGFG+GGTSLPFWE VYGF MSCVG+E+VQDAA PIVDVVD+ D
Sbjct: 392 KPGGAILPDTASIYAAGFGKGGTSLPFWEEVYGFNMSCVGKELVQDAAKFPIVDVVDEKD 451
Query: 473 LVTDSVVLQV 482
LVTD+V+LQ
Sbjct: 452 LVTDAVLLQT 461
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087849|emb|CBI35105.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 293/459 (63%), Positives = 340/459 (74%), Gaps = 39/459 (8%)
Query: 33 WGDWSEDDGGLESG---FLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSF 89
WGDW DD E FLCLFCD+ YSSCD LFEHC H FDF S++ L LDFYGSF
Sbjct: 22 WGDWGADDNEEEESDPDFLCLFCDSKYSSCDALFEHCSSIHHFDFLSIRETLSLDFYGSF 81
Query: 90 KLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKL 149
KLIN++RS+VAENRCW CGL CQSNQDLQ HLHE N +E KL D +KYL PFMQ+D L
Sbjct: 82 KLINFVRSRVAENRCWSCGLVCQSNQDLQTHLHETANFEEIKLHLDDDKYLNPFMQEDPL 141
Query: 150 LYSFGEDEVDEEDNDA------ELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAA 203
LYSF +DE + ED+DA E+MRD+ F I +DDG D A++
Sbjct: 142 LYSFSQDE-EGEDDDATALEKEEIMRDLREFGEICIDDGDIIDALASD------------ 188
Query: 204 VSTLNGHPNMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYF 263
TLN E+ E EH+G+F K +DK RVS + +K+IK VNE+YF
Sbjct: 189 FDTLN-----EDRRE----------EHVGSFKRKPKDKHLRVSFANVVSKEIKNVNENYF 233
Query: 264 GSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRV 323
G+YSSFGIHREMISDKVR D+YRQAIL NPSLMKGA V+D+GCGTGILSLFAAQAGASRV
Sbjct: 234 GAYSSFGIHREMISDKVRMDAYRQAILNNPSLMKGATVLDVGCGTGILSLFAAQAGASRV 293
Query: 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSV 383
IAVEASEKMA+VATQ+AKDN + GN + G ++VVQGMVEEL +S I+ HS+
Sbjct: 294 IAVEASEKMASVATQVAKDNGLLCSASPNAGNNHYTGVIKVVQGMVEELDKS--IESHSI 351
Query: 384 DVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENV 443
DVL+SEWMGYCLLYESMLSSVLFARD WLKPGGAILPDTAT+FVAGFGRGGTS+PFWENV
Sbjct: 352 DVLLSEWMGYCLLYESMLSSVLFARDHWLKPGGAILPDTATIFVAGFGRGGTSIPFWENV 411
Query: 444 YGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQV 482
YGF MSCVG+E+V+DAA PIVD+VD HD+VTD+ VLQ
Sbjct: 412 YGFNMSCVGKELVEDAAQTPIVDIVDSHDIVTDAAVLQT 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543919|ref|XP_002513022.1| protein arginine n-methyltransferase, putative [Ricinus communis] gi|223548033|gb|EEF49525.1| protein arginine n-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/443 (62%), Positives = 327/443 (73%), Gaps = 44/443 (9%)
Query: 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENR 103
+S FLCLFCD+ YSSC L +HC +H FD + ++ EL LDFYGSFK INY+RS VAENR
Sbjct: 52 DSNFLCLFCDSKYSSCIELLDHCGFTHKFDLNGIRKELCLDFYGSFKFINYVRSMVAENR 111
Query: 104 CWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKLLYSFGEDEVDEED- 162
CW CG+TC+SN+ LQ HLH+A NLK+ KL WD ++YLKPF+QDD LLYSF DE EED
Sbjct: 112 CWSCGVTCKSNRYLQCHLHDAVNLKDIKLFWDDDRYLKPFLQDDSLLYSFIGDEESEEDF 171
Query: 163 ----NDAELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLNGHPNMENSSE 218
+ ELM+D+ N E I ++D D+ G+V+A S+
Sbjct: 172 ATQVDKEELMKDLRNIEEIRIED--------------DQTGQVSAAI-----------SD 206
Query: 219 KMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSYSSFGIHREMISD 278
K NG + L L+ +IKKVNE+YFG+YSSFGIHREMISD
Sbjct: 207 KFEGNGIKEVASVSK------------GPLNLAVTEIKKVNENYFGAYSSFGIHREMISD 254
Query: 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
KVR D+YRQAIL+NPSL+ GAVVMD+GCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ
Sbjct: 255 KVRMDAYRQAILKNPSLLTGAVVMDVGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 314
Query: 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE 398
IAKDN W Q EGN G MEVVQGMVEEL +QI+PHSVDVLVSEWMGYCLLYE
Sbjct: 315 IAKDNGLWHSNTQGEGNSKCTGVMEVVQGMVEEL--DIQIEPHSVDVLVSEWMGYCLLYE 372
Query: 399 SMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQD 458
SMLSSVL+ARD+WL+PGGAILPDTAT++ AGFG+GGTSLPFWE+VYG M+C+G+E+VQD
Sbjct: 373 SMLSSVLYARDKWLRPGGAILPDTATIYAAGFGKGGTSLPFWEDVYGLNMTCIGKELVQD 432
Query: 459 AAGIPIVDVVDDHDLVTDSVVLQ 481
AA IPI+D+V+D DLVTD+ VLQ
Sbjct: 433 AAQIPIIDIVNDCDLVTDAAVLQ 455
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487168|ref|XP_002263954.2| PREDICTED: probable protein arginine N-methyltransferase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/459 (63%), Positives = 337/459 (73%), Gaps = 40/459 (8%)
Query: 33 WGDWSEDDGGLESG---FLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSF 89
WGDW DD E FLCLFCD+ YSSCD LFEHC H FDF S++ L LDFYGSF
Sbjct: 22 WGDWGADDNEEEESDPDFLCLFCDSKYSSCDALFEHCSSIHHFDFLSIRETLSLDFYGSF 81
Query: 90 KLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKL 149
KLIN++RS+VAENRCW CGL CQSNQDLQ HLHE N +E KL D +KYL PFMQ+D L
Sbjct: 82 KLINFVRSRVAENRCWSCGLVCQSNQDLQTHLHETANFEEIKLHLDDDKYLNPFMQEDPL 141
Query: 150 LYSFGEDEVDEEDNDA------ELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAA 203
LYSF +DE + ED+DA E+MRD+ F I +DDG D A++ T +E + A
Sbjct: 142 LYSFSQDE-EGEDDDATALEKEEIMRDLREFGEICIDDGDIIDALASDFDTLNEDRREGA 200
Query: 204 VSTLNGHPNMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYF 263
S NG+ MEN SEK I + IG +IK VNE+YF
Sbjct: 201 -SASNGYYGMENISEKEIGSC------IG---------------------EIKNVNENYF 232
Query: 264 GSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRV 323
G+YSSFGIHREMISDKVR D+YRQAIL NPSLMKGA V+D+GCGTGILSLFAAQAGASRV
Sbjct: 233 GAYSSFGIHREMISDKVRMDAYRQAILNNPSLMKGATVLDVGCGTGILSLFAAQAGASRV 292
Query: 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSV 383
IAVEASEKMA+VATQ+AKDN + GN + G ++VVQGMVEEL +S I+ HS+
Sbjct: 293 IAVEASEKMASVATQVAKDNGLLCSASPNAGNNHYTGVIKVVQGMVEELDKS--IESHSI 350
Query: 384 DVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENV 443
DVL+SEWMGYCLLYESMLSSVLFARD WLKPGGAILPDTAT+FVAGFGRGGTS+PFWENV
Sbjct: 351 DVLLSEWMGYCLLYESMLSSVLFARDHWLKPGGAILPDTATIFVAGFGRGGTSIPFWENV 410
Query: 444 YGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQV 482
YGF MSCVG+E+V+DAA PIVD+VD HD+VTD+ VLQ
Sbjct: 411 YGFNMSCVGKELVEDAAQTPIVDIVDSHDIVTDAAVLQT 449
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508298|ref|XP_003522895.1| PREDICTED: probable protein arginine N-methyltransferase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 276/453 (60%), Positives = 334/453 (73%), Gaps = 21/453 (4%)
Query: 38 EDDGGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRS 97
ED+G ES F+CLFCD+ YSSC +LF+HC H F FH+++T L LDFY SFKLIN+IRS
Sbjct: 29 EDEGERESEFVCLFCDSRYSSCGSLFDHCASLHRFVFHTIRTTLSLDFYASFKLINFIRS 88
Query: 98 QVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKLLYSFGEDE 157
+VAEN CW CGLTCQSN DLQNHLH+ + E K W+ ++YL PFMQDD LLYSFG+ +
Sbjct: 89 RVAENICWSCGLTCQSNCDLQNHLHDVVDFNEIKTLWNDDRYLIPFMQDDSLLYSFGDCD 148
Query: 158 VDEEDN-----DAELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLNGHPN 212
D ED D +L++D+MN E S+ D K + EI V+ N H N
Sbjct: 149 EDGEDEHITRIDEDLIKDLMNIEE-SIHDDQDLVKKVVVDDDKHEIDSVS-----NNHLN 202
Query: 213 MENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLS----AKDIKKVNESYFGSYSS 268
+SS+K+I NG DS+ H+ DKD L+ S AK IKK+NESYFGSYSS
Sbjct: 203 KASSSKKLI-NGKDSKGHV-----LCSDKDPEGHLMVNSQNHIAKHIKKINESYFGSYSS 256
Query: 269 FGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEA 328
FGIHREM+SDKVR D+Y QAIL+NPSL+ AVVMD+GCGTGILSLF+A+AGASRVIAVEA
Sbjct: 257 FGIHREMLSDKVRMDAYGQAILKNPSLLNSAVVMDVGCGTGILSLFSAKAGASRVIAVEA 316
Query: 329 SEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVS 388
S KMAAVA+Q+AKDN + Q+ + G +EVV GMVEE+ +++++QP SVDVL+S
Sbjct: 317 SAKMAAVASQVAKDNGLLLSKSQNGVDGLQKGVIEVVHGMVEEIDKTVELQPRSVDVLLS 376
Query: 389 EWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTM 448
EWMGYCLLYESML SVL+ARD+WLKPGGAILPDTAT+FVAGFG+G TSLPFWENV F M
Sbjct: 377 EWMGYCLLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGATSLPFWENVCDFDM 436
Query: 449 SCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQ 481
SC+G E+V DAA IPIVDVVD DLVT S +LQ
Sbjct: 437 SCIGNELVIDAARIPIVDVVDSQDLVTCSAILQ 469
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539565|ref|XP_003538268.1| PREDICTED: probable protein arginine N-methyltransferase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 271/447 (60%), Positives = 334/447 (74%), Gaps = 26/447 (5%)
Query: 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENR 103
+S F+CLFC++ YSSC +LF+HC H FDFH+++T L LDFY SFKLIN+IRS VAENR
Sbjct: 50 DSEFVCLFCESRYSSCGSLFDHCASLHRFDFHAIRTTLSLDFYASFKLINFIRSLVAENR 109
Query: 104 CWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKLLYSFGEDEVDEEDN 163
CW CGLTCQSN+DLQNHLH+ + E K W+ ++YL PFM+DD LLYSFG+ + + ED
Sbjct: 110 CWSCGLTCQSNRDLQNHLHDLVDFNEIKTLWNDDRYLIPFMEDDSLLYSFGDCDEEGEDE 169
Query: 164 -----DAELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLNGHPNMENSSE 218
D +L++D+MN E DD +K + D+ ++A+VS N H N +SS+
Sbjct: 170 QITPIDEDLIKDLMNIEESIHDDQDVVNKMVVD----DDKHEIASVS--NDHLNKASSSK 223
Query: 219 KMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLS----AKDIKKVNESYFGSYSSFGIHRE 274
++I NG D DKD L+ S AK IKK+NESYFGSYSSFGIHRE
Sbjct: 224 ELI-NGKD----------LCCDKDPEGHLMVNSQNHIAKHIKKINESYFGSYSSFGIHRE 272
Query: 275 MISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAA 334
M+SDKVR D+Y QAIL+NPSL+ AVVMD+GCGTGILSLF+A+AGASRVIAVEAS KMAA
Sbjct: 273 MLSDKVRMDAYGQAILKNPSLLNSAVVMDVGCGTGILSLFSAKAGASRVIAVEASAKMAA 332
Query: 335 VATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYC 394
VA+QIAKDN + Q+ + G +EVV GMVEE+ +++++QPHSVDVL+SEWMGYC
Sbjct: 333 VASQIAKDNGLLLSKSQNGVDGFQKGVIEVVHGMVEEIDKTVEVQPHSVDVLLSEWMGYC 392
Query: 395 LLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGRE 454
LLYESML SVL+ARD+WLKPGGAILPDTAT+FVAGFG+G TSLPFWENV F MSC+G+E
Sbjct: 393 LLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGATSLPFWENVCDFDMSCIGKE 452
Query: 455 VVQDAAGIPIVDVVDDHDLVTDSVVLQ 481
+V DAA IPIVDVVD DLVT S +LQ
Sbjct: 453 LVIDAARIPIVDVVDSQDLVTCSAILQ 479
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487114|ref|XP_004157501.1| PREDICTED: probable protein arginine N-methyltransferase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 266/456 (58%), Positives = 330/456 (72%), Gaps = 28/456 (6%)
Query: 33 WGDWSEDDG----GLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGS 88
W DW+ D+ +S FLCLFC++ Y+ C+ LF HC H FDFHS++ +L LDFYGS
Sbjct: 38 WDDWNADEEEGEEAFDSNFLCLFCNSKYNDCNVLFNHCNSVHYFDFHSIRKDLGLDFYGS 97
Query: 89 FKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDK 148
FK+INY+RSQVAENRCW CGL+CQSN DLQ+HLH+ NL + K WD +KYLKPF Q+D
Sbjct: 98 FKIINYVRSQVAENRCWSCGLSCQSNLDLQHHLHKILNLNDIKALWDDDKYLKPFKQNDP 157
Query: 149 LLYSFGEDEVDEEDNDAELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLN 208
LLYSF EDE D+++ R+ + F + K+ +CT+ G + A S+L
Sbjct: 158 LLYSFAEDEEDDDET----TRENLPFH------ANQNQKNGMEDCTSASHGYLNAASSLE 207
Query: 209 GHPNMENSSE--KMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSY 266
+EN+ E K + +D + ED +++ DIK NE+YFGSY
Sbjct: 208 A--KIENTVETTKTLELKYDVQ----------EDNQLKIARQIFDRNDIKNANENYFGSY 255
Query: 267 SSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAV 326
SFGIHREM+SDKVR ++Y +AILENPSL + A VMD+GCGTGILSLFAA+AGASRVIAV
Sbjct: 256 GSFGIHREMLSDKVRMEAYMKAILENPSLFQNAAVMDVGCGTGILSLFAAKAGASRVIAV 315
Query: 327 EASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVL 386
EASEKMAAVATQI +DN W +R Q+ ++G +EVV GMVEEL +S++IQPHSVDVL
Sbjct: 316 EASEKMAAVATQIVEDNGLWRNRKQTRDCGVSSGIIEVVHGMVEELDKSIEIQPHSVDVL 375
Query: 387 VSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGF 446
+SEWMGYCLLYE+MLSSVLFARD+WLKPGGAILPDTAT+ VAGFG GGTSLPFWENVYGF
Sbjct: 376 LSEWMGYCLLYETMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGF 435
Query: 447 TMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQV 482
MSCVG+E+V+DAA PIVD+VD +DLVT +L
Sbjct: 436 RMSCVGKELVKDAAKAPIVDIVDANDLVTSPAILHT 471
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449254|ref|XP_004142380.1| PREDICTED: probable protein arginine N-methyltransferase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 266/456 (58%), Positives = 330/456 (72%), Gaps = 28/456 (6%)
Query: 33 WGDWSEDDG----GLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGS 88
W DW+ D+ +S FLCLFC++ Y+ C+ LF HC H FDFHS++ +L LDFYGS
Sbjct: 40 WDDWNADEEEGEEAFDSNFLCLFCNSKYNDCNVLFNHCNSVHYFDFHSIRKDLGLDFYGS 99
Query: 89 FKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDK 148
FK+INY+RSQVAENRCW CGL+CQSN DLQ+HLH+ NL + K WD +KYLKPF Q+D
Sbjct: 100 FKIINYVRSQVAENRCWSCGLSCQSNLDLQHHLHKILNLNDIKALWDDDKYLKPFKQNDP 159
Query: 149 LLYSFGEDEVDEEDNDAELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLN 208
LLYSF EDE D+++ R+ + F + K+ +CT+ G + A S+L
Sbjct: 160 LLYSFAEDEEDDDET----TRENLPFH------ANQNQKNGMEDCTSASHGYLNAASSLE 209
Query: 209 GHPNMENSSE--KMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSY 266
+EN+ E K + +D +E D +++ DIK NE+YFGSY
Sbjct: 210 A--KIENTVETTKTLELKYDVQE----------DNQLKIARQIFDRNDIKNANENYFGSY 257
Query: 267 SSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAV 326
SFGIHREM+SDKVR ++Y +AILENPSL + A VMD+GCGTGILSLFAA+AGASRVIAV
Sbjct: 258 GSFGIHREMLSDKVRMEAYMKAILENPSLFQNAAVMDVGCGTGILSLFAAKAGASRVIAV 317
Query: 327 EASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVL 386
EASEKMAAVATQI +DN W +R Q+ ++G +EVV GMVEEL +S++IQPHSVDVL
Sbjct: 318 EASEKMAAVATQIVEDNGLWRNRKQTRECGVSSGIIEVVHGMVEELDKSIEIQPHSVDVL 377
Query: 387 VSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGF 446
+SEWMGYCLLYE+MLSSVLFARD+WLKPGGAILPDTAT+ VAGFG GGTSLPFWENVYGF
Sbjct: 378 LSEWMGYCLLYETMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGF 437
Query: 447 TMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQV 482
MSCVG+E+V+DAA PIVD+VD +DLVT +L
Sbjct: 438 RMSCVGKELVKDAAKAPIVDIVDANDLVTSPAILHT 473
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145338411|ref|NP_187835.2| protein arginine N-methyltransferase 3 [Arabidopsis thaliana] gi|122230175|sp|Q0WVD6.1|ANM3_ARATH RecName: Full=Probable protein arginine N-methyltransferase 3 gi|110741943|dbj|BAE98912.1| hypothetical protein [Arabidopsis thaliana] gi|332641657|gb|AEE75178.1| protein arginine N-methyltransferase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/480 (55%), Positives = 336/480 (70%), Gaps = 54/480 (11%)
Query: 21 EEEEEEEETEQDWGDWSEDDGGLESG--------------FLCLFCDAGYSSCDTLFEHC 66
E+EEE E DWGDW DD G+E G FLCLFCD+ + SCD LFEHC
Sbjct: 15 EDEEENYSDEGDWGDWKADDNGIEGGEEEEEDDGDDSESDFLCLFCDSHFVSCDLLFEHC 74
Query: 67 RLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYN 126
RLSH FDFH V+ EL+LDFY SFKLINYIRSQVAEN C+ + EA +
Sbjct: 75 RLSHGFDFHGVRKELKLDFYSSFKLINYIRSQVAENMCFSWKI-------------EADD 121
Query: 127 LKETKLRWDKEKYLKPFMQDDKLLYSFGEDEVDEED--NDAELMRDVMNFENISVDDGSS 184
K+ K WD+EKYLKPF Q+D LLYSF +DE DEE + E+M ++ ++S+D +
Sbjct: 122 YKDVKFPWDEEKYLKPFWQEDSLLYSFADDEEDEEVTFDREEVMEELQKLGDLSIDVEAL 181
Query: 185 KDKSATNN--CTADEIGKVAAVSTLNGHPNMENSSEKMIVNGFDSREHIGAFDSKLEDKD 242
+ S +N+ C + V ++S NG ++S++ +IVNG +D +
Sbjct: 182 GESSMSNSDKCNINGSKDVTSLSNCNGLK--QSSADDLIVNG--------------KDAE 225
Query: 243 SRVSLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVM 302
+V +L ++I+KVNE+YFGSYSSFGIHREM+SDKVRT++YR A+L+NP+L+ G+VVM
Sbjct: 226 PKVCDGRLVNRNIRKVNENYFGSYSSFGIHREMLSDKVRTEAYRDALLKNPTLLNGSVVM 285
Query: 303 DIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362
D+GCGTGILSLFAA+AGASRV+AVEASEKMA VAT+IAKDN + D + G +
Sbjct: 286 DVGCGTGILSLFAAKAGASRVVAVEASEKMAKVATKIAKDNKVFNDNEHN-------GVL 338
Query: 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422
EV MVEEL +S+QIQPHSVDVLVSEWMGYCLLYESMLSSVL+ARD+WLKPGGAILPDT
Sbjct: 339 EVAHSMVEELDKSIQIQPHSVDVLVSEWMGYCLLYESMLSSVLYARDRWLKPGGAILPDT 398
Query: 423 ATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQV 482
ATMFVAGFG+G TSLPFWE+VYGF MS +G+E+ D +PIVDV+ + DLVT +LQ
Sbjct: 399 ATMFVAGFGKGATSLPFWEDVYGFDMSSIGKEIHDDTTRLPIVDVIAERDLVTQPTLLQT 458
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357456355|ref|XP_003598458.1| Protein arginine methyltransferase [Medicago truncatula] gi|355487506|gb|AES68709.1| Protein arginine methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/493 (54%), Positives = 331/493 (67%), Gaps = 54/493 (10%)
Query: 32 DWGDWSEDDGGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKL 91
+W DW E+DG +S F+CLFCD+ +SSC +LF+HC H FDFH V+ L LDFY SFKL
Sbjct: 34 NWDDWEENDGDSDSEFICLFCDSNFSSCTSLFQHCASVHHFDFHVVRDSLNLDFYASFKL 93
Query: 92 INYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKLLY 151
INYIRS+VAE+RCW CGL CQS DLQNHLH+ + K WD +KYLKPFMQDD LLY
Sbjct: 94 INYIRSKVAESRCWSCGLACQSKHDLQNHLHDVTDFNGIKPLWDDDKYLKPFMQDDSLLY 153
Query: 152 SFGEDEVDEEDNDAELMRDVMNFENISVDDGSSKD-KSATNNCTADEIGKVAA---VSTL 207
+FGE E E++ + + D++ KD K A D + K+ V
Sbjct: 154 NFGEFEEGEDEETSTMDEDLV------------KDLKDAIYGDNQDAVKKLVVNDDVYVS 201
Query: 208 NGHPNMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSYS 267
+ H ++ +SS+K +VNG DSR + + D E+ + A I+KVNESYFGSYS
Sbjct: 202 DDHSSLPSSSDKELVNGKDSRGSVSSIDKNPEEGSLISNPQNHIATHIRKVNESYFGSYS 261
Query: 268 SFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVE 327
SFGIHREM+SDK R D+Y QAIL+NPSL+ GAVVMD+GCGTGILSLF+AQAGASRVIAVE
Sbjct: 262 SFGIHREMLSDKARMDAYGQAILKNPSLLNGAVVMDVGCGTGILSLFSAQAGASRVIAVE 321
Query: 328 ASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV 387
AS KMAAVA+Q+AK+N ++ ++ N N G +EVV GMVEE+ + +++QPHSVDVL+
Sbjct: 322 ASAKMAAVASQVAKNNGLLLNKSETRVNGNQKGVVEVVHGMVEEIDKIVELQPHSVDVLL 381
Query: 388 SEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM---------------------- 425
SEWMGYCLLYESML SVL+ARD++LKPGGAILPDTAT+
Sbjct: 382 SEWMGYCLLYESMLGSVLYARDRYLKPGGAILPDTATIPMAAAGPVVAERFAVVAVAATI 441
Query: 426 ----------------FVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVD 469
FVAGFG+GGTSLPFWENV F MSC+G E+V DAA PIVDV+D
Sbjct: 442 VAKIADGADAMLFLLQFVAGFGKGGTSLPFWENVCDFDMSCIGEELVIDAARYPIVDVID 501
Query: 470 DHDLVTDSVVLQV 482
DLVT S +LQ
Sbjct: 502 HQDLVTSSTILQT 514
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | ||||||
| TAIR|locus:2082244 | 601 | PRMT3 "protein arginine methyl | 0.494 | 0.409 | 0.639 | 1.5e-81 | |
| UNIPROTKB|A6QL80 | 527 | PRMT3 "PRMT3 protein" [Bos tau | 0.138 | 0.130 | 0.594 | 1.4e-48 | |
| UNIPROTKB|F1NYG2 | 513 | PRMT3 "Uncharacterized protein | 0.138 | 0.134 | 0.623 | 6.6e-48 | |
| UNIPROTKB|O60678 | 531 | PRMT3 "Protein arginine N-meth | 0.138 | 0.129 | 0.594 | 1.1e-47 | |
| UNIPROTKB|E2RFY5 | 541 | PRMT3 "Uncharacterized protein | 0.138 | 0.127 | 0.608 | 3.7e-46 | |
| ZFIN|ZDB-GENE-041105-1 | 512 | prmt3 "protein arginine methyl | 0.171 | 0.166 | 0.511 | 4.1e-45 | |
| FB|FBgn0037834 | 376 | Art1 "Arginine methyltransfera | 0.364 | 0.481 | 0.445 | 4.1e-43 | |
| UNIPROTKB|F1P8W2 | 454 | PRMT3 "Uncharacterized protein | 0.138 | 0.151 | 0.608 | 1.6e-41 | |
| UNIPROTKB|H0YDE4 | 238 | PRMT1 "Protein arginine N-meth | 0.193 | 0.403 | 0.464 | 1.9e-40 | |
| ASPGD|ASPL0000034802 | 542 | rmtB [Emericella nidulans (tax | 0.225 | 0.206 | 0.408 | 2.8e-40 |
| TAIR|locus:2082244 PRMT3 "protein arginine methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 163/255 (63%), Positives = 202/255 (79%)
Query: 212 NMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLL--KLSAKDIKKVNESYFGSYSSF 269
N+ S + ++ + + A D + KD+ + +L ++I+KVNE+YFGSYSSF
Sbjct: 193 NINGSKDVTSLSNCNGLKQSSADDLIVNGKDAEPKVCDGRLVNRNIRKVNENYFGSYSSF 252
Query: 270 GIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEAS 329
GIHREM+SDKVRT++YR A+L+NP+L+ G+VVMD+GCGTGILSLFAA+AGASRV+AVEAS
Sbjct: 253 GIHREMLSDKVRTEAYRDALLKNPTLLNGSVVMDVGCGTGILSLFAAKAGASRVVAVEAS 312
Query: 330 EKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE 389
EKMA VAT+IAKDN + D N +N G +EV MVEEL +S+QIQPHSVDVLVSE
Sbjct: 313 EKMAKVATKIAKDNKVFND------NEHN-GVLEVAHSMVEELDKSIQIQPHSVDVLVSE 365
Query: 390 WMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMS 449
WMGYCLLYESMLSSVL+ARD+WLKPGGAILPDTATMFVAGFG+G TSLPFWE+VYGF MS
Sbjct: 366 WMGYCLLYESMLSSVLYARDRWLKPGGAILPDTATMFVAGFGKGATSLPFWEDVYGFDMS 425
Query: 450 CVGREVVQDAAGIPI 464
+G+E+ D +PI
Sbjct: 426 SIGKEIHDDTTRLPI 440
|
|
| UNIPROTKB|A6QL80 PRMT3 "PRMT3 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 1.4e-48, Sum P(4) = 1.4e-48
Identities = 41/69 (59%), Positives = 54/69 (78%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ D+VRT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA
Sbjct: 216 YFSSYGHYGIHEEMLKDRVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 275
Query: 322 RVIAVEASE 330
+V+ V+ SE
Sbjct: 276 KVLGVDQSE 284
|
|
| UNIPROTKB|F1NYG2 PRMT3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 6.6e-48, Sum P(4) = 6.6e-48
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ DKVRT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA
Sbjct: 202 YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 261
Query: 322 RVIAVEASE 330
+VI V+ SE
Sbjct: 262 KVIGVDQSE 270
|
|
| UNIPROTKB|O60678 PRMT3 "Protein arginine N-methyltransferase 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 41/69 (59%), Positives = 54/69 (78%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ DK+RT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA
Sbjct: 220 YFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 279
Query: 322 RVIAVEASE 330
+V+ V+ SE
Sbjct: 280 KVLGVDQSE 288
|
|
| UNIPROTKB|E2RFY5 PRMT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 3.7e-46, Sum P(4) = 3.7e-46
Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ DKVRT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA
Sbjct: 230 YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 289
Query: 322 RVIAVEASE 330
+V+ V+ SE
Sbjct: 290 KVLGVDQSE 298
|
|
| ZFIN|ZDB-GENE-041105-1 prmt3 "protein arginine methyltransferase 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 4.1e-45, Sum P(4) = 4.1e-45
Identities = 44/86 (51%), Positives = 61/86 (70%)
Query: 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA 318
+E+YF SY + IH EM+ DKVRT+SYR + N + K VV+D+GCGTGILS+FAA+A
Sbjct: 198 DEAYFSSYGHYSIHEEMLKDKVRTESYRDFMYRNMDVFKDKVVLDVGCGTGILSMFAAKA 257
Query: 319 GASRVIAVEASEKMAAVATQIAKDND 344
GA +V+AV+ SE + A I + N+
Sbjct: 258 GAKKVVAVDQSE-IIYQAMDIVRSNN 282
|
|
| FB|FBgn0037834 Art1 "Arginine methyltransferase 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 89/200 (44%), Positives = 128/200 (64%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY+ FGIH EM+ D+VRT +YR A+ N L +G V+D+GCGTGILS+FAA+AGA+
Sbjct: 56 YFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGCGTGILSMFAAKAGAA 115
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
+VIAV+ S + A Q+ DN N+ + + VV+G +EE+ I+
Sbjct: 116 QVIAVDCSN-IIEFARQVVIDN-----------NLQDV--ITVVKGKIEEIELPNGIE-- 159
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF-GRG--GTSLP 438
VD+++SEWMGYCL YESML +VL+ARD+WLK G + PD T+++ R +
Sbjct: 160 GVDIIISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDRGTLYITAIEDRQYKDEKIN 219
Query: 439 FWENVYGFTMSCVGREVVQD 458
+W++VYGF MSC+ + V +
Sbjct: 220 WWDDVYGFDMSCIRKVAVTE 239
|
|
| UNIPROTKB|F1P8W2 PRMT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 1.6e-41, Sum P(4) = 1.6e-41
Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ DKVRT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA
Sbjct: 143 YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 202
Query: 322 RVIAVEASE 330
+V+ V+ SE
Sbjct: 203 KVLGVDQSE 211
|
|
| UNIPROTKB|H0YDE4 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 46/99 (46%), Positives = 66/99 (66%)
Query: 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415
I A K++ V +++ E +++ VD+++SEWMGYCL YESML++VL+ARD+WL P
Sbjct: 139 IVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPD 198
Query: 416 GAILPDTATMFVAGF-GRG--GTSLPFWENVYGFTMSCV 451
G I PD AT++V R + +WENVYGF MSC+
Sbjct: 199 GLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCI 237
|
|
| ASPGD|ASPL0000034802 rmtB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 2.8e-40, Sum P(4) = 2.8e-40
Identities = 47/115 (40%), Positives = 70/115 (60%)
Query: 233 AFDSKLEDKDSRVSLLKLSAKDIK--KVNESYFGSYSSFGIHREMISDKVRTDSYRQAIL 290
+ + +L +D ++ L K +V+ YF SY+ GIH M+ D +RTDSYR +
Sbjct: 175 SLEEQLTKEDEKLPLTPAGRTSTKAEEVDSDYFTSYAYNGIHESMLKDTIRTDSYRDFVY 234
Query: 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
EN + K VV+D+GCGTGILS+F A+AGA +VI+V+ S + A +I +N F
Sbjct: 235 ENKHIFKDKVVLDVGCGTGILSMFCAKAGARKVISVDNSNIIDR-AKEIVYENGF 288
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WVD6 | ANM3_ARATH | 2, ., 1, ., 1, ., - | 0.5583 | 0.8571 | 0.7088 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 497 | |||
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 6e-11 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-09 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 2e-08 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 3e-08 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-08 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 6e-08 | |
| pfam12756 | 100 | pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 cop | 2e-07 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 2e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-07 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 6e-07 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 2e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-06 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 3e-06 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 4e-06 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 9e-06 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 1e-05 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 2e-05 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 2e-05 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 3e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 4e-05 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 5e-05 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 6e-05 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 2e-04 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 3e-04 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 3e-04 | |
| PRK14896 | 258 | PRK14896, ksgA, 16S ribosomal RNA methyltransferas | 3e-04 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 3e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 5e-04 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 5e-04 | |
| COG0030 | 259 | COG0030, KsgA, Dimethyladenosine transferase (rRNA | 9e-04 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 9e-04 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 0.001 | |
| pfam08003 | 315 | pfam08003, Methyltransf_9, Protein of unknown func | 0.001 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 0.002 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltr | 0.003 | |
| smart00650 | 169 | smart00650, rADc, Ribosomal RNA adenine dimethylas | 0.003 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.004 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-11
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 25/124 (20%)
Query: 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355
GA V+DIGCGTG L++ A+ +RV V+ S +M +A + AK
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKL------------- 47
Query: 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415
++ VQG + + D + G +L ++ LKPG
Sbjct: 48 -ALGPRITFVQGDAPDALD----LLEGFDAVFI--GGGGGDLLELLDALA----SLLKPG 96
Query: 416 GAIL 419
G ++
Sbjct: 97 GRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360
V+D+GCGTG L+L A +RV V+ S +A + A A
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAA--------------AALLAD 47
Query: 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAI 418
+EV++G EEL S DV++S+ + L L + LKPGG +
Sbjct: 48 NVEVLKGDAEEL---PPEADESFDVIISDPPLHHLVEDLARFLEEAR----RLLKPGGVL 100
Query: 419 L 419
+
Sbjct: 101 V 101
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
++G V+D+G GTGIL++ AA GASRV+AV+ + +A A++
Sbjct: 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL 92
|
Length = 198 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 24/140 (17%)
Query: 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339
+R D R+ L G V+D+GCG GILS A+ GAS V ++ASEK VA
Sbjct: 43 LRLDYIREVARLRFDL-PGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLH 100
Query: 340 AKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYES 399
A +S NI+ Q VE+L DV+ + L +
Sbjct: 101 A---------LESGVNIDYR------QATVEDLAS----AGGQFDVVTCMEV---LEHVP 138
Query: 400 MLSSVLFARDQWLKPGGAIL 419
S L A + +KPGG +
Sbjct: 139 DPESFLRACAKLVKPGGILF 158
|
Length = 243 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-08
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 31/119 (26%)
Query: 303 DIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362
D+GCGTG+L+ A+ G +RV V+ S +M A+A +
Sbjct: 2 DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARK--------------------RAPR 41
Query: 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL--FARDQWLKPGGAIL 419
+ V G E+L S DV+VS + L + L AR LKPGG ++
Sbjct: 42 KFVVGDAEDLP----FPDESFDVVVSSLV---LHHLPDPERALREIAR--VLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 6e-08
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
L + G ++D GCG G LS+ A+ GA +V+A + S +M A + A +
Sbjct: 56 LPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPE 107
|
Length = 230 |
| >gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 49 CLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE-NRCWIC 107
CLFC+ + + EH SH F + L+NY+R ++ E N C C
Sbjct: 2 CLFCNHTSDTVEENLEHMFKSHGFFIPERE-----YLVDLEGLLNYLREKIHEGNECLYC 56
Query: 108 GLTCQSNQDLQNHL 121
G +S + L+ H+
Sbjct: 57 GKQFKSLEALRQHM 70
|
This family contains two copies of a C2H2-like zinc finger domain. Length = 100 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
+A+ + ++ G V+D+GCG+GIL++ AA+ GA +V+AV+ A + A++N
Sbjct: 111 EALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAAREN 161
|
Length = 250 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 297 KGAVVMDIGCGTGILSLFAAQ--AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEG 354
G V+D+GCGTG L+ A+ + V+ ++ SE+ A + AK +
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY--------- 53
Query: 355 NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVS 388
+E +QG +EEL +Q++ +S DV++S
Sbjct: 54 -----ENVEFIQGDIEEL-PQLQLEDNSFDVVIS 81
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 31/132 (23%)
Query: 248 LKLSAKDIKKVNESYFGSYS------SFGIHREMISDKVRTDSYRQAILENPSLMKGAVV 301
+ ++KV + Y SFG+HR +R+A++ + G V
Sbjct: 6 KDEKQEKVQKVFDKVAKKYDLMNDLMSFGLHR----------LWRRALISLLGIKPGDKV 55
Query: 302 MDIGCGTGILSL-FAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360
+D+ CGTG ++L A G V+ ++ SE M VA + K
Sbjct: 56 LDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV--------------Q 101
Query: 361 KMEVVQGMVEEL 372
+E V G E L
Sbjct: 102 NVEFVVGDAENL 113
|
Length = 238 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339
+R D R I +N + G V+D+GCG G+LS A+ GA+ V ++ASE+ VA
Sbjct: 28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEVAKLH 86
Query: 340 AKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYES 399
AK + + K+E VE+L E S DV+ + L +
Sbjct: 87 AK-----------KDPLL---KIEYRCTSVEDLAEK---GAKSFDVVTCMEV---LEHVP 126
Query: 400 MLSSVLFARDQWLKPGGAI 418
+ + A Q LKPGG +
Sbjct: 127 DPQAFIRACAQLLKPGGIL 145
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 25/133 (18%)
Query: 298 GAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356
G V+D G G+G L AA+AG +RV+ VE + A +A+ +
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVE----LDPEAAALAR---RRLALAGLAPRV 53
Query: 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLV-----SEWMGYCLLYESMLSSVLFARDQW 411
VV G EL +++ S D+++ G + L A +
Sbjct: 54 R------VVVGDAREL---LELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRL 104
Query: 412 LKPGG---AILPD 421
LKPGG I P
Sbjct: 105 LKPGGVLVVITPA 117
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
KG V+D+GCG+GIL++ AA+ GA +V+ V+ A + A++N
Sbjct: 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDP----QAVEAAREN 204
|
Length = 300 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 284 SYRQAILENPSLMKGAVVMDIGCGTGILSL-FAAQAGA-SRVIAVEASEKMAAVATQIAK 341
YR E ++ G V+D+GCG G + A + G RV+ ++ SE M A+A + A
Sbjct: 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA 65
Query: 342 DN 343
Sbjct: 66 GL 67
|
Length = 241 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 9e-06
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
G V+D+GCG+GIL++ A + GA +V+ V+ VA + AK+N
Sbjct: 160 PGETVLDVGCGSGILAIAALKLGAKKVVGVDIDP----VAVRAAKEN 202
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 256 KKVNESYF--------GSYSSFGIHREMISDKVRTDSYRQAILEN------PSLMKGAVV 301
K+ YF G + VR R A+ +KG V
Sbjct: 2 KEQVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREG--RAAMRRKLLDWLPKDPLKGKRV 59
Query: 302 MDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355
+D GCGTG+LS+ A+ GA V AV+ SE+M +A A+ D + E N
Sbjct: 60 LDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-AGNVEFEVN 111
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIA 340
L L G V+D+ G+G L++ AA AGA V AV+ S + A A
Sbjct: 28 ALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA 79
|
Length = 223 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMA 333
G + DIG GTG +++ A AG S RVIA+E E+
Sbjct: 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL 71
|
Length = 187 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 272 HREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEK 331
H +++ D R + AI E + D+G G+GILS+ AA A A RVIA+E K
Sbjct: 11 HLDLLRDVERLAVFTSAIAE----VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPK 65
Query: 332 MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM 391
A +A + N EVV G++ + DV++ E +
Sbjct: 66 RARLAEENLHVPGD-----------VN---WEVVV------GDARDYDFENADVVICEML 105
Query: 392 GYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423
L+ E + V+ A ++L+ I+P
Sbjct: 106 DTALIEEKQV-PVINAVLEFLRYDPTIIPQEV 136
|
Length = 252 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360
++D+GCGTG + A+AG S V V+ S++ +A + +D
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP--------------- 45
Query: 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL--FARDQWLKPGG 416
K+ V +L S D+++ + L L ++L AR L+PGG
Sbjct: 46 KVRFVVADARDLPFEEG----SFDLVICAGLSLDYLSPKQLRALLREAAR--LLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 18/90 (20%)
Query: 281 RTDSYR--QAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVAT 337
R D+ +A L L ++D+G G+G +++ A+ G + VIAV+ S A
Sbjct: 93 RPDTELLVEAALAL-LLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPD----AL 147
Query: 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367
+A++N +R N ++ VVQ
Sbjct: 148 ALAREN---AER-------NGLVRVLVVQS 167
|
Length = 280 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 22/92 (23%)
Query: 301 VMDIGCGTGILSLFAAQ-AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359
++D+G G G L L AQ ++++ VE E+ A +A + N+
Sbjct: 48 ILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQR----------------NVALN 91
Query: 360 G---KMEVVQGMVEELGESMQIQPHSVDVLVS 388
+++V++ ++E ++ + S D+++
Sbjct: 92 PLEERIQVIEADIKEFLKA--LVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD 348
I E+ + G V+D+GCG GILS A+ GA V ++ASE+ VA A ++
Sbjct: 40 IREHAGGLFGKRVLDVGCGGGILSESMARLGAD-VTGIDASEENIEVARLHALESGL--- 95
Query: 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDV 385
K++ Q EEL P DV
Sbjct: 96 ------------KIDYRQTTAEELAAE---HPGQFDV 117
|
Length = 233 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 287 QAILENPSLMKGAVVMDIGCGTGILSL-FAAQAGASRVIAVEASEKMAAVATQIAKDN 343
+ LE L + V+D+G G+G ++L A + + V AV+ S A+A +A+ N
Sbjct: 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP--EALA--VARRN 151
|
Length = 275 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAK 341
ILE L G ++DIGCG G L+++AA+ V+ V SE+ A A +
Sbjct: 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIA 116
|
Length = 283 |
| >gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
D I+E G V++IG G G L+ A+ A +V A+E ++A
Sbjct: 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA 73
Query: 343 ND 344
Sbjct: 74 AG 75
|
Length = 258 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 300 VVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDF 345
VV+D+G G SL+ A+ GA RVIA E + + K N+
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL 47
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356
KG V+++G G+GI+++ AA+ G +V+ V+ + A + AK N ++ N
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPY----AVECAKCN--------AKLNN 69
Query: 357 NNAGKMEVVQG 367
+EV++
Sbjct: 70 IRNNGVEVIRS 80
|
Length = 188 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 295 LMKGAVVMDIGCGTGILSLFAA-QAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE 353
L G V+ DIG GTG +++ AA RV A+E + + + + +
Sbjct: 17 LRPGDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGV-------- 68
Query: 354 GNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLK 413
NI +V+G E E + P +V ++G +L +L A ++ L+
Sbjct: 69 SNI------VIVEGDAPEAPEDLLPDPDAV------FVGGS---GGLLQEILEAVERRLR 113
Query: 414 PGGAILPDTAT 424
PGG I+ + T
Sbjct: 114 PGGRIVLNAIT 124
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
+ I+E ++ G V++IG G G L+ + A RV A+E ++A V +
Sbjct: 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP 74
Query: 343 ND 344
D
Sbjct: 75 YD 76
|
Length = 259 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 9e-04
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 52/165 (31%)
Query: 268 SFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS--RVIA 325
SFG+HR +R+ ++ + G V+D+ CGTG L++ A+A V+
Sbjct: 32 SFGLHR----------VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVG 81
Query: 326 VEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDV 385
++ SE M AV + +D +G +E VQG E L +S D
Sbjct: 82 LDFSEGMLAVGREKLRDL-------------GLSGNVEFVQGDAEAL----PFPDNSFD- 123
Query: 386 LVSEWMGYCL---------LYESMLSSVLFARDQWLKPGG--AIL 419
V+ + + L L E R LKPGG IL
Sbjct: 124 AVT--IAFGLRNVPDIDKALRE-------MYR--VLKPGGRLVIL 157
|
Length = 239 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
+K V+D+GCG+GILS+ A + GA++V+ ++ + +A + A+ N
Sbjct: 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGID----IDPLAVESARKN 201
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 264 GSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRV 323
G + G+H I + R+D +L + S +KG ++D+GCG G GA+ V
Sbjct: 85 GPFHLHGVH---IDTEWRSDWKWDRVLPHLSPLKGRTILDVGCGNGYHMWRMLGEGAALV 141
Query: 324 IAVEASE 330
+ ++ SE
Sbjct: 142 VGIDPSE 148
|
This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins. Length = 315 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 30/106 (28%)
Query: 292 NP----SLMKGAVVMDIGCGTGILSLFAAQA-GAS-RVIAVEASEKMAAVATQIAKDNDF 345
NP L G V+D+G G G AA+ G + +VI V+ + +M A A+ N
Sbjct: 68 NPTALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLA----KARAN-- 121
Query: 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQP---HSVDVLVS 388
+ N E G +E L P +SVDV++S
Sbjct: 122 -----ARKAGYTNV---EFRLGEIEAL-------PVADNSVDVIIS 152
|
Length = 272 |
| >gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
G V+++ TG S+ AA GAS V +V+ S++ A + A+ N
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGL 265
|
Length = 393 |
| >gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335
I+ +L G V++IG G G L+ + RV A+E ++A
Sbjct: 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAK-RVTAIEIDPRLAPR 50
|
Length = 169 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 34/134 (25%)
Query: 288 AILENPSLMKGAVVMDIGCGTGILS-LFAAQAGASRVIAVEASEKMAAVATQIAKDNDFW 346
A+L+ + A V+DIGCGTG L+ + + IA + S M A A +N +
Sbjct: 25 ALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSENVQF 84
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVS----EWMGYCLLYESMLS 402
+ G E+L ++ S D++VS +W LS
Sbjct: 85 ------------------ICGDAEKL----PLEDSSFDLIVSNLALQWCD-------DLS 115
Query: 403 SVLFARDQWLKPGG 416
L + LKPGG
Sbjct: 116 QALSELARVLKPGG 129
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG2482 | 423 | consensus Predicted C2H2-type Zn-finger protein [T | 99.97 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.95 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.81 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.78 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.76 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.73 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.71 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.67 | |
| KOG2785 | 390 | consensus C2H2-type Zn-finger protein [General fun | 99.66 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.64 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.63 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.62 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.61 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.6 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.6 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.59 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.58 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.58 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.58 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.57 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.55 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.54 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.54 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.52 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.51 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.51 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.51 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.51 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.51 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.5 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.49 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.49 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.48 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.48 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.47 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.47 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.47 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.47 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.46 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.45 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.45 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.44 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.44 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.44 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.42 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.42 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.41 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.41 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.4 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.4 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.4 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.4 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.4 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.4 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.4 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.39 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.39 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.39 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.38 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.38 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.38 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.37 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.36 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.36 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.34 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.34 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.34 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.33 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.33 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.33 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.33 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.33 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.32 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.32 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.32 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.32 | |
| PF12756 | 100 | zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: | 99.31 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.31 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.3 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.3 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.29 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.29 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.29 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.29 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.28 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.28 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.27 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.27 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.27 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.27 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.26 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.26 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.26 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.24 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.24 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.23 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.23 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.23 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.21 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.21 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.21 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.21 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.21 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.2 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.2 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.18 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.18 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.18 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.17 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.16 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.16 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.16 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.15 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.15 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.15 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.13 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.13 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.12 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.12 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.11 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.11 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.1 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.09 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.09 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.08 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.08 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.07 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.07 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.07 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.07 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.07 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.07 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.06 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.06 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.06 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.05 | |
| PLN02476 | 278 | O-methyltransferase | 99.04 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.03 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.02 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.01 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.01 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.0 | |
| PLN02366 | 308 | spermidine synthase | 99.0 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.98 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.98 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.97 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.97 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.96 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.95 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.95 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.94 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.93 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.88 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.84 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.83 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.82 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.79 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.77 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.76 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.74 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.74 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.73 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.72 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.71 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.7 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.69 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.68 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.68 | |
| PLN02823 | 336 | spermine synthase | 98.67 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.66 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.66 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.66 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.64 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.63 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.59 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.58 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.57 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.54 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.53 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.5 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.49 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.49 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.47 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.47 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.44 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.44 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.42 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.42 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.41 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.41 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.4 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.39 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.38 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.38 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.37 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.36 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.36 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.35 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.34 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.34 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.33 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 98.32 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.28 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.28 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.24 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.22 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.22 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.21 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.18 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.14 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.14 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.13 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.13 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.13 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.09 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.07 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.05 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.05 | |
| KOG2482 | 423 | consensus Predicted C2H2-type Zn-finger protein [T | 98.01 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.01 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.97 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.91 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.9 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.86 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.85 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.82 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.82 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 97.82 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.81 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.8 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.78 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.75 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.69 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.69 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.68 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.66 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.64 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.64 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.61 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.57 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.45 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.41 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.36 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.35 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.33 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.32 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.27 | |
| PHA01634 | 156 | hypothetical protein | 97.11 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.02 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.93 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.92 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.9 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.9 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.85 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.84 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.77 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.76 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.75 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.73 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.73 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.47 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.41 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.2 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.15 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.13 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.12 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.08 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 95.95 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.85 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.85 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.81 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.8 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.71 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.71 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.7 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.58 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.56 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.56 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.36 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.32 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.03 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.55 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.34 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 94.01 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.88 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.81 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.65 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.6 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.54 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.52 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.5 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.28 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.21 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 92.99 | |
| PF13912 | 27 | zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9 | 92.79 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.73 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.58 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 92.38 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 92.17 | |
| PF05605 | 54 | zf-Di19: Drought induced 19 protein (Di19), zinc-b | 92.14 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.07 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.79 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 91.68 | |
| PF13821 | 55 | DUF4187: Domain of unknown function (DUF4187) | 91.63 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 91.51 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 91.51 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 91.41 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.37 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 91.33 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 91.27 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.18 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.08 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 91.06 | |
| PF13894 | 24 | zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP | 90.96 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.92 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.9 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 90.81 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 90.37 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 90.33 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 90.24 | |
| PHA00616 | 44 | hypothetical protein | 90.1 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 90.05 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.05 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 89.95 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 89.26 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 89.06 | |
| KOG4173 | 253 | consensus Alpha-SNAP protein [Intracellular traffi | 89.05 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.95 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 88.55 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 88.39 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 88.36 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 88.25 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 88.22 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 88.2 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 87.91 | |
| PLN02494 | 477 | adenosylhomocysteinase | 87.87 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 87.82 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 87.64 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 87.43 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 87.38 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 87.22 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 87.19 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.13 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 87.05 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 86.99 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 86.98 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 86.89 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 86.82 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 86.77 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 86.23 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.12 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 86.03 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 86.03 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 86.01 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 85.86 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 85.86 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 85.59 | |
| PF13894 | 24 | zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP | 85.14 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 85.12 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 85.08 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 84.99 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 84.89 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 84.8 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 84.73 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 84.61 | |
| PRK13699 | 227 | putative methylase; Provisional | 84.55 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 84.42 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 84.33 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 84.32 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 84.3 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 84.21 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 83.95 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 83.71 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 83.62 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 83.57 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 82.92 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 82.9 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 82.75 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 82.63 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 82.51 | |
| PF13909 | 24 | zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W | 82.23 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 82.2 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 82.13 | |
| PHA00732 | 79 | hypothetical protein | 81.89 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 81.82 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 81.76 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 81.58 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 81.35 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.03 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 80.82 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 80.79 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 80.71 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 80.7 | |
| KOG2462 | 279 | consensus C2H2-type Zn-finger protein [Transcripti | 80.63 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.59 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 80.2 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 80.11 | |
| PF12756 | 100 | zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: | 80.07 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 80.04 |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=332.46 Aligned_cols=206 Identities=50% Similarity=0.905 Sum_probs=192.4
Q ss_pred hccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 010913 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 258 ~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~ 337 (497)
.++.||++|++++||++|++|.+|+.+|+.+|+++..++++++|||||||||++|+++|++|+.+|+|||.|.. ++.|+
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i-a~~a~ 99 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI-ADFAR 99 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH-HHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999985 58999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 338 ~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+.+..|++. +.|++++|.++++. +|.+++|+|+|+||||+|++++|++++|.++.++|+|||.
T Consensus 100 ~iv~~N~~~-------------~ii~vi~gkvEdi~----LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~ 162 (346)
T KOG1499|consen 100 KIVKDNGLE-------------DVITVIKGKVEDIE----LPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGL 162 (346)
T ss_pred HHHHhcCcc-------------ceEEEeecceEEEe----cCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCce
Confidence 999999983 58999999999984 5689999999999999999999999999999999999999
Q ss_pred EeccCceeEEeeecCCC---CCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHhhh
Q 010913 418 ILPDTATMFVAGFGRGG---TSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSVR 485 (497)
Q Consensus 418 li~~~~~~~~~~~~~~~---~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~~ 485 (497)
++|+.++++++++.+.. ..+.||.++|||+|+++++....+ |.+++++++.++++|+.++.+..
T Consensus 163 i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e----~lv~vv~~~~l~t~~~~i~~~Dl 229 (346)
T KOG1499|consen 163 IYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKKIAIKE----PLVDVVDPEQLLTEPCLIKEFDL 229 (346)
T ss_pred EccccceEEEEeccCchhhhhhcCccccccccchhhhhhhhhcc----cceeccChhHhcccceeeEEeee
Confidence 99999999999999874 456699999999999999887554 69999999999999999987653
|
|
| >KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-33 Score=267.29 Aligned_cols=151 Identities=30% Similarity=0.638 Sum_probs=134.6
Q ss_pred CCCCCccchhhhccccCC--cccccccccCCcCCCCCCCCCCCCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhh
Q 010913 4 NNKPETEETRKRIEENHE--EEEEEEETEQDWGDWSEDDGGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTEL 81 (497)
Q Consensus 4 ~n~~~~~~~~~~~~~~~~--~~~~~~~~~~~w~dw~~~~~~~~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~ 81 (497)
|||++.||+|...-...+ --++..++|++|+||.+++. +...++||||+....++..+++||+..|.|||.+++..+
T Consensus 236 INY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a-~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~ 314 (423)
T KOG2482|consen 236 INYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDA-EALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDY 314 (423)
T ss_pred EeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCC-CccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhcccc
Confidence 899999999998887763 23344556678999999864 344589999999999999999999999999999999999
Q ss_pred cCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh---ccCcccCCCCCCCCcccccccCccccccccCC
Q 010913 82 RLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA---YNLKETKLRWDKEKYLKPFMQDDKLLYSFGED 156 (497)
Q Consensus 82 ~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~---~~~~~~~~~w~~d~yl~Pv~e~D~lL~~~d~~ 156 (497)
+|+|||+||+|||||+++...+|+.|...|....+++.||.+. +++++ ...||..+|++|++|||.|||.+||.
T Consensus 315 ~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k~l~i~pd-~~iwD~~e~~fP~~eND~lLC~ldD~ 391 (423)
T KOG2482|consen 315 SLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDKHLSILPD-EVIWDPREFFFPYIENDGLLCVLDDS 391 (423)
T ss_pred ccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccccccccccCc-ccccCchhhccceecCCceEEEeccc
Confidence 9999999999999999999999999999999999999999976 45554 67899999999999999999999885
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-28 Score=233.02 Aligned_cols=199 Identities=41% Similarity=0.685 Sum_probs=183.0
Q ss_pred ccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 010913 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 259 ~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~ 338 (497)
...||.-|+.....+.|+.|.+||..|.++|+.|..-+++++|||||||+|++++++|++|+++|+||+.|+ |.+.|++
T Consensus 139 A~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~ 217 (517)
T KOG1500|consen 139 ASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARK 217 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHH
Confidence 457999999888899999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 339 ~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
.+..|.+ .++|.+|.|.++++. -++++|+|||++||+.|..+.|+.+.+.+. ++|||.|.+
T Consensus 218 Lv~~N~~-------------~~rItVI~GKiEdie-----LPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkM 278 (517)
T KOG1500|consen 218 LVASNNL-------------ADRITVIPGKIEDIE-----LPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKM 278 (517)
T ss_pred HHhcCCc-------------cceEEEccCcccccc-----CchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcc
Confidence 9999987 479999999999984 368899999999999999999999999887 999999999
Q ss_pred eccCceeEEeeecCCC------CCCCccc--cccCccccccchHHHhhhcCCCeEeeeCCCcccccc
Q 010913 419 LPDTATMFVAGFGRGG------TSLPFWE--NVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDS 477 (497)
Q Consensus 419 i~~~~~~~~~~~~~~~------~~~~fw~--~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~ 477 (497)
+|....+++++|.+.. ..-.||- +.||.++..+.....++.|++|+|+.+++.-++..+
T Consensus 279 fPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~s 345 (517)
T KOG1500|consen 279 FPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKS 345 (517)
T ss_pred cCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccc
Confidence 9999999999998752 4445884 789999999999999999999999999999888654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=172.01 Aligned_cols=126 Identities=31% Similarity=0.531 Sum_probs=112.6
Q ss_pred ccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHH
Q 010913 263 FGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 263 f~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
+++..+++.|. .|++.+.......+|.+|||||||||.+++.+++. |..+|+|+|+|+.|++.|++++.
T Consensus 27 ~n~~~S~g~~~----------~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~ 96 (238)
T COG2226 27 MNDLMSFGLHR----------LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK 96 (238)
T ss_pred hcccccCcchH----------HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh
Confidence 45566788887 67777877777779999999999999999999998 76799999999999999999998
Q ss_pred hCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 342 DNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 342 ~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+. .++.++++|++++ |+++++||+|. +++.|.+..+.+.+|+++.|+|||||+++
T Consensus 97 ~~~~--------------~~i~fv~~dAe~L----Pf~D~sFD~vt---~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 97 KKGV--------------QNVEFVVGDAENL----PFPDNSFDAVT---ISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred ccCc--------------cceEEEEechhhC----CCCCCccCEEE---eeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 8776 3499999999998 69999999999 67789999999999999999999999876
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.4e-19 Score=166.45 Aligned_cols=143 Identities=29% Similarity=0.369 Sum_probs=120.4
Q ss_pred hhccccccccccch-hHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 257 KVNESYFGSYSSFG-IHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 257 ~~~~~Yf~~y~~~~-ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
.....||+.++.|. .|. -+..|...++..+..+.. .+|.+|||||||-|+++..+|+.|+ .|+|+|+++.+++.
T Consensus 22 ~la~~wwd~~g~f~~LH~---~N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~ 96 (243)
T COG2227 22 ALASRWWDPEGEFKPLHK---INPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEV 96 (243)
T ss_pred HHHhhhcCCCCceeeeee---eccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHH
Confidence 44578998888876 344 346666666666654444 6899999999999999999999997 99999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 336 ATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 336 A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
|+..+..+|+ .+.+.+..++++. ...++||+|+|.- ++.|.+++..+++++.+++|||
T Consensus 97 Ak~ha~e~gv---------------~i~y~~~~~edl~----~~~~~FDvV~cmE---VlEHv~dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 97 AKLHALESGV---------------NIDYRQATVEDLA----SAGGQFDVVTCME---VLEHVPDPESFLRACAKLVKPG 154 (243)
T ss_pred HHHhhhhccc---------------cccchhhhHHHHH----hcCCCccEEEEhh---HHHccCCHHHHHHHHHHHcCCC
Confidence 9999999987 5889999999985 3458999999865 6788899999999999999999
Q ss_pred cEEeccCceeE
Q 010913 416 GAILPDTATMF 426 (497)
Q Consensus 416 G~li~~~~~~~ 426 (497)
|.+++++.+..
T Consensus 155 G~lf~STinrt 165 (243)
T COG2227 155 GILFLSTINRT 165 (243)
T ss_pred cEEEEeccccC
Confidence 99998887653
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-19 Score=184.61 Aligned_cols=176 Identities=31% Similarity=0.461 Sum_probs=130.2
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCC----C----CCCCEEEEEcCCCCHhHHHHHHcC-----CCEEEEEeCCHHHHHHHH
Q 010913 271 IHREMISDKVRTDSYRQAILENPS----L----MKGAVVMDIGCGTGILSLFAAQAG-----ASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~----~----~~~~~VLDvGCGtG~ls~~la~~G-----~~~V~gvD~S~~~i~~A~ 337 (497)
.++.+-+|.+++..|.++|...+. . .++++|||||||+|.++++++++| +.+|+|||.|+.++..++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 566677999999999999865421 1 136899999999999999998886 579999999998887777
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 338 ~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+++..+++ .++|+++++|++++. .+.++|+|||++||.++.++ ..+.+|.++.|+|||||+
T Consensus 232 ~~v~~n~w-------------~~~V~vi~~d~r~v~-----lpekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 232 KRVNANGW-------------GDKVTVIHGDMREVE-----LPEKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGI 292 (448)
T ss_dssp HHHHHTTT-------------TTTEEEEES-TTTSC-----HSS-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEE
T ss_pred HHHHhcCC-------------CCeEEEEeCcccCCC-----CCCceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCE
Confidence 77788887 468999999999985 35599999999999888777 556689999999999999
Q ss_pred EeccCceeEEeeecCCCCCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccc
Q 010913 418 ILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDS 477 (497)
Q Consensus 418 li~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~ 477 (497)
++|+.++.+++++..+. .|..+..+ -....+..|.+..+.+...++++
T Consensus 293 ~IP~~~t~ylaPiss~~----l~~~~~~~--------~~~~~~e~pyvv~~~~~~~Ls~~ 340 (448)
T PF05185_consen 293 MIPSSYTSYLAPISSPK----LYQEVRNW--------WNPSSFETPYVVHLSPFELLSDP 340 (448)
T ss_dssp EESSEEEEEEEEEE-HH----HHHHHHHH--------HGHHHHTSSEEE--GGGGBCSCC
T ss_pred EeCcchhhEEEEeeCHH----HHHHHHhh--------cchhhcCCcEEEEccchhhhcCC
Confidence 99999999999987542 23332111 01455677777777777777766
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-18 Score=164.11 Aligned_cols=125 Identities=30% Similarity=0.442 Sum_probs=84.7
Q ss_pred cccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHH
Q 010913 264 GSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 264 ~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
+...++++|. .|++.+.......+|.+|||+|||||.++..+++. | ..+|+|+|+|+.|++.|++++.
T Consensus 24 n~~ls~g~~~----------~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~ 93 (233)
T PF01209_consen 24 NDLLSFGQDR----------RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK 93 (233)
T ss_dssp -----------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH
T ss_pred ccccCCcHHH----------HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH
Confidence 3344566665 34444444445678899999999999999999886 4 3599999999999999999998
Q ss_pred hCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 342 DNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 342 ~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+. .+|+++++|++++ |+++++||+|+ +++.+.+.+++..+|.++.|+|||||.++
T Consensus 94 ~~~~--------------~~i~~v~~da~~l----p~~d~sfD~v~---~~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 94 REGL--------------QNIEFVQGDAEDL----PFPDNSFDAVT---CSFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp HTT----------------SEEEEE-BTTB------S-TT-EEEEE---EES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred hhCC--------------CCeeEEEcCHHHh----cCCCCceeEEE---HHhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 8876 5899999999998 58999999999 55577777889999999999999999987
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=164.51 Aligned_cols=154 Identities=22% Similarity=0.282 Sum_probs=119.5
Q ss_pred hhhhHHHhhh---ccccccccccchhHHhhhcchhhhHHHHHHHHhCC-------CCCCCCEEEEEcCCCCHhHHHHHHc
Q 010913 249 KLSAKDIKKV---NESYFGSYSSFGIHREMISDKVRTDSYRQAILENP-------SLMKGAVVMDIGCGTGILSLFAAQA 318 (497)
Q Consensus 249 ~~~~~~~~~~---~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~-------~~~~~~~VLDvGCGtG~ls~~la~~ 318 (497)
++...++.++ .+.||+..++|..+..| +..|...+++.+.... ...++.+|||||||+|.++..+++.
T Consensus 75 s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~ 152 (322)
T PLN02396 75 SLNEDELAKFSAIADTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARM 152 (322)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHc
Confidence 3444555444 35899999998765544 4566666665554322 2346789999999999999999988
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccCh
Q 010913 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE 398 (497)
Q Consensus 319 G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~ 398 (497)
|+ +|+|||+|+.+++.|++++...++ ..++.+++++++++. ++.++||+|++.. ++.|.
T Consensus 153 g~-~V~GID~s~~~i~~Ar~~~~~~~~-------------~~~i~~~~~dae~l~----~~~~~FD~Vi~~~---vLeHv 211 (322)
T PLN02396 153 GA-TVTGVDAVDKNVKIARLHADMDPV-------------TSTIEYLCTTAEKLA----DEGRKFDAVLSLE---VIEHV 211 (322)
T ss_pred CC-EEEEEeCCHHHHHHHHHHHHhcCc-------------ccceeEEecCHHHhh----hccCCCCEEEEhh---HHHhc
Confidence 87 899999999999999988765543 247999999998873 5678999999644 77778
Q ss_pred hhHHHHHHHHhccccCCcEEeccCcee
Q 010913 399 SMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 399 ~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.++..++.++.++|||||.+++.+.+.
T Consensus 212 ~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 212 ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 889999999999999999999776543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-17 Score=137.36 Aligned_cols=109 Identities=30% Similarity=0.429 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
|+.+|||||||+|.+++.+++. +..+|+|||+|+.+++.|++++...+. .++|+++++|+ ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~i~~~~~d~-~~~-- 64 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-------------SDRITFVQGDA-EFD-- 64 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-------------TTTEEEEESCC-HGG--
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CCCeEEEECcc-ccC--
Confidence 6789999999999999999993 344899999999999999999966665 37999999999 322
Q ss_pred cCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.-...+||+|++.+ ....+........++..+.+.|+|||++++.+
T Consensus 65 -~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 65 -PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 12356799999876 23334444678899999999999999999654
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-16 Score=150.39 Aligned_cols=146 Identities=24% Similarity=0.256 Sum_probs=113.2
Q ss_pred ccccccccccchhHHhhhcchhhhHHHHHHHHhCCCC-CC------CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHH
Q 010913 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSL-MK------GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEK 331 (497)
Q Consensus 259 ~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~-~~------~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~ 331 (497)
...||+..+.+..-..| +..|....++-++.+... .| |++|||+|||+|.+|..||+.|+ .|+|||+++.
T Consensus 46 a~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~ 122 (282)
T KOG1270|consen 46 AFTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDD 122 (282)
T ss_pred cccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHH
Confidence 46788888877644434 566777777887776532 33 47899999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhcc
Q 010913 332 MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQW 411 (497)
Q Consensus 332 ~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~ 411 (497)
|++.|++........+ ....-++.+...+++.+. ++||+|+|.. ++.|..++..++..+.+.
T Consensus 123 ~V~vA~~h~~~dP~~~--------~~~~y~l~~~~~~~E~~~-------~~fDaVvcse---vleHV~dp~~~l~~l~~~ 184 (282)
T KOG1270|consen 123 MVEVANEHKKMDPVLE--------GAIAYRLEYEDTDVEGLT-------GKFDAVVCSE---VLEHVKDPQEFLNCLSAL 184 (282)
T ss_pred HHHHHHHhhhcCchhc--------cccceeeehhhcchhhcc-------cccceeeeHH---HHHHHhCHHHHHHHHHHH
Confidence 9999999955443321 000114778888888763 3499999765 788999999999999999
Q ss_pred ccCCcEEeccCcee
Q 010913 412 LKPGGAILPDTATM 425 (497)
Q Consensus 412 LkpgG~li~~~~~~ 425 (497)
|||||.+++.+-+-
T Consensus 185 lkP~G~lfittinr 198 (282)
T KOG1270|consen 185 LKPNGRLFITTINR 198 (282)
T ss_pred hCCCCceEeeehhh
Confidence 99999999776543
|
|
| >KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-16 Score=158.20 Aligned_cols=112 Identities=23% Similarity=0.358 Sum_probs=85.0
Q ss_pred ccchhhhccccCCcccccccccCCcCCCCCCC--CCCCCCcceecCCCCCCCHHHHHHHhhhhcCcchhh---hhhhhcC
Q 010913 9 TEETRKRIEENHEEEEEEEETEQDWGDWSEDD--GGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHS---VKTELRL 83 (497)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~w~dw~~~~--~~~~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~---~~~~~~l 83 (497)
++-.|.|.....++. .+...+++|+|.+++. +.+..|+.||||++.+++++.++.||...|||-|++ +++..|
T Consensus 128 ~e~~~~E~~~~~d~~-~e~~~dd~~Edi~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~G- 205 (390)
T KOG2785|consen 128 SELKWYEVDSDEDSS-EEEEEDDEEEDIEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKG- 205 (390)
T ss_pred cccchhhcccccccc-hhhccCcchhhhhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhH-
Confidence 344566655553222 2222334555544443 234567999999999999999999999999995554 666666
Q ss_pred CccCceehhhhhHhhccccc-ccccC---CccCCHHHHHHHHHHhccCcc
Q 010913 84 DFYGSFKLINYIRSQVAENR-CWICG---LTCQSNQDLQNHLHEAYNLKE 129 (497)
Q Consensus 84 d~Y~~iKliNyiR~~~~~~~-c~~C~---~~~~~~~~~~~Hm~~~~~~~~ 129 (497)
|+-|++.+|..+. |++|+ ..|+|.+++++||.+|+||+.
T Consensus 206 -------Ll~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~HCkl 248 (390)
T KOG2785|consen 206 -------LLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKGHCKL 248 (390)
T ss_pred -------HHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhccCccc
Confidence 8889999998888 99998 689999999999999999996
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=142.68 Aligned_cols=118 Identities=24% Similarity=0.343 Sum_probs=103.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA------SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~------~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
.|.+.....+...++.+|||++||||-+++.+.++ +. ++|+.+|+|+.|++.++++..+.++..
T Consensus 87 lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--------- 157 (296)
T KOG1540|consen 87 LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA--------- 157 (296)
T ss_pred HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc---------
Confidence 45566667778888999999999999999999887 54 799999999999999999998877632
Q ss_pred CCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..++.++.+|++++ ||++.+||+.+ +++.+.+..+++.+|++++|+|||||++.
T Consensus 158 --~~~~~w~~~dAE~L----pFdd~s~D~yT---iafGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 158 --SSRVEWVEGDAEDL----PFDDDSFDAYT---IAFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred --CCceEEEeCCcccC----CCCCCcceeEE---EecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 24599999999998 69999999999 77788999999999999999999999986
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-15 Score=146.78 Aligned_cols=117 Identities=20% Similarity=0.297 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNA 359 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~ 359 (497)
.+++.+.....+.++.+|||+|||||.++..+++. |. .+|+|+|+|+.|++.|+++... .+. .
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~-------------~ 126 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC-------------Y 126 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc-------------C
Confidence 35555555556678899999999999999999876 43 5899999999999999877531 111 2
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++++++++++++ |+++++||+|++. +++++..++..++.++.|+|||||.+++
T Consensus 127 ~~i~~~~~d~~~l----p~~~~sfD~V~~~---~~l~~~~d~~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 127 KNIEWIEGDATDL----PFDDCYFDAITMG---YGLRNVVDRLKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred CCeEEEEcccccC----CCCCCCEeEEEEe---cccccCCCHHHHHHHHHHHcCcCcEEEE
Confidence 4799999999887 5888999999954 4666777899999999999999999874
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-15 Score=148.81 Aligned_cols=183 Identities=16% Similarity=0.095 Sum_probs=117.8
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+|.+-....++......+|++|||||||+|.++..++..|+..|+|||+|+.|+..++...+..+.
T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~------------- 169 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN------------- 169 (314)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------------
Confidence 4444444556666666788999999999999999999988888899999999998765443322111
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEee--ecCCCCC
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAG--FGRGGTS 436 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~--~~~~~~~ 436 (497)
..++.+..++++++. . ..+||+|+|.. ++.|..++..+|.+++++|||||.|++.+..+.... ...+...
T Consensus 170 ~~~v~~~~~~ie~lp----~-~~~FD~V~s~g---vL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r 241 (314)
T TIGR00452 170 DKRAILEPLGIEQLH----E-LYAFDTVFSMG---VLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR 241 (314)
T ss_pred CCCeEEEECCHHHCC----C-CCCcCEEEEcc---hhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH
Confidence 147888999998873 2 35899999865 556667888999999999999999996543221000 0000000
Q ss_pred CCcccccc-CccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHhh
Q 010913 437 LPFWENVY-GFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSV 484 (497)
Q Consensus 437 ~~fw~~v~-g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~ 484 (497)
..-..+++ ......+...+...+|. .+.+++.....++......++
T Consensus 242 y~k~~nv~flpS~~~L~~~L~~aGF~--~V~i~~~~~tt~~eqr~t~w~ 288 (314)
T TIGR00452 242 YAKMKNVYFIPSVSALKNWLEKVGFE--NFRILDVLKTTPEEQRKTDWI 288 (314)
T ss_pred HHhccccccCCCHHHHHHHHHHCCCe--EEEEEeccCCCHHHhhhhhhh
Confidence 00011222 23455667777666665 455555444433333333333
|
Known examples to date are restricted to the proteobacteria. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=122.98 Aligned_cols=95 Identities=32% Similarity=0.429 Sum_probs=78.6
Q ss_pred EEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCC
Q 010913 302 MDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381 (497)
Q Consensus 302 LDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~ 381 (497)
||+|||+|..+..+++.+..+|+|+|+|+.+++.++++.... ++.++.++++++ |++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----------------~~~~~~~d~~~l----~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----------------GVSFRQGDAEDL----PFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----------------TEEEEESBTTSS----SS-TT
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----------------CchheeehHHhC----ccccc
Confidence 899999999999999995559999999999999999986543 456999999987 58999
Q ss_pred ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 382 ~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+||+|++.. ++.+..++..++.++.|+|||||.+++
T Consensus 60 sfD~v~~~~---~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 60 SFDVVFSNS---VLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -EEEEEEES---HGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccc---ceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 999999765 444448899999999999999999873
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=148.30 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=96.3
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
..|.....+.+.......+|++|||||||+|.++..+++.|+..|+|+|+|+.++..++...+..+.
T Consensus 104 ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~------------- 170 (322)
T PRK15068 104 EWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN------------- 170 (322)
T ss_pred eehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-------------
Confidence 3444444455565666568899999999999999999999888899999999998765544332221
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
..++.++.++++++. + .++||+|+|.. ++.|..++..+|..+++.|+|||.+++++
T Consensus 171 ~~~i~~~~~d~e~lp----~-~~~FD~V~s~~---vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 171 DQRAHLLPLGIEQLP----A-LKAFDTVFSMG---VLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CCCeEEEeCCHHHCC----C-cCCcCEEEECC---hhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 247999999999873 5 78899999865 45566788899999999999999999753
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-15 Score=132.72 Aligned_cols=108 Identities=29% Similarity=0.459 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHH-c-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQ-A-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~-~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||+|||+|.++..+++ . +..+|+|||+|+.|++.|+++++.+++ ++++++++|+.++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~--------------~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL--------------DNIEFIQGDIEDLP 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS--------------TTEEEEESBTTCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc--------------cccceEEeehhccc
Confidence 4678999999999999999994 4 345999999999999999999999987 58999999999964
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.. ++ ++||+|++.. .+.+..++..++..+.++|+|||.+++...
T Consensus 68 ~~--~~-~~~D~I~~~~---~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 68 QE--LE-EKFDIIISNG---VLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp GC--SS-TTEEEEEEES---TGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--cC-CCeeEEEEcC---chhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 11 33 8999999765 445667888999999999999999984443
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=143.79 Aligned_cols=106 Identities=25% Similarity=0.309 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...|+ .++++++++++.++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-------------~~~v~~~~~d~~~l~-- 106 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-------------SDNMQFIHCAAQDIA-- 106 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-------------ccceEEEEcCHHHHh--
Confidence 4578999999999999999999986 999999999999999999988876 357999999998874
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.++||+|++.. ++.+..++..++..+.++|||||.+++.
T Consensus 107 -~~~~~~fD~V~~~~---vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 107 -QHLETPVDLILFHA---VLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred -hhcCCCCCEEEehh---HHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 34578999999654 5556677889999999999999999753
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=137.17 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=88.8
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.....++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++...++ .+++++.+|+.+
T Consensus 25 ~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~--------------~~v~~~~~d~~~ 89 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL--------------DNLHTAVVDLNN 89 (197)
T ss_pred hcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------CcceEEecChhh
Confidence 33455778999999999999999999987 999999999999999999888876 468889999877
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. + +++||+|++..+.++ .....+..++..+.++|||||.++
T Consensus 90 ~~----~-~~~fD~I~~~~~~~~-~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 90 LT----F-DGEYDFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred CC----c-CCCcCEEEEecchhh-CCHHHHHHHHHHHHHHcCCCcEEE
Confidence 63 3 467999998764332 344578899999999999999965
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=148.16 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=97.6
Q ss_pred HHHHHHhCCCC-----CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 285 YRQAILENPSL-----MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 285 y~~~i~~~~~~-----~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
+.+.++....+ .++.+|||||||+|.++..+++. |+ +|+|||+|+.+++.|+++++.+++
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~------------- 166 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGL------------- 166 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCC-------------
Confidence 33445555555 67899999999999999999987 55 999999999999999999888876
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++++++.+|+.++ +++.++||+|++.. .+.|..+...++.++.++|||||.+++..
T Consensus 167 ~~~v~~~~~D~~~~----~~~~~~FD~V~s~~---~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 167 SDKVSFQVADALNQ----PFEDGQFDLVWSME---SGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCceEEEEcCcccC----CCCCCCccEEEECC---chhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 35799999999886 47889999999754 45566778899999999999999998643
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=139.28 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.+++.++....+.++.+|||+|||+|.++..+++. | ..+|+|+|+|+.+++.|++++...++ ++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------~~ 97 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL--------------HN 97 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC--------------Cc
Confidence 55666777777788999999999999999999876 3 35999999999999999999877765 57
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.+|+.++ +++.++||+|++.. .+.+.+++..++.++.++|+|||.+++
T Consensus 98 v~~~~~d~~~~----~~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 98 VELVHGNAMEL----PFDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred eEEEEechhcC----CCCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 99999999876 36778999999643 556667788999999999999999974
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=134.44 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=88.0
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++......++.++||+|||.|+.+++||+.|. .|+|+|.|+..++.+++.+...++ .|+....|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l---------------~i~~~~~D 85 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL---------------DIRTRVAD 85 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT----------------TEEEEE-B
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc---------------eeEEEEec
Confidence 33334556788999999999999999999999 899999999999999999988887 59999999
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.+.. + ++.||+|+|..+..+ +.....+.++..+...++|||++++
T Consensus 86 l~~~~----~-~~~yD~I~st~v~~f-L~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 86 LNDFD----F-PEEYDFIVSTVVFMF-LQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GCCBS------TTTEEEEEEESSGGG-S-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred chhcc----c-cCCcCEEEEEEEecc-CCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 98874 4 478999998755544 4566788999999999999999874
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=137.19 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=85.4
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.....++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++..+++ ++.+..+++..
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~---------------~v~~~~~d~~~ 88 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL---------------PLRTDAYDINA 88 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC---------------CceeEeccchh
Confidence 33445678999999999999999999987 899999999999999998887776 36777777765
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. + +++||+|++..+.+. .+..+...++..+.++|||||.++
T Consensus 89 ~~----~-~~~fD~I~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 89 AA----L-NEDYDFIFSTVVFMF-LQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred cc----c-cCCCCEEEEeccccc-CCHHHHHHHHHHHHHHhCCCcEEE
Confidence 42 3 357999998764332 234577889999999999999865
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=140.45 Aligned_cols=120 Identities=28% Similarity=0.349 Sum_probs=92.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.+...+.+.+|.+|||||||.|.+++.+|+. |+ +|+||.+|+...+.|++.++..|+ .+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl-------------~~~v 114 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGL-------------EDRV 114 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS-------------SSTE
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCC-------------CCce
Confidence 45567788889999999999999999999999999 88 999999999999999999999998 3689
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
++..+|..++. .+||.|+|..|...+ .......++..+.++|||||.+++...+.
T Consensus 115 ~v~~~D~~~~~-------~~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 115 EVRLQDYRDLP-------GKFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp EEEES-GGG----------S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred EEEEeeccccC-------CCCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 99999988763 289999997754433 23678899999999999999998654443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-14 Score=131.37 Aligned_cols=101 Identities=31% Similarity=0.398 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.|++.|+++++.+++ ++++++++++.++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l--------------~~i~~~~~d~~~~~ 108 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL--------------KNVTVVHGRAEEFG 108 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC--------------CCEEEEeccHhhCC
Confidence 345899999999999999998875 456999999999999999999999887 45999999998864
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
. .++||+|++..+ ..+..++..+.++|||||.+++.
T Consensus 109 ----~-~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 109 ----Q-EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ----C-CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 3 678999997641 35678999999999999999843
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-14 Score=137.93 Aligned_cols=115 Identities=29% Similarity=0.349 Sum_probs=100.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.++..+.+.+|.+|||||||.|.+++.+|+. |+ +|+||++|+.+.+.++++++..|+ .++|
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl-------------~~~v 124 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGL-------------EDNV 124 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCC-------------Cccc
Confidence 45677888899999999999999999999999999 67 999999999999999999999998 3589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+++..|..++. ++||-|||..|...+.. ...+.++..+.++|+|||.++.
T Consensus 125 ~v~l~d~rd~~-------e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 125 EVRLQDYRDFE-------EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred EEEeccccccc-------cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEE
Confidence 99999988863 34999999876555433 4578899999999999999983
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=137.20 Aligned_cols=111 Identities=27% Similarity=0.350 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.++..+...++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++. ..+.+
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~-------------------~~~~~ 89 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD-------------------AADHY 89 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC-------------------CCCCE
Confidence 344455555445678999999999999999988876 9999999999999888763 13467
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+|++.+ +++.++||+|+|.. .+.+..++..+|.++.++|+|||.+++.+
T Consensus 90 ~~~d~~~~----~~~~~~fD~V~s~~---~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 90 LAGDIESL----PLATATFDLAWSNL---AVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred EEcCcccC----cCCCCcEEEEEECc---hhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 88999886 47788999999865 45556788999999999999999998553
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-14 Score=138.60 Aligned_cols=107 Identities=30% Similarity=0.453 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.++.+|||+|||+|..++.+++. |. .+|+|+|+|+.+++.|+++....++ .+++++.+++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--------------~~v~~~~~d~~~ 139 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--------------TNVEFRLGEIEA 139 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--------------CCEEEEEcchhh
Confidence 4578999999999999988877776 54 4899999999999999999888776 578999999988
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ +++.++||+|+++. ++.+..+...++.++.++|||||.+++.
T Consensus 140 l----~~~~~~fD~Vi~~~---v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 140 L----PVADNSVDVIISNC---VINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred C----CCCCCceeEEEEcC---cccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 6 46778999999875 3444567788999999999999999854
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=137.15 Aligned_cols=112 Identities=26% Similarity=0.360 Sum_probs=91.3
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.++....+.++.+|||||||+|..+..+++. |+ +|+|+|+|+.+++.|+++.... .++.+
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~----------------~~i~~ 103 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDK----------------NKIEF 103 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcC----------------CceEE
Confidence 344556677889999999999999999999876 55 9999999999999999875431 47999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.+. ++++++||+|++.. +++|. .++..++.++.++|||||.+++.
T Consensus 104 ~~~D~~~~----~~~~~~FD~V~s~~---~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 104 EANDILKK----DFPENTFDMIYSRD---AILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EECCcccC----CCCCCCeEEEEEhh---hHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99998865 47788999999754 33333 37889999999999999999854
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-14 Score=137.37 Aligned_cols=105 Identities=25% Similarity=0.348 Sum_probs=86.4
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.++......++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|++. ++.++.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------------------~~~~~~ 78 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------------------GVDART 78 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------------------CCcEEE
Confidence 4556666678899999999999999999987 234899999999999988652 467889
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+|++++ .+.++||+|+|.. ++++..++..++.++.++|||||.+++.
T Consensus 79 ~d~~~~-----~~~~~fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 79 GDVRDW-----KPKPDTDVVVSNA---ALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred cChhhC-----CCCCCceEEEEeh---hhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 999876 2457899999765 5556667889999999999999999864
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=128.62 Aligned_cols=98 Identities=28% Similarity=0.406 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||+|||+|.+++.++..+ ..+|+|+|.|+.|++.|+++++.+++ ++++++++++.++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~--------------~~i~~i~~d~~~~~-- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL--------------NNVEIVNGRAEDFQ-- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC--------------CCeEEEecchhhcc--
Confidence 48899999999999999988773 45899999999999999999988876 46999999998862
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++||+|+|.. + ..+..++..+.++|+|||.+++
T Consensus 106 ---~~~~fD~I~s~~----~---~~~~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 106 ---HEEQFDVITSRA----L---ASLNVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred ---ccCCccEEEehh----h---hCHHHHHHHHHHhcCCCCEEEE
Confidence 357899999764 2 2455678888999999999983
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=135.34 Aligned_cols=173 Identities=21% Similarity=0.154 Sum_probs=119.4
Q ss_pred hcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 010913 276 ISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355 (497)
Q Consensus 276 l~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~ 355 (497)
+..++|.+...+.+........|++|||||||.|..+..++++|++.|+|+|.+........-..+-.|.
T Consensus 94 IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~---------- 163 (315)
T PF08003_consen 94 IDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ---------- 163 (315)
T ss_pred ecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC----------
Confidence 3556666666677777776789999999999999999999999999999999999877664443333332
Q ss_pred CCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEe---eecC
Q 010913 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA---GFGR 432 (497)
Q Consensus 356 ~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~---~~~~ 432 (497)
...+.++...++++. . .++||+|+|.. +|.|..++-..|..++..|+|||.|++.+..+-.. .+ -
T Consensus 164 ---~~~~~~lplgvE~Lp----~-~~~FDtVF~MG---VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L-~ 231 (315)
T PF08003_consen 164 ---DPPVFELPLGVEDLP----N-LGAFDTVFSMG---VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVL-V 231 (315)
T ss_pred ---CccEEEcCcchhhcc----c-cCCcCEEEEee---ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEE-c
Confidence 124455545677763 3 67899999966 55566788899999999999999999766533111 01 1
Q ss_pred CCCCCCccccccC-ccccccchHHHhhhcCCCeEeeeCCCc
Q 010913 433 GGTSLPFWENVYG-FTMSCVGREVVQDAAGIPIVDVVDDHD 472 (497)
Q Consensus 433 ~~~~~~fw~~v~g-~~~~~~~~~~~~~~~~~p~v~~v~~~~ 472 (497)
+..+.+--+++|= -...++..++...+|. .|.+++...
T Consensus 232 P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~--~v~~v~~~~ 270 (315)
T PF08003_consen 232 PEDRYAKMRNVWFIPSVAALKNWLERAGFK--DVRCVDVSP 270 (315)
T ss_pred cCCcccCCCceEEeCCHHHHHHHHHHcCCc--eEEEecCcc
Confidence 1222222344442 2566777777777765 455555443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-13 Score=117.03 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=90.0
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+..++....+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++++.+++ .++++
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~ 73 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV--------------SNIVI 73 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC--------------CceEE
Confidence 344555556667889999999999999999987 446999999999999999999988776 47889
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+++.... +....+||+|++.. .. .....++..+.++|||||.+++..
T Consensus 74 ~~~~~~~~~---~~~~~~~D~v~~~~---~~---~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 74 VEGDAPEAL---EDSLPEPDRVFIGG---SG---GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EeccccccC---hhhcCCCCEEEECC---cc---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 988876531 12346899999753 21 345689999999999999998653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=134.92 Aligned_cols=111 Identities=20% Similarity=0.304 Sum_probs=90.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
....++....+.++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++. .++.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------------------~~~~ 79 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------------------PDCQ 79 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------------------CCCe
Confidence 3445566666778899999999999999999987 4459999999999999998763 3678
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+|+..+ .+..+||+|++.. ++.+..+...++..+.++|||||.+++..
T Consensus 80 ~~~~d~~~~-----~~~~~fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 80 FVEADIASW-----QPPQALDLIFANA---SLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEECchhcc-----CCCCCccEEEEcc---ChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 999999875 2456899999765 45555678899999999999999998653
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=126.75 Aligned_cols=104 Identities=31% Similarity=0.456 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~-~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||+|||+|.+++.+++.+.. +|+++|+++.+++.|++++..|++ .+++++.+|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~--------------~~v~~~~~d~~~~--- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL--------------ENVEVVQSDLFEA--- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC--------------TTEEEEESSTTTT---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc--------------ccccccccccccc---
Confidence 6789999999999999999998654 799999999999999999999998 3399999998764
Q ss_pred cCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li 419 (497)
++..+||+|+|+++.+.-.. ......++....++|||||.++
T Consensus 94 --~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 94 --LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp --CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 45789999999975322211 1246788999999999999986
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=128.11 Aligned_cols=130 Identities=24% Similarity=0.289 Sum_probs=93.1
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
|+..+...++..+-.++||+|||.|.++..||.+ +.+++++|+|+.+++.|+++.... ++|++
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~----------------~~V~~ 93 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL----------------PHVEW 93 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-----------------SSEEE
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC----------------CCeEE
Confidence 3344433333345578999999999999999998 459999999999999999987542 58999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCcccccc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVY 444 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~ 444 (497)
+++++... .|.++||+||..-++|+|....++..++..+...|+|||.|++.+... .....|.+..
T Consensus 94 ~~~dvp~~-----~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd---------~~c~~wgh~~ 159 (201)
T PF05401_consen 94 IQADVPEF-----WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD---------ANCRRWGHAA 159 (201)
T ss_dssp EES-TTT--------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H---------HHHHHTT-S-
T ss_pred EECcCCCC-----CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC---------CcccccCccc
Confidence 99999876 478999999988889988777889999999999999999999644311 1223577776
Q ss_pred C
Q 010913 445 G 445 (497)
Q Consensus 445 g 445 (497)
|
T Consensus 160 g 160 (201)
T PF05401_consen 160 G 160 (201)
T ss_dssp -
T ss_pred c
Confidence 6
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=116.40 Aligned_cols=97 Identities=29% Similarity=0.426 Sum_probs=78.7
Q ss_pred EEEEcCCCCHhHHHHHHcC---C-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 301 VMDIGCGTGILSLFAAQAG---A-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 301 VLDvGCGtG~ls~~la~~G---~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
|||+|||+|..+..+++.. . .+++|+|+|+.|++.|++.....+. +++++++|+.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---------------~~~~~~~D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---------------KVRFVQADARDLP--- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---------------TSEEEESCTTCHH---
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---------------ceEEEECCHhHCc---
Confidence 7999999999999999873 2 5999999999999999999877654 7899999998874
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG 416 (497)
...++||+|++.......+....+..+++.+.++|||||
T Consensus 63 -~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 -FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 567799999984332233667788999999999999998
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=135.64 Aligned_cols=102 Identities=23% Similarity=0.350 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.+++++..+++ ++.+..+|+....
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l---------------~v~~~~~D~~~~~-- 180 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL---------------NIRTGLYDINSAS-- 180 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC---------------ceEEEEechhccc--
Confidence 4556999999999999999999987 999999999999999999988775 6888888887653
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ +++||+|++..+.+++ .......++..+.++|+|||+++
T Consensus 181 --~-~~~fD~I~~~~vl~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 181 --I-QEEYDFILSTVVLMFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred --c-cCCccEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 3 6789999987643332 34577889999999999999965
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=137.12 Aligned_cols=115 Identities=25% Similarity=0.261 Sum_probs=91.2
Q ss_pred hHHHHHHHHhCCCC-CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSL-MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~~~-~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++..++.++....+ .++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++...
T Consensus 97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----------------- 159 (340)
T PLN02490 97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----------------- 159 (340)
T ss_pred hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----------------
Confidence 34455555554444 36789999999999999988876 446999999999999999887532
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+++++.+|++++ +++.++||+|++.. .+.+..+...+|.++.++|||||.+++
T Consensus 160 ~~i~~i~gD~e~l----p~~~~sFDvVIs~~---~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 160 KECKIIEGDAEDL----PFPTDYADRYVSAG---SIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred cCCeEEeccHHhC----CCCCCceeEEEEcC---hhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 3678899999886 47788999999754 455556778899999999999999874
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=137.35 Aligned_cols=110 Identities=27% Similarity=0.438 Sum_probs=83.3
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
|..-.+.|... ..+|++|||+|||||++++.+++.|+++|+|+|+++.+++.|++++..|++. .+
T Consensus 148 T~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-------------~~ 212 (295)
T PF06325_consen 148 TRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-------------DR 212 (295)
T ss_dssp HHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-------------TC
T ss_pred HHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-------------ee
Confidence 33344444443 4678999999999999999999999999999999999999999999999983 45
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.+. ...+ ....+||+|+++.+.. -+..++..+.++|+|||.+++
T Consensus 213 ~~v~--~~~~------~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 213 IEVS--LSED------LVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp EEES--CTSC------TCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEE
T ss_pred EEEE--Eecc------cccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEE
Confidence 5442 1122 3458999999986433 345677888999999999983
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=136.18 Aligned_cols=102 Identities=28% Similarity=0.447 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+|||+|++++.+++.|+++|+|+|+++.+++.|+++++.|++. ..++.-..+....
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-------------~~~~~~~~~~~~~--- 224 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-------------LLVQAKGFLLLEV--- 224 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-------------hhhhcccccchhh---
Confidence 489999999999999999999999999999999999999999999999872 1222222222222
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
....+||+||++-+.. -+..+...+.+.|||||+++++
T Consensus 225 --~~~~~~DvIVANILA~------vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 225 --PENGPFDVIVANILAE------VLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred --cccCcccEEEehhhHH------HHHHHHHHHHHHcCCCceEEEE
Confidence 2346999999885432 3457788899999999999843
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8e-13 Score=128.33 Aligned_cols=139 Identities=29% Similarity=0.367 Sum_probs=107.2
Q ss_pred hhhccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 256 KKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 256 ~~~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
......||+.++.++.+..+.. .| .+.+.......++.+|||||||+|.++..+++.|+ +|+++|+++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~ 85 (233)
T PRK05134 13 SALAARWWDPNGEFKPLHRINP--LR----LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV 85 (233)
T ss_pred HHHHHHHhccCCCcHHHHHhhH--HH----HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHH
Confidence 3456779999988877665443 22 23444444456789999999999999999999876 89999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 336 ATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 336 A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
|++++...++ .+.++.+++..+. ....++||+|++.. .+.+..++..+|..+.++|+||
T Consensus 86 a~~~~~~~~~---------------~~~~~~~~~~~~~---~~~~~~fD~Ii~~~---~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 86 ARLHALESGL---------------KIDYRQTTAEELA---AEHPGQFDVVTCME---MLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred HHHHHHHcCC---------------ceEEEecCHHHhh---hhcCCCccEEEEhh---HhhccCCHHHHHHHHHHHcCCC
Confidence 9988876654 5788888887753 12457899999654 5566677888999999999999
Q ss_pred cEEeccC
Q 010913 416 GAILPDT 422 (497)
Q Consensus 416 G~li~~~ 422 (497)
|.+++..
T Consensus 145 G~l~v~~ 151 (233)
T PRK05134 145 GLVFFST 151 (233)
T ss_pred cEEEEEe
Confidence 9998653
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=126.14 Aligned_cols=142 Identities=31% Similarity=0.392 Sum_probs=113.4
Q ss_pred hccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 010913 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 258 ~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~ 337 (497)
....||+.+..+..+..| +..|...+++.+..+....++.+|||+|||+|.++..+++.+. +|+|+|+++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~ 84 (224)
T TIGR01983 8 LAHEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAK 84 (224)
T ss_pred HHHHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence 345688888888877765 6677777777776653335688999999999999999998876 7999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 338 ~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+++..+++ .++.+..+++.++. ...+++||+|++.. .+.+..++..++..+.++|+|||.
T Consensus 85 ~~~~~~~~--------------~~~~~~~~d~~~~~---~~~~~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 85 LHAKKDPL--------------LKIEYRCTSVEDLA---EKGAKSFDVVTCME---VLEHVPDPQAFIRACAQLLKPGGI 144 (224)
T ss_pred HHHHHcCC--------------CceEEEeCCHHHhh---cCCCCCccEEEehh---HHHhCCCHHHHHHHHHHhcCCCcE
Confidence 98877654 26889999988763 11247899999654 556667888999999999999999
Q ss_pred EeccC
Q 010913 418 ILPDT 422 (497)
Q Consensus 418 li~~~ 422 (497)
+++..
T Consensus 145 l~i~~ 149 (224)
T TIGR01983 145 LFFST 149 (224)
T ss_pred EEEEe
Confidence 88654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-13 Score=130.78 Aligned_cols=107 Identities=22% Similarity=0.354 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|++++...++ ..+++++.+++.++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-------------~~~v~~~~~d~~~~ 121 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-------------PTPVDVIEGDIRDI 121 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-------------CCCeEEEeCChhhC
Confidence 57789999999999999888872 334999999999999999999987765 24799999999875
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
. + ..+|+|++....+++ .......++.++.+.|||||.+++..
T Consensus 122 ~----~--~~~D~vv~~~~l~~l-~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 122 A----I--ENASMVVLNFTLQFL-EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred C----C--CCCCEEehhhHHHhC-CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 3 358999976433332 33456789999999999999998543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=134.99 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=93.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.-.++++..++...+.+|||+|||+|.+++.+++. +..+|+++|.|+.+++.|+++++.|+... ..++
T Consensus 215 ~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~-----------~~~v 283 (378)
T PRK15001 215 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA-----------LDRC 283 (378)
T ss_pred hHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc-----------CceE
Confidence 33455666665555679999999999999999987 34599999999999999999998886410 1368
Q ss_pred EEEecchhhcccccCCCCCceeEEEecccccccc--ChhhHHHHHHHHhccccCCcEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL--YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~--~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.+|+... ++..+||+|+|++..+... .......++..+.++|+|||.+++.
T Consensus 284 ~~~~~D~l~~-----~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 284 EFMINNALSG-----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEcccccc-----CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9998887553 3456899999997543321 2234567899999999999998843
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.9e-13 Score=114.30 Aligned_cols=109 Identities=28% Similarity=0.386 Sum_probs=87.2
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
|.+|||+|||+|.+++.+++.+..+++|+|+++..++.|+.++..+++ .++++++++|+.++.. .
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-------------~~~~~~~~~D~~~~~~--~ 65 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-------------DDRVEVIVGDARDLPE--P 65 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-------------TTTEEEEESHHHHHHH--T
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-------------CceEEEEECchhhchh--h
Confidence 578999999999999999999856999999999999999999999887 3589999999988742 3
Q ss_pred CCCCceeEEEeccccccccC-----hhhHHHHHHHHhccccCCcEEecc
Q 010913 378 IQPHSVDVLVSEWMGYCLLY-----ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~-----~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++..+||+|++++....... ......++..+.++|||||.+++-
T Consensus 66 ~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 66 LPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp CTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 56789999999864322111 123467899999999999998843
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.5e-13 Score=141.62 Aligned_cols=111 Identities=24% Similarity=0.369 Sum_probs=91.4
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
++....+.++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|+++.... ..++.++.+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~---------------~~~v~~~~~ 321 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGR---------------KCSVEFEVA 321 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcC---------------CCceEEEEc
Confidence 444445667899999999999999999987 55 8999999999999998876432 247999999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
|+... +++.++||+|+|.. .+.|..++..++.++.++|||||.+++..
T Consensus 322 d~~~~----~~~~~~fD~I~s~~---~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 322 DCTKK----TYPDNSFDVIYSRD---TILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CcccC----CCCCCCEEEEEECC---cccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 98876 46778999999865 55666788999999999999999998553
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=125.34 Aligned_cols=119 Identities=27% Similarity=0.354 Sum_probs=97.6
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..|++.++....+.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++.... ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---------------~~ 69 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---------------GP 69 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---------------CC
Confidence 4567777788888899999999999999999998872 459999999999999998873222 24
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
++.++.+++..+ +++.++||+|++.. ++.+..++..++..+.++|||||.+++..+
T Consensus 70 ~~~~~~~d~~~~----~~~~~~~D~v~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 70 NVEFVRGDADGL----PFPDGSFDAVRSDR---VLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ceEEEecccccC----CCCCCCceEEEEec---hhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 789999998876 36678999999654 566667889999999999999999986543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=121.88 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++..+++ +++++.+|+.+.
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---------------~~~~~~~d~~~~-- 78 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV---------------GLDVVMTDLFKG-- 78 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC---------------ceEEEEcccccc--
Confidence 45678999999999999999999887 999999999999999999987765 588899987664
Q ss_pred ccCCCCCceeEEEeccccccccC------------------hhhHHHHHHHHhccccCCcEEec
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLY------------------ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~------------------~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++||+|++++..+.... ......++.++.++|||||.+++
T Consensus 79 ----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 79 ----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred ----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 2458999999864321111 11246789999999999999874
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=139.85 Aligned_cols=111 Identities=22% Similarity=0.375 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
...++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++....+ .++.++++|+.++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---------------~~ie~I~gDa~dL 479 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---------------RSWNVIKGDAINL 479 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---------------CCeEEEEcchHhC
Confidence 3457899999999999999888875 44599999999999999998865544 3688899998876
Q ss_pred ccccCCCCCceeEEEecccccccc----------ChhhHHHHHHHHhccccCCcEEecc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLL----------YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~----------~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.. .+++++||+|+++++.+.+. ....+..+|.++.++|||||.+++.
T Consensus 480 p~--~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 480 SS--SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred cc--ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 31 25678999999875333221 1346789999999999999999853
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=124.25 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-hhccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-EELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-~~l~~ 374 (497)
++.+|||+|||+|.++..+++. +..+|+|||+|+.+++.|++++..+++ .++.++++|+ ..+..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~--------------~~v~~~~~d~~~~l~~ 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL--------------TNLRLLCGDAVEVLLD 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC--------------CCEEEEecCHHHHHHH
Confidence 5689999999999999999887 445899999999999999999988776 5799999999 66531
Q ss_pred ccCCCCCceeEEEecccccccc--Ch---hhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLL--YE---SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~--~~---~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.+++++||+|++........ +. .....++.++.++|||||.+++.+
T Consensus 106 --~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 106 --MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred --HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 15678899999753211000 10 024678999999999999998544
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=121.71 Aligned_cols=117 Identities=26% Similarity=0.364 Sum_probs=92.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.+..++....+.++.+|||+|||+|.+++.+++. | ..+|+++|+++.+++.|+++++.+++. .++
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-------------~~v 94 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-------------NNI 94 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------CCe
Confidence 3444456667889999999999999999999875 3 359999999999999999999988852 578
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.++.+|+.+.. +....+||+|++.. ....+..++..+.+.|||||.++++..
T Consensus 95 ~~~~~d~~~~l---~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 95 VLIKGEAPEIL---FTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred EEEEechhhhH---hhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 99999987642 22246899999642 224567899999999999999985443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-12 Score=129.76 Aligned_cols=100 Identities=26% Similarity=0.444 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|++++.+++.|+.+|+|+|+++.+++.|++++..+++. .++.++.++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-------------~~~~~~~~~~~~---- 220 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-------------DRLQVKLIYLEQ---- 220 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-------------cceEEEeccccc----
Confidence 467999999999999999999998889999999999999999999988872 456777665322
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
...++||+|+++.+. ..+..++..+.++|||||.+++
T Consensus 221 --~~~~~fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 221 --PIEGKADVIVANILA------EVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred --ccCCCceEEEEecCH------HHHHHHHHHHHHHcCCCcEEEE
Confidence 346789999987531 3456788999999999999984
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-14 Score=117.17 Aligned_cols=98 Identities=29% Similarity=0.318 Sum_probs=63.4
Q ss_pred EEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCC
Q 010913 302 MDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQP 380 (497)
Q Consensus 302 LDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~ 380 (497)
||||||+|.++..++.. +..+++|+|+|+.|++.|++++...+. .+...+.....+... ....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--------------DNFERLRFDVLDLFD--YDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----------------EEEEE--SSS-----CCC-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------------cceeEEEeecCChhh--cccc
Confidence 79999999999999888 445999999999999889988877653 344444444444321 1223
Q ss_pred CceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 381 HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 381 ~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
++||+|++.. +++|.+++..++..+.++|||||+|
T Consensus 65 ~~fD~V~~~~---vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASN---VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE----TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhh---hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 6999999654 6666688999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-13 Score=119.98 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||||||+|.++..+++.|. +|+|+|+++.+++. . .+.....+....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~------------------~~~~~~~~~~~~-- 72 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R------------------NVVFDNFDAQDP-- 72 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T------------------TSEEEEEECHTH--
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h------------------hhhhhhhhhhhh--
Confidence 57889999999999999999999998 99999999999876 1 122222222232
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+.+.++||+|+|.. ++.|..++..+|..+.++|||||.+++....
T Consensus 73 --~~~~~~fD~i~~~~---~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 73 --PFPDGSFDLIICND---VLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HCHSSSEEEEEEES---SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --hccccchhhHhhHH---HHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 24678999999765 6667778999999999999999999965543
|
... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=123.69 Aligned_cols=107 Identities=30% Similarity=0.347 Sum_probs=86.1
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+.++.+|||+|||+|.++..+++.|+.+|+|+|+|+.+++.|++++..+++ ++.++.+|+.+.
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---------------~~~~~~~d~~~~ 96 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---------------DVDVRRGDWARA 96 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---------------eeEEEECchhhh
Confidence 34567889999999999999999998777999999999999999999988765 578899988764
Q ss_pred ccccCCCCCceeEEEeccccccccC-------------------hhhHHHHHHHHhccccCCcEEec
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLY-------------------ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~-------------------~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++..+||+|++++. |.... ...+..++..+.++|||||++++
T Consensus 97 -----~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 97 -----VEFRPFDVVVSNPP-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred -----ccCCCeeEEEECCC-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 45678999999852 22111 11246688889999999999984
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=119.34 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=88.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
..+..++..+.+.++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+.+++.|++++..+++ .++
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~--------------~~i 83 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC--------------GNI 83 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--------------CCe
Confidence 344455566666788999999999999999999873 45999999999999999999988876 468
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+++.+++... + ..+||+|++.. .. ..+..++..+.++|+|||.+++
T Consensus 84 ~~~~~d~~~~-----~-~~~~D~v~~~~---~~---~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 84 DIIPGEAPIE-----L-PGKADAIFIGG---SG---GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred EEEecCchhh-----c-CcCCCEEEECC---Cc---cCHHHHHHHHHHhcCCCeEEEE
Confidence 9999887432 2 35799999653 22 2356788889999999999985
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=126.48 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||||||||.++..+++.+..+|+|+|+|+.|++.|++. ..+++++++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----------------------~~~~~~d~~~l---- 104 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----------------------DDKVVGSFEAL---- 104 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----------------------cceEEechhhC----
Confidence 4789999999999999999988323999999999999988753 13467888876
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG 416 (497)
|+++++||+|++.. .+.+..++..++.++.|+|||.+
T Consensus 105 p~~d~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 58899999999654 66677889999999999999954
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=119.91 Aligned_cols=102 Identities=27% Similarity=0.334 Sum_probs=86.6
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE-EEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME-VVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~-~i~gd~~~l~~~l~ 377 (497)
..||+||||||..-.+.--.+..+|+++|+++.|-++|.+.++++.. .++. |+.++.+++. .
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~--------------~~~~~fvva~ge~l~---~ 140 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP--------------LQVERFVVADGENLP---Q 140 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC--------------cceEEEEeechhcCc---c
Confidence 46899999999987777644445999999999999999999988753 4566 9999999985 4
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++++|+||+.. +|-...++...|.++.|+|||||++++
T Consensus 141 l~d~s~DtVV~Tl---vLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 141 LADGSYDTVVCTL---VLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred cccCCeeeEEEEE---EEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 7899999999765 666678899999999999999999984
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=124.87 Aligned_cols=114 Identities=23% Similarity=0.335 Sum_probs=93.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
......++|||+|||+|.+++++|++ ...+|+|||+.+.+++.|+++++.|++ ..+|+++++|+.+
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-------------~~ri~v~~~Di~~ 106 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-------------EERIQVIEADIKE 106 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-------------hhceeEehhhHHH
Confidence 34445899999999999999999998 646999999999999999999999988 4799999999999
Q ss_pred cccccCCCCCceeEEEeccccccccC---------------hhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLY---------------ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~---------------~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+... ....+||+|+|++..|-... ..++..++....++|||||.+.+-
T Consensus 107 ~~~~--~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 107 FLKA--LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred hhhc--ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 8642 33457999999985443211 124688999999999999998843
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=124.62 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|++++...+. ..+++++++|+.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-------------~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-------------EIPVEILCNDIRHV 118 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-------------CCCeEEEECChhhC
Confidence 47789999999999999999885 235899999999999999999876543 24789999999886
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
. + ..+|+|++....+. ....+...++.++.++|||||.+++..
T Consensus 119 ~----~--~~~d~v~~~~~l~~-~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 119 E----I--KNASMVILNFTLQF-LPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred C----C--CCCCEEeeecchhh-CCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 3 3 35899886542222 233457889999999999999998553
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=120.68 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=86.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.....+++.+.+.++.+|||||||+|..+..+++. + ..+|+|+|+++.+++.|++++..+++. .+
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-------------~~ 125 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-------------GV 125 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------Cc
Confidence 34455566666778899999999999999998876 3 358999999999999999999888762 46
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++.+|+.+.. ....+||+|++... +. .+..++.+.|+|||+|++
T Consensus 126 v~~~~~d~~~~~----~~~~~fD~Ii~~~~---~~------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 126 VEVYHGDGKRGL----EKHAPFDAIIVTAA---AS------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred EEEEECCcccCC----ccCCCccEEEEccC---cc------hhhHHHHHhcCcCcEEEE
Confidence 899999987642 23568999997642 21 122456789999999974
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=124.46 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
++|||||||+|.++..+++. +..+|+|+|+|+.++..|++++...|+ .++++++.+|+... +
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-------------~~~i~~~~~d~~~~----~ 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-------------QGRIRIFYRDSAKD----P 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-------------CcceEEEecccccC----C
Confidence 47999999999999999887 345899999999999999999988887 36899999998654 2
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+ +++||+|++.. ++.+..+...++..+.++|||||.+++..
T Consensus 64 ~-~~~fD~I~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 F-PDTYDLVFGFE---VIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred C-CCCCCEeehHH---HHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 45899999755 34445677899999999999999998543
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=122.85 Aligned_cols=117 Identities=29% Similarity=0.430 Sum_probs=94.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.++..++......++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|++++..+++ ..+
T Consensus 38 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------~~~ 104 (239)
T PRK00216 38 VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-------------SGN 104 (239)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-------------ccC
Confidence 344445555555678999999999999999999885 36999999999999999998866544 257
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.+++.++. ++.++||+|++. +++.+..++..++..+.++|+|||.+++
T Consensus 105 ~~~~~~d~~~~~----~~~~~~D~I~~~---~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 105 VEFVQGDAEALP----FPDNSFDAVTIA---FGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred eEEEecccccCC----CCCCCccEEEEe---cccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 899999998763 556789999954 4666677889999999999999999874
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-12 Score=121.34 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=86.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.....++....+.++.+|||||||+|.++..+++. |. .+|+++|+++.+++.|+++++..++ .+
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--------------~~ 128 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--------------DN 128 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CC
Confidence 34455666667789999999999999999998887 43 5999999999999999999988876 57
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++.+|+.... .+..+||+|++.. ... .+...+.+.|||||+++.
T Consensus 129 v~~~~gd~~~~~----~~~~~fD~I~~~~---~~~------~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 129 VEVIVGDGTLGY----EENAPYDRIYVTA---AGP------DIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred eEEEECCcccCC----CcCCCcCEEEECC---Ccc------cchHHHHHhhCCCcEEEE
Confidence 999999987642 3457899999653 221 123455678999999884
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-12 Score=121.56 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=85.6
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...++..+.+.++.+|||||||+|.++..+++... .+|+|+|+++.+++.|++++..+++ ++++
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~--------------~~v~ 131 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL--------------DNVI 131 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC--------------CCeE
Confidence 34455556678899999999999999999998732 4699999999999999999999887 5799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.+.. ....+||+|++.. .. ..+...+.+.|+|||+++..
T Consensus 132 ~~~~d~~~~~----~~~~~fD~Ii~~~---~~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 132 VIVGDGTQGW----EPLAPYDRIYVTA---AG------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EEECCcccCC----cccCCCCEEEEcC---Cc------ccccHHHHHhcCcCcEEEEE
Confidence 9999987642 2346899999653 21 12334567889999998843
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=122.55 Aligned_cols=102 Identities=32% Similarity=0.420 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.++..+++... +++.++.+|+.+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~-- 92 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------------------ENVQFICGDAEKL-- 92 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------------------CCCeEEecchhhC--
Confidence 456899999999999999999885 3579999999999988887642 3678999999886
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++.++||+|++.. ++.+..++..++..+.++|+|||.+++..
T Consensus 93 --~~~~~~fD~vi~~~---~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 93 --PLEDSSFDLIVSNL---ALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --CCCCCceeEEEEhh---hhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 36778999999765 55666788899999999999999998543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-12 Score=118.98 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+.+|||||||+|.++..+|+. +...|+|||+++.+++.|++++...++ +++.++++|+.++...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l--------------~ni~~i~~d~~~~~~~ 81 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL--------------KNLHVLCGDANELLDK 81 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC--------------CCEEEEccCHHHHHHh
Confidence 4569999999999999999987 445999999999999999999988877 5899999999875311
Q ss_pred cCCCCCceeEEEeccccccc--cCh---hhHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCL--LYE---SMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l--~~~---~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.++.+++|.|+++...... .|. -....++..+.++|||||.|++.+.
T Consensus 82 -~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 82 -FFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred -hCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 1345689999965321100 000 0125789999999999999985543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=126.96 Aligned_cols=112 Identities=27% Similarity=0.300 Sum_probs=88.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
..+.+.....+.+|.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|++++. ++ .++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l---------------~v~ 216 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL---------------PVE 216 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC---------------eEE
Confidence 3445566677789999999999999999999987 66 99999999999999998863 32 478
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+..+|..++ .++||+|+|..+...+ ....+..++..+.++|||||.+++..
T Consensus 217 ~~~~D~~~l-------~~~fD~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 217 IRLQDYRDL-------NGQFDRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEECchhhc-------CCCCCEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 888887653 3689999987643322 23456789999999999999998643
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=118.64 Aligned_cols=114 Identities=26% Similarity=0.404 Sum_probs=92.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.++..++......++.+|||+|||+|.++..+++.+. .+++|+|+++.++..++++.. . ..+
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-------------~~~ 89 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-------------PLN 89 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-------------CCC
Confidence 4455555555556889999999999999999998854 489999999999999888764 1 247
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.+++.+.. ++.++||+|++.. .+.+..++..++..+.++|+|||.+++
T Consensus 90 i~~~~~d~~~~~----~~~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 90 IEFIQADAEALP----FEDNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred ceEEecchhcCC----CCCCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 899999998763 5667899999643 566677889999999999999999984
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=112.85 Aligned_cols=118 Identities=29% Similarity=0.366 Sum_probs=97.8
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
+..|...+..+.+.+|.+++|||||||.+++.++.. +..+|+|+|.++.+++..++++++.|+ ++
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--------------~n 85 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV--------------DN 85 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC--------------Cc
Confidence 345666777888899999999999999999999976 446999999999999999999999997 79
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+.++.|++.+.. + ...++|.|+ ++-. ..++.+|..+...|||||+|+.+..++
T Consensus 86 ~~vv~g~Ap~~L---~-~~~~~daiF---IGGg----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 86 LEVVEGDAPEAL---P-DLPSPDAIF---IGGG----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred EEEEeccchHhh---c-CCCCCCEEE---ECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 999999998863 2 122799999 4323 467889999999999999999655443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=126.77 Aligned_cols=117 Identities=26% Similarity=0.290 Sum_probs=94.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....+.......+|.+|||+|||||.+++.++..|+ +|+|+|+++.|+..|+.+++..|+ .++.+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~--------------~~i~~ 234 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGI--------------EDFFV 234 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCC--------------CCCeE
Confidence 444555555677899999999999999999888877 899999999999999999998887 34889
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccc----c---ChhhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCL----L---YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l----~---~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.++ +++.++||+|+++++ |.. . .......++..+.++|||||.+++.
T Consensus 235 ~~~D~~~l----~~~~~~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 235 KRGDATKL----PLSSESVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred EecchhcC----CcccCCCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 99999886 356789999999853 221 1 1133578999999999999998743
|
This family is found exclusively in the Archaea. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=122.41 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++++..+++ .+++.++.+|+.+.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-------------~~~i~~~~~D~~~~-- 184 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-------------EDRVTLIQSDLFAA-- 184 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEECchhhc--
Confidence 34579999999999999999987 334999999999999999999999887 25799999998653
Q ss_pred ccCCCCCceeEEEecccccc----------ccCh------------hhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYC----------LLYE------------SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~----------l~~~------------~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++..+||+|++++.-.- +.++ .....++..+.++|+|||.+++..
T Consensus 185 ---~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 185 ---LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred ---cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 44568999999853110 1111 123567888999999999998544
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.9e-12 Score=122.51 Aligned_cols=95 Identities=32% Similarity=0.505 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|++++.+++.|+.+|+|+|+|+.+++.|++++..+++. .++.+..+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-------------~~~~~~~~-------- 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-------------LNVYLPQG-------- 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEccC--------
Confidence 578999999999999999999888878999999999999999999888761 23433322
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
..+||+|+++... ..+..++..+.++|||||.++++
T Consensus 177 ----~~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 177 ----DLKADVIVANILA------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred ----CCCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 1269999986421 23567888999999999999853
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=126.35 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=87.9
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
-.+.++.........+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.|+++++.+++ ...
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l---------------~~~ 248 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL---------------EGE 248 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCE
Confidence 33445554444445689999999999999999883 35899999999999999999999886 346
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+|+... ..++||+|+|+++.+.... ......++..+.++|||||.+++
T Consensus 249 ~~~~D~~~~------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 249 VFASNVFSD------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEEcccccc------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 677776542 2578999999875432211 24567899999999999999974
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=117.91 Aligned_cols=115 Identities=30% Similarity=0.311 Sum_probs=88.2
Q ss_pred HHHHHHhCCC--CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPS--LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~--~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
+++.++..+. ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.|+..|++++...+. ..++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-------------~~~i 106 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-------------AGNV 106 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CCce
Confidence 3344443333 46789999999999999999998876 999999999999999999877664 2479
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++++++..+ + ++||+|++....+++ ....+..++.++.+++++++++.+.
T Consensus 107 ~~~~~d~~~~------~-~~fD~ii~~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 107 EFEVNDLLSL------C-GEFDIVVCMDVLIHY-PASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EEEECChhhC------C-CCcCEEEEhhHHHhC-CHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999998775 2 789999975432222 2356788899999999987776643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-12 Score=133.49 Aligned_cols=116 Identities=23% Similarity=0.338 Sum_probs=89.3
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
..++......++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++.. +. .+++.+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~---~~-------------~~~i~~~~ 89 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESIN---GH-------------YKNVKFMC 89 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHh---cc-------------CCceEEEE
Confidence 3455555556778999999999999999999854 9999999999998776532 21 14789999
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+|+.... ++++.++||+|++.++.+.+ ....+..++.++.++|||||++++..
T Consensus 90 ~d~~~~~--~~~~~~~fD~I~~~~~l~~l-~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 90 ADVTSPD--LNISDGSVDLIFSNWLLMYL-SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ecccccc--cCCCCCCEEEEehhhhHHhC-CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9986432 25677899999988744433 23457889999999999999998643
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-12 Score=117.87 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=92.6
Q ss_pred hhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 281 r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
|+.-.++ ++....+.+..+|.|+|||+|..+..++++ +...|+|+|-|+.|++.|+++.
T Consensus 15 RtRPa~d-Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------------- 74 (257)
T COG4106 15 RTRPARD-LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------------- 74 (257)
T ss_pred ccCcHHH-HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------------------
Confidence 3444444 444556678899999999999999999998 6569999999999999997764
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.+++|..+|+.++. +...+|+|+++. ++...++-..+|..+...|.|||.|....
T Consensus 75 p~~~f~~aDl~~w~-----p~~~~dllfaNA---vlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 75 PDATFEEADLRTWK-----PEQPTDLLFANA---VLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred CCCceecccHhhcC-----CCCccchhhhhh---hhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 57899999999984 678999999987 44444566778888999999999998543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=115.49 Aligned_cols=116 Identities=26% Similarity=0.346 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
..+..++..+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++..+++ .++
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~--------------~~v 92 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV--------------KNV 92 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CCe
Confidence 34445666667778899999999999999999876 345999999999999999999988876 479
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+++.+|+.+.- +.....+|.|+... ...+..++..+.++|+|||.++....
T Consensus 93 ~~~~~d~~~~~---~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 93 EVIEGSAPECL---AQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEECchHHHH---hhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 99999986531 11123456665321 13457889999999999999985544
|
|
| >PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-13 Score=111.03 Aligned_cols=95 Identities=34% Similarity=0.636 Sum_probs=25.1
Q ss_pred ceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc-ccccccCCccCCHHHHHHHHHHhcc
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE-NRCWICGLTCQSNQDLQNHLHEAYN 126 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~-~~c~~C~~~~~~~~~~~~Hm~~~~~ 126 (497)
.|+||+..|+++..++.||+..|+|++.... .+....++++|++.++.. ..|..|+..|.+..+|+.||..+.|
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H 75 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQK-----YLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHH 75 (100)
T ss_dssp -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTT
T ss_pred Ccccccccccccccccccccccccccccccc-----ccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccC
Confidence 5999999999999999999999999988422 223677899999999987 6699999999999999999999987
Q ss_pred Cccc---CCCCCCCCcccccccCc
Q 010913 127 LKET---KLRWDKEKYLKPFMQDD 147 (497)
Q Consensus 127 ~~~~---~~~w~~d~yl~Pv~e~D 147 (497)
.... ...|++-+++.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~y~~~~~~ 99 (100)
T PF12756_consen 76 KKRNSESEESWEEFEKFYDFWSND 99 (100)
T ss_dssp TC-S--------------------
T ss_pred CCcccccccccccccccccccccC
Confidence 7742 34588999999998876
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=117.55 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=81.1
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
...+.+|.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.++++.. .++.++.+|+.
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----------------~nv~~i~~D~~ 130 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----------------KNIIPILADAR 130 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----------------CCcEEEECCCC
Confidence 467789999999999999999999987 4458999999999999887776432 36888999986
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
......++ ..+||+|++.. ........++..+.++|||||.+++.
T Consensus 131 ~~~~~~~l-~~~~D~i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 131 KPERYAHV-VEKVDVIYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred Ccchhhhc-cccCCEEEECC-----CChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 53111122 35699999653 11122345689999999999999854
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=116.82 Aligned_cols=116 Identities=25% Similarity=0.176 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC-CCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE-GNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~-~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||.|..+..+|++|. .|+|||+|+.+++.|.+ ++++.....+.. .......+|+++++|+.++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~- 107 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT- 107 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC-
Confidence 4678999999999999999999999 89999999999987533 333321110000 00011357999999998874
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+...++||.|+-.... +.+.......++..+.++|||||.++
T Consensus 108 --~~~~~~fD~i~D~~~~-~~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 108 --AADLGPVDAVYDRAAL-IALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred --cccCCCcCEEEechhh-ccCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 1123579999865422 23356677889999999999999866
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=126.21 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
....+.++||||||+|.++..+|+. +...++|+|+++.++..|.+++..+++ .++.++++|+..+
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL--------------~NV~~i~~DA~~l 184 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL--------------KNLLIINYDARLL 184 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEECCHHHh
Confidence 3345679999999999999999988 446999999999999999999998887 5899999999875
Q ss_pred ccccCCCCCceeEEEeccccccccChhh------HHHHHHHHhccccCCcEEeccCce
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESM------LSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~------l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.. .++++++|.|++.. ...+... ...++.++.|+|+|||.+.+.+..
T Consensus 185 l~--~~~~~s~D~I~lnF---PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 185 LE--LLPSNSVEKIFVHF---PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hh--hCCCCceeEEEEeC---CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 32 36789999999653 2222111 267899999999999999865543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=128.19 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+|||||.+++.++..|+.+|++||+|+.+++.|++++..|++. .++++++++|+.++...
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~------------~~~v~~i~~D~~~~l~~ 286 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD------------LSKAEFVRDDVFKLLRT 286 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CCcEEEEEccHHHHHHH
Confidence 468999999999999999888778889999999999999999999999872 13799999999876311
Q ss_pred cCCCCCceeEEEeccccccccCh-------hhHHHHHHHHhccccCCcEEeccCcee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYE-------SMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~-------~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+.....+||+|+++++.+. ... .....++....++|+|||.|+..+|+-
T Consensus 287 ~~~~~~~fDlVilDPP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 287 YRDRGEKFDVIVMDPPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred HHhcCCCCCEEEECCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 1112468999999975432 121 123455567789999999999766654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-12 Score=114.65 Aligned_cols=138 Identities=29% Similarity=0.376 Sum_probs=115.2
Q ss_pred hhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCC
Q 010913 270 GIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDR 349 (497)
Q Consensus 270 ~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~ 349 (497)
.+|-.++.|..|...|+.+|..... .++.|+|+|+|++|+.+|.+ +.+|+||+.+|.....|.+++.-+|+
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~---- 79 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD---- 79 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC----
Confidence 4788899999999999999987653 78999999999999999998 78999999999999999999888887
Q ss_pred CCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEee
Q 010913 350 PQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAG 429 (497)
Q Consensus 350 ~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~ 429 (497)
.++.++.||+.+.+ + ...|+|+|+.+.-.|..+.. -.++.++...||..|.++|.....-..+
T Consensus 80 ----------~n~evv~gDA~~y~----f--e~ADvvicEmlDTaLi~E~q-VpV~n~vleFLr~d~tiiPq~v~~~a~p 142 (252)
T COG4076 80 ----------VNWEVVVGDARDYD----F--ENADVVICEMLDTALIEEKQ-VPVINAVLEFLRYDPTIIPQEVRIGANP 142 (252)
T ss_pred ----------cceEEEeccccccc----c--cccceeHHHHhhHHhhcccc-cHHHHHHHHHhhcCCccccHHHhhccCc
Confidence 68999999999874 4 67899999976656655544 4488888889999999998766554444
Q ss_pred ecCC
Q 010913 430 FGRG 433 (497)
Q Consensus 430 ~~~~ 433 (497)
+..+
T Consensus 143 v~~~ 146 (252)
T COG4076 143 VRRP 146 (252)
T ss_pred cccC
Confidence 4443
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-11 Score=121.50 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=83.8
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.+++ .++++++++|+.+.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-------------~~~i~~~~~D~~~~---- 196 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-------------EDRVTLIESDLFAA---- 196 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------CCcEEEEECchhhh----
Confidence 368999999999999999987 345999999999999999999998887 24799999998653
Q ss_pred CCCCCceeEEEecccccc----------ccCh------------hhHHHHHHHHhccccCCcEEecc
Q 010913 377 QIQPHSVDVLVSEWMGYC----------LLYE------------SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~----------l~~~------------~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.++||+|++++.-.. ..++ .....++..+.++|+|||.+++.
T Consensus 197 -l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 197 -LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred -CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34568999999852110 0111 12357788899999999999854
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-11 Score=120.57 Aligned_cols=124 Identities=25% Similarity=0.345 Sum_probs=90.5
Q ss_pred hHHHHHHHHhCC-CCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENP-SLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~-~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++.+...++... ...++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|+++++.+++ .
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-------------~ 164 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-------------E 164 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------C
Confidence 444444444322 11233799999999999999999873 35999999999999999999998887 2
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccc----------cccCh------------hhHHHHHHHHhccccCCcE
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGY----------CLLYE------------SMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~----------~l~~~------------~~l~~vL~~~~r~LkpgG~ 417 (497)
.++.++++|+.+. ++..+||+|+|++.-. ...++ .....++..+.++|+|||.
T Consensus 165 ~~v~~~~~d~~~~-----~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 165 HRVEFIQSNLFEP-----LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred CcEEEEECchhcc-----CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 4699999998653 4445899999985211 11121 1356788889999999999
Q ss_pred EeccCc
Q 010913 418 ILPDTA 423 (497)
Q Consensus 418 li~~~~ 423 (497)
+++...
T Consensus 240 l~~e~g 245 (284)
T TIGR00536 240 LVCEIG 245 (284)
T ss_pred EEEEEC
Confidence 985444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=112.22 Aligned_cols=107 Identities=28% Similarity=0.378 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++.+ .++.++.+|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~------------~~~~~~~~d~~~~--- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRN------------NGVEVIRSDLFEP--- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCC------------cceEEEecccccc---
Confidence 5788999999999999999999865 99999999999999999998877621 1288888887653
Q ss_pred cCCCCCceeEEEecccccc--------------cc----ChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYC--------------LL----YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~--------------l~----~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+...+||+|+++..... +. ....+..++.++.++|||||.+++
T Consensus 86 --~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 86 --FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred --ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 44558999998753211 00 122356789999999999999874
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=115.46 Aligned_cols=117 Identities=25% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQS-EGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~-~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..++.+|||+|||.|..+..||+.|. +|+|||+|+.+++.|. .++++.....+. ........+|+++++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHH---HHcCCCccccccccccccccCceEEEECcccCCC
Confidence 35678999999999999999999999 8999999999998764 234442111000 001112357999999998874
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+...+.||.|+...+.. .+..+....++..+.++|+|||+++
T Consensus 111 ---~~~~~~fd~v~D~~~~~-~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 ---AADLADVDAVYDRAALI-ALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ---cccCCCeeEEEehHhHh-hCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 12235899999754332 3456778899999999999999754
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=118.26 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=94.6
Q ss_pred hhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 281 r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
+.+.-.+.++.++....+.+|||+|||.|.+++.+++. +..+|+.+|+|..+++.|++++..|++
T Consensus 142 ~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~-------------- 207 (300)
T COG2813 142 KLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV-------------- 207 (300)
T ss_pred CcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC--------------
Confidence 34556777888888777779999999999999999998 567999999999999999999999987
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEe
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li 419 (497)
.+..++..++.+- ... +||+|+|++..+.-... .-..+++.+..++|++||.|.
T Consensus 208 ~~~~v~~s~~~~~-----v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 208 ENTEVWASNLYEP-----VEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred CccEEEEeccccc-----ccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 3336777776553 333 99999999865432111 112488999999999999987
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-11 Score=118.60 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCCHh-HHHHH-Hc-CCCEEEEEeCCHHHHHHHHHHHHh-CCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGIL-SLFAA-QA-GASRVIAVEASEKMAAVATQIAKD-NDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~l-s~~la-~~-G~~~V~gvD~S~~~i~~A~~~~~~-~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++++|+|||||.|.+ ++.++ ++ +.++++|+|+++.+++.|++.+.. .++ .++|+|..+|+.+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-------------~~rV~F~~~Da~~ 188 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-------------SKRMFFHTADVMD 188 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-------------cCCcEEEECchhh
Confidence 3789999999998855 33333 34 446899999999999999999964 676 3689999999987
Q ss_pred cccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEeccC
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.. ...+.||+|++. ++.+. ++...++..+.+.|+|||.++...
T Consensus 189 ~~----~~l~~FDlVF~~----ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VT----ESLKEYDVVFLA----ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cc----cccCCcCEEEEe----cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 52 234689999975 33333 678999999999999999999554
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-11 Score=115.94 Aligned_cols=118 Identities=25% Similarity=0.260 Sum_probs=88.8
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
..+...++.... ..+.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++..+++ ++
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~ 138 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL--------------DN 138 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------Ce
Confidence 334444444332 34569999999999999999987 445999999999999999999988886 47
Q ss_pred eEEEecchhhcccccCCCCCceeEEEecccccccc-----------C------------hhhHHHHHHHHhccccCCcEE
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-----------Y------------ESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-----------~------------~~~l~~vL~~~~r~LkpgG~l 418 (497)
+.++.+|+.+. ++.++||+|+++++..... + ......++..+.++|+|||.+
T Consensus 139 ~~~~~~d~~~~-----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~ 213 (251)
T TIGR03534 139 VTFLQSDWFEP-----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL 213 (251)
T ss_pred EEEEECchhcc-----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEE
Confidence 99999998763 4568999999975321100 0 011246788999999999999
Q ss_pred ec
Q 010913 419 LP 420 (497)
Q Consensus 419 i~ 420 (497)
++
T Consensus 214 ~~ 215 (251)
T TIGR03534 214 LL 215 (251)
T ss_pred EE
Confidence 84
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=114.37 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.++.+|||||||+|.++..+++. +..+|+|||+|+.|++.|+++. .++.++++++.+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------------------~~~~~~~~d~~~-- 99 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------------------PNINIIQGSLFD-- 99 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------------------CCCcEEEeeccC--
Confidence 356789999999999999999887 4459999999999999998753 246778888766
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+++.++||+|++..+.+++ ....+..++.++.|++ ++.++
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl-~p~~~~~~l~el~r~~--~~~v~ 139 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHI-NPDNLPTAYRELYRCS--NRYIL 139 (204)
T ss_pred ---CCCCCCEEEEEECChhhhC-CHHHHHHHHHHHHhhc--CcEEE
Confidence 3678899999987644333 3456788999999988 34555
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-11 Score=112.08 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred hHHHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 282 ~~~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
++..++.++.... ..++.+|||+|||+|.+++.++..++.+|++||.++.+++.|+++++.+++ .
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~--------------~ 102 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA--------------G 102 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC--------------C
Confidence 3444444444332 246789999999999999987666777999999999999999999998886 4
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHh--ccccCCcEEeccCc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD--QWLKPGGAILPDTA 423 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~--r~LkpgG~li~~~~ 423 (497)
++.++++|+.+.. +....+||+|+++++ |. ......++..+. .+|+|+|++++...
T Consensus 103 ~v~~~~~D~~~~l---~~~~~~fDlV~~DPP-y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 103 NARVVNTNALSFL---AQPGTPHNVVFVDPP-FR---KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred cEEEEEchHHHHH---hhcCCCceEEEECCC-CC---CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 7999999997752 122456999999975 21 122344455443 45899999986544
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-11 Score=124.15 Aligned_cols=131 Identities=22% Similarity=0.279 Sum_probs=96.4
Q ss_pred chhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCC
Q 010913 269 FGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWW 347 (497)
Q Consensus 269 ~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~ 347 (497)
|.+....+-.+..|+.+.+.++... .++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.++.
T Consensus 225 f~V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-- 300 (423)
T PRK14966 225 FAVNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-- 300 (423)
T ss_pred EEeCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--
Confidence 3344444555666778888777654 35679999999999999998875 456999999999999999999987764
Q ss_pred CCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEecccccccc-----------Ch------------hhHHHH
Q 010913 348 DRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-----------YE------------SMLSSV 404 (497)
Q Consensus 348 ~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-----------~~------------~~l~~v 404 (497)
++.++++|+.+.. .+ ..++||+|+|+++ |.-. ++ .....+
T Consensus 301 -------------rV~fi~gDl~e~~--l~-~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~I 363 (423)
T PRK14966 301 -------------RVEFAHGSWFDTD--MP-SEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTL 363 (423)
T ss_pred -------------cEEEEEcchhccc--cc-cCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHH
Confidence 7999999986542 11 2457999999874 2110 00 123467
Q ss_pred HHHHhccccCCcEEec
Q 010913 405 LFARDQWLKPGGAILP 420 (497)
Q Consensus 405 L~~~~r~LkpgG~li~ 420 (497)
+..+.++|+|||.+++
T Consensus 364 i~~a~~~LkpgG~lil 379 (423)
T PRK14966 364 AQGAPDRLAEGGFLLL 379 (423)
T ss_pred HHHHHHhcCCCcEEEE
Confidence 7777899999999874
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=113.64 Aligned_cols=109 Identities=21% Similarity=0.166 Sum_probs=84.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....++..+.+.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|++++...++ .++.+
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~--------------~~v~~ 130 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGL--------------HNVSV 130 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCC--------------CceEE
Confidence 344555566678899999999999999998888854 899999999999999999988877 46999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|..+.. .+.++||+|++.. .. ..+...+.+.|+|||.+++.
T Consensus 131 ~~~d~~~~~----~~~~~fD~I~~~~---~~------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 131 RHGDGWKGW----PAYAPFDRILVTA---AA------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred EECCcccCC----CcCCCcCEEEEcc---Cc------hhhhHHHHHhcCCCcEEEEE
Confidence 999975531 1347899999653 22 12234567899999998843
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=120.87 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCCCH----hHHHHHHcC------CCEEEEEeCCHHHHHHHHHHHHh----CCCCC---------CCCC
Q 010913 295 LMKGAVVMDIGCGTGI----LSLFAAQAG------ASRVIAVEASEKMAAVATQIAKD----NDFWW---------DRPQ 351 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~----ls~~la~~G------~~~V~gvD~S~~~i~~A~~~~~~----~gl~~---------~~~~ 351 (497)
..++.+|||+|||||. +++.+++.+ ..+|+|+|+|+.|++.|++.+.. .++.. ....
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999996 566666652 24899999999999999875311 11100 0000
Q ss_pred CCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 352 SEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 352 ~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+......+|.|.++|+.+.. .+.++||+|+|..+...+ ..+....++..+.++|+|||.|++..
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~----~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAES----PPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCC----CccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0011112347899999998863 457899999986532222 23566789999999999999998543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=109.17 Aligned_cols=117 Identities=23% Similarity=0.310 Sum_probs=90.3
Q ss_pred CCCCC-EEEEEcCCCCHhHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGA-VVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~-~VLDvGCGtG~ls~~la~~G~~-~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+.+.. +|||+|||.|.+...|++.|.. ..+|||.|+.+++.|+.++++.++. +.|+|.+.|+.+.
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-------------n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-------------NEIRFQQLDITDP 130 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-------------cceeEEEeeccCC
Confidence 33444 9999999999999999999874 5999999999999999999999983 4699999999886
Q ss_pred ccccCCCCCceeEEEeccc--ccccc---ChhhHHHHHHHHhccccCCcEEeccCceeEEe
Q 010913 373 GESMQIQPHSVDVLVSEWM--GYCLL---YESMLSSVLFARDQWLKPGGAILPDTATMFVA 428 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~--~~~l~---~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~ 428 (497)
+ +..++||+|+--.. ...|. ....+...+..+.+.|+|||++++.+|+....
T Consensus 131 ~----~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~d 187 (227)
T KOG1271|consen 131 D----FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKD 187 (227)
T ss_pred c----ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHH
Confidence 4 66788888874321 11121 12233456677899999999999888876433
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-11 Score=134.32 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+|||||.+++.+++.|+.+|++||+|+.+++.|++++..||+. ..+++++++|+.++..
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~------------~~~v~~i~~D~~~~l~- 603 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS------------GRQHRLIQADCLAWLK- 603 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------------ccceEEEEccHHHHHH-
Confidence 358899999999999999999999988999999999999999999999872 1479999999987531
Q ss_pred cCCCCCceeEEEeccccccc--------cChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCL--------LYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l--------~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
-...+||+||+++..+.- ........++..+.++|+|||.++++++
T Consensus 604 --~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 604 --EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred --HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 125689999998743221 1123456778888999999999986554
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.7e-11 Score=116.08 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=90.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.+|.+|||+|||+|..+..+++. + ...|+|+|+++.+++.++++++.+|+ .+|.++.+|+..
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~--------------~~v~~~~~D~~~ 133 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV--------------LNVAVTNFDGRV 133 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CcEEEecCCHHH
Confidence 4568899999999999999998876 2 35899999999999999999999987 479999999887
Q ss_pred cccccCCCCCceeEEEeccc----ccccc--------Chh-------hHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 372 LGESMQIQPHSVDVLVSEWM----GYCLL--------YES-------MLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~----~~~l~--------~~~-------~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
+. ...++||+|++... +..-. ... ....+|..+.++|||||+|+.++|++..
T Consensus 134 ~~----~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 134 FG----AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred hh----hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 63 33456999997542 11111 111 1245889999999999999988887643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-11 Score=119.03 Aligned_cols=93 Identities=19% Similarity=0.329 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C---CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G---ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G---~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++.+|||+|||+|.++..+++. + ...|+|+|+|+.+++.|+++. .++.++.+++.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------------------~~~~~~~~d~~~ 144 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------------------PQVTFCVASSHR 144 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------------------CCCeEEEeeccc
Confidence 35578999999999999988875 2 137999999999999887652 367899999887
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ |++.++||+|++.. . ...+.++.|+|||||.++..
T Consensus 145 l----p~~~~sfD~I~~~~---~-------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 145 L----PFADQSLDAIIRIY---A-------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred C----CCcCCceeEEEEec---C-------CCCHHHHHhhccCCCEEEEE
Confidence 6 57888999999742 1 12457789999999999853
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.6e-11 Score=124.60 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=91.2
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
.+...+|.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.++++++..|+ .+|+++.+|+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------~~v~~~~~Da 310 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--------------TIIETIEGDA 310 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--------------CeEEEEeCcc
Confidence 445578899999999999999888875 235999999999999999999999887 4799999999
Q ss_pred hhcccccCCCCCceeEEEecc----cccccc--------Chh-------hHHHHHHHHhccccCCcEEeccCceeE
Q 010913 370 EELGESMQIQPHSVDVLVSEW----MGYCLL--------YES-------MLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~----~~~~l~--------~~~-------~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
..+. +..+||+|++.. .+.... ... ....+|..+.++|||||+++.++|++.
T Consensus 311 ~~~~-----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 311 RSFS-----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cccc-----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 8762 456899999643 121110 111 123689999999999999999998874
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-11 Score=124.82 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=93.8
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
..+...+|.+|||+|||+|..+..+++. + .++|+|+|+++.+++.++++++.+|+ .+|.++.+|
T Consensus 246 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~--------------~~v~~~~~D 311 (434)
T PRK14901 246 PLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL--------------KSIKILAAD 311 (434)
T ss_pred HHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC--------------CeEEEEeCC
Confidence 3345678899999999999999999886 3 35899999999999999999999987 479999999
Q ss_pred hhhcccccCCCCCceeEEEeccc----cccccCh--------h-------hHHHHHHHHhccccCCcEEeccCceeE
Q 010913 369 VEELGESMQIQPHSVDVLVSEWM----GYCLLYE--------S-------MLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~----~~~l~~~--------~-------~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
+..+....+...++||.|++... +..-.++ . ....+|.++.++|||||+|+.++|+++
T Consensus 312 ~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 312 SRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred hhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 98763211133578999997542 2111111 1 135789999999999999998888774
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.4e-11 Score=124.26 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=92.7
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.+|.+|||+|||+|..+..++.. +..+|+|+|+++.+++.++++++..|+ .++.++.+|+
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~--------------~~v~~~~~Da 297 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL--------------SSIEIKIADA 297 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CeEEEEECch
Confidence 345678999999999999999998886 345999999999999999999999887 4689999998
Q ss_pred hhcccccCCCCCceeEEEeccc----cccccCh---------------hhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 370 EELGESMQIQPHSVDVLVSEWM----GYCLLYE---------------SMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~----~~~l~~~---------------~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
..+. .+..++||.|++... +..-.+. .....+|..+.++|||||.++.++|++.
T Consensus 298 ~~l~---~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 298 ERLT---EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhhh---hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 8763 134568999997542 2211111 1235678899999999999999999864
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=114.70 Aligned_cols=124 Identities=27% Similarity=0.303 Sum_probs=92.7
Q ss_pred chhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 278 DKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 278 d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
....++.+.+.++......++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++. ++.
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~----------- 156 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL----------- 156 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC-----------
Confidence 344566777777655555678899999999999999999883 4699999999999999999987 222
Q ss_pred CCCCceEEEecchhhcccccCCCCCceeEEEecccccccc-----------C------------hhhHHHHHHHHhcccc
Q 010913 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-----------Y------------ESMLSSVLFARDQWLK 413 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-----------~------------~~~l~~vL~~~~r~Lk 413 (497)
..++.++.+|+... ++.++||+|++++...... + ......++..+.++|+
T Consensus 157 --~~~i~~~~~d~~~~-----~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk 229 (275)
T PRK09328 157 --GARVEFLQGDWFEP-----LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK 229 (275)
T ss_pred --CCcEEEEEccccCc-----CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc
Confidence 25799999998543 3457899999975311000 0 1223567788889999
Q ss_pred CCcEEec
Q 010913 414 PGGAILP 420 (497)
Q Consensus 414 pgG~li~ 420 (497)
|||.+++
T Consensus 230 ~gG~l~~ 236 (275)
T PRK09328 230 PGGWLLL 236 (275)
T ss_pred cCCEEEE
Confidence 9999985
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=123.41 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=91.9
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
..+...+|.+|||+|||+|..+..+++.+. .+|+|+|+++.+++.++++++.+|+ +++++.+|+
T Consensus 238 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---------------~~~~~~~D~ 302 (427)
T PRK10901 238 TLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL---------------KATVIVGDA 302 (427)
T ss_pred HHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CeEEEEcCc
Confidence 344567899999999999999999998743 5999999999999999999998886 468999998
Q ss_pred hhcccccCCCCCceeEEEecccccc---c---------cChhh-------HHHHHHHHhccccCCcEEeccCceeEE
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYC---L---------LYESM-------LSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~---l---------~~~~~-------l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
.++.. .++.++||.|+++..-.. + ....+ ...+|..+.++|||||.++.++|++..
T Consensus 303 ~~~~~--~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 303 RDPAQ--WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred ccchh--hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 76531 123568999997653111 0 11111 246889999999999999988887643
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=112.10 Aligned_cols=103 Identities=23% Similarity=0.272 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||||||+|.++..+++.+. .|+|+|+|+.+++.|++++...++ ..++.+..+++..
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-------------~~~i~~~~~d~~~--- 123 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-------------AGNITFEVGDLES--- 123 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-------------ccCcEEEEcCchh---
Confidence 45778999999999999999999887 799999999999999999877665 2478999988432
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..++||+|++....+. .....+..++..+.+.+++++++.
T Consensus 124 ----~~~~fD~v~~~~~l~~-~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 ----LLGRFDTVVCLDVLIH-YPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ----ccCCcCEEEEcchhhc-CCHHHHHHHHHHHHhhcCCeEEEE
Confidence 3578999997542211 123466788888888776655544
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=117.71 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=89.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
..+.+.......++.+|||||||+|.++..++++ +..+++++|. +.+++.|++++...|+ .++|+
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-------------~~rv~ 202 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-------------ADRMR 202 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-------------cceEE
Confidence 3455666666778899999999999999999988 4458999998 6899999999988887 36899
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.+.. ++ .+|+|+.. .++++. .....+|.++.+.|+|||++++.
T Consensus 203 ~~~~d~~~~~----~~--~~D~v~~~---~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 203 GIAVDIYKES----YP--EADAVLFC---RILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEecCccCCC----CC--CCCEEEeE---hhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999987642 33 36998843 344433 34567999999999999999844
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=118.20 Aligned_cols=105 Identities=24% Similarity=0.202 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++++..+.. .....++.+..+|+..+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~---------~~~~~~~~f~~~Dl~~l--- 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAA---------LPPEVLPKFEANDLESL--- 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccc---------cccccceEEEEcchhhc---
Confidence 3678999999999999999999987 8999999999999999998654210 00013678888887653
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++||+|+|..+..++ .......++..+.+ +.+||+++
T Consensus 210 ----~~~fD~Vv~~~vL~H~-p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 210 ----SGKYDTVTCLDVLIHY-PQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred ----CCCcCEEEEcCEEEec-CHHHHHHHHHHHHh-hcCCEEEE
Confidence 4689999976532221 12234456666664 56777766
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-11 Score=122.09 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=96.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+|++||++-|-||.+|+.+|..||++|++||+|...++.|+++++.||+. ..++.++++|+.++-...
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~------------~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD------------GDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC------------ccceeeehhhHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999984 367899999998874332
Q ss_pred CCCCCceeEEEeccccccccC------hhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 377 QIQPHSVDVLVSEWMGYCLLY------ESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~------~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.-...+||+||..++.+.-.. ..+...++..+.++|+|||+++.++|+.
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 233559999999886554211 2345678888999999999999777654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=125.15 Aligned_cols=107 Identities=22% Similarity=0.296 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++++..+++ .+++.++.+|+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-------------~~~v~~~~~D~~~~--- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-------------TDRIQIIHSNWFEN--- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-------------ccceeeeecchhhh---
Confidence 4578999999999999988876 555999999999999999999988887 25799999998653
Q ss_pred cCCCCCceeEEEecccccc-----------ccCh------------hhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYC-----------LLYE------------SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~-----------l~~~------------~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.++||+|+|++.... ..++ .....++..+.++|+|||.+++.
T Consensus 202 --~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 202 --IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred --CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 34568999999762111 0111 12345677888999999999854
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-11 Score=114.51 Aligned_cols=111 Identities=18% Similarity=0.163 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...++++|||+|||+|..++.+++. +..+|+++|+++.+++.|+++++.+|+ .++|+++.|++.+
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-------------~~~i~~~~gda~~ 131 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-------------DHKINFIQSDALS 131 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEEccHHH
Confidence 3456889999999999988888775 456999999999999999999999998 3589999999977
Q ss_pred cccccC--CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 372 LGESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 372 l~~~l~--~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.-..+. .+.++||+|+... .......++..+.++|+|||+++++..
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 521110 1246899999643 224455678888999999999997654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=123.56 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=93.7
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.+...+.+.++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++.+|+ .++.++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~--------------~~v~~~ 306 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL--------------TNIETK 306 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEE
Confidence 3444445678899999999999999999986 346999999999999999999999987 469999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccc--cc-c---------Chhh-------HHHHHHHHhccccCCcEEeccCceeE
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGY--CL-L---------YESM-------LSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~--~l-~---------~~~~-------l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
.+|+..+.. ++ .++||+|++...-. .. . ...+ ...+|..+.++|||||.|+.++|++.
T Consensus 307 ~~D~~~~~~--~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 307 ALDARKVHE--KF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred eCCcccccc--hh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 999987531 12 26899999865311 11 0 1111 24578999999999999998888764
Q ss_pred E
Q 010913 427 V 427 (497)
Q Consensus 427 ~ 427 (497)
.
T Consensus 384 ~ 384 (444)
T PRK14902 384 K 384 (444)
T ss_pred h
Confidence 3
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=111.97 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=84.6
Q ss_pred hHHHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++.+.+.++.... ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++++..++
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------------- 134 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------------- 134 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------------
Confidence 4555555544332 123468999999999999999876 34589999999999999999987764
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccc------c-----Ch------------hhHHHHHHHHhccccCCc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL------L-----YE------------SMLSSVLFARDQWLKPGG 416 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l------~-----~~------------~~l~~vL~~~~r~LkpgG 416 (497)
++++++|+.+... ....++||+|++++...-. . ++ ..+..++..+.++|+|||
T Consensus 135 --~~~~~~D~~~~l~--~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG 210 (251)
T TIGR03704 135 --GTVHEGDLYDALP--TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG 210 (251)
T ss_pred --CEEEEeechhhcc--hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 3678888865310 0113579999998642110 0 10 113577888889999999
Q ss_pred EEecc
Q 010913 417 AILPD 421 (497)
Q Consensus 417 ~li~~ 421 (497)
.+++.
T Consensus 211 ~l~l~ 215 (251)
T TIGR03704 211 HLLVE 215 (251)
T ss_pred EEEEE
Confidence 99844
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=115.34 Aligned_cols=108 Identities=24% Similarity=0.221 Sum_probs=83.1
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+++...+.++.+|||||||+|.++..+++. +. ..|+|+|+++.+++.|+++++.+|+ +++.
T Consensus 69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~--------------~nV~ 134 (322)
T PRK13943 69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI--------------ENVI 134 (322)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CcEE
Confidence 334555556778899999999999999999987 32 4799999999999999999988886 5799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+|+.... ....+||+|++.. .+ ..+...+.+.|+|||.++.
T Consensus 135 ~i~gD~~~~~----~~~~~fD~Ii~~~---g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 135 FVCGDGYYGV----PEFAPYDVIFVTV---GV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred EEeCChhhcc----cccCCccEEEECC---ch------HHhHHHHHHhcCCCCEEEE
Confidence 9999987652 2346799999642 22 1123345678999999874
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=114.22 Aligned_cols=101 Identities=30% Similarity=0.442 Sum_probs=79.4
Q ss_pred EEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
+|||+|||+|.+++.+++.+. ..|+|+|+|+.+++.|++++..+|+ .++.++++|...- +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--------------~~~~~~~~dlf~~-----~ 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--------------VRVLVVQSDLFEP-----L 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--------------ccEEEEeeecccc-----c
Confidence 899999999999999999843 5999999999999999999999987 3677777765542 3
Q ss_pred CCCceeEEEecccccccc-----------C------------hhhHHHHHHHHhccccCCcEEecc
Q 010913 379 QPHSVDVLVSEWMGYCLL-----------Y------------ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l~-----------~------------~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++||+|||++. |.-. + ..-...++..+.++|+|||.+++.
T Consensus 174 -~~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 174 -RGKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred -CCceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 349999999973 2111 1 112357788889999999998843
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=114.99 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=83.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.+...|.... .++.+|||+|||||..+..++++. ..+|+|+|+|+.|++.|++++..... .-+
T Consensus 52 ~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-------------~~~ 116 (301)
T TIGR03438 52 RHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-------------QLE 116 (301)
T ss_pred HHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-------------Cce
Confidence 3444444433 467899999999999999998884 24899999999999999988765321 126
Q ss_pred eEEEecchhhcccccCCCCC----ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 362 MEVVQGMVEELGESMQIQPH----SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~----~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
|.++++|+.+.. +++.. ...++++.. ....+.......+|..+.++|+|||.+++..
T Consensus 117 v~~i~gD~~~~~---~~~~~~~~~~~~~~~~gs-~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 117 VHGICADFTQPL---ALPPEPAAGRRLGFFPGS-TIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEEEcccchh---hhhcccccCCeEEEEecc-cccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 788999987631 12222 222333221 1222345667889999999999999998543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=121.07 Aligned_cols=118 Identities=22% Similarity=0.210 Sum_probs=89.8
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
++.+.+.++......++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|++++..+++ .+
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~--------------~~ 346 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGL--------------DN 346 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------Cc
Confidence 445566666666667889999999999999999998874 999999999999999999998887 47
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++.+|+.+.....++...+||+|++++.-.. ...++..+.+ ++|+++++++
T Consensus 347 v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 347 VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEE
Confidence 999999997642112234568999998763221 2345555555 6898887744
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=93.17 Aligned_cols=102 Identities=34% Similarity=0.438 Sum_probs=81.8
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
+|+|+|||+|.++..+++.+..+++++|+++.++..+++.....+ ..++.++.+++.+.. ...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---~~~ 63 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL--------------ADNVEVLKGDAEELP---PEA 63 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc--------------ccceEEEEcChhhhc---ccc
Confidence 489999999999999988656699999999999988886443333 257899999998864 124
Q ss_pred CCceeEEEeccccccccC-hhhHHHHHHHHhccccCCcEEecc
Q 010913 380 PHSVDVLVSEWMGYCLLY-ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 380 ~~~fDvIvs~~~~~~l~~-~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+++|+|++..+ +.+ ......++..+.+.|+|||.+++.
T Consensus 64 ~~~~d~i~~~~~---~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPP---LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccc---eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 678999997663 333 667889999999999999999854
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=113.38 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=87.7
Q ss_pred HHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.|.+.++.... ..++++|||||||+|.++..+++. +..+|++||+++.+++.|++.+...+. .++
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-------------~~r 118 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-------------GER 118 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-------------CCc
Confidence 45555533222 245789999999999999999877 556999999999999999998754432 268
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccc-cccChhhHHHHHHHHhccccCCcEEecc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGY-CLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~-~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++.+|+.++- .-.+++||+|++..... .....-....++..+.+.|+|||+++++
T Consensus 119 v~v~~~Da~~~l---~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 119 FEVIEADGAEYI---AVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eEEEECCHHHHH---HhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 999999987752 22346899999764211 1110012368999999999999999854
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=120.81 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=90.6
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
+...+...+|.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++..|+ ...+.++.+
T Consensus 230 ~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-------------~~~v~~~~~ 296 (426)
T TIGR00563 230 VATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-------------TIKAETKDG 296 (426)
T ss_pred HHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEecc
Confidence 334445678999999999999999999986 545999999999999999999999887 123445667
Q ss_pred chhhcccccCCCCCceeEEEeccc--cccc-cChh----------------hHHHHHHHHhccccCCcEEeccCceeE
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWM--GYCL-LYES----------------MLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~--~~~l-~~~~----------------~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
+...... ..+.++||+|++..+ +... ...+ ....+|.++.++|||||.|+.++|++.
T Consensus 297 d~~~~~~--~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 297 DGRGPSQ--WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccc--cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 7654320 014568999997532 1111 1111 135789999999999999999998874
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=111.62 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc----CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA----GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~----G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
.++.+|||||||+|.++..+++. |. .+|+|+|+|+.|++.|+++...+ ++.+..++..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----------------~~~~~~~~~~ 121 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----------------GVTFRQAVSD 121 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----------------CCeEEEEecc
Confidence 56789999999999998888753 32 38999999999999998775433 3556666665
Q ss_pred hcccccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li 419 (497)
.+. .++++||+|+++. +++|.. .+..++.++.++++ |++++
T Consensus 122 ~l~----~~~~~fD~V~~~~---~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 122 ELV----AEGERFDVVTSNH---FLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccc----ccCCCccEEEECC---eeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 553 4578999999875 344433 35689999999998 45544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=113.37 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++++||+||||+|.++..++++ +..+|++||+++.+++.|++.+...+. .....++++++.+|+..+-
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~---------~~~~d~rv~v~~~Da~~~l- 144 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAG---------GAYDDPRVELVIGDGIKFV- 144 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcc---------ccccCCceEEEECchHHHH-
Confidence 35689999999999999999988 677999999999999999998754221 0011368999999998863
Q ss_pred ccCCCCCceeEEEeccccccccChh-hHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~-~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
....++||+|++........... ....++..+.+.|+|||+++....+
T Consensus 145 --~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 145 --AETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred --hhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 23467899999864211111111 1257788999999999999965443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=108.35 Aligned_cols=101 Identities=23% Similarity=0.308 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+.++.+|||||||||.++..+++. |. .+|+|||+++ | +.+ .+++++++|+.+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--------------~~v~~i~~D~~~~ 103 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--------------VGVDFLQGDFRDE 103 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--------------CCcEEEecCCCCh
Confidence 467889999999999999999887 33 5899999998 2 112 3589999998874
Q ss_pred cc--c--cCCCCCceeEEEeccccccccCh--h------hHHHHHHHHhccccCCcEEec
Q 010913 373 GE--S--MQIQPHSVDVLVSEWMGYCLLYE--S------MLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 373 ~~--~--l~~~~~~fDvIvs~~~~~~l~~~--~------~l~~vL~~~~r~LkpgG~li~ 420 (497)
.. . -++..++||+|+|+...+..... . ....+|..+.++|||||.+++
T Consensus 104 ~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 104 LVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 20 0 02456889999997532222111 0 124688999999999999984
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.13 E-value=6e-10 Score=104.85 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||++||+|.+++.++.+|+.+|++||.++.+++.+++++..+++ .++++++++|+...-..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-------------~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-------------GEQAEVVRNSALRALKF 114 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------cccEEEEehhHHHHHHH
Confidence 46889999999999999999999999999999999999999999999987 24789999999664211
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHH--hccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~--~r~LkpgG~li~~~~ 423 (497)
+.-....+|+|+..+. |.-. ....++..+ ..+|+++|+++..+.
T Consensus 115 ~~~~~~~~dvv~~DPP-y~~~---~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPP-FFNG---ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred hhccCCCceEEEECcC-CCCC---cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1111234888887753 2221 223333333 458999999986544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=107.48 Aligned_cols=111 Identities=25% Similarity=0.329 Sum_probs=95.1
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.|.....+.+|.+|||.|.|+|.++..+|++ | .++|+.+|+-+..++.|+++++..++. ++|++.
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-------------d~v~~~ 151 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-------------DRVTLK 151 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-------------cceEEE
Confidence 4677788999999999999999999999987 4 479999999999999999999998883 469999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.+|+.+.. ....||+|+... +++..++..+.+.|||||.+++-.++
T Consensus 152 ~~Dv~~~~-----~~~~vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 152 LGDVREGI-----DEEDVDAVFLDL--------PDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred eccccccc-----cccccCEEEEcC--------CChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 99998863 345999999543 67889999999999999999844443
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-10 Score=109.31 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~----G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+.+|||+|||+|.+++.+++. +..+|+|||+++.+++.|+++. .++.++.+|+...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------------------~~~~~~~~D~~~~ 109 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------------------PEATWINADALTT 109 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------------------cCCEEEEcchhcc
Confidence 3679999999999999998875 2348999999999999999764 3578899998765
Q ss_pred ccccCCCCCceeEEEeccccccccCh---------hhHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYE---------SMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~---------~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
. + ..+||+|||++...-+... .....++..+.++++||+.|+|...
T Consensus 110 ~----~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 110 E----F-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred c----c-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 2 2 4689999999754322111 1245678888889999998887654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-10 Score=103.23 Aligned_cols=109 Identities=18% Similarity=0.247 Sum_probs=80.4
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.+.....+.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++... ++++++++
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~----------------~~v~ii~~ 66 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA----------------DNLTVIHG 66 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC----------------CCEEEEEC
Confidence 45555666788899999999999999999985 49999999999999998886431 47999999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
|+.++. ++..+||+|+++.. |.+ ....+..++.. ..+.++|.+++.
T Consensus 67 D~~~~~----~~~~~~d~vi~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 67 DALKFD----LPKLQPYKVVGNLP-YNI-STPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred chhcCC----ccccCCCEEEECCC-ccc-HHHHHHHHHhc--CCCcceEEEEEE
Confidence 999874 45557999998853 322 12333444432 224578887744
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-10 Score=113.57 Aligned_cols=121 Identities=19% Similarity=0.189 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc--cc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL--GE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l--~~ 374 (497)
++.+|||+|||-|.-...+.+++...++|+|++...++.|+++.+...-.. ... .....-...++.+|.... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~--~~~--~~~~~f~a~f~~~D~f~~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRN--NSK--QYRFDFIAEFIAADCFSESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTST--T-H--TSEECCEEEEEESTTCCSHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccc--ccc--cccccchhheeccccccchhhh
Confidence 789999999999999999999999999999999999999999983211000 000 000011456788876432 21
Q ss_pred ccCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++....+||+|-|-. |+|++..+.....+|..+.+.|+|||+++..
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1222235999999865 7888888999999999999999999999933
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-10 Score=100.93 Aligned_cols=90 Identities=30% Similarity=0.349 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
....|++|+|+|||||++++.++-.|+.+|+|||+++.+++.|++++.+.+ .+|.++.+|+.++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---------------g~v~f~~~dv~~~- 105 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---------------GDVEFVVADVSDF- 105 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---------------CceEEEEcchhhc-
Confidence 446789999999999999999999999999999999999999999998843 5899999999886
Q ss_pred cccCCCCCceeEEEeccc-cccccChhhHHHHHH
Q 010913 374 ESMQIQPHSVDVLVSEWM-GYCLLYESMLSSVLF 406 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~-~~~l~~~~~l~~vL~ 406 (497)
...+|.++.++. |....| ++..-+..
T Consensus 106 ------~~~~dtvimNPPFG~~~rh-aDr~Fl~~ 132 (198)
T COG2263 106 ------RGKFDTVIMNPPFGSQRRH-ADRPFLLK 132 (198)
T ss_pred ------CCccceEEECCCCcccccc-CCHHHHHH
Confidence 357889998874 333333 55554433
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=106.92 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.+...++|+|+|+.+++.|++. +++++.+++.+..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------------------~~~~~~~d~~~~l-- 68 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------------------GVNVIQGDLDEGL-- 68 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------------------CCeEEEEEhhhcc--
Confidence 46789999999999999999876444899999999999877532 3578888886521
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
.++++++||+|++.. ++.+..++..++.++.|.++++.+.
T Consensus 69 ~~~~~~sfD~Vi~~~---~l~~~~d~~~~l~e~~r~~~~~ii~ 108 (194)
T TIGR02081 69 EAFPDKSFDYVILSQ---TLQATRNPEEILDEMLRVGRHAIVS 108 (194)
T ss_pred cccCCCCcCEEEEhh---HhHcCcCHHHHHHHHHHhCCeEEEE
Confidence 025678999999765 5666678888999988887765333
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=108.42 Aligned_cols=108 Identities=27% Similarity=0.342 Sum_probs=80.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....+++.+.+.+|.+|||||||+|..+..++.. |. .+|++||..+..++.|++++...++ .+|
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--------------~nv 125 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--------------DNV 125 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--------------HSE
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--------------Cce
Confidence 4445666677899999999999999999999988 54 3799999999999999999998887 589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++.+|..... ....+||.|++.. ... ..+. .+.+.||+||+|+
T Consensus 126 ~~~~gdg~~g~----~~~apfD~I~v~~---a~~--~ip~----~l~~qL~~gGrLV 169 (209)
T PF01135_consen 126 EVVVGDGSEGW----PEEAPFDRIIVTA---AVP--EIPE----ALLEQLKPGGRLV 169 (209)
T ss_dssp EEEES-GGGTT----GGG-SEEEEEESS---BBS--S--H----HHHHTEEEEEEEE
T ss_pred eEEEcchhhcc----ccCCCcCEEEEee---ccc--hHHH----HHHHhcCCCcEEE
Confidence 99999987642 2356899999654 332 2222 2456799999998
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-10 Score=112.39 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.+++.+++.|. +|+|+|+|+.+++.|+++++.+++ .+++++++|+.++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l--------------~~v~~~~~D~~~~~-- 234 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGL--------------TNVQFQALDSTQFA-- 234 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------CceEEEEcCHHHHH--
Confidence 3578999999999999999999875 999999999999999999999987 47999999998863
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
....++||+|++++.-.. ....++..+ .-++|+++++.
T Consensus 235 -~~~~~~~D~Vv~dPPr~G-----~~~~~~~~l-~~~~~~~ivyv 272 (315)
T PRK03522 235 -TAQGEVPDLVLVNPPRRG-----IGKELCDYL-SQMAPRFILYS 272 (315)
T ss_pred -HhcCCCCeEEEECCCCCC-----ccHHHHHHH-HHcCCCeEEEE
Confidence 112357999998864221 122333333 33678877763
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=114.27 Aligned_cols=145 Identities=30% Similarity=0.367 Sum_probs=121.5
Q ss_pred HHhhhcchhhhHHHHHHHHhCCCCCC-----C-CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCC
Q 010913 272 HREMISDKVRTDSYRQAILENPSLMK-----G-AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345 (497)
Q Consensus 272 h~~ml~d~~r~~~y~~~i~~~~~~~~-----~-~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl 345 (497)
...|+.|..|...|+..|.....-.+ | .-|||||.|||.+|+.++++|+..|+|++.-..|.+.|+++..+||+
T Consensus 35 y~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 35 YLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred HHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 45799999999999999877543222 2 35899999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+ ++|++|.....++. ..+....|+++.+.+.--|..+..++++=.+..++++||...+|.+++.
T Consensus 115 S-------------dkI~vInkrStev~---vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratv 178 (636)
T KOG1501|consen 115 S-------------DKINVINKRSTEVK---VGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATV 178 (636)
T ss_pred c-------------cceeeeccccceee---ecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceE
Confidence 4 79999998877775 1234568999887665566677778888888899999999999999999
Q ss_pred EEeeecC
Q 010913 426 FVAGFGR 432 (497)
Q Consensus 426 ~~~~~~~ 432 (497)
|...+..
T Consensus 179 Y~qlVES 185 (636)
T KOG1501|consen 179 YCQLVES 185 (636)
T ss_pred EEEEehh
Confidence 9988754
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-10 Score=110.80 Aligned_cols=116 Identities=24% Similarity=0.287 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+-|-||.+|+.+++.||.+|++||.|..+++.|++++..||+. .++++++.+|+.+.-..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~------------~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD------------LDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C------------CTCEEEEES-HHHHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------ccceEEEecCHHHHHHH
Confidence 468999999999999999999999999999999999999999999999973 25899999999875321
Q ss_pred cCCCCCceeEEEeccccccccC---hhhHHHHHHHHhccccCCcEEeccCce
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLY---ESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~---~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+. ..++||+||+.++.+.-.. ..+...++..+.++|+|||.|+..+|+
T Consensus 190 ~~-~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 190 LK-KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp HH-HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred Hh-cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 11 2468999999886543211 235567888899999999999866663
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-10 Score=104.16 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=86.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....+++.+.+.++.+||+||||+|..+..+|+... +|++||..+...+.|++++...|+ .+|.+
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~--------------~nV~v 124 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGY--------------ENVTV 124 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCC--------------CceEE
Confidence 344466677889999999999999999999999944 999999999999999999999998 57999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++||...-. -+..+||.|+... .. ...+..+ ...|||||+++.
T Consensus 125 ~~gDG~~G~----~~~aPyD~I~Vta---aa--~~vP~~L----l~QL~~gGrlv~ 167 (209)
T COG2518 125 RHGDGSKGW----PEEAPYDRIIVTA---AA--PEVPEAL----LDQLKPGGRLVI 167 (209)
T ss_pred EECCcccCC----CCCCCcCEEEEee---cc--CCCCHHH----HHhcccCCEEEE
Confidence 999987652 2347899999653 21 1122333 467999999983
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.7e-10 Score=109.23 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=81.5
Q ss_pred HHHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 284 ~y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+..+|+. ++.+.++.+|||+|||+|.++..+++. | ...|+|||+++.+.+...+.++..
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------------- 180 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------------- 180 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---------------
Confidence 34445533 345788999999999999999999988 4 358999999998665554443321
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+|.++.+|+.... ....+..+||+|++... .......++.++.++|||||.+++
T Consensus 181 -~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 181 -PNIVPIIEDARYPQ-KYRMLVPMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred -CCCEEEECCccChh-hhhcccCCCCEEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 36888888886421 01223458999997641 223445666789999999999985
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-10 Score=104.10 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.+|.+|||+|||.|.+...|.+. ++ .++|||+++..+..+.++ .+.++++|+++--
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v~~cv~r---------------------Gv~Viq~Dld~gL 68 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNVAACVAR---------------------GVSVIQGDLDEGL 68 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHHHHHHHc---------------------CCCEEECCHHHhH
Confidence 478999999999999999988886 55 999999999887665543 4678999997642
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccC
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKP 414 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkp 414 (497)
..+++++||.|| ++..|.....+..+|.++.|+-|.
T Consensus 69 --~~f~d~sFD~VI---lsqtLQ~~~~P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 69 --ADFPDQSFDYVI---LSQTLQAVRRPDEVLEEMLRVGRR 104 (193)
T ss_pred --hhCCCCCccEEe---hHhHHHhHhHHHHHHHHHHHhcCe
Confidence 148899999999 666888888899999988766443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-11 Score=112.43 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=86.9
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
...++......+-.++||+|||||..+..+..+ +.+.+|||+|.+|+++|.++ |+. -++.
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~Y---------------D~L~ 173 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLY---------------DTLY 173 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cch---------------HHHH
Confidence 333444444444689999999999999988777 45999999999999988765 321 2455
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
++++..+.. ...+..||+|++. .++.+...+..++..+...|+|||.+.++.-+.
T Consensus 174 ~Aea~~Fl~--~~~~er~DLi~Aa---DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 174 VAEAVLFLE--DLTQERFDLIVAA---DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHHHHHHhh--hccCCcccchhhh---hHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 666654431 1457899999954 478888999999999999999999999776544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-10 Score=104.58 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=73.2
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.+|.+|||+|||+|.++..+++. +..+|+|+|+|+.+ .. .++.++++|+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~--------------~~i~~~~~d~ 81 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI--------------ENVDFIRGDF 81 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC--------------CCceEEEeeC
Confidence 445578999999999999999988876 34589999999853 11 3577888887
Q ss_pred hhccc--c--cCCCCCceeEEEeccccc-----cccCh---hhHHHHHHHHhccccCCcEEec
Q 010913 370 EELGE--S--MQIQPHSVDVLVSEWMGY-----CLLYE---SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 ~~l~~--~--l~~~~~~fDvIvs~~~~~-----~l~~~---~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+... . ..++.++||+|++....+ .+.+. .+...++..+.++|+|||.+++
T Consensus 82 ~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 82 TDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 65310 0 013466899999854211 11111 2346889999999999999984
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-10 Score=102.77 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.-|||||||+|..+..+...|. ..+|||+|+.|++.|.+.--. -.++.+|+-+- +
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-------------------gdlil~DMG~G---l 106 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-------------------GDLILCDMGEG---L 106 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-------------------cCeeeeecCCC---C
Confidence 578999999999999999988896 999999999999999874211 24566666543 5
Q ss_pred CCCCCceeEEEeccccccccC--------hhhHHHHHHHHhccccCCcEEecc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLY--------ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~--------~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
||++++||.+||......|.+ ...+..++..++.+|++|+..++.
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 899999999998532222211 233567788899999999998744
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=116.17 Aligned_cols=117 Identities=23% Similarity=0.239 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.+.....+.++.+|||+|||+|.+++.+|+.+ .+|+|+|+++.+++.|++++..+++ .+++
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~--------------~nv~ 343 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI--------------ANVE 343 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC--------------CceE
Confidence 344445555556677899999999999999999875 4999999999999999999999987 5899
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.+....++....+||+|+..+.-.. ....++..+.+ |+|+|+++.+
T Consensus 344 ~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 344 FLAGTLETVLPKQPWAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EEeCCHHHHHHHHHhcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEEEEc
Confidence 9999998742112233467999997763221 12445555443 8899887643
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-10 Score=110.46 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=97.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.|.+.++-+.-..++..++++|||-|+-.+.+-++|++.++|+|+++..|+.|+++.+...-. .+ .+.=.+.
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r----~~----~~~f~a~ 175 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR----FK----KFIFTAV 175 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhh----hh----cccceeE
Confidence 344444444445788999999999999999999999999999999999999999987642110 00 0011467
Q ss_pred EEecchh--hcccccCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVE--ELGESMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~--~l~~~l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
|+.+|.. .+...++++..+||+|-|.. |+|++..++....+|..+.++|+|||++|-.
T Consensus 176 f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 176 FIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 8888753 33333444555699999864 7888888899999999999999999999933
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.8e-10 Score=107.77 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+.+|||+|||+|.+++.++++ +..+|+|+|+++.+++.|+++. .++.++++|+.++.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------------------~~v~~v~~D~~e~~-- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------------------PEAEWITSDVFEFE-- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------------------cCCEEEECchhhhc--
Confidence 4579999999999999988876 3459999999999999988753 36789999998762
Q ss_pred cCCCCCceeEEEeccccccccChh--h---------------HHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYES--M---------------LSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~--~---------------l~~vL~~~~r~LkpgG~li 419 (497)
...+||+|++++..+.+.... . +..++.....+|+|+|.++
T Consensus 123 ---~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 123 ---SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred ---ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 356899999987543322210 0 3456677788889998765
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=106.86 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..++++|||||+|+|..++.+|+. + .++|+++|.++..++.|+++++..|+ .++|+++.|++.+.
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-------------~~~I~li~GdA~e~ 182 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-------------SHKVNVKHGLAAES 182 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEEcCHHHH
Confidence 456799999999999999999986 3 35899999999999999999999998 35899999998775
Q ss_pred ccccC--CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l~--~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
-..+. ...++||+|+... ........+..+.++|+|||+|+.+..
T Consensus 183 L~~l~~~~~~~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHhcccCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 21110 1136899999543 235567788888999999999997654
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-10 Score=105.75 Aligned_cols=119 Identities=25% Similarity=0.264 Sum_probs=85.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCC-CCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD-RPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~-~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
....++.+||..|||.|.-...||+.|. +|+|||+|+.+++.|.+. +++... ...........++|++++||+.+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~ 108 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEE---NNLEPTVTSVGGFKRYQAGRITIYCGDFFE 108 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHH---CTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHH---hccCCCcccccceeeecCCceEEEEccccc
Confidence 3456788999999999999999999998 999999999998877432 222100 00111111234679999999999
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. +-..++||+|+=.. ..|-+++.+.......+.++|+|||.++
T Consensus 109 l~---~~~~g~fD~iyDr~-~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 109 LP---PEDVGKFDLIYDRT-FLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp GG---GSCHHSEEEEEECS-STTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred CC---hhhcCCceEEEEec-ccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 85 22335799999654 3355678899999999999999999955
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=102.21 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCC-CCCCCC--------------------
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDND-FWWDRP-------------------- 350 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~g-l~~~~~-------------------- 350 (497)
...+.++.+|||||..|.+++.+|+. |+..|+|+|+++..|+.|++.++..- ....+.
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 34577899999999999999999998 88999999999999999999876321 000001
Q ss_pred CCCCCCCCCCceEEEecchhhc-ccccCCCCCceeEEEeccc--cccc-cChhhHHHHHHHHhccccCCcEEe
Q 010913 351 QSEGNINNAGKMEVVQGMVEEL-GESMQIQPHSVDVLVSEWM--GYCL-LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 351 ~~~~~~~~~~~i~~i~gd~~~l-~~~l~~~~~~fDvIvs~~~--~~~l-~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.......++++.+...+..-. ++-+.+....||+|+|..+ -.+| .+...+..++..+.++|.|||+|+
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 0011122223333332221110 0011245678999998431 1122 234568899999999999999998
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-10 Score=104.13 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+-||||.+++.++.+||++|+.||.++..+...+++++..++. +++.++.+|+...-..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-------------~~~~v~~~d~~~~l~~ 107 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-------------DKIRVIKGDAFKFLLK 107 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-------------GGEEEEESSHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-------------cceeeeccCHHHHHHh
Confidence 578999999999999999999999999999999999999999999988873 4689999997554211
Q ss_pred cCCCCCceeEEEeccccccccChhh-HHHHHHHHh--ccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM-LSSVLFARD--QWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~-l~~vL~~~~--r~LkpgG~li~~~ 422 (497)
......+||+|+..++ |.. .. ...++..+. .+|+++|+++..+
T Consensus 108 ~~~~~~~fDiIflDPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 108 LAKKGEKFDIIFLDPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHCTS-EEEEEE--S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hcccCCCceEEEECCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 1124689999998863 221 12 355666665 8999999998554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=101.49 Aligned_cols=112 Identities=28% Similarity=0.426 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
....++++||++|||+|..++.+++. |..+|+..|.++ .+..++.+++.|+. ....++.+...+..+
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-----------~~~~~v~v~~L~Wg~ 108 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-----------LLDGRVSVRPLDWGD 108 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-------------------EEEE--TTS
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-----------cccccccCcEEEecC
Confidence 34578999999999999999999999 777999999999 99999999998861 013567777765432
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-.....+...+||+|++.- ++........++..+.++|+|+|.++
T Consensus 109 ~~~~~~~~~~~~D~IlasD---v~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 109 ELDSDLLEPHSFDVILASD---VLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp -HHHHHHS-SSBSEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred cccccccccccCCEEEEec---ccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 1000013456899999544 66677888999999999999999865
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.8e-10 Score=105.13 Aligned_cols=151 Identities=17% Similarity=0.260 Sum_probs=97.9
Q ss_pred EEEEEcCCCCHhHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 300 VVMDIGCGTGILSLFAAQAGA---SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~---~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+||+||||.|.....+.+-.. -+|++.|.|+.+++..+++...+ ..++.....|+..-....
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~---------------e~~~~afv~Dlt~~~~~~ 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD---------------ESRVEAFVWDLTSPSLKE 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc---------------hhhhcccceeccchhccC
Confidence 899999999999998888622 38999999999988777664332 134544444544333234
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEee---ecCCCCCC--Ccc-----ccccCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAG---FGRGGTSL--PFW-----ENVYGF 446 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~---~~~~~~~~--~fw-----~~v~g~ 446 (497)
+...+++|+|++......+ +......++..+.++|||||.|++.....+-.. |.++ ..+ .|+ ..+|-|
T Consensus 139 ~~~~~svD~it~IFvLSAi-~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~-~~i~~nfYVRgDGT~~YfF 216 (264)
T KOG2361|consen 139 PPEEGSVDIITLIFVLSAI-HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKG-QCISENFYVRGDGTRAYFF 216 (264)
T ss_pred CCCcCccceEEEEEEEecc-ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCC-ceeecceEEccCCceeeec
Confidence 5678999999954322222 345667899999999999999996543222111 1111 001 111 134667
Q ss_pred cccccchHHHhhhcCCCeEee
Q 010913 447 TMSCVGREVVQDAAGIPIVDV 467 (497)
Q Consensus 447 ~~~~~~~~~~~~~~~~p~v~~ 467 (497)
++..+...+..++|.....++
T Consensus 217 ~~eeL~~~f~~agf~~~~~~~ 237 (264)
T KOG2361|consen 217 TEEELDELFTKAGFEEVQLEV 237 (264)
T ss_pred cHHHHHHHHHhcccchhcccc
Confidence 888888888888876544443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=108.74 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+++||+||||+|..+..+++. +..+|++||+++.+++.|++...-..+ .......++++++.+|+.++-
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~-------~~~~~~DpRV~vvi~Da~~fL- 220 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSL-------NKSAFFDNRVNVHVCDAKEFL- 220 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchh-------ccccCCCCceEEEECcHHHHH-
Confidence 45689999999999999999988 457999999999999999962110000 000112478999999998863
Q ss_pred ccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
....++||+|++........... .-..++..+.+.|+|||+++....
T Consensus 221 --~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 --SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred --HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 23457899999874211110011 125688899999999999985543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-09 Score=106.26 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++++||+||||.|.++..++++ +..+|+.||+++.+++.|++.+...+. ....++++++.+|+..+-.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~----------~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV----------GFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc----------ccCCCceEEEEChHHHHHh
Confidence 45789999999999999999998 457999999999999999998754210 0123689999999876521
Q ss_pred ccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCcee
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
..+.++||+|++....... ... .-..++..+.+.|+|||+++....+.
T Consensus 160 --~~~~~~yDvIi~D~~dp~~-~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~ 209 (308)
T PLN02366 160 --NAPEGTYDAIIVDSSDPVG-PAQELFEKPFFESVARALRPGGVVCTQAESM 209 (308)
T ss_pred --hccCCCCCEEEEcCCCCCC-chhhhhHHHHHHHHHHhcCCCcEEEECcCCc
Confidence 1235689999986422111 111 12468889999999999998655443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=110.54 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.+++.++..|. +|+|||+++.+++.|+++++.+++ ++++++.+|+.++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~--------------~~~~~~~~d~~~~~-- 294 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGL--------------DNLSFAALDSAKFA-- 294 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEECCHHHHH--
Confidence 4568999999999999999998774 999999999999999999999987 47999999998763
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+....+||+|+.+++-. .....++..+. .++|+++++.+
T Consensus 295 -~~~~~~~D~vi~DPPr~-----G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 295 -TAQMSAPELVLVNPPRR-----GIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred -HhcCCCCCEEEECCCCC-----CCcHHHHHHHH-hcCCCeEEEEE
Confidence 11124699999887522 22234555554 37999888744
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=100.78 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCC-CCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQ-SEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~-~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..++.+||..|||.|.-+..||..|. +|+|||+|+.+++.+.+ .+++...... .........+|+++++|+.++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH---HcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 34678999999999999999999999 79999999999887654 2333210000 0011112357999999999874
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.. +-..++||+|+-.. ..+-++..+.......+.++|+|||.++.
T Consensus 117 ~~-~~~~~~fD~VyDra-~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 117 KI-ANNLPVFDIWYDRG-AYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cc-ccccCCcCeeeeeh-hHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 10 01236899988653 33455778889999999999999999873
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-09 Score=103.57 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++++||+||||+|..++.+|++ + .++|+.+|+++..++.|++.++..|+ .++|+++.|++.+.-
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-------------~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-------------DDRIEVIEGDALEVL 110 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-------------GGGEEEEES-HHHHH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-------------CCcEEEEEeccHhhH
Confidence 46789999999999999999987 3 35999999999999999999999998 369999999997753
Q ss_pred cccC--CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 374 ESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 374 ~~l~--~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
..+. .+.++||+|+... ........+..+.++|+|||+++.+..-.
T Consensus 111 ~~l~~~~~~~~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp HHHHHTTTTTSEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred HHHHhccCCCceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 2111 1245899999543 23455667777889999999999665533
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=94.85 Aligned_cols=126 Identities=25% Similarity=0.279 Sum_probs=93.8
Q ss_pred hHHHHHHHHhCCCC--CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSL--MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~~~--~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++..+..+...+.. ..|.++||+-+|+|.+++.++.+|+.+|+.||.+...+...+++++..++ .
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-------------~ 92 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-------------E 92 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-------------c
Confidence 34555666665543 78999999999999999999999999999999999999999999998886 3
Q ss_pred CceEEEecchhhcccccCCCCC--ceeEEEeccccccccChhhHHHHHHH--HhccccCCcEEeccCcee
Q 010913 360 GKMEVVQGMVEELGESMQIQPH--SVDVLVSEWMGYCLLYESMLSSVLFA--RDQWLKPGGAILPDTATM 425 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~--~fDvIvs~~~~~~l~~~~~l~~vL~~--~~r~LkpgG~li~~~~~~ 425 (497)
.+..++..|+...- +.... +||+|+..+.... ........+.. -..+|+|+|.+++....-
T Consensus 93 ~~~~~~~~da~~~L---~~~~~~~~FDlVflDPPy~~--~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 93 GEARVLRNDALRAL---KQLGTREPFDLVFLDPPYAK--GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cceEEEeecHHHHH---HhcCCCCcccEEEeCCCCcc--chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 68899999988552 12223 4999998874321 11111222333 568999999999665543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=103.39 Aligned_cols=110 Identities=24% Similarity=0.240 Sum_probs=85.9
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..|+..+.+.||.+||+.|.|+|.++..++++ +.++|+..|..+..++.|+++++..|+ .++|++
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-------------~~~v~~ 96 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-------------DDNVTV 96 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-------------CTTEEE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-------------CCCcee
Confidence 34677788999999999999999999999997 447999999999999999999999998 368999
Q ss_pred EecchhhcccccCCC---CCceeEEEeccccccccChhhHHHHHHHHhccc-cCCcEEecc
Q 010913 365 VQGMVEELGESMQIQ---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL-KPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~---~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~L-kpgG~li~~ 421 (497)
.++|+..-. +. ...+|.|+... +.+..++..+.+.| ||||.+..-
T Consensus 97 ~~~Dv~~~g----~~~~~~~~~DavfLDl--------p~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 97 HHRDVCEEG----FDEELESDFDAVFLDL--------PDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp EES-GGCG------STT-TTSEEEEEEES--------SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred Eecceeccc----ccccccCcccEEEEeC--------CCHHHHHHHHHHHHhcCCceEEEE
Confidence 999997532 32 36799999543 45566888889999 999998843
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-09 Score=121.03 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=92.2
Q ss_pred hhhhHHHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCC-CCC-CC
Q 010913 279 KVRTDSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDR-PQS-EG 354 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~-~~~-~~ 354 (497)
+..++.+.+.+...+. .+++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.|++.... ... ..
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 3445555555322221 235679999999999999999987 4469999999999999999999988652000 000 00
Q ss_pred CCCCCCceEEEecchhhcccccCCCCCceeEEEecccccccc------------Ch------------------------
Q 010913 355 NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL------------YE------------------------ 398 (497)
Q Consensus 355 ~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~------------~~------------------------ 398 (497)
+....++|+++++|+.+.. .....+||+|||++. |... ++
T Consensus 179 ~~~l~~rV~f~~sDl~~~~---~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYC---RDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred cccccccEEEEECchhhhc---cccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHH
Confidence 0011247999999987642 111236999999863 2110 11
Q ss_pred hhHHHHHHHHhccccCCcEEeccCc
Q 010913 399 SMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 399 ~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.....++....++|+|||.+++...
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEC
Confidence 0124667778899999999985543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=102.91 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+++||+||||+|.++..+++.+ ..+|+++|+++.+++.|++.+...+. .....+++++.+|+..+-
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~----------~~~~~~v~i~~~D~~~~l-- 139 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG----------SYDDPRVDLQIDDGFKFL-- 139 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc----------cccCCceEEEECchHHHH--
Confidence 45699999999999999988884 67999999999999999988754321 011257889999887652
Q ss_pred cCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCcee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
....++||+|++..... ...... ...++..+.+.|+|||+++....+.
T Consensus 140 -~~~~~~yDvIi~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 140 -ADTENTFDVIIVDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred -HhCCCCccEEEEeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 22357899999864211 111111 3578889999999999999765543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-09 Score=99.68 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=88.8
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe-cchh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ-GMVE 370 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~-gd~~ 370 (497)
...++++||+||.+.|..++.+|.. + ..+++.+|.++.+++.|++++++.|+. ++|.++. ||..
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-------------~~i~~~~~gdal 122 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-------------DRIELLLGGDAL 122 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-------------ceEEEEecCcHH
Confidence 3457899999999999999999987 4 469999999999999999999999984 5688888 5876
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.-.. ...++||+|+... .....+.++..+.++|+|||+++.+..
T Consensus 123 ~~l~~--~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 123 DVLSR--LLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHHh--ccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 65321 3468999999532 334557788889999999999996654
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-09 Score=98.85 Aligned_cols=127 Identities=24% Similarity=0.389 Sum_probs=89.3
Q ss_pred hHHHHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN 357 (497)
Q Consensus 282 ~~~y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~ 357 (497)
|+.+.+.+.. +....++..+||+|||+|.+++.++.. +..+|+|||.|+.++..|.+++..+++.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~----------- 198 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS----------- 198 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-----------
Confidence 4444444432 333456679999999999999998876 7779999999999999999999999983
Q ss_pred CCCceEEEecchhhc-ccccCCCCCceeEEEecccccccc------------Ch------------hhHHHHHHHHhccc
Q 010913 358 NAGKMEVVQGMVEEL-GESMQIQPHSVDVLVSEWMGYCLL------------YE------------SMLSSVLFARDQWL 412 (497)
Q Consensus 358 ~~~~i~~i~gd~~~l-~~~l~~~~~~fDvIvs~~~~~~l~------------~~------------~~l~~vL~~~~r~L 412 (497)
+++.+++-+++.- ....+...+++|+++|++. |... |+ ..+-.++.-+.|.|
T Consensus 199 --g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 199 --GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred --CceEEEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 6888886544321 1112355789999999963 2211 11 11234455578999
Q ss_pred cCCcEEeccC
Q 010913 413 KPGGAILPDT 422 (497)
Q Consensus 413 kpgG~li~~~ 422 (497)
+|||.+.+..
T Consensus 276 q~gg~~~le~ 285 (328)
T KOG2904|consen 276 QPGGFEQLEL 285 (328)
T ss_pred ccCCeEEEEe
Confidence 9999988543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=105.14 Aligned_cols=120 Identities=25% Similarity=0.344 Sum_probs=98.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+++.+.....+|..|||--||||.+.+.+.-.|+ +|+|.|++..|+.-|+.|++..++ ....
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i--------------~~~~ 248 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI--------------EDYP 248 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc--------------Ccee
Confidence 4667788888889999999999999999999999999 999999999999999999998886 3455
Q ss_pred EEec-chhhcccccCCCCCceeEEEeccccccccC-------hhhHHHHHHHHhccccCCcEEeccCc
Q 010913 364 VVQG-MVEELGESMQIQPHSVDVLVSEWMGYCLLY-------ESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 364 ~i~g-d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-------~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+..+ |+..+ |++..+||.|++.+ .|.... ......+|..+.++|++||++++..+
T Consensus 249 ~~~~~Da~~l----pl~~~~vdaIatDP-PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 249 VLKVLDATNL----PLRDNSVDAIATDP-PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEEecccccC----CCCCCccceEEecC-CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5555 89887 57777899999985 232211 34467888999999999999884443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=110.41 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++++||+||||+|..+..+++.+. .+|++||+++.+++.|+++..-..+. ......++++++.+|+.+.-
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~-------~~~~~dprv~vi~~Da~~~l- 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALN-------GGALDDPRVTVVNDDAFNWL- 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhh-------ccccCCCceEEEEChHHHHH-
Confidence 4578999999999999999998854 79999999999999999842111110 00112368999999998753
Q ss_pred ccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
....++||+|+++.......... .-..+++.+.+.|||||+++....+
T Consensus 368 --~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 368 --RKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred --HhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 22357899999875221100000 1245788899999999999976543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=99.17 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=87.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+.++||+||+++|..++.+|+. + ..+|+++|.++..++.|+++++..|+. ++|+++.|++.+
T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-------------~~I~~~~G~a~e 142 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-------------HKIDFREGPALP 142 (247)
T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-------------CceEEEeccHHH
Confidence 3456789999999999999999886 2 359999999999999999999999983 699999999877
Q ss_pred cccccCC---CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 372 LGESMQI---QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 372 l~~~l~~---~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.-..+.- ..++||+|+... ........+..+.+.|+|||+|+.+..-+
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred HHHHHHhccccCCcccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 5311110 136899999543 23344567777789999999999765533
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=96.10 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=80.6
Q ss_pred EEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 300 VVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
.+||||||.|.+.+.+|+. +...++|||++...+..|.+++...++ .|+.++++|+..+-..+ +
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--------------~Nv~~~~~da~~~l~~~-~ 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL--------------KNVRFLRGDARELLRRL-F 84 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT--------------SSEEEEES-CTTHHHHH-S
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc--------------cceEEEEccHHHHHhhc-c
Confidence 8999999999999999988 557999999999999999999988887 69999999987742211 4
Q ss_pred CCCceeEEEeccccccc--cCh-h--hHHHHHHHHhccccCCcEEeccCc
Q 010913 379 QPHSVDVLVSEWMGYCL--LYE-S--MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l--~~~-~--~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+++++|.|+.....-.. .|. . .-..++..+.++|+|||.|.+.|.
T Consensus 85 ~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 57899999854311100 000 0 125789999999999999975443
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-08 Score=93.27 Aligned_cols=99 Identities=27% Similarity=0.304 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..+|.+|||+.||.|.+++.+|+. +++.|+|+|++|.+++.++++++.|++ .++|.++++|..++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-------------~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-------------ENRIEVINGDAREFL 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--------------TTTEEEEES-GGG--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-------------CCeEEEEcCCHHHhc
Confidence 468999999999999999999994 445899999999999999999999998 368999999999873
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
+...+|-|++..+... ..+|.++.+++++||++
T Consensus 166 -----~~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 166 -----PEGKFDRVIMNLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp ------TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred -----CccccCEEEECChHHH-------HHHHHHHHHHhcCCcEE
Confidence 3789999995543222 24677778899999986
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-09 Score=99.80 Aligned_cols=98 Identities=21% Similarity=0.184 Sum_probs=70.1
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
.++|+|||+|..++.+|.. .++|+|+|+|+.|+++|++....... ....++...++.++. -.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~-------------~t~~~ms~~~~v~L~----g~ 97 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYC-------------HTPSTMSSDEMVDLL----GG 97 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccc-------------cCCcccccccccccc----CC
Confidence 8999999999888888888 56999999999999988876422111 012233333333332 24
Q ss_pred CCceeEEEeccccccccChhhHHHHHHHHhccccCCc-EEe
Q 010913 380 PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG-AIL 419 (497)
Q Consensus 380 ~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG-~li 419 (497)
++++|+|++.- |+++ =++..++..+.|+||+.| +++
T Consensus 98 e~SVDlI~~Aq---a~HW-Fdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 98 EESVDLITAAQ---AVHW-FDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred Ccceeeehhhh---hHHh-hchHHHHHHHHHHcCCCCCEEE
Confidence 88999999643 4433 378889999999998776 555
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.3e-09 Score=97.18 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=99.2
Q ss_pred hhhhHHHHHHHHhCC--CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENP--SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~--~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
..+++.+.+.+.+.. ...+|.+|||...|-|..++.++++||.+|+.|+.++..++.|.-+--..++.
T Consensus 114 t~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~---------- 183 (287)
T COG2521 114 TKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF---------- 183 (287)
T ss_pred ccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc----------
Confidence 344566666665543 34579999999999999999999999999999999999998877554333332
Q ss_pred CCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...|.++.||+.++-. .+++.+||+|+-.+.-+.+..+-.-..+..+++|+|||||.++
T Consensus 184 --~~~i~iilGD~~e~V~--~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 184 --EIAIKIILGDAYEVVK--DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred --ccccEEecccHHHHHh--cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 3468999999988753 4678899999988765555444445678899999999999997
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-08 Score=96.82 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=70.7
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|.....+.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++.. . ++++
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~--------------~~v~ 78 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--A--------------GNVE 78 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--C--------------CCEE
Confidence 5666677777778899999999999999999999965 899999999999999987643 1 4799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWM 391 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~ 391 (497)
++.+|+..+. + ..||+|+++..
T Consensus 79 ii~~D~~~~~----~--~~~d~Vv~NlP 100 (258)
T PRK14896 79 IIEGDALKVD----L--PEFNKVVSNLP 100 (258)
T ss_pred EEEeccccCC----c--hhceEEEEcCC
Confidence 9999998763 3 34899999854
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=9e-08 Score=101.73 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||++||.|.-|..+|.. +.+.|+|+|+++.-+..+++++.+.|+ .++.+...|...
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--------------~nv~v~~~D~~~ 175 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV--------------SNVALTHFDGRV 175 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEEeCchhh
Confidence 4578999999999999999888886 346899999999999999999999998 578888888877
Q ss_pred cccccCCCCCceeEEEec----cccccccChh---------------hHHHHHHHHhccccCCcEEeccCcee
Q 010913 372 LGESMQIQPHSVDVLVSE----WMGYCLLYES---------------MLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~----~~~~~l~~~~---------------~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+.. ..+..||.|+.. ..|.+-.++. ....+|..+.++|||||+|+-+||++
T Consensus 176 ~~~---~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 176 FGA---ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhh---hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 642 234679999953 3332221211 12578888999999999999999985
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-08 Score=101.84 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=80.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+.+|||++||+|.+++.+++. |+.+|+++|+++.+++.++++++.|++ .++.++++|+..+-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~--------------~~~~v~~~Da~~~l--- 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL--------------ENEKVFNKDANALL--- 120 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CceEEEhhhHHHHH---
Confidence 468999999999999999875 767999999999999999999999987 46789999998762
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.. ..+||+|+.++. .....++....+.++|||+++++
T Consensus 121 ~~-~~~fD~V~lDP~-------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 121 HE-ERKFDVVDIDPF-------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hh-cCCCCEEEECCC-------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 11 467999998763 22345777766778999999965
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-08 Score=97.25 Aligned_cols=87 Identities=28% Similarity=0.345 Sum_probs=72.8
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|.....+.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++...++ .++++
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-------------~~~v~ 88 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-------------ASKLE 88 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-------------CCcEE
Confidence 4556677777778899999999999999999998865 899999999999999999877653 25899
Q ss_pred EEecchhhcccccCCCCCceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
++.+|+.... + ..||+|+++.
T Consensus 89 ii~~Dal~~~----~--~~~d~VvaNl 109 (294)
T PTZ00338 89 VIEGDALKTE----F--PYFDVCVANV 109 (294)
T ss_pred EEECCHhhhc----c--cccCEEEecC
Confidence 9999998763 2 3689999874
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-08 Score=90.78 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=63.6
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHH
Q 010913 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSS 403 (497)
Q Consensus 324 ~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~ 403 (497)
+|+|+|+.|++.|+++.+..+.. ...+++++++|++++ |+++++||+|++ .+++.+..++..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-----------~~~~i~~~~~d~~~l----p~~~~~fD~v~~---~~~l~~~~d~~~ 62 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-----------CYKCIEWIEGDAIDL----PFDDCEFDAVTM---GYGLRNVVDRLR 62 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-----------CCCceEEEEechhhC----CCCCCCeeEEEe---cchhhcCCCHHH
Confidence 58999999999998776432210 014799999999987 578889999995 446777788999
Q ss_pred HHHHHhccccCCcEEec
Q 010913 404 VLFARDQWLKPGGAILP 420 (497)
Q Consensus 404 vL~~~~r~LkpgG~li~ 420 (497)
++.++.|+|||||.+++
T Consensus 63 ~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 63 AMKEMYRVLKPGSRVSI 79 (160)
T ss_pred HHHHHHHHcCcCeEEEE
Confidence 99999999999999973
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=88.24 Aligned_cols=119 Identities=26% Similarity=0.295 Sum_probs=85.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC-CE---------EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SR---------VIAVEASEKMAAVATQIAKDNDFWWDRPQSE 353 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~-~~---------V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~ 353 (497)
.....|+......++.+|||--||+|.+.+.++..+. .. ++|+|+++.++..|++++...|+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-------- 86 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-------- 86 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--------
Confidence 5666777777778899999999999999999887733 23 88999999999999999999887
Q ss_pred CCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc-cccccCh----hhHHHHHHHHhccccCCcEEe
Q 010913 354 GNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLYE----SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 354 ~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~-~~~l~~~----~~l~~vL~~~~r~LkpgG~li 419 (497)
...|.+.++|+.++. +..+++|+||+++. |.-+... .....++..+.++|++...++
T Consensus 87 -----~~~i~~~~~D~~~l~----~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 87 -----EDYIDFIQWDARELP----LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp -----CGGEEEEE--GGGGG----GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred -----CCceEEEecchhhcc----cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 357999999999984 56789999999863 2112211 223466788899999954444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=91.82 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=86.6
Q ss_pred CEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
.++||||||.|.+...+|+. +...++|||+....+..|.+.+.+.++ +|+.++++|+..+...+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--------------~Nlri~~~DA~~~l~~~- 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL--------------KNLRLLCGDAVEVLDYL- 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC--------------CcEEEEcCCHHHHHHhc-
Confidence 68999999999999999988 667999999999999999999999987 58999999998876433
Q ss_pred CCCCceeEEEeccccccccChhh--------HHHHHHHHhccccCCcEEeccCce
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESM--------LSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~--------l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
++++++|-|+... --.+... -..++..+.+.|+|||.|.+.|..
T Consensus 115 ~~~~sl~~I~i~F---PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 115 IPDGSLDKIYINF---PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCeeEEEEEC---CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 2455999998543 2111111 257889999999999999866543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-08 Score=96.30 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=67.3
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.++....+.++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++.. +++.+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----------------~~v~~ 91 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----------------DNLTI 91 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----------------CceEE
Confidence 345566666677889999999999999999999976 999999999999999876521 37999
Q ss_pred EecchhhcccccCCCCCceeEEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
+++|+.++. ++.-.++.||++.
T Consensus 92 i~~D~~~~~----~~~~~~~~vv~Nl 113 (272)
T PRK00274 92 IEGDALKVD----LSELQPLKVVANL 113 (272)
T ss_pred EEChhhcCC----HHHcCcceEEEeC
Confidence 999998864 3222258899885
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=97.58 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+.+|||++||+|.+++.+++. +.+|+|||.++.+++.|++++..+++ .+++++.+|+.++...+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~--------------~~v~~~~~d~~~~l~~~~ 271 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI--------------DNVQIIRMSAEEFTQAMN 271 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC--------------CcEEEEECCHHHHHHHHh
Confidence 357999999999999988876 55999999999999999999999987 589999999987531110
Q ss_pred C------------CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 378 I------------QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 378 ~------------~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
. ...+||+|+..+.- ......++..+.+ |+++++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~D~v~lDPPR-----~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 272 GVREFNRLKGIDLKSYNFSTIFVDPPR-----AGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred hcccccccccccccCCCCCEEEECCCC-----CCCcHHHHHHHHc---cCCEEEEE
Confidence 0 01258999988742 1223445555544 67776643
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=95.97 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCceEEEe-cchhhcc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQ-GMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~i~~i~-gd~~~l~ 373 (497)
++.+|||||||+|.+...++.. ...+++|+|+++.+++.|++++..| ++ .++|.++. .+...+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-------------~~~I~~~~~~~~~~i~ 180 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-------------NGAIRLRLQKDSKAIF 180 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-------------cCcEEEEEccchhhhh
Confidence 5689999999999776655544 3348999999999999999999999 77 35788764 3433332
Q ss_pred cccCCCCCceeEEEeccccc
Q 010913 374 ESMQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~ 393 (497)
..+..+.++||+|+|++..+
T Consensus 181 ~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 181 KGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred hcccccCCceEEEEeCCCCc
Confidence 11112456899999998644
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=96.39 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+++||.||+|.|.++..+++. +..+|++||+++.+++.|++.+..++- ....++++++.+|+..+-
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~----------~~~dprv~v~~~Da~~~L-- 170 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE----------AFCDKRLELIINDARAEL-- 170 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc----------cccCCceEEEEChhHHHH--
Confidence 5679999999999999999887 567999999999999999988754320 012478999999998863
Q ss_pred cCCCCCceeEEEeccccccccChh---hHHHHHH-HHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYES---MLSSVLF-ARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~---~l~~vL~-~~~r~LkpgG~li~~~ 422 (497)
....++||+|+.......-.... .-..++. .+.+.|+|||+++...
T Consensus 171 -~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 171 -EKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred -hhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 23467899999763110000000 1235666 7899999999998543
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=96.93 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc-C
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-Q 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l-~ 377 (497)
.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++++..+++ .++.++.+|+.++.... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~--------------~~v~~~~~d~~~~~~~~~~ 263 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI--------------DNVQIIRMSAEEFTQAMNG 263 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEEcCHHHHHHHHhh
Confidence 479999999999999888774 5999999999999999999999987 57999999998853210 0
Q ss_pred ---C---C-----CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 378 ---I---Q-----PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 378 ---~---~-----~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ . ...||+|+..+.-. .....++..+.+ |+++++++
T Consensus 264 ~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 264 VREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred ccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEE
Confidence 0 0 12489999877422 223445555544 77777743
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=81.38 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=71.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
+.++|..+....++.+|||||||+|. ++..|++.|. .|+|+|+++..++.|+++ .+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~---------------------~~~ 61 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL---------------------GLN 61 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---------------------CCe
Confidence 44556666655677899999999997 8999999898 999999999988777654 358
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
++.+|+.+.+. -.-..+|+|.|. .....+...+.++.+-+.-.
T Consensus 62 ~v~dDlf~p~~---~~y~~a~liysi------rpp~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 62 AFVDDLFNPNL---EIYKNAKLIYSI------RPPRDLQPFILELAKKINVP 104 (134)
T ss_pred EEECcCCCCCH---HHHhcCCEEEEe------CCCHHHHHHHHHHHHHcCCC
Confidence 89999877641 114679999963 23344454555555555443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=90.56 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
..++++|||+|||||.++..+++.|+.+|+|||+++.|+..
T Consensus 73 ~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 73 DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 36889999999999999999999999999999999988764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=89.08 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=79.6
Q ss_pred hhhhHHHHHHHHh-CC---CCCCCCEEEEEcCCCCH----hHHHHHHc---CC---CEEEEEeCCHHHHHHHHHHHHh--
Q 010913 279 KVRTDSYRQAILE-NP---SLMKGAVVMDIGCGTGI----LSLFAAQA---GA---SRVIAVEASEKMAAVATQIAKD-- 342 (497)
Q Consensus 279 ~~r~~~y~~~i~~-~~---~~~~~~~VLDvGCGtG~----ls~~la~~---G~---~~V~gvD~S~~~i~~A~~~~~~-- 342 (497)
+...+.+.+.++. .. ...+.-+|+..||+||- +++.+... .. -+|+|+|+|+.+++.|++-...
T Consensus 9 ~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~ 88 (196)
T PF01739_consen 9 PEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPER 88 (196)
T ss_dssp TTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGG
T ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHH
Confidence 3334455666652 22 22356799999999995 56666662 12 2899999999999999863311
Q ss_pred --CCC----------CCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhc
Q 010913 343 --NDF----------WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQ 410 (497)
Q Consensus 343 --~gl----------~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r 410 (497)
.++ ......+.+......+|+|.+.++.+. +.+.+.||+|+|-.+... +.......++..+.+
T Consensus 89 ~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~----~~~~~~fD~I~CRNVlIY-F~~~~~~~vl~~l~~ 163 (196)
T PF01739_consen 89 SLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP----DPPFGRFDLIFCRNVLIY-FDPETQQRVLRRLHR 163 (196)
T ss_dssp GGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGG-S-HHHHHHHHHHHGG
T ss_pred HHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC----CcccCCccEEEecCEEEE-eCHHHHHHHHHHHHH
Confidence 011 000012223344456789999998882 245789999999653222 345667899999999
Q ss_pred cccCCcEEeccCc
Q 010913 411 WLKPGGAILPDTA 423 (497)
Q Consensus 411 ~LkpgG~li~~~~ 423 (497)
.|+|||.|++...
T Consensus 164 ~L~pgG~L~lG~s 176 (196)
T PF01739_consen 164 SLKPGGYLFLGHS 176 (196)
T ss_dssp GEEEEEEEEE-TT
T ss_pred HcCCCCEEEEecC
Confidence 9999999995443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=88.62 Aligned_cols=105 Identities=22% Similarity=0.174 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+..++||.|||-|+.|..+...-+.+|..||+.+..++.|++.+...+ ....++++..++++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~--------------~~v~~~~~~gLQ~f~--- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN--------------PRVGEFYCVGLQDFT--- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG--------------CCEEEEEES-GGG-----
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC--------------CCcceEEecCHhhcc---
Confidence 457999999999999987655557899999999999999997754311 135688888888884
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++.+||+|++.|..-. +...++-.+|..+...|+|+|+|++
T Consensus 118 -P~~~~YDlIW~QW~lgh-LTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 118 -PEEGKYDLIWIQWCLGH-LTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ---TT-EEEEEEES-GGG-S-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCCcEeEEEehHhhcc-CCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 23579999999884222 3456788999999999999999984
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-07 Score=82.86 Aligned_cols=102 Identities=24% Similarity=0.365 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
....+|+||||+|..+-++++. |.....++|+++.+++..++-++.|+. ++..++.|+..-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---------------~~~~V~tdl~~~-- 105 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---------------HIDVVRTDLLSG-- 105 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---------------ccceeehhHHhh--
Confidence 3689999999999999999988 456899999999999988888888875 688999998775
Q ss_pred ccCCCCCceeEEEeccccccccC-----------------h--hhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLY-----------------E--SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~-----------------~--~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+++|+++-++ .|+.-. . .-.+.++..+...|.|.|.++
T Consensus 106 ---l~~~~VDvLvfNP-PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 106 ---LRNESVDVLVFNP-PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred ---hccCCccEEEECC-CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 4569999999774 333211 1 124677888888999999987
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=89.39 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=78.5
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..+.......+..+|||||+|+|.++..++++ +.-+++.+|. |.+++.+++ . ++|+++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~--------------~rv~~~ 148 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------A--------------DRVEFV 148 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------T--------------TTEEEE
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------c--------------cccccc
Confidence 44555556667789999999999999999988 5559999999 667877777 1 699999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCC--cEEec
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPG--GAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~Lkpg--G~li~ 420 (497)
.||+.+ ++|. +|+++. .++|+. ......+|+.+.+.|+|| |+|++
T Consensus 149 ~gd~f~-----~~P~--~D~~~l---~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 149 PGDFFD-----PLPV--ADVYLL---RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp ES-TTT-----CCSS--ESEEEE---ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred cccHHh-----hhcc--ccceee---ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 999983 3554 999994 445544 345678999999999999 99883
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-07 Score=88.57 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.++......++.+|||||||+|.++..+++.+. .|+|+|+++.+++.+++++... ++++
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~----------------~~v~ 78 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY----------------ERLE 78 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC----------------CcEE
Confidence 3455666666777889999999999999999999976 7999999999999988776321 5799
Q ss_pred EEecchhhcccccCCCCCcee---EEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVD---VLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fD---vIvs~~ 390 (497)
++.+|+..+. ++ ++| +|+++.
T Consensus 79 v~~~D~~~~~----~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 79 VIEGDALKVD----LP--DFPKQLKVVSNL 102 (253)
T ss_pred EEECchhcCC----hh--HcCCcceEEEcC
Confidence 9999998863 32 566 888774
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-07 Score=87.86 Aligned_cols=98 Identities=22% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
...++||||+|.|..+..++.. ..+|+++|+|+.|....+ +.|+ +++ +..++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~----~kg~-----------------~vl--~~~~w~--- 146 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLS----KKGF-----------------TVL--DIDDWQ--- 146 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHH----hCCC-----------------eEE--ehhhhh---
Confidence 5678999999999999999887 558999999998865433 3343 333 223332
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
-.+.+||+|.|.. .|-....+..+|..+++.|+|+|++++...-+
T Consensus 147 -~~~~~fDvIscLN---vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 147 -QTDFKFDVISCLN---VLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred -ccCCceEEEeehh---hhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 1346899999754 55566788999999999999999998654433
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.3e-07 Score=94.94 Aligned_cols=118 Identities=25% Similarity=0.269 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 280 ~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
...+.+...++..+...++.+|||+-||.|.+++.+|+... +|+|||+++.+++.|+++++.|++
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i-------------- 340 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGI-------------- 340 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCC--------------
Confidence 34556666667777777889999999999999999997744 999999999999999999999998
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.|++|+.++++++..... ....+|+|+..+.--.+ -..+++.+.+ ++|..+++
T Consensus 341 ~N~~f~~~~ae~~~~~~~-~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvY 393 (432)
T COG2265 341 DNVEFIAGDAEEFTPAWW-EGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVY 393 (432)
T ss_pred CcEEEEeCCHHHHhhhcc-ccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEE
Confidence 579999999999852211 23588999977643222 2345555544 55666665
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.9e-07 Score=88.05 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=87.7
Q ss_pred CEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
++||-||.|.|..+..+.+. +..+++.||+++.+++.|++.+..... ....+|++++.+|..++- .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~----------~~~dpRv~i~i~Dg~~~v---~ 144 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSG----------GADDPRVEIIIDDGVEFL---R 144 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccc----------ccCCCceEEEeccHHHHH---H
Confidence 69999999999999999999 467999999999999999998754321 011479999999998873 3
Q ss_pred CCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCceeEEe
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTATMFVA 428 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~~~~~~ 428 (497)
-...+||+|+....... ..-.. -..+++.+++.|+|+|+++..+.+.+..
T Consensus 145 ~~~~~fDvIi~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 145 DCEEKFDVIIVDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred hCCCcCCEEEEcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 33458999997642221 11111 1578899999999999999775554443
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.4e-07 Score=91.51 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+.+|||+.||+|..++.+++. |+.+|+++|+++.+++.++++++.|++ .++.++++|+..+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~--------------~~~~v~~~Da~~~l-- 108 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV--------------ENIEVPNEDAANVL-- 108 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CcEEEEchhHHHHH--
Confidence 468999999999999999987 788999999999999999999999986 46899999998873
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.....+||+|...+. ..+..++..+.+.+++||+|.+.
T Consensus 109 -~~~~~~fDvIdlDPf-------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 109 -RYRNRKFHVIDIDPF-------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -HHhCCCCCEEEeCCC-------CCcHHHHHHHHHhcccCCEEEEE
Confidence 122367999997652 12345788888899999998854
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.1e-07 Score=90.08 Aligned_cols=100 Identities=24% Similarity=0.311 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..|.+|||+-||.|.+|+.+|+.|...|+|+|++|.++..++++++.|++. +.|..++||+..+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-------------~~v~~i~gD~rev~-- 251 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-------------GRVEPILGDAREVA-- 251 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-------------ceeeEEeccHHHhh--
Confidence 569999999999999999999999877999999999999999999999983 56999999999984
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...+.+|-|+ |++.. .-..++..+.+.+++||++-
T Consensus 252 --~~~~~aDrIi---m~~p~----~a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 252 --PELGVADRII---MGLPK----SAHEFLPLALELLKDGGIIH 286 (341)
T ss_pred --hccccCCEEE---eCCCC----cchhhHHHHHHHhhcCcEEE
Confidence 2338899999 54332 33457777788899999986
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-07 Score=83.49 Aligned_cols=110 Identities=22% Similarity=0.367 Sum_probs=86.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.|..++..-+|++|||+|+|+|..++.++++|+..|++.|+.+...+..+-+++.||. .|.
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---------------~i~ 130 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---------------SIL 130 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---------------eeE
Confidence 45667888999999999999999999999999999999999999999888888888888886 678
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++..|..- .+..||+|+. +..+.....-..++. ..+.|+..|..+
T Consensus 131 ~~~~d~~g-------~~~~~Dl~La---gDlfy~~~~a~~l~~-~~~~l~~~g~~v 175 (218)
T COG3897 131 FTHADLIG-------SPPAFDLLLA---GDLFYNHTEADRLIP-WKDRLAEAGAAV 175 (218)
T ss_pred EeeccccC-------CCcceeEEEe---eceecCchHHHHHHH-HHHHHHhCCCEE
Confidence 88776532 4678999994 445444455566666 555555555543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=80.75 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=68.1
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..-..|++++|+|||.|-++..++-.+...|+|+|+.+.+++++++++....+ ++.++++++.++
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv---------------qidlLqcdildl 108 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV---------------QIDLLQCDILDL 108 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh---------------hhheeeeeccch
Confidence 34568999999999999999777766888999999999999999999988765 679999999887
Q ss_pred ccccCCCCCceeEEEecc
Q 010913 373 GESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~ 390 (497)
. +..+.||.++.++
T Consensus 109 e----~~~g~fDtaviNp 122 (185)
T KOG3420|consen 109 E----LKGGIFDTAVINP 122 (185)
T ss_pred h----ccCCeEeeEEecC
Confidence 4 5568999999776
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=76.99 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=87.3
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+........|.-||++|.|||.++..+.++|. ..+++++.|+..+....+.. +.+.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------------------p~~~ 97 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------------------PGVN 97 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------------------CCcc
Confidence 34455556667889999999999999999999975 58999999999998777764 4567
Q ss_pred EEecchhhccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 364 VVQGMVEELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 364 ~i~gd~~~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.||+.++...+ ......||.|+|.... ..+......++|..+...|.+||.++
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPl-l~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPL-LNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEecccc-ccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 8999998875222 2456789999986421 22233445678899999999999998
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-06 Score=79.74 Aligned_cols=94 Identities=31% Similarity=0.421 Sum_probs=78.8
Q ss_pred EEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 300 VVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
+|+|||+|.|.=++.+|-. +..+|+.+|.+.+-+...+..+...|+ ++++++++++++. .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L--------------~nv~v~~~R~E~~-----~ 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL--------------SNVEVINGRAEEP-----E 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---------------SSEEEEES-HHHT-----T
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC--------------CCEEEEEeeeccc-----c
Confidence 8999999999988888776 556999999999999999999999998 5899999999992 3
Q ss_pred CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 379 QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...+||+|+|-.+ ..+..++.-+..+|+|||.++
T Consensus 112 ~~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l 145 (184)
T PF02527_consen 112 YRESFDVVTARAV-------APLDKLLELARPLLKPGGRLL 145 (184)
T ss_dssp TTT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEE
T ss_pred cCCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEE
Confidence 5789999998653 345678888899999999987
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.5e-07 Score=87.44 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCCH----hHHHHHHcC------CCEEEEEeCCHHHHHHHHHHHHh-----CCCCCCC---------C-C
Q 010913 297 KGAVVMDIGCGTGI----LSLFAAQAG------ASRVIAVEASEKMAAVATQIAKD-----NDFWWDR---------P-Q 351 (497)
Q Consensus 297 ~~~~VLDvGCGtG~----ls~~la~~G------~~~V~gvD~S~~~i~~A~~~~~~-----~gl~~~~---------~-~ 351 (497)
..-+|+-+||+||- +++.+.+.+ .-+|+|+|+|..+++.|+.-+.. .++.... . .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999995 566666663 24899999999999999864422 2221100 1 1
Q ss_pred CCCCCCCCCceEEEecchhhcccccCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 352 SEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 352 ~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+.......|.|-+.++..-. ...+.||+|+|-. |.| +..+....++...+..|+|||.|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~----~~~~~fD~IfCRNVLIY--Fd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS----PFLGKFDLIFCRNVLIY--FDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc----cccCCCCEEEEcceEEe--eCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2244445567888888876642 2567899999955 444 345667889999999999999998543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.5e-07 Score=80.56 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=57.3
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
.+|+|+.||.|+.++.+|+.+. +|+|||+++..++.|+.+++-.|+ .++|.++++|..++...+..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv-------------~~~I~~i~gD~~~~~~~~~~ 66 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGV-------------ADNIDFICGDFFELLKRLKS 66 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT--------------GGGEEEEES-HHHHGGGB--
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEeCCHHHHHhhccc
Confidence 3799999999999999999955 999999999999999999999997 36999999999887532221
Q ss_pred CCCceeEEEecc
Q 010913 379 QPHSVDVLVSEW 390 (497)
Q Consensus 379 ~~~~fDvIvs~~ 390 (497)
...+|+|+.++
T Consensus 67 -~~~~D~vFlSP 77 (163)
T PF09445_consen 67 -NKIFDVVFLSP 77 (163)
T ss_dssp -----SEEEE--
T ss_pred -cccccEEEECC
Confidence 11289999875
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-07 Score=88.39 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCCH----hHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHHh----CCCCC--------C-----CCC
Q 010913 298 GAVVMDIGCGTGI----LSLFAAQA-G----ASRVIAVEASEKMAAVATQIAKD----NDFWW--------D-----RPQ 351 (497)
Q Consensus 298 ~~~VLDvGCGtG~----ls~~la~~-G----~~~V~gvD~S~~~i~~A~~~~~~----~gl~~--------~-----~~~ 351 (497)
.-+|+..||+||- +++.+... + .-+|+|+|+|+.+++.|++-... .++.. . ...
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999995 56666654 1 13799999999999999875311 01100 0 000
Q ss_pred CCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 352 SEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 352 ~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+.......|+|.+.|+.+.. ..+.+.||+|+|..+... +.......++..+.+.|+|||+|++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~---~~~~~~fD~I~cRNvliy-F~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ---WAVPGPFDAIFCRNVMIY-FDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC---CccCCCcceeeHhhHHhc-CCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 1222334467899998887642 112578999999653222 2446788999999999999999985443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-07 Score=87.44 Aligned_cols=100 Identities=23% Similarity=0.370 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
...++|||||.|.++..+...|..+++-+|.|..|++.++.. +.+++ .+....+|-+.+ +
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i---------------~~~~~v~DEE~L----d 132 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI---------------ETSYFVGDEEFL----D 132 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce---------------EEEEEecchhcc----c
Confidence 357999999999999999999999999999999999877643 33443 456677777776 4
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+..+++|+|+++. .+++..+++..+..+...|||+|.++-
T Consensus 133 f~ens~DLiisSl---slHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 133 FKENSVDLIISSL---SLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred ccccchhhhhhhh---hhhhhccCchHHHHHHHhcCCCccchh
Confidence 8999999999875 667778889999999999999999983
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-06 Score=82.58 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=100.4
Q ss_pred hccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C--CCEEEEEeCCHHHHH
Q 010913 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G--ASRVIAVEASEKMAA 334 (497)
Q Consensus 258 ~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G--~~~V~gvD~S~~~i~ 334 (497)
.+..|.++-+--+|...-.. -.+..+++|........+-+||||.||.|...+-+... + ...|.-.|.|+..++
T Consensus 99 iDr~yLnaiGWrGIR~Rk~~---l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~ 175 (311)
T PF12147_consen 99 IDRNYLNAIGWRGIRQRKVH---LEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE 175 (311)
T ss_pred HHHhhhcccchHHHHHHHHH---HHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH
Confidence 45667666655555442111 11233444443334456789999999999987766655 3 369999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccC
Q 010913 335 VATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKP 414 (497)
Q Consensus 335 ~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkp 414 (497)
..++.++..|+. +.++|.++|+.+...... -...+++++.+.+.-.+..-.++...|..+.+.+.|
T Consensus 176 ~g~~li~~~gL~-------------~i~~f~~~dAfd~~~l~~-l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~p 241 (311)
T PF12147_consen 176 KGRALIAERGLE-------------DIARFEQGDAFDRDSLAA-LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEP 241 (311)
T ss_pred HHHHHHHHcCCc-------------cceEEEecCCCCHhHhhc-cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCC
Confidence 999999999993 456999999877642212 244578877665433333335577789999999999
Q ss_pred CcEEe
Q 010913 415 GGAIL 419 (497)
Q Consensus 415 gG~li 419 (497)
||+++
T Consensus 242 gG~lI 246 (311)
T PF12147_consen 242 GGYLI 246 (311)
T ss_pred CcEEE
Confidence 99998
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=88.92 Aligned_cols=94 Identities=28% Similarity=0.413 Sum_probs=65.5
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
++.+.+.++..+...++ .|||+.||+|.+|+.+|+.+. +|+|||.++.+++.|+++++.|++ ++
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i--------------~n 245 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGI--------------DN 245 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT----------------S
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCC--------------Cc
Confidence 34455556666665555 899999999999999998854 999999999999999999999998 68
Q ss_pred eEEEecchhhccccc------------CCCCCceeEEEeccc
Q 010913 362 MEVVQGMVEELGESM------------QIQPHSVDVLVSEWM 391 (497)
Q Consensus 362 i~~i~gd~~~l~~~l------------~~~~~~fDvIvs~~~ 391 (497)
++|+.++++++...+ ......+|+|+..++
T Consensus 246 ~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 246 VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 999999887753211 012336899997764
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=84.89 Aligned_cols=106 Identities=11% Similarity=0.023 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..+++||-||.|.|..+..+.|+.. +|+.||+++.+++.+++.+.... .+...+|++++.. +.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~----------~~~~DpRv~l~~~-~~~---- 134 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFH----------EVKNNKNFTHAKQ-LLD---- 134 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHH----------HhhcCCCEEEeeh-hhh----
Confidence 4579999999999999999999965 99999999999999999654321 0122478888762 211
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
...++||+||.... ....+.+.+.+.|+|||+++....+++.
T Consensus 135 --~~~~~fDVIIvDs~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 135 --LDIKKYDLIICLQE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred --ccCCcCCEEEEcCC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 22468999997631 1256778899999999999977766553
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.5e-07 Score=83.84 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
...+|+|.-||.|+.+...|..|+ .|++||+++.-+..|+.+++-.|+ +++|+|++||+.++-.++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI-------------~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGV-------------PDRITFICGDFLDLASKL 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecC-------------CceeEEEechHHHHHHHH
Confidence 557899999999999999988888 899999999999999999999998 469999999999987666
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+....+|+|+..+ -..+++-+..-+..+..++.|.|.-+
T Consensus 160 q~~K~~~~~vf~sp---pwggp~y~~~~~~DL~~~~~p~~~~~ 199 (263)
T KOG2730|consen 160 KADKIKYDCVFLSP---PWGGPSYLRADVYDLETHLKPMGTKI 199 (263)
T ss_pred hhhhheeeeeecCC---CCCCcchhhhhhhhhhhhcchhHHHH
Confidence 66667788888543 33444555555666677777776544
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=82.99 Aligned_cols=88 Identities=28% Similarity=0.365 Sum_probs=74.2
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....+.|.....+.++..||++|.|||.++..+..+|+ +|+|+++++.|+....++.+.... ....
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~-------------~~kL 109 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPK-------------SGKL 109 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCc-------------ccee
Confidence 35677788888999999999999999999999999987 999999999999988888754433 3689
Q ss_pred EEEecchhhcccccCCCCCceeEEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
+++.||+...+ ...||++|++.
T Consensus 110 qV~~gD~lK~d------~P~fd~cVsNl 131 (315)
T KOG0820|consen 110 QVLHGDFLKTD------LPRFDGCVSNL 131 (315)
T ss_pred eEEecccccCC------CcccceeeccC
Confidence 99999997753 34699999864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.2e-06 Score=94.97 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCCC-CCCCEEEEEcCCCCHhHHHHHHcC------------------------------------------
Q 010913 283 DSYRQAILENPSL-MKGAVVMDIGCGTGILSLFAAQAG------------------------------------------ 319 (497)
Q Consensus 283 ~~y~~~i~~~~~~-~~~~~VLDvGCGtG~ls~~la~~G------------------------------------------ 319 (497)
+.+...|+..... .++..++|.+||+|.+.+.+|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4667777777666 568899999999999998887631
Q ss_pred -CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc-cccccC
Q 010913 320 -ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLY 397 (497)
Q Consensus 320 -~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~-~~~l~~ 397 (497)
..+++|+|+++.++..|++++..+|+. +.|.+.++|+.++.. +...++||+|++++. +.-+..
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~-------------~~i~~~~~D~~~~~~--~~~~~~~d~IvtNPPYg~r~~~ 319 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVA-------------ELITFEVKDVADLKN--PLPKGPTGLVISNPPYGERLGE 319 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCC-------------cceEEEeCChhhccc--ccccCCCCEEEECCCCcCccCc
Confidence 126999999999999999999999983 579999999988741 222357999999964 222222
Q ss_pred hhhHHHHHHHHhccc---cCCcEEec
Q 010913 398 ESMLSSVLFARDQWL---KPGGAILP 420 (497)
Q Consensus 398 ~~~l~~vL~~~~r~L---kpgG~li~ 420 (497)
..++..+...+...| .||+.+++
T Consensus 320 ~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 320 EPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 334444444444444 38877653
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-07 Score=95.60 Aligned_cols=118 Identities=19% Similarity=0.401 Sum_probs=75.7
Q ss_pred hHHHHHHHHhCCCC--CCC--CEEEEEcCCCCHhHHHHHHcCCCEEEEE---eCCHHHHHHHHHHHHhCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSL--MKG--AVVMDIGCGTGILSLFAAQAGASRVIAV---EASEKMAAVATQIAKDNDFWWDRPQSEG 354 (497)
Q Consensus 282 ~~~y~~~i~~~~~~--~~~--~~VLDvGCGtG~ls~~la~~G~~~V~gv---D~S~~~i~~A~~~~~~~gl~~~~~~~~~ 354 (497)
...|.+.|.+.... ..| .++||+|||+|.++..+..++. .+..+ |..+..++.|.++ |+
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gv--------- 163 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GV--------- 163 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----Cc---------
Confidence 34677677666554 222 5799999999999999999866 33332 3334455555443 33
Q ss_pred CCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccC-hhhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 355 NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-ESMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 355 ~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-~~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
-.+.+-+ ....+|++.+.||+|.|.- |+.. ...-..+|.++.|+|+|||+++.+.+..+
T Consensus 164 --------pa~~~~~--~s~rLPfp~~~fDmvHcsr---c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 164 --------PAMIGVL--GSQRLPFPSNAFDMVHCSR---CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --------chhhhhh--ccccccCCccchhhhhccc---ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 1121211 0223589999999999753 3332 22234588999999999999997766554
|
; GO: 0008168 methyltransferase activity |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=83.80 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=72.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.|.....+.++.+||+||+|.|.++..+++.+. +|+|||+++.++...++.... .++++
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~----------------~~n~~ 79 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP----------------YDNLT 79 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc----------------ccceE
Confidence 4567788888888899999999999999999999977 899999999999988887642 26899
Q ss_pred EEecchhhcccccCCCCC-ceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQPH-SVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~-~fDvIvs~~ 390 (497)
++.+|+...+ ++.- .++.||++.
T Consensus 80 vi~~DaLk~d----~~~l~~~~~vVaNl 103 (259)
T COG0030 80 VINGDALKFD----FPSLAQPYKVVANL 103 (259)
T ss_pred EEeCchhcCc----chhhcCCCEEEEcC
Confidence 9999999875 4332 688999884
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=92.77 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+..+||||||.|.+...+|+. +-..++|||++...+..|.+.+...++ .|+.++.+++..+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--------------~N~~~~~~~~~~~~~- 411 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI--------------TNFLLFPNNLDLILN- 411 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC--------------CeEEEEcCCHHHHHH-
Confidence 4689999999999999999988 556999999999999999888888887 588899998876543
Q ss_pred cCCCCCceeEEEecccccc--ccChh---hHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYC--LLYES---MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~--l~~~~---~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
-++++++|.|+.....-. -.|.. .-..++..+.++|||||.+.+.|.
T Consensus 412 -~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 412 -DLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred -hcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 267889999995432111 01111 125788999999999999985444
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=80.13 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+..++++||||.=||..++..|.+ .-++|+++|+++...+++.+..+..|+. .+|++++|++.+
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-------------~KI~~i~g~a~e 136 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-------------HKITFIEGPALE 136 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-------------ceeeeeecchhh
Confidence 3467899999999999998888877 2359999999999999999999988883 689999999755
Q ss_pred ccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 372 LGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 372 l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
.-..+ ..+.++||.++... ...+-...+.++.++||+||+|+.+....+.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred hHHHHHhcCCCCceeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 32111 13478999999432 2233346677788999999999977654444
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=85.83 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++++||-||.|.|..+..+.+.. ..+|++||+++.+++.|++.+...... ...++++++.+|+..+-.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~----------~~d~r~~i~~~Dg~~~l~- 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG----------LDDPRVRIIIGDGRKFLK- 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT----------GGSTTEEEEESTHHHHHH-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc----------cCCCceEEEEhhhHHHHH-
Confidence 67999999999999999999984 679999999999999999977543210 123699999999987632
Q ss_pred cCCCCC-ceeEEEeccccccccCh-hhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPH-SVDVLVSEWMGYCLLYE-SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~-~fDvIvs~~~~~~l~~~-~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
-... +||+|+........... -.-..++..+.+.|+|||+++..
T Consensus 145 --~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 145 --ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp --TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred --hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 2334 89999976422110000 11257889999999999999844
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.5e-07 Score=92.40 Aligned_cols=177 Identities=20% Similarity=0.269 Sum_probs=126.3
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCCC-----CC--CCEEEEEcCCCCHhHHHHHHc---C--CCEEEEEeCCHHHHHHHHH
Q 010913 271 IHREMISDKVRTDSYRQAILENPSL-----MK--GAVVMDIGCGTGILSLFAAQA---G--ASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~~-----~~--~~~VLDvGCGtG~ls~~la~~---G--~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+-+|.+.+..|.++|+..+.- .+ ..+|+-+|+|.|-+.....++ - --++++|+-+|.++-..+.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~ 413 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN 413 (649)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh
Confidence 4566678999999999998765321 11 357899999999875544433 1 1389999999998865444
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 339 ~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
..... +.++|+++.+|+..+. .|..+.|++||+.+|.+--.+ --+..|..+.++|||+|+.
T Consensus 414 -~n~~~-------------W~~~Vtii~~DMR~w~----ap~eq~DI~VSELLGSFGDNE-LSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 414 -RNFEC-------------WDNRVTIISSDMRKWN----APREQADIIVSELLGSFGDNE-LSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred -hchhh-------------hcCeeEEEeccccccC----CchhhccchHHHhhccccCcc-CCHHHHHHHHhhcCCCceE
Confidence 22222 2479999999999985 234899999999877654333 3456889999999999999
Q ss_pred eccCceeEEeeecCCCCCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccch
Q 010913 419 LPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSV 478 (497)
Q Consensus 419 i~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~ 478 (497)
||...+-++.++..+ .+|.++..... ...|..|+|....+-..++++.
T Consensus 475 IP~sYtSyi~PImS~----~l~q~v~a~~~--------~~~fe~~YVV~l~~~~~La~~q 522 (649)
T KOG0822|consen 475 IPSSYTSYIAPIMSP----KLYQEVKATND--------PNAFEAPYVVLLHNYCILAEPQ 522 (649)
T ss_pred ccchhhhhhcccccH----HHHHHHHhcCC--------ccccccceEEEecceeecCCCC
Confidence 999999988887543 24554432211 1566777888888888877773
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9e-06 Score=83.15 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCC----------------------------------------E
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS----------------------------------------R 322 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~----------------------------------------~ 322 (497)
+....+|+......++..++|-=||+|.+.+.+|-.+.. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 467778888888888899999999999999999887531 3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc-cccccChhhH
Q 010913 323 VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLYESML 401 (497)
Q Consensus 323 V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~-~~~l~~~~~l 401 (497)
++|+|+++.+++.|+.+++..|+ .+.|+|.++|+..+. -+...+|+|||++. |.-+..+...
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv-------------~d~I~f~~~d~~~l~----~~~~~~gvvI~NPPYGeRlg~~~~v 319 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGV-------------GDLIEFKQADATDLK----EPLEEYGVVISNPPYGERLGSEALV 319 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCC-------------CceEEEEEcchhhCC----CCCCcCCEEEeCCCcchhcCChhhH
Confidence 77999999999999999999998 468999999999985 22278999999963 2223333333
Q ss_pred H----HHHHHHhccccCCcEEeccCcee
Q 010913 402 S----SVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 402 ~----~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
. .+...+.+.++-.+..++.+...
T Consensus 320 ~~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 320 AKLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 3 33445567777777777665544
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-06 Score=80.98 Aligned_cols=88 Identities=24% Similarity=0.321 Sum_probs=54.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
...++.+|-|+|||.+.++..+. .+. +|...|+-+. | + .++.+|+..+
T Consensus 69 ~~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~-----------n----------------~--~Vtacdia~v- 116 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP-----------N----------------P--RVTACDIANV- 116 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------S----------------T--TEEES-TTS--
T ss_pred hcCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccCC-----------C----------------C--CEEEecCccC-
Confidence 34556899999999999985543 233 7999998541 1 2 3567888776
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
|++++++|++|.+. .|.. .+...+|.++.|+|||||.|.+
T Consensus 117 ---PL~~~svDv~VfcL---SLMG-Tn~~~fi~EA~RvLK~~G~L~I 156 (219)
T PF05148_consen 117 ---PLEDESVDVAVFCL---SLMG-TNWPDFIREANRVLKPGGILKI 156 (219)
T ss_dssp ---S--TT-EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEEE
T ss_pred ---cCCCCceeEEEEEh---hhhC-CCcHHHHHHHHheeccCcEEEE
Confidence 68999999999653 2222 3678899999999999999984
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.6e-06 Score=78.24 Aligned_cols=114 Identities=23% Similarity=0.307 Sum_probs=68.7
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHH-------hCCCCCCCCCCCCCCCCCC
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAK-------DNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~-------~~gl~~~~~~~~~~~~~~~ 360 (497)
|+....+.++.+.+|||||.|...+.+|-. ++.+++|||+.+.....|+...+ ..|.. ..
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~------------~~ 101 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR------------PG 101 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---------------
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc------------cc
Confidence 445567788999999999999988877755 88889999999998887765332 23331 35
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.+.+||+.+.+.. ...-...|+|+++. .. +.+++...|..+..-||||.+++
T Consensus 102 ~v~l~~gdfl~~~~~-~~~~s~AdvVf~Nn---~~-F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 102 KVELIHGDFLDPDFV-KDIWSDADVVFVNN---TC-FDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp EEEEECS-TTTHHHH-HHHGHC-SEEEE-----TT-T-HHHHHHHHHHHTTS-TT-EEE
T ss_pred cceeeccCccccHhH-hhhhcCCCEEEEec---cc-cCHHHHHHHHHHHhcCCCCCEEE
Confidence 789999998654210 00113579999765 33 34456666677788899998887
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.7e-06 Score=83.43 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=69.0
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.++..+.+.+|.++||.+||.|..|..+++.. ..+|+|+|.++.+++.|++++.. . +++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~--------------~ri~ 71 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F--------------GRFT 71 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C--------------CcEE
Confidence 3445556666788999999999999999999883 36999999999999999988643 2 5899
Q ss_pred EEecchhhcccccCCCCCceeEEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSE 389 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~ 389 (497)
+++++..++...++-...++|+|+..
T Consensus 72 ~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 72 LVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred EEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 99999998753222111279999975
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.2e-06 Score=76.83 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=75.3
Q ss_pred EEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc--
Q 010913 300 VVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-- 376 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l-- 376 (497)
+||+||||||..+.++|++ +.-.-.-.|..+....-.+..+...++.+ ...-+..|+.......
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N-------------v~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN-------------VRPPLALDVSAPPWPWEL 94 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc-------------cCCCeEeecCCCCCcccc
Confidence 6999999999999999988 54477788888887655666666666521 1122334443332111
Q ss_pred --CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 377 --QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 377 --~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++...+||+|+|..|.+.. ..+....++..+.++|+|||.|++
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHIS-PWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ccccCCCCcceeeehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1235689999998776543 445678899999999999999983
|
The function of this family is unknown. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.8e-06 Score=87.15 Aligned_cols=124 Identities=23% Similarity=0.239 Sum_probs=87.8
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.+.+...|-.++.+..++.+||+.||||.+++.+|+. +++|+||++++..+..|+.++..||+ .+
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi--------------sN 432 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI--------------SN 432 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc--------------cc
Confidence 4456667777888889999999999999999999875 77999999999999999999999998 68
Q ss_pred eEEEecchhhcccccCCC-CCcee-EEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 362 MEVVQGMVEELGESMQIQ-PHSVD-VLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~-~~~fD-vIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
.+|++|.++++-.++--+ -.+-+ +++..+.--.+ -..++.++.++-+|--+++ -+|+++
T Consensus 433 a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl-----h~~~ik~l~~~~~~~rlvy-vSCn~~ 493 (534)
T KOG2187|consen 433 ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL-----HMKVIKALRAYKNPRRLVY-VSCNPH 493 (534)
T ss_pred eeeeecchhhccchhcccCCCCCceEEEECCCcccc-----cHHHHHHHHhccCccceEE-EEcCHH
Confidence 999999888764322111 12344 44444422111 2346666666655654443 444443
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.7e-06 Score=78.43 Aligned_cols=108 Identities=22% Similarity=0.281 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCC--EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GAS--RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~--~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
+.||.+.||+|.|||.++-.+++. |+. .++|||.=+..++.+++++...-- +.+........++.++.||...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~----~~e~~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDIT----TSESSSKLKRGELSIVVGDGRK 155 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhcc----CchhhhhhccCceEEEeCCccc
Confidence 579999999999999999988876 442 349999999999999999865321 1111222334678999999988
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. -+..+||.|.+-. ....+..++...|+|||.++
T Consensus 156 g~----~e~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 156 GY----AEQAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cC----CccCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 74 4577999999532 11234445556788888877
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=77.25 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=88.3
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..|+..+.+.||.+||+-|.|+|.+|.+++++ +.++++..|+-+.-.+.|++-++..|+ ++++++
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-------------~~~vt~ 161 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-------------GDNVTV 161 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-------------CcceEE
Confidence 44667778899999999999999999999998 447999999999999999999999998 579999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCc-EEe
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG-AIL 419 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG-~li 419 (497)
++.|+.... .......+|+|+... +.+...+..+...||.+| ++.
T Consensus 162 ~hrDVc~~G--F~~ks~~aDaVFLDl--------PaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 162 THRDVCGSG--FLIKSLKADAVFLDL--------PAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred EEeecccCC--ccccccccceEEEcC--------CChhhhhhhhHHHhhhcCceEE
Confidence 999998765 223367899998543 344455666667888877 444
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=74.94 Aligned_cols=96 Identities=25% Similarity=0.335 Sum_probs=70.3
Q ss_pred EEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 301 VMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 301 VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
|.||||-.|.+++.|.+.|. .+|+++|+++..++.|++++...|+. ++|.++.||..+. ++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-------------~~i~~rlgdGL~~-----l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-------------DRIEVRLGDGLEV-----LK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-------------TTEEEEE-SGGGG-------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-------------ccEEEEECCcccc-----cC
Confidence 68999999999999999975 58999999999999999999999983 6899999998664 44
Q ss_pred CCc-eeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 380 PHS-VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 380 ~~~-fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++. +|+|+...||-- ....+|.+....++....++
T Consensus 63 ~~e~~d~ivIAGMGG~-----lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 63 PGEDVDTIVIAGMGGE-----LIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp GGG---EEEEEEE-HH-----HHHHHHHHTGGGGTT--EEE
T ss_pred CCCCCCEEEEecCCHH-----HHHHHHHhhHHHhccCCeEE
Confidence 554 899998877653 34567776666665554555
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-05 Score=80.11 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=89.8
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGA---SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~G~---~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
.+...+|.+|||+.++.|.=+..+|.... ..|+|+|.++.-+...++++++.|+ .++.++..|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~--------------~nv~~~~~d 216 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV--------------RNVIVVNKD 216 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC--------------CceEEEecc
Confidence 45668899999999999998888887722 3579999999999999999999998 467788877
Q ss_pred hhhcccccCCCCCceeEEEeccc--ccccc--C---------------hhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 369 VEELGESMQIQPHSVDVLVSEWM--GYCLL--Y---------------ESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~--~~~l~--~---------------~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
...+.... ....+||.|+.... +.... + ..-..++|....++|||||.|+.+||++..
T Consensus 217 ~~~~~~~~-~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 217 ARRLAELL-PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cccccccc-cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 76543211 12236999997431 11111 0 112357899999999999999999998843
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-05 Score=76.21 Aligned_cols=113 Identities=21% Similarity=0.182 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC-----------------------
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE----------------------- 353 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~----------------------- 353 (497)
.+.+||--|||.|+++..+|++|. .|.|.|.|--|+-...-.+. +.. ..++..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn--~~~-~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILN--HCS-QPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHc--ccC-CCCcEEEecceecccCCCCHHHhCCceEe
Confidence 457999999999999999999999 99999999999854333322 100 000000
Q ss_pred C------CCCCCCceEEEecchhhcccccCCC--CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 354 G------NINNAGKMEVVQGMVEELGESMQIQ--PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 354 ~------~~~~~~~i~~i~gd~~~l~~~l~~~--~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
. ......++....||+.++- +-+ .+++|+|++.. ++-...++-..|..+.++|||||+.|
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y---~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVY---GPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEec---CCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCCEEE
Confidence 1 1233567889999988873 111 36999999763 66666788899999999999999766
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.1e-06 Score=78.92 Aligned_cols=107 Identities=25% Similarity=0.334 Sum_probs=63.9
Q ss_pred HHHhCCC-CC--CCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 288 AILENPS-LM--KGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 288 ~i~~~~~-~~--~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.|..... +. ++.+|||+||++|.++..+++++ ..+|+|||+.+. ..+ ..+
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~--------------~~~ 65 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL--------------QNV 65 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---------------TTE
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc--------------cce
Confidence 3444444 33 45899999999999999999997 569999999875 010 245
Q ss_pred EEEecchhhcc------cccCCCCCceeEEEeccccccccC--------hhhHHHHHHHHhccccCCcEEe
Q 010913 363 EVVQGMVEELG------ESMQIQPHSVDVLVSEWMGYCLLY--------ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 363 ~~i~gd~~~l~------~~l~~~~~~fDvIvs~~~~~~l~~--------~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+++|+.+.. ..++-...++|+|+|.....+-.. .......+.-+.++|+|||.++
T Consensus 66 ~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 66 SFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp EBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred eeeecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 55666654321 111112368999999752221111 1222344555668899999877
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=80.85 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=75.7
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--------GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN 357 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--------G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~ 357 (497)
.+.+.......++.+|+|.+||+|.+...+.+. ....++|+|+++.++..|+-++.-.+..
T Consensus 35 ~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----------- 103 (311)
T PF02384_consen 35 VDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----------- 103 (311)
T ss_dssp HHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-----------
T ss_pred HHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-----------
Confidence 334444445677889999999999998887762 3459999999999999998877666542
Q ss_pred CCCceEEEecchhhcccccCCC-CCceeEEEeccccccc--cC---------------hh-hHHHHHHHHhccccCCcEE
Q 010913 358 NAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCL--LY---------------ES-MLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 358 ~~~~i~~i~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l--~~---------------~~-~l~~vL~~~~r~LkpgG~l 418 (497)
.....+..+|..... ... ..+||+|+++++.... .. .. .-..++..+.+.|++||++
T Consensus 104 -~~~~~i~~~d~l~~~---~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 104 -NSNINIIQGDSLEND---KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp -CBGCEEEES-TTTSH---SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred -ccccccccccccccc---ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 123468888875543 122 5789999998742222 00 00 1124778888999999986
Q ss_pred e
Q 010913 419 L 419 (497)
Q Consensus 419 i 419 (497)
.
T Consensus 180 ~ 180 (311)
T PF02384_consen 180 A 180 (311)
T ss_dssp E
T ss_pred e
Confidence 5
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.6e-06 Score=78.96 Aligned_cols=85 Identities=24% Similarity=0.362 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
....+|-|+|||.+.++. +.. ..|+..|+-+ -+-.++.+|+.++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a-----------------------------~~~~V~~cDm~~v--- 222 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SER-HKVHSFDLVA-----------------------------VNERVIACDMRNV--- 222 (325)
T ss_pred cCceEEEecccchhhhhh---ccc-cceeeeeeec-----------------------------CCCceeeccccCC---
Confidence 556899999999998765 222 3799999743 1335677888886
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
|++++++||+|.+. .|.. .++..++.++.|+|+|||.+++.
T Consensus 223 -Pl~d~svDvaV~CL---SLMg-tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 223 -PLEDESVDVAVFCL---SLMG-TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred -cCccCcccEEEeeH---hhhc-ccHHHHHHHHHHHhccCceEEEE
Confidence 68999999998643 1211 46788999999999999999843
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=75.45 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=77.1
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~ 364 (497)
..++....-..+|+++||+|+.||.++..+.+.||++|+|||..-..+..--+. . .+| .+
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d----------------~rV~~~ 128 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D----------------PRVIVL 128 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C----------------CcEEEE
Confidence 334444444468999999999999999999999999999999998766532222 1 344 45
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...++..+.... + .+..|+|++... + -.+..+|..+..+|+|+|.++
T Consensus 129 E~tN~r~l~~~~-~-~~~~d~~v~DvS-F-----ISL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 129 ERTNVRYLTPED-F-TEKPDLIVIDVS-F-----ISLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred ecCChhhCCHHH-c-ccCCCeEEEEee-h-----hhHHHHHHHHHHhcCCCceEE
Confidence 556777664211 2 237899997641 1 246789999999999999987
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.1e-05 Score=73.83 Aligned_cols=96 Identities=31% Similarity=0.404 Sum_probs=79.0
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+.+|+|||+|.|.=++.+|=. +..+|+-+|...+-+...+......++ ++++++++.++++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L--------------~nv~i~~~RaE~~~--- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL--------------ENVEIVHGRAEEFG--- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC--------------CCeEEehhhHhhcc---
Confidence 689999999999988887743 445799999999999999999999998 68999999999985
Q ss_pred CCCCCc-eeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 377 QIQPHS-VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 377 ~~~~~~-fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+... ||+|+|-.+ +.+..++.-+..+||+||.++
T Consensus 131 --~~~~~~D~vtsRAv-------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 131 --QEKKQYDVVTSRAV-------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred --cccccCcEEEeehc-------cchHHHHHHHHHhcccCCcch
Confidence 2223 999998653 345667777889999988865
|
|
| >KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.5e-06 Score=82.15 Aligned_cols=83 Identities=16% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCCcceecCCCCCC-CHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYS-SCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 44 ~~~~~CLFC~~~~~-s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
.-..+||||...+- +-.+.|.||...|+|++...-+..- .=.|+.-|..+....+|++|.+.|+++..|+.||+
T Consensus 142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVy-----vnelLehLkekL~r~~CLyCekifrdkntLkeHMr 216 (423)
T KOG2482|consen 142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVY-----VNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMR 216 (423)
T ss_pred eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceee-----HHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHH
Confidence 56789999987765 8899999999999998876322111 22355667777777889999999999999999999
Q ss_pred HhccCcccC
Q 010913 123 EAYNLKETK 131 (497)
Q Consensus 123 ~~~~~~~~~ 131 (497)
+|.|-+..+
T Consensus 217 kK~HrrinP 225 (423)
T KOG2482|consen 217 KKRHRRINP 225 (423)
T ss_pred hccCcccCC
Confidence 999988643
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.9e-05 Score=70.78 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=79.6
Q ss_pred HHHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 284 ~y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+..+|+. +..+.+|.+||-+|+++|...-.++.- | .+.|+||+.|+.........+++.
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------------- 121 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------------- 121 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---------------
Confidence 34555543 356789999999999999988888776 5 568999999997766555554443
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.||-.+.+|+........+ .+.+|+|++.. ....+..-++..+..+||+||.+++.
T Consensus 122 -~NIiPIl~DAr~P~~Y~~l-v~~VDvI~~DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 122 -PNIIPILEDARHPEKYRML-VEMVDVIFQDV-----AQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -TTEEEEES-TTSGGGGTTT-S--EEEEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CceeeeeccCCChHHhhcc-cccccEEEecC-----CChHHHHHHHHHHHhhccCCcEEEEE
Confidence 5888888998776544333 45999999764 23445666778888999999998843
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=82.75 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..+++..++|+|||.|..+...+..+...++|++.++..+..+.......++. ..-.++.+++..-
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-------------~k~~~~~~~~~~~- 172 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-------------NKCNFVVADFGKM- 172 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-------------hhcceehhhhhcC-
Confidence 45677899999999999999999886669999999999988888877766663 2334466777665
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
|+++..||.+.+. ...-|.+.+..++.+++|+++|||.++
T Consensus 173 ---~fedn~fd~v~~l---d~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 173 ---PFEDNTFDGVRFL---EVVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred ---CCCccccCcEEEE---eecccCCcHHHHHHHHhcccCCCceEE
Confidence 5889999999953 366777899999999999999999998
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.5e-06 Score=73.63 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=85.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
...-.++..+....|.+||++|.| ||..++.+|.. ..+.|.-.|-++..+.-.++....|.... -.+
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~-----------~ts 84 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS-----------LTS 84 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc-----------cce
Confidence 445557777777889999999999 57777777766 66799999999999988888776663311 122
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.-....-. ......+||+|++.- |+++.+--.++.+.+.++|+|.|..++
T Consensus 85 c~vlrw~~~~aq--sq~eq~tFDiIlaAD---ClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 85 CCVLRWLIWGAQ--SQQEQHTFDIILAAD---CLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ehhhHHHHhhhH--HHHhhCcccEEEecc---chhHHHHHHHHHHHHHHHhCcccceeE
Confidence 222222221111 123456899999654 887777888899999999999999663
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.7e-05 Score=76.25 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=88.7
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||+.+|.|.=+..++.. + .+.|+|+|+++.-+...++++++.|+ .++.++..|...
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--------------~~v~~~~~D~~~ 147 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--------------FNVIVINADARK 147 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---------------SSEEEEESHHHH
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--------------ceEEEEeecccc
Confidence 4578899999999999998888877 3 56999999999999999999999997 578888888877
Q ss_pred cccccCCCCCceeEEEecc----ccccccC---------------hhhHHHHHHHHhccc----cCCcEEeccCceeE
Q 010913 372 LGESMQIQPHSVDVLVSEW----MGYCLLY---------------ESMLSSVLFARDQWL----KPGGAILPDTATMF 426 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~----~~~~l~~---------------~~~l~~vL~~~~r~L----kpgG~li~~~~~~~ 426 (497)
... ......||.|+... .|..-.+ ......+|..+.++| ||||+++.++|++.
T Consensus 148 ~~~--~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 148 LDP--KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHH--HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccc--cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 631 12244699999743 2211111 111257888899999 99999999999873
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.4e-05 Score=76.43 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....+.|.....+.++..|||||+|+|.+|..+++.+ .+|++||+++.+++..++.+.. .+++
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~----------------~~~~ 78 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS----------------NPNV 78 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT----------------CSSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh----------------cccc
Confidence 3556666666677789999999999999999999998 5999999999999888876542 2689
Q ss_pred EEEecchhhcccccCCCCCceeEEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
+++.+|+..++....+ ......|+++.
T Consensus 79 ~vi~~D~l~~~~~~~~-~~~~~~vv~Nl 105 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLL-KNQPLLVVGNL 105 (262)
T ss_dssp EEEES-TTTSCGGGHC-SSSEEEEEEEE
T ss_pred eeeecchhccccHHhh-cCCceEEEEEe
Confidence 9999999988621101 24566777763
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=4e-05 Score=77.40 Aligned_cols=88 Identities=26% Similarity=0.334 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.+|.++|||||++|.++..+++.|+ +|+|||..+ | +.. +.. .++|+.+.++...+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l---~~~-L~~----------------~~~V~h~~~d~fr~~- 265 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-M---AQS-LMD----------------TGQVEHLRADGFKFR- 265 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-c---CHh-hhC----------------CCCEEEEeccCcccC-
Confidence 46899999999999999999999999 999999665 2 222 222 257899998877663
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
| +.+.+|+++|... ..+..+..-+.++|..|
T Consensus 266 --p-~~~~vDwvVcDmv-------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 266 --P-PRKNVDWLVCDMV-------EKPARVAELMAQWLVNG 296 (357)
T ss_pred --C-CCCCCCEEEEecc-------cCHHHHHHHHHHHHhcC
Confidence 2 2678999998752 24556777778888776
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=70.78 Aligned_cols=97 Identities=15% Similarity=0.000 Sum_probs=70.7
Q ss_pred HHHhCCCCCCCC--EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMKGA--VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~~~--~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.|.+..++.+|. +|||+-+|+|..++.++.+|+ +|++||.++.+....++.++...... .....-..+++++
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~-----~~~~~~~~ri~l~ 150 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADA-----EIGGWLQERLQLI 150 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhcc-----ccchhhhceEEEE
Confidence 344445666776 999999999999999999999 59999999999998888887631100 0000001479999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccc
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~ 393 (497)
++|..++-. -...+||+|+..+|.-
T Consensus 151 ~~da~~~L~---~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 151 HASSLTALT---DITPRPQVVYLDPMFP 175 (250)
T ss_pred eCcHHHHHh---hCCCCCcEEEECCCCC
Confidence 999988742 2234799999988643
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.5e-05 Score=67.34 Aligned_cols=58 Identities=31% Similarity=0.444 Sum_probs=49.8
Q ss_pred EEEEEcCCCCHhHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 300 VVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~-~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
+|||+|||+|.+++.+++.+.. +|+++|+++.+.+.++++++.|++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~--------------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL--------------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC--------------CcEEEEEeeeeC
Confidence 4899999999999999998653 899999999999999999998886 357777766544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=62.02 Aligned_cols=103 Identities=29% Similarity=0.395 Sum_probs=68.2
Q ss_pred EEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 301 VMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 301 VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
++|+|||+|..+ .++.... ..++|+|+++.++..++......+. ..+.++.++..... +++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~ 114 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL--------------GLVDFVVADALGGV--LPF 114 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC--------------CceEEEEeccccCC--CCC
Confidence 999999999977 4444422 3899999999999875544322111 11677777776510 245
Q ss_pred CC-CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 379 QP-HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 379 ~~-~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.. ..||++.+.. .+.+.. +..++..+.+.|+|+|.++.....
T Consensus 115 ~~~~~~d~~~~~~---~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 115 EDSASFDLVISLL---VLHLLP-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CCCCceeEEeeee---ehhcCC-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 55 4899994322 211222 778999999999999998855443
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.2e-05 Score=80.45 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=99.5
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCC-----------------C-------------C---CCCEEEEEcCCCCHhHHHHHH
Q 010913 271 IHREMISDKVRTDSYRQAILENPS-----------------L-------------M---KGAVVMDIGCGTGILSLFAAQ 317 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~-----------------~-------------~---~~~~VLDvGCGtG~ls~~la~ 317 (497)
..+.+-+|.+.++.|.++|...+. . . ...+|+-+|+|-|-+.-.+.+
T Consensus 641 TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLr 720 (1072)
T PTZ00357 641 VYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLH 720 (1072)
T ss_pred hHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHH
Confidence 466677899999999998865431 0 0 113689999999987444333
Q ss_pred c----CC-CEEEEEeCCHHHHHHHHHHHHh-CCCCCCCCCCCCCCCCCCceEEEecchhhcccc-------cCCCCCcee
Q 010913 318 A----GA-SRVIAVEASEKMAAVATQIAKD-NDFWWDRPQSEGNINNAGKMEVVQGMVEELGES-------MQIQPHSVD 384 (497)
Q Consensus 318 ~----G~-~~V~gvD~S~~~i~~A~~~~~~-~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~-------l~~~~~~fD 384 (497)
+ |. -+|++||-++..+.....+... ....+ .+...+++|++|.+|+..+... +|..-+++|
T Consensus 721 Aak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n------~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaD 794 (1072)
T PTZ00357 721 AVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQ------LAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCD 794 (1072)
T ss_pred HHHHcCCcEEEEEEecCcchHHHHHHHHhccccccc------ccccCCCeEEEEeCcccccccccccccccccccccccc
Confidence 3 43 3899999996654444444322 12100 0111245799999999998521 011124899
Q ss_pred EEEeccccccccChhhHHHHHHHHhccccC----Cc-------EEeccCceeEEeeecCC
Q 010913 385 VLVSEWMGYCLLYESMLSSVLFARDQWLKP----GG-------AILPDTATMFVAGFGRG 433 (497)
Q Consensus 385 vIvs~~~~~~l~~~~~l~~vL~~~~r~Lkp----gG-------~li~~~~~~~~~~~~~~ 433 (497)
+|||+.+|.+--.+ --+..|..+.+.||+ +| +.||...+-++.++..+
T Consensus 795 IVVSELLGSFGDNE-LSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSp 853 (1072)
T PTZ00357 795 LIVSELLGSLGDNE-LSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSA 853 (1072)
T ss_pred eehHhhhccccccc-CCHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccH
Confidence 99999877654333 334577777788775 55 47888888888877644
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.7e-05 Score=74.63 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC-------CCCCCCCC-------C
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRP-------QSEGNINN-------A 359 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~-------~~~~~~~~-------~ 359 (497)
...+|.++||||||+-+.....|..-+..|+..|.++.-.+..++-++..+-.+-.+ .++....+ .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 345788999999999888766665557799999999999887777664432100000 00100000 1
Q ss_pred Cce-EEEecchhhcccccCCCC-----CceeEEEecccccccc----ChhhHHHHHHHHhccccCCcEEec
Q 010913 360 GKM-EVVQGMVEELGESMQIQP-----HSVDVLVSEWMGYCLL----YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 360 ~~i-~~i~gd~~~l~~~l~~~~-----~~fDvIvs~~~~~~l~----~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..| .++.+|+.... |+.+ .+||+|+|.. ||. .......+++.+.++|||||.|+.
T Consensus 133 ~~Vk~Vv~cDV~~~~---pl~~~~~~p~~~D~v~s~f---cLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPN---PLDPPVVLPPKFDCVISSF---CLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHEEEEEE--TTSSS---TTTTS-SS-SSEEEEEEES---SHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhhceEEEeeccCCC---CCCccccCccchhhhhhhH---HHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 224 47888987765 3333 3599999654 443 345667888999999999999983
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00016 Score=72.75 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.-.+||-+|.|.|.....+.|.+ ..+|+-||.+|+|++.++.+.--..+ +.++....+++++..|+.++-
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~-------N~~sf~dpRv~Vv~dDAf~wl-- 359 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL-------NQGSFSDPRVTVVNDDAFQWL-- 359 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh-------ccCCccCCeeEEEeccHHHHH--
Confidence 34789999999999999999994 78999999999999999843211111 123334579999999998884
Q ss_pred cCCCCCceeEEEeccccccccChhhH--HHHHHHHhccccCCcEEeccCcee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l--~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.-....||+||.......-.....+ ..+..-+.+.|+++|+++.+..+.
T Consensus 360 -r~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 360 -RTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred -HhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 3456699999964321111111111 345566789999999999665544
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=67.20 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+||.||-|-|+..-++.++...+-+.|+..+..++..+.. |... ..+|.++.|.-++....
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~----gw~e-----------k~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDW----GWRE-----------KENVIILEGRWEDVLNT 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhc----cccc-----------ccceEEEecchHhhhcc
Confidence 68999999999999999999998776888899999988755543 4321 36889999988887543
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++++.||.|+-.. .-.+-+++..+...+.|+|||+|.+-
T Consensus 165 --L~d~~FDGI~yDT---y~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 165 --LPDKHFDGIYYDT---YSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred --ccccCcceeEeec---hhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 5678899999543 32344677778889999999999975
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00051 Score=69.76 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+...|.... .++.+|+|+|||+|.-+..+.++ + ....++||+|..+++.+.+.+....+.
T Consensus 65 ~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p------------ 130 (319)
T TIGR03439 65 KHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS------------ 130 (319)
T ss_pred HHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC------------
Confidence 3444554433 56779999999999854443332 2 247999999999999999888633321
Q ss_pred CCceEEEecchhhcccccCC--CCCceeEEEecccccccc--ChhhHHHHHHHHhc-cccCCcEEec
Q 010913 359 AGKMEVVQGMVEELGESMQI--QPHSVDVLVSEWMGYCLL--YESMLSSVLFARDQ-WLKPGGAILP 420 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~--~~~~fDvIvs~~~~~~l~--~~~~l~~vL~~~~r-~LkpgG~li~ 420 (497)
.=.+.-+.|+..+.-.-++- ......+|+. +|..+. .......+|..+.+ .|+|||.|++
T Consensus 131 ~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 131 HVRCAGLLGTYDDGLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CeEEEEEEecHHHHHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 01344488888664211111 1234566664 333333 34556789999999 9999999985
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.7e-05 Score=65.82 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=44.5
Q ss_pred EEEcCCCCHhHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 302 MDIGCGTGILSLFAAQA----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 302 LDvGCGtG~ls~~la~~----G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
|+||+..|..+..+++. +..+++++|..+. .+.+++.++..++ .++++++.++..+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-------------~~~~~~~~g~s~~~l~~-- 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-------------SDRVEFIQGDSPDFLPS-- 64 (106)
T ss_dssp --------------------------EEEESS-------------GGG--------------BTEEEEES-THHHHHH--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-------------CCeEEEEEcCcHHHHHH--
Confidence 68999999988887765 2237999999995 3334444444444 35799999998766322
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++..++|+|+.... +..+.....+..+.+.|+|||+++++
T Consensus 65 ~~~~~~dli~iDg~----H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 65 LPDGPIDLIFIDGD----HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHH--EEEEEEES-------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCCCEEEEEECCC----CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22578999996531 12245566788889999999999854
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00025 Score=63.44 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=59.8
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQ-----AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~-----~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
...+..+|+|+|||.|.+++.++. ....+|+|||.++..++.|.++.+..+.. ...++.++.++
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ 90 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD-----------LEKRLSFIQGD 90 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch-----------hhccchhhccc
Confidence 346778999999999999999999 53349999999999999999988776521 12467777777
Q ss_pred hhhcccccCCCCCceeEEEe
Q 010913 369 VEELGESMQIQPHSVDVLVS 388 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs 388 (497)
+.... .....+++++
T Consensus 91 ~~~~~-----~~~~~~~~vg 105 (141)
T PF13679_consen 91 IADES-----SSDPPDILVG 105 (141)
T ss_pred hhhhc-----ccCCCeEEEE
Confidence 66542 2556777774
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00043 Score=69.23 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCC-HhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCceEEEecchh-hcc
Q 010913 298 GAVVMDIGCGTG-ILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQGMVE-ELG 373 (497)
Q Consensus 298 ~~~VLDvGCGtG-~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~i~~i~gd~~-~l~ 373 (497)
..++||||+|.. +..+..++. |. +++|+|+++..++.|++++..| +| .++|+++...-. .+-
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L-------------~~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNL-------------ESRIELRKQKNPDNIF 168 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T--------------TTTEEEEE--ST-SST
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhcccc-------------ccceEEEEcCCccccc
Confidence 578999999986 556666665 77 9999999999999999999999 88 468988765322 111
Q ss_pred cccCCCCCceeEEEecccccc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYC 394 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~ 394 (497)
..+..+.+.||+.+|++.+|.
T Consensus 169 ~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp TTSTT--S-EEEEEE-----S
T ss_pred hhhhcccceeeEEecCCcccc
Confidence 112233568999999986654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00042 Score=69.11 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDN 343 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~ 343 (497)
....|......+.+.+|||+|||+|..+..+... ....+++||.|+.|++.++..+...
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 3344444445578899999999999876665554 3568999999999999999887543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=77.70 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG---------ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G---------~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.+.+|||.|||+|.+...+++.. ...++|+|+++.++..|+.++...+. ..+.+..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--------------~~~~i~~~ 96 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--------------LEINVINF 96 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--------------CCceeeec
Confidence 45699999999999988877642 14789999999999999988765541 12344444
Q ss_pred chhhccccc-CCCCCceeEEEeccc
Q 010913 368 MVEELGESM-QIQPHSVDVLVSEWM 391 (497)
Q Consensus 368 d~~~l~~~l-~~~~~~fDvIvs~~~ 391 (497)
+........ .-..++||+||++++
T Consensus 97 d~l~~~~~~~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 97 NSLSYVLLNIESYLDLFDIVITNPP 121 (524)
T ss_pred ccccccccccccccCcccEEEeCCC
Confidence 433211000 012357999999974
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=3e-05 Score=75.89 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..|..++|+|||.|-.... .+...++|.|.+...+..|++. +......+|+..+
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~--------------------~~~~~~~ad~l~~--- 97 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS--------------------GGDNVCRADALKL--- 97 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC--------------------CCceeehhhhhcC---
Confidence 3489999999999965421 1233799999999888766643 1226777888886
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
|+...+||.+++..+.+.|........+++++.|.|+|||..+
T Consensus 98 -p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 98 -PFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred -CCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 5889999999987766667667777899999999999999966
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=67.27 Aligned_cols=107 Identities=25% Similarity=0.279 Sum_probs=70.2
Q ss_pred HHHhCCCC-CCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 288 AILENPSL-MKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 288 ~i~~~~~~-~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.|.....+ .++.+|+|+|+.+|..+..+++. |. .+|+|||+.|.-. -.+|.+
T Consensus 35 el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-------------------------~~~V~~ 89 (205)
T COG0293 35 ELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-------------------------IPGVIF 89 (205)
T ss_pred HHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-------------------------CCCceE
Confidence 34333343 46799999999999999999988 44 3599999987311 135899
Q ss_pred Eecchhhcccc----cCCCCCceeEEEeccccccc-----cC---hhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEELGES----MQIQPHSVDVLVSEWMGYCL-----LY---ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~----l~~~~~~fDvIvs~~~~~~l-----~~---~~~l~~vL~~~~r~LkpgG~li 419 (497)
+++|+..-+.. ..+....+|+|+|......- .| ..-...++.-+..+|+|||.++
T Consensus 90 iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 90 LQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred EeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 99998654310 11335568999987532110 11 1112344555678999999987
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00058 Score=67.67 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCCHh-HHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHH-hCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 297 KGAVVMDIGCGTGIL-SLFAAQA-GA-SRVIAVEASEKMAAVATQIAK-DNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 297 ~~~~VLDvGCGtG~l-s~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~-~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+.+|+=||||.=-+ ++.+++. |. ..|+++|+++.+++.|++.+. ..|+ ..++.|+.+|+.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-------------~~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-------------SKRMSFITADVLDV 186 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--------------SSEEEEES-GGGG
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-------------cCCeEEEecchhcc
Confidence 457999999998554 5556654 43 379999999999999999887 5566 36899999999876
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
. ..-..||+|+...+ +-........+|..+.+.++||+.++
T Consensus 187 ~----~dl~~~DvV~lAal--Vg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 187 T----YDLKEYDVVFLAAL--VGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -----GG----SEEEE-TT---S----SHHHHHHHHHHHS-TTSEEE
T ss_pred c----cccccCCEEEEhhh--cccccchHHHHHHHHHhhCCCCcEEE
Confidence 4 33468999985331 11223467889999999999999987
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00077 Score=69.24 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=88.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
+...+|.+|||+.+..|.=+.++|.. +.+-|+|.|.+..-+...+.++.+.|+ .+..++..|..
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--------------~ntiv~n~D~~ 302 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV--------------TNTIVSNYDGR 302 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC--------------CceEEEccCcc
Confidence 45678999999999999877777765 556899999999999999999999997 46667777776
Q ss_pred hcccccCCCCCceeEEEeccc--c--c---------------cccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 371 ELGESMQIQPHSVDVLVSEWM--G--Y---------------CLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~--~--~---------------~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
++.... +++ +||-|+.... + . ...+......+|..+..+++|||+|+-++|++..
T Consensus 303 ef~~~~-~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 303 EFPEKE-FPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred cccccc-cCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 653221 444 8999985421 1 0 0112233467788889999999999999998743
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00051 Score=67.96 Aligned_cols=116 Identities=21% Similarity=0.172 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCC-CCCC--------------------C----CCC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND-FWWD--------------------R----PQS 352 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~g-l~~~--------------------~----~~~ 352 (497)
..+||--|||.|+++..+|..|. .+-|-+.|--|+- +...+-.+. ..+. + ++.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli-~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLI-CSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHH-HHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 46899999999999999999999 7899999998874 333222111 0000 0 011
Q ss_pred CC--CCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 353 EG--NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 353 ~~--~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. .+...+...+..||+.+.-.. +-..+.+|+|+.++ ++-...+.-..|..+.+.|||||+.+
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~-s~~~~~~d~VvTcf---FIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGT-SSGAGSYDVVVTCF---FIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred cccccCCCCCCccccccceeEEecC-cCCCCccceEEEEE---EeechHHHHHHHHHHHHhccCCcEEE
Confidence 11 122233445566777665310 11234699999765 55555677889999999999999987
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=69.04 Aligned_cols=102 Identities=21% Similarity=0.326 Sum_probs=79.4
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
-++|-+|||.-.++..+-+.|...|+.+|.|+..++.+....... ..-+.+...++..+. +
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~---------------~~~~~~~~~d~~~l~----f 110 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE---------------RPEMQMVEMDMDQLV----F 110 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC---------------CcceEEEEecchhcc----C
Confidence 389999999999999999999999999999998887665543211 245788899988874 8
Q ss_pred CCCceeEEEeccccccccC-hh------hHHHHHHHHhccccCCcEEe
Q 010913 379 QPHSVDVLVSEWMGYCLLY-ES------MLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l~~-~~------~l~~vL~~~~r~LkpgG~li 419 (497)
+.++||+|+-..-...++. +. -....+.++.|+|+|||+.+
T Consensus 111 edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 111 EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 9999999998654333332 21 23456788999999999976
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=61.12 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=83.4
Q ss_pred HHHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 284 ~y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
....+|+. +.++.+|.+||=+|+.+|...-..+.- |.+.|+||+.|+.+.......+.+.
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---------------- 123 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---------------- 123 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----------------
Confidence 34555554 456788999999999999987777776 7678999999999877666655443
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.||-.+.+|+....... .-.+.+|+|+... ....+..-+...+...||+||.+++.
T Consensus 124 ~Ni~PIL~DA~~P~~Y~-~~Ve~VDviy~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 124 PNIIPILEDARKPEKYR-HLVEKVDVIYQDV-----AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred CCceeeecccCCcHHhh-hhcccccEEEEec-----CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 47888888886643222 2356799999753 22334455667889999999987743
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=60.85 Aligned_cols=105 Identities=24% Similarity=0.304 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 280 ~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.|.....+++ ..+.++.||||-.|.+..+|.+. .++.+++.|+++..++.|.+++.++++.
T Consensus 5 ~RL~~va~~V------~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~------------ 66 (226)
T COG2384 5 KRLTTVANLV------KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS------------ 66 (226)
T ss_pred HHHHHHHHHH------HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc------------
Confidence 4555565665 34556999999999999999998 5689999999999999999999999984
Q ss_pred CCceEEEecchhhcccccCCC-CCceeEEEeccccccccChhhHHHHHHHHhcccc
Q 010913 359 AGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLK 413 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lk 413 (497)
.++++..+|.... +. ...+|+|+...||-.+ ...+|.+....|+
T Consensus 67 -~~i~vr~~dgl~~-----l~~~d~~d~ivIAGMGG~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 67 -ERIDVRLGDGLAV-----LELEDEIDVIVIAGMGGTL-----IREILEEGKEKLK 111 (226)
T ss_pred -ceEEEeccCCccc-----cCccCCcCEEEEeCCcHHH-----HHHHHHHhhhhhc
Confidence 6899999998553 34 4489999988776532 3456666655555
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00048 Score=64.14 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+...+.|||||-|.+.+.++.. +..-++|+++-....+..+++++..+-.. ....-.++.+.+.+...+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~-------a~~~~~ni~vlr~namk~l-- 130 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS-------AEGQYPNISVLRTNAMKFL-- 130 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc-------cccccccceeeeccchhhc--
Confidence 4457899999999999999988 56789999999999999988887654210 0011246777777665542
Q ss_pred cCCCCCceeEEEeccccccccChhh----------HHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM----------LSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~----------l~~vL~~~~r~LkpgG~li 419 (497)
++-|---...-|.+++....- -..++.+..-+|++||.++
T Consensus 131 ----pn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 131 ----PNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred ----cchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 222222222223223221110 1346667778899999987
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=65.68 Aligned_cols=89 Identities=16% Similarity=0.280 Sum_probs=69.9
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.++..+.+.+|.+++|.=+|.|..|..+++. +..+|+|+|.++.+++.|++.+...+ +++.+
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---------------~R~~~ 73 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---------------GRVVL 73 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---------------CcEEE
Confidence 345555666678899999999999999999987 44799999999999999998875432 58999
Q ss_pred EecchhhcccccC-CCCCceeEEEec
Q 010913 365 VQGMVEELGESMQ-IQPHSVDVLVSE 389 (497)
Q Consensus 365 i~gd~~~l~~~l~-~~~~~fDvIvs~ 389 (497)
++++..++...+. ....++|.|+..
T Consensus 74 i~~nF~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 74 IHDNFANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred EeCCHHHHHHHHHhcCCCcccEEEEe
Confidence 9999988754321 133579999865
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=57.27 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl 345 (497)
.++++|+|||++-|-.++.++-+||+.|+++++++...+..+++++.+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 57899999999999999999999999999999999999999998877654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0049 Score=62.35 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=71.3
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
...+|+|.|.|..+..+... ..+|-+|++....+-.+...+. . .|..+-||..+- .
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~-----------------gV~~v~gdmfq~-----~ 234 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P-----------------GVEHVAGDMFQD-----T 234 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C-----------------Ccceeccccccc-----C
Confidence 78999999999999888885 5579999999877765555542 2 367777877553 2
Q ss_pred CCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 379 QPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
| +-|+|+.-| +|++. .+..++|.++...|+|||.|++-
T Consensus 235 P--~~daI~mkW---iLhdwtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 235 P--KGDAIWMKW---ILHDWTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred C--CcCeEEEEe---ecccCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 2 356999666 55554 45779999999999999998843
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00025 Score=66.14 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=72.7
Q ss_pred HHHHHHHHhCC-CC-CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 283 DSYRQAILENP-SL-MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 283 ~~y~~~i~~~~-~~-~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
+.+++.+.... .. ..+.++||+|+|.|-++..++.. ...|+|.+.|..|....++. +. .
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y--------------n 156 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY--------------N 156 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC--------------c
Confidence 45666665542 22 34689999999999999988765 45899999999988755543 22 1
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccC-CcEEecc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKP-GGAILPD 421 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkp-gG~li~~ 421 (497)
.+..+ ++. -.+-++|+|.|-. .|-..-++-.+|..+..+|+| +|.++..
T Consensus 157 Vl~~~-----ew~----~t~~k~dli~clN---lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 VLTEI-----EWL----QTDVKLDLILCLN---LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eeeeh-----hhh----hcCceeehHHHHH---HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 12211 111 1234799999744 333334677899999999999 8887744
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0018 Score=64.64 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=68.6
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc-
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM- 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd- 368 (497)
.....+|.+||-+|+|+ |.+++..|++ |+++|+.+|+++.-++.|++ + |. ..+......
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga--------------~~~~~~~~~~ 225 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA--------------TVTDPSSHKS 225 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC--------------eEEeeccccc
Confidence 34568899999999997 8899999998 99999999999999999987 3 32 111111111
Q ss_pred -hhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 -VEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 -~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+.+.+ .+....+|+.+... -....+++....|++||.++
T Consensus 226 ~~~~~~~~v~~~~g~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 226 SPQELAELVEKALGKKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred cHHHHHHHHHhhccccCCCeEEEcc---------CchHHHHHHHHHhccCCEEE
Confidence 11111000 12234589888643 23456667778899999976
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0043 Score=61.02 Aligned_cols=111 Identities=21% Similarity=0.204 Sum_probs=69.2
Q ss_pred CEEEEEcCCC--CHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 299 AVVMDIGCGT--GILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.-.||||||- -...-.+|+. +..+|+-||..+..+..++..+..+. ..+..++++|+.+...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--------------~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--------------RGRTAYVQADLRDPEA 135 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--------------TSEEEEEE--TT-HHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--------------CccEEEEeCCCCCHHH
Confidence 5699999993 3355566665 55699999999999999999886653 1348999999977653
Q ss_pred ccC-------C-CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQ-------I-QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~-------~-~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.+. + ....+-+++.. +.+++....++..++..+...|.||..|+++..+
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~-vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVA-VLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred HhcCHHHHhcCCCCCCeeeeeee-eeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 221 1 13445455543 3445566678999999999999999999966554
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0061 Score=54.16 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccC----
Q 010913 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY---- 397 (497)
Q Consensus 322 ~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~---- 397 (497)
+|+|+|+-+.+++.+++++...++. ++++++...-+.+...+ +.+++|+++-+ +||.-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-------------~~v~li~~sHe~l~~~i--~~~~v~~~iFN-LGYLPggDk~i 64 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-------------DRVTLILDSHENLDEYI--PEGPVDAAIFN-LGYLPGGDKSI 64 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-------------SGEEEEES-GGGGGGT----S--EEEEEEE-ESB-CTS-TTS
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-------------CcEEEEECCHHHHHhhC--ccCCcCEEEEE-CCcCCCCCCCC
Confidence 6999999999999999999999873 58999999998887432 23589999866 4553211
Q ss_pred ---hhhHHHHHHHHhccccCCcEEe
Q 010913 398 ---ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 398 ---~~~l~~vL~~~~r~LkpgG~li 419 (497)
...--..+..+.++|+|||++.
T Consensus 65 ~T~~~TTl~Al~~al~lL~~gG~i~ 89 (140)
T PF06962_consen 65 TTKPETTLKALEAALELLKPGGIIT 89 (140)
T ss_dssp B--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred CcCcHHHHHHHHHHHHhhccCCEEE
Confidence 2223456777889999999987
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0012 Score=69.54 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 281 r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
|...|...+-.......-..|+|..+|.|.++..|...+. ..+-.-+..-.-....+...||
T Consensus 349 ~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~V---WVMNVVP~~~~ntL~vIydRGL--------------- 410 (506)
T PF03141_consen 349 RVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPV---WVMNVVPVSGPNTLPVIYDRGL--------------- 410 (506)
T ss_pred HHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCc---eEEEecccCCCCcchhhhhccc---------------
Confidence 3444544442122222336899999999999999987754 2222222111111223333343
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
|- -..++.+..+.-+.+||+|.+..+......--.+..+|-+++|.|+|||.+++
T Consensus 411 -IG----~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 411 -IG----VYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred -ch----hccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 22 22333333456789999999876443434445678899999999999999985
|
; GO: 0008168 methyltransferase activity |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0026 Score=59.05 Aligned_cols=114 Identities=25% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHH------HHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAA------VATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~------~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
++....+.+|.+|+|+-.|.|.++..++.. |. +.|+++-..+...- ..+...+.... .
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~--------------a 105 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY--------------A 105 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--------------h
Confidence 344567889999999999999999999987 44 47888766553211 11111111221 2
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEecc----ccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEW----MGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~----~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.+-.....+ .+++..|+++... |..-..+......+..++++.|||||+++..
T Consensus 106 N~e~~~~~~~A~-----~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 106 NVEVIGKPLVAL-----GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred hhhhhCCccccc-----CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 445555544444 2566777776532 2223345566788999999999999998743
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.003 Score=63.45 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=73.9
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCC
Q 010913 271 IHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWD 348 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~ 348 (497)
||..|.....-..+-.+.+.....-+.+++|||+|.|.|.....+-.. -...++.++.|+..-++.......-+.
T Consensus 87 ias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--- 163 (484)
T COG5459 87 IASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--- 163 (484)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc---
Confidence 344444333322233334444445677889999999999876655544 225788999998665554444332222
Q ss_pred CCCCCCCCCCCCceEEEecchhhcccccCCC-CCceeEEEeccccccccCh---hhHHHHHHHHhccccCCcEEec
Q 010913 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYE---SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 349 ~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l~~~---~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.......+++..-. ++++ ...|++|+ +..-|++. ..+...+..+..+++|||.|++
T Consensus 164 -----------~~td~r~s~vt~dR--l~lp~ad~ytl~i---~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 164 -----------EKTDWRASDVTEDR--LSLPAADLYTLAI---VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred -----------ccCCCCCCccchhc--cCCCccceeehhh---hhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 11222223332211 1232 45677777 33344432 2344577888899999999884
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0022 Score=61.93 Aligned_cols=96 Identities=22% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHhCCCCCCCC--EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 289 ILENPSLMKGA--VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 289 i~~~~~~~~~~--~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
|.+..++.+|. +|||.-+|-|.-++.+|..|+ +|+++|.|+.+....+.-++...-.. ........+|++++
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~-----~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDP-----ELLAEAMRRIQLIH 138 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHST-----TTHHHHHHHEEEEE
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCc-----HhHHHHHhCCEEEc
Confidence 44445556654 999999999999999998898 89999999988766654433211000 00000124899999
Q ss_pred cchhhcccccCCCCCceeEEEeccccc
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~ 393 (497)
+|..++- ..+..+||||+..+|+-
T Consensus 139 ~d~~~~L---~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 139 GDALEYL---RQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp S-CCCHC---CCHSS--SEEEE--S--
T ss_pred CCHHHHH---hhcCCCCCEEEECCCCC
Confidence 9998873 34578999999988754
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.021 Score=55.12 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=64.1
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..++....-..|++||-+|=+. ..|+.+|-. ..++|+.+|+++++++.-++.+++.|+ +|+.+
T Consensus 34 a~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl---------------~i~~~ 97 (243)
T PF01861_consen 34 AALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL---------------PIEAV 97 (243)
T ss_dssp HHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----------------EEEE
T ss_pred HHHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC---------------ceEEE
Confidence 3344444456899999999555 344444443 346999999999999999999999987 59999
Q ss_pred ecchhhcccccCCC---CCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 366 QGMVEELGESMQIQ---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 366 ~gd~~~l~~~l~~~---~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+.|+.+. +| .++||++++.+. |. ...+.-++.+....||..|.
T Consensus 98 ~~DlR~~-----LP~~~~~~fD~f~TDPP-yT---~~G~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 98 HYDLRDP-----LPEELRGKFDVFFTDPP-YT---PEGLKLFLSRGIEALKGEGC 143 (243)
T ss_dssp ---TTS--------TTTSS-BSEEEE----SS---HHHHHHHHHHHHHTB-STT-
T ss_pred Eeccccc-----CCHHHhcCCCEEEeCCC-CC---HHHHHHHHHHHHHHhCCCCc
Confidence 9998774 44 479999999862 22 35667788888888887663
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0068 Score=63.12 Aligned_cols=102 Identities=20% Similarity=0.143 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.+.+|||.=+|+|+=++..++. |..+|++-|+|+.+++..+++++.|++.. +++++.+.|+..+-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~------------~~~~v~~~DAn~ll- 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED------------ERIEVSNMDANVLL- 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG------------CCEEEEES-HHHHH-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC------------ceEEEehhhHHHHh-
Confidence 3568999999999988888876 66899999999999999999999999842 26899999998872
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
......||+|=..+.| .+..+|..+.+.++.||+|.+
T Consensus 116 --~~~~~~fD~IDlDPfG-------Sp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 116 --YSRQERFDVIDLDPFG-------SPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp --CHSTT-EEEEEE--SS---------HHHHHHHHHHEEEEEEEEE
T ss_pred --hhccccCCEEEeCCCC-------CccHhHHHHHHHhhcCCEEEE
Confidence 1257889999876643 345688888889999999884
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0012 Score=60.90 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-chhh
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-MVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-d~~~ 371 (497)
+.|+.+|||+||.+|..+..+.+. +.+.|+|||+-... . ...++++.+ |+.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p-----------------~~Ga~~i~~~dvtd 121 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------P-----------------PEGATIIQGNDVTD 121 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------C-----------------CCCcccccccccCC
Confidence 467999999999999999998887 45789999985411 1 123455555 4433
Q ss_pred ccc----ccCCCCCceeEEEecccc----ccccChhh----HHHHHHHHhccccCCcEEe
Q 010913 372 LGE----SMQIQPHSVDVLVSEWMG----YCLLYESM----LSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~----~l~~~~~~fDvIvs~~~~----~~l~~~~~----l~~vL~~~~r~LkpgG~li 419 (497)
... ...+|...+|+|+|.+.. .-+..... -.+++.-....++|+|.++
T Consensus 122 p~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 122 PETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred HHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 210 012567899999997421 11111111 1344555567788999987
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=52.25 Aligned_cols=104 Identities=16% Similarity=0.106 Sum_probs=74.6
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+...+..+.+|+|.|.|.+-+.+++.|....+|+++++-.+.+++-..-+.|. .+...|.+.|+-
T Consensus 66 Sll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-------------~k~trf~Rkdlw 132 (199)
T KOG4058|consen 66 SLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-------------AKSTRFRRKDLW 132 (199)
T ss_pred HHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-------------ccchhhhhhhhh
Confidence 3334455578999999999999999999987999999999999998887777776 357888888887
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+ +.+-.+=+|+ .-++++..+-..+..-+..+..++
T Consensus 133 K~d----l~dy~~vviF--------gaes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 133 KVD----LRDYRNVVIF--------GAESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred hcc----ccccceEEEe--------ehHHHHhhhHHHHHhhCcCCCeEE
Confidence 764 4343444444 223444445555555666666666
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.013 Score=59.79 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=62.9
Q ss_pred CCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
....||.+|+-+|+| .|.++..+|++ |+ +|+++|.|+.-.+.|++. | .-.++...-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~l----G----------------Ad~~i~~~~~ 220 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKL----G----------------ADHVINSSDS 220 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHh----C----------------CcEEEEcCCc
Confidence 456889999999999 24578888885 96 999999999988888776 2 2234443211
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. ..-.+.||+|+... . ...+....+.|++||.++
T Consensus 221 ~~~---~~~~~~~d~ii~tv--------~--~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 221 DAL---EAVKEIADAIIDTV--------G--PATLEPSLKALRRGGTLV 256 (339)
T ss_pred hhh---HHhHhhCcEEEECC--------C--hhhHHHHHHHHhcCCEEE
Confidence 111 01122499999543 1 334555668899999998
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0097 Score=56.53 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC-
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ- 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~- 377 (497)
.++|||||=+..... ...+.-.|++||+++. .-.+.+.|+.+.+ +|
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns~-----------------------------~~~I~qqDFm~rp--lp~ 99 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ-----------------------------HPGILQQDFMERP--LPK 99 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCCC-----------------------------CCCceeeccccCC--CCC
Confidence 699999987543322 2334447999999861 1234566776653 11
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
.+.++||+|+++.+..++........++..+.++|+|+|.
T Consensus 100 ~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 100 NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 2367999999887666666677778999999999999999
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.03 Score=57.85 Aligned_cols=96 Identities=26% Similarity=0.355 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-c-hhh
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-M-VEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-d-~~~ 371 (497)
.++.+|+-+|||+ |.++..+++. |+++|+++|.++.-++.|++.... +.+..... + ...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----------------~~~~~~~~~~~~~~ 229 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-----------------DVVVNPSEDDAGAE 229 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-----------------eEeecCccccHHHH
Confidence 4455999999998 8888888887 999999999999999988875311 11111111 1 111
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
... ......+|+++=. .+ ....+..+.++++|||.++
T Consensus 230 ~~~--~t~g~g~D~vie~-~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 230 ILE--LTGGRGADVVIEA-VG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred HHH--HhCCCCCCEEEEC-CC--------CHHHHHHHHHHhcCCCEEE
Confidence 100 0123479999843 22 2447778889999999987
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.039 Score=56.33 Aligned_cols=120 Identities=16% Similarity=0.112 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCC-----CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGA-----SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~-----~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
+.+.+|.+|||+.+..|.=+..+.++.. ..|++-|.++.-+......+.... ..++.+...
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--------------~~~~~v~~~ 216 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--------------SPNLLVTNH 216 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--------------Ccceeeecc
Confidence 4568999999999999998877777622 279999999887776666553321 234444444
Q ss_pred chhhccccc-----CCCCCceeEEEeccc--ccccc-C-----------------hhhHHHHHHHHhccccCCcEEeccC
Q 010913 368 MVEELGESM-----QIQPHSVDVLVSEWM--GYCLL-Y-----------------ESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 368 d~~~l~~~l-----~~~~~~fDvIvs~~~--~~~l~-~-----------------~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++...+... +.....||-|++... +...+ . ..-...+|.+-.++|||||+++-+|
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 444332211 124457999887531 11110 0 1112357788889999999999999
Q ss_pred ceeE
Q 010913 423 ATMF 426 (497)
Q Consensus 423 ~~~~ 426 (497)
|++.
T Consensus 297 CSLn 300 (375)
T KOG2198|consen 297 CSLN 300 (375)
T ss_pred cCCC
Confidence 9873
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0027 Score=62.56 Aligned_cols=98 Identities=26% Similarity=0.306 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCCHhHH-HHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSL-FAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~-~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+.+|+|+-+|-|.+++ ++.++||+.|+|+|.+|-.++..++.+..|+.. .+..++.||-...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-------------~r~~i~~gd~R~~--- 257 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-------------DRCRITEGDNRNP--- 257 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-------------HHHHhhhcccccc---
Confidence 45899999999999999 999999999999999999999999999888763 4666667766554
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE-Ee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA-IL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~-li 419 (497)
-+....|-|.. |..-..+..... +.++|||.|- ++
T Consensus 258 --~~~~~AdrVnL---GLlPSse~~W~~----A~k~Lk~eggsil 293 (351)
T KOG1227|consen 258 --KPRLRADRVNL---GLLPSSEQGWPT----AIKALKPEGGSIL 293 (351)
T ss_pred --Cccccchheee---ccccccccchHH----HHHHhhhcCCcEE
Confidence 45677888873 221112222232 3456777554 54
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=56.66 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+..+++||-||.|.|......+++ -...+.-+|+....++..++.+...... ....+|.+.-||...+
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g----------y~~~~v~l~iGDG~~f 187 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG----------YEGKKVKLLIGDGFLF 187 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc----------cCCCceEEEeccHHHH
Confidence 3456799999999999999998888 3468999999999999988877653211 1247899999998776
Q ss_pred ccccCCCCCceeEEEeccccccccChhh-HHHHHHHHhccccCCcEEeccCcee
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESM-LSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~-l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
-+ ..+.++||||+.+.-........- ....+..+.+.|||||+++.....+
T Consensus 188 l~--~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 188 LE--DLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred HH--HhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 43 234789999996531111111121 2456677889999999998554333
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.026 Score=54.83 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
+.+.+++... +.++.+|+|||||.=-+++.+... +...++|+|++..+++.....+...+. +
T Consensus 93 d~fY~~if~~--~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~---------------~ 155 (251)
T PF07091_consen 93 DEFYDEIFGR--IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV---------------P 155 (251)
T ss_dssp HHHHHHHCCC--S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----------------C
T ss_pred HHHHHHHHhc--CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC---------------C
Confidence 3445555443 355899999999999998877655 224999999999999999998888775 5
Q ss_pred eEEEecchhhcccccCCCCCceeEEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSE 389 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~ 389 (497)
..+...|+..- .+....|+.+..
T Consensus 156 ~~~~v~Dl~~~-----~~~~~~DlaLll 178 (251)
T PF07091_consen 156 HDARVRDLLSD-----PPKEPADLALLL 178 (251)
T ss_dssp EEEEEE-TTTS-----HTTSEESEEEEE
T ss_pred cceeEeeeecc-----CCCCCcchhhHH
Confidence 67777776553 367789999843
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.011 Score=59.45 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=80.3
Q ss_pred HHHHhC-CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHHHhCCCCCCCCCCCCCCCC
Q 010913 287 QAILEN-PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV-------ATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 287 ~~i~~~-~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~-------A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+|..+ ....+|..|+|--.|||.+...+|.-|+ .|+|.|++-.++.. .+.+++..|..
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~------------ 263 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS------------ 263 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCc------------
Confidence 344444 4567899999999999999999999999 99999999988862 23455555532
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccC-------------------------------hhhHHHHHHH
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-------------------------------ESMLSSVLFA 407 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-------------------------------~~~l~~vL~~ 407 (497)
+.-+.++.+|..+.. + -....||.|||.+. |.+.- ...+..+|.-
T Consensus 264 ~~fldvl~~D~sn~~--~-rsn~~fDaIvcDPP-YGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~f 339 (421)
T KOG2671|consen 264 SQFLDVLTADFSNPP--L-RSNLKFDAIVCDPP-YGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCF 339 (421)
T ss_pred chhhheeeecccCcc--h-hhcceeeEEEeCCC-cchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHh
Confidence 134567777776643 1 12558999999862 22100 1223445555
Q ss_pred HhccccCCcEEecc
Q 010913 408 RDQWLKPGGAILPD 421 (497)
Q Consensus 408 ~~r~LkpgG~li~~ 421 (497)
..+.|..||++++-
T Consensus 340 ss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 340 SSRRLVDGGRLVFW 353 (421)
T ss_pred hHhhhhcCceEEEe
Confidence 67889999998843
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.028 Score=54.88 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe---cchhhcc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ---GMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~---gd~~~l~ 373 (497)
.+.+||++|+|||..++.+|..+...|.-.|....+.. .+.+...++.. .+..+..+.+.. +...+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~--------l~~~g~~v~v~~L~Wg~~~~~~ 156 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIA--------LNQLGGSVIVAILVWGNALDVS 156 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhh--------hhhcCCceeEEEEecCCcccHh
Confidence 46789999999999999999874448999998775443 44443333321 001111332222 2222222
Q ss_pred cccCCCCCc-eeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHS-VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~-fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+. +|+|++.- ++..++....++..+..+|..+|+++
T Consensus 157 ----~~~~~~~DlilasD---vvy~~~~~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 157 ----FRLPNPFDLILASD---VVYEEESFEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred ----hccCCcccEEEEee---eeecCCcchhHHHHHHHHHhcCCeEE
Confidence 22233 99999544 55566666777777888888888544
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.055 Score=53.91 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=71.2
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
+.+.++..+.+.++...+|.--|.|+.|..+.+.. .++++|+|.++.+++.|++++...+ +++
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---------------~r~ 75 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---------------GRV 75 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---------------CcE
Confidence 34556677778889999999999999999988873 3689999999999999999987764 599
Q ss_pred EEEecchhhcccccC-CCCCceeEEEec
Q 010913 363 EVVQGMVEELGESMQ-IQPHSVDVLVSE 389 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~-~~~~~fDvIvs~ 389 (497)
+++++++.++...++ ...+++|.|+..
T Consensus 76 ~~v~~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 76 TLVHGNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred EEEeCcHHHHHHHHHhcCCCceeEEEEe
Confidence 999999887753322 224578887743
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.035 Score=52.58 Aligned_cols=119 Identities=16% Similarity=0.254 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCC
Q 010913 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEG 354 (497)
Q Consensus 280 ~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-----G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~ 354 (497)
.-.-.|...|.+ .++.+|+++|.-.|+.++++|.. +..+|+|||+.-... .++.+....+
T Consensus 19 ~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~--------- 83 (206)
T PF04989_consen 19 QDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPM--------- 83 (206)
T ss_dssp HHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG------------
T ss_pred HHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccc---------
Confidence 334456666655 35789999999999988887753 346999999964332 1222222233
Q ss_pred CCCCCCceEEEecchhhcccccCC----CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 355 NINNAGKMEVVQGMVEELGESMQI----QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 355 ~~~~~~~i~~i~gd~~~l~~~l~~----~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++|++++|+..+.....+. ......+|+-.. . +........|.....+++||++++..
T Consensus 84 ----~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs---~-H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 84 ----SPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDS---S-HTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp -----TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred ----cCceEEEECCCCCHHHHHHHHHhhccCCceEEEECC---C-ccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 26899999998654311111 123445666432 1 22234556777799999999998743
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.043 Score=59.24 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=36.6
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..++.+|+-+|||. |..++..|+. |+ .|+++|.++.-++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 46799999999997 7788888877 98 89999999987776665
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.029 Score=53.79 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=72.0
Q ss_pred HHHHHH---hCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 285 YRQAIL---ENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 285 y~~~i~---~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
+...|+ .+..+.+|.+||=+|+++|..--..+.. |. .-|+||+.|+..=......+++ .
T Consensus 141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------------R 204 (317)
T KOG1596|consen 141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------------R 204 (317)
T ss_pred HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------------c
Confidence 344443 4677899999999999999876666655 33 5799999997643322222211 1
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.||..|.-|+....+. .....-+|+|++.. ..+....-+.-.....||+||.++++..
T Consensus 205 tNiiPIiEDArhP~KY-RmlVgmVDvIFaDv-----aqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 205 TNIIPIIEDARHPAKY-RMLVGMVDVIFADV-----AQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CCceeeeccCCCchhe-eeeeeeEEEEeccC-----CCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 4566666666543211 12234688888753 1222233344456889999999985543
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0038 Score=61.49 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=66.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT-QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~-~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
...|++|||+|||+|..++++...|+..|...|.|...+..-. .++..+-. .....+....-..+....+.++.
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~-----~~~~~~e~~~~~~i~~s~l~dg~ 188 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSH-----AGVEEKENHKVDEILNSLLSDGV 188 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchh-----hhhhhhhcccceeccccccccch
Confidence 4689999999999999999999999789999999987763111 00000000 00000011112222333111110
Q ss_pred cccCCCC--CceeEEEeccccccccChhhHHHH-HHHHhccccCCcEEecc
Q 010913 374 ESMQIQP--HSVDVLVSEWMGYCLLYESMLSSV-LFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~--~~fDvIvs~~~~~~l~~~~~l~~v-L~~~~r~LkpgG~li~~ 421 (497)
-... ..||+|.+.-+.|.. .....+ +..+...++++|+++..
T Consensus 189 ---~~~t~~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 189 ---FNHTERTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ---hhhccccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhhh
Confidence 0112 379999976655543 333333 55677888999988743
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.045 Score=57.15 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=66.9
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc-h
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM-V 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd-~ 369 (497)
..+.++.+||.+|||. |.++..+|++ |+.+|++++.++...+.+++.. +. ..+.....+ .
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~--------------~vi~~~~~~~~ 242 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA--------------ETINFEEVDDV 242 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc--------------EEEcCCcchHH
Confidence 4457889999999988 8888888887 7767999999998888777642 11 112211111 1
Q ss_pred -hhcccccCCCCCceeEEEeccccc------------cccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 -EELGESMQIQPHSVDVLVSEWMGY------------CLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 -~~l~~~l~~~~~~fDvIvs~~~~~------------~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. + .....+|+|+...-+. .+....+....+..+.+.|+|+|.++
T Consensus 243 ~~~l~~-~-~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 303 (386)
T cd08283 243 VEALRE-L-TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS 303 (386)
T ss_pred HHHHHH-H-cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence 11110 0 1234699998642110 01111223557788889999999987
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.044 Score=55.95 Aligned_cols=99 Identities=21% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+.+|||.=+|||+=++..|.. |..+|+.-|+|+.+++.++++++.|.. ....++..|+..+-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~--------------~~~~v~n~DAN~lm~-- 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG--------------EDAEVINKDANALLH-- 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc--------------ccceeecchHHHHHH--
Confidence 789999999999988888877 666999999999999999999999843 355666688877631
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
-....||+|=..++|. +..++.++.+.++.||+|.+
T Consensus 117 -~~~~~fd~IDiDPFGS-------PaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 117 -ELHRAFDVIDIDPFGS-------PAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred -hcCCCccEEecCCCCC-------CchHHHHHHHHhhcCCEEEE
Confidence 1237899998666443 23466677777888999873
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.024 Score=56.56 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=52.1
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
+|+|+.||.|.++..+.++|+..|.++|+++.+++..+.+.. . .++.+|+.++.. ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-------------------~-~~~~~Di~~~~~---~~ 58 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-------------------N-KLIEGDITKIDE---KD 58 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-------------------C-CCccCccccCch---hh
Confidence 689999999999999999999889999999988776655531 1 256678777642 11
Q ss_pred -CCceeEEEecc
Q 010913 380 -PHSVDVLVSEW 390 (497)
Q Consensus 380 -~~~fDvIvs~~ 390 (497)
...+|+|+..+
T Consensus 59 ~~~~~D~l~~gp 70 (275)
T cd00315 59 FIPDIDLLTGGF 70 (275)
T ss_pred cCCCCCEEEeCC
Confidence 35699999754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0095 Score=62.63 Aligned_cols=106 Identities=21% Similarity=0.145 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||.=|+||+-++..|+. |..+|++.|.++..+..-+++++.|+.. +.+...++|+..+-
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-------------~ive~~~~DA~~lM 174 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-------------DIVEPHHSDANVLM 174 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-------------hhcccccchHHHHH
Confidence 46678999999999999999887 7789999999999999999999998763 57778888876654
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
-.-+-....||+|=..+.|. ...+|..+.+.++.||+|...
T Consensus 175 ~~~~~~~~~FDvIDLDPyGs-------~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 175 YEHPMVAKFFDVIDLDPYGS-------PSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred HhccccccccceEecCCCCC-------ccHHHHHHHHHhhcCCEEEEE
Confidence 22223357899998766432 345788888899999999843
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.074 Score=54.48 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+|.+||-+|||. |.++..+|++ |+.+|+++|.++.-++.|++ .|.. ..+..-..++.++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~-------------~vi~~~~~~~~~~ 229 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD-------------KLVNPQNDDLDHY 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc-------------EEecCCcccHHHH
Confidence 34688999999874 6677777777 88789999999987776654 2320 0011111122222
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
. ...+.+|+|+... + . ...+....++|+|||.++
T Consensus 230 ~----~~~g~~D~vid~~-G----~----~~~~~~~~~~l~~~G~iv 263 (343)
T PRK09880 230 K----AEKGYFDVSFEVS-G----H----PSSINTCLEVTRAKGVMV 263 (343)
T ss_pred h----ccCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 1 1123589998532 1 1 234556678899999988
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.023 Score=57.23 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=61.0
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.++..+...++.+++|.--|.|+.|..+.+. +..+|+|+|.++.+++.|++++... .+++.++
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---------------~~r~~~~ 74 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---------------DDRFIFI 74 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---------------CTTEEEE
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---------------cceEEEE
Confidence 33444455678899999999999999999987 4479999999999999888776433 3689999
Q ss_pred ecchhhcccccC-C-CCCceeEEEec
Q 010913 366 QGMVEELGESMQ-I-QPHSVDVLVSE 389 (497)
Q Consensus 366 ~gd~~~l~~~l~-~-~~~~fDvIvs~ 389 (497)
+++..++...+. . ...++|.|+..
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILFD 100 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEEE
T ss_pred eccHHHHHHHHHHccCCCccCEEEEc
Confidence 999888764322 1 34589999854
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.18 Score=54.54 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=79.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G----ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G----~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
...+.|...+...+..+|+|..||+|.+...+++. + ...++|.|+++.....|+-++--+|+.
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~------------ 240 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE------------ 240 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC------------
Confidence 34455555555567779999999999987766665 3 246999999999999999998877762
Q ss_pred CCceEEEecchhhccccc-CCCCCceeEEEecccccc---------------------ccCh-hhHHHHHHHHhccccCC
Q 010913 359 AGKMEVVQGMVEELGESM-QIQPHSVDVLVSEWMGYC---------------------LLYE-SMLSSVLFARDQWLKPG 415 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l-~~~~~~fDvIvs~~~~~~---------------------l~~~-~~l~~vL~~~~r~Lkpg 415 (497)
..+....++...-+... +....+||.|++++.... +... ..-..++..+...|+||
T Consensus 241 -~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~ 319 (489)
T COG0286 241 -GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG 319 (489)
T ss_pred -ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence 13445555443321100 123467999999864320 0011 11257788899999998
Q ss_pred cE
Q 010913 416 GA 417 (497)
Q Consensus 416 G~ 417 (497)
|+
T Consensus 320 g~ 321 (489)
T COG0286 320 GR 321 (489)
T ss_pred ce
Confidence 74
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.2 Score=52.21 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=18.2
Q ss_pred hHHHHHHHHhccccCCcEEecc
Q 010913 400 MLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 400 ~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++..+|..+.+-|.|||.+++.
T Consensus 215 D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 215 DLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred HHHHHHHHHHHHhccCcEEEEE
Confidence 4567888899999999999943
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.29 Score=47.92 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=71.5
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHH---c-C--CCEEEEEeCCHH---------------------
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQ---A-G--ASRVIAVEASEK--------------------- 331 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~---~-G--~~~V~gvD~S~~--------------------- 331 (497)
..|...+...+.......-+..|++.||-.|..+++++. . + ..+|++.|-=+.
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 455667777777666555568999999999987766543 1 3 257888885321
Q ss_pred -----HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHH
Q 010913 332 -----MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF 406 (497)
Q Consensus 332 -----~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~ 406 (497)
..+..++++...|+ ..+++.++.|.+.+.-.. .+..++-++... +-.+++. ..+|.
T Consensus 136 ~~~~~s~e~V~~n~~~~gl------------~~~~v~~vkG~F~dTLp~--~p~~~IAll~lD----~DlYesT-~~aLe 196 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGL------------LDDNVRFVKGWFPDTLPD--APIERIALLHLD----CDLYEST-KDALE 196 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTT------------SSTTEEEEES-HHHHCCC---TT--EEEEEE-------SHHHH-HHHHH
T ss_pred cccccCHHHHHHHHHHcCC------------CcccEEEECCcchhhhcc--CCCccEEEEEEe----ccchHHH-HHHHH
Confidence 12222233323332 236899999999875211 223444444422 3344443 45888
Q ss_pred HHhccccCCcEEeccCcee
Q 010913 407 ARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 407 ~~~r~LkpgG~li~~~~~~ 425 (497)
.++..|.|||+|+++....
T Consensus 197 ~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 197 FLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHGGGEEEEEEEEESSTTT
T ss_pred HHHhhcCCCeEEEEeCCCC
Confidence 8999999999999665433
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.22 Score=51.58 Aligned_cols=47 Identities=36% Similarity=0.531 Sum_probs=36.0
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
...+.+|.+||-.|+|. |.++..+|++ |+.+|+++|.++.-.+.|++
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 34567889999999874 5666777776 88779999999987776654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.37 Score=50.81 Aligned_cols=93 Identities=25% Similarity=0.365 Sum_probs=58.6
Q ss_pred HHHHhCCC-CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 287 QAILENPS-LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 287 ~~i~~~~~-~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
+.|++... ..+|++|+-+|||. |.....+++. |+ +|+++|.++.-...|+. .|. .
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~-----------------~ 247 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY-----------------E 247 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC-----------------E
Confidence 44444433 36899999999997 6666656655 88 89999999876555543 332 1
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHH-HHhccccCCcEEe
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF-ARDQWLKPGGAIL 419 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~-~~~r~LkpgG~li 419 (497)
.+ +..+. + ..+|+|+... + . ..++. +..+.+|+||+++
T Consensus 248 ~~--~~~e~-----v--~~aDVVI~at-G-------~-~~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 248 VM--TMEEA-----V--KEGDIFVTTT-G-------N-KDIITGEHFEQMKDGAIVC 286 (413)
T ss_pred Ec--cHHHH-----H--cCCCEEEECC-C-------C-HHHHHHHHHhcCCCCcEEE
Confidence 11 12222 1 3479998542 1 1 22444 3478999999987
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.24 Score=50.74 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+|.+||-+|||. |.++..++++ |+.+|+++|.++.-++.|++ .+ ....+ .+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~----------------~~~~~----~~ 216 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD----------------ETYLI----DD 216 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC----------------ceeeh----hh
Confidence 46789999999875 5566665653 66689999999877766653 22 11111 11
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ....+|+|+-.. +. ......+....++|++||.++
T Consensus 217 ~~-----~~~g~d~viD~~-G~-----~~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 217 IP-----EDLAVDHAFECV-GG-----RGSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred hh-----hccCCcEEEECC-CC-----CccHHHHHHHHHhCcCCcEEE
Confidence 11 112489998432 21 012345667778999999987
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.21 Score=49.96 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=42.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~ 342 (497)
.+|.+|||.-||+|..++.+.+.|- +.+|+|+++..++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 6899999999999999999999877 999999999999999999753
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.28 Score=47.50 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=42.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~ 342 (497)
.+|..|||.-||+|..+..+.+.|- +.+|+|+++...+.|.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 5889999999999999999988887 899999999999999988765
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.14 Score=48.66 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~ 338 (497)
.+|..|||.-||+|..+..+.+.|- +.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 6799999999999999999999887 89999999999998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.42 Score=48.16 Aligned_cols=97 Identities=25% Similarity=0.292 Sum_probs=60.3
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-c
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-M 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-d 368 (497)
...+.++.+||..|+|. |..+..+|+. |+ +|++++.++...+.+++ .|. +.+-.... .
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~--------------~~~~~~~~~~ 220 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGA--------------DEVLNSLDDS 220 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCC--------------CEEEcCCCcC
Confidence 34467788999988763 7777777876 77 79999999987776643 232 11110010 1
Q ss_pred hhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
... +. ......+|+|+... + . ...+....+.|+++|.++
T Consensus 221 ~~~~~~---~~~~~~~D~vid~~-g----~----~~~~~~~~~~l~~~G~~v 260 (338)
T cd08254 221 PKDKKA---AGLGGGFDVIFDFV-G----T----QPTFEDAQKAVKPGGRIV 260 (338)
T ss_pred HHHHHH---HhcCCCceEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 100 10 12356799998532 1 1 235667789999999987
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.21 Score=49.63 Aligned_cols=93 Identities=28% Similarity=0.289 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE--ecchhh
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV--QGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i--~gd~~~ 371 (497)
.++.+||-+|+|+ |.++..+|++ |+.+|+++|.++.-.+.|++ .|.. ..+... ...+..
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-------------~~i~~~~~~~~~~~ 181 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-------------ALAEPEVLAERQGG 181 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-------------EecCchhhHHHHHH
Confidence 4788999999875 5666677776 88679999999876666554 2320 001100 001111
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ .....+|+|+-.. + . ...+....+.|+|+|.++
T Consensus 182 ~-----~~~~g~d~vid~~-G----~----~~~~~~~~~~l~~~G~iv 215 (280)
T TIGR03366 182 L-----QNGRGVDVALEFS-G----A----TAAVRACLESLDVGGTAV 215 (280)
T ss_pred H-----hCCCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEE
Confidence 1 1234689998431 1 1 235566678899999987
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.32 Score=50.06 Aligned_cols=46 Identities=33% Similarity=0.527 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|||. |.++..+|++ |+.+|++++.++.-.+.+++
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3567899999999864 6667777777 88679999999887776643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.14 Score=51.65 Aligned_cols=68 Identities=31% Similarity=0.311 Sum_probs=52.5
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
+|+|+-||.|.+++.+.++|...|.|+|+++.+++.-+.+. + ....+|+.++... .++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~-------------------~--~~~~~Di~~~~~~-~l~ 59 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF-------------------P--EVICGDITEIDPS-DLP 59 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH-------------------T--EEEESHGGGCHHH-HHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc-------------------c--ccccccccccccc-ccc
Confidence 69999999999999999999889999999998777666664 2 7788999887532 233
Q ss_pred CCceeEEEecc
Q 010913 380 PHSVDVLVSEW 390 (497)
Q Consensus 380 ~~~fDvIvs~~ 390 (497)
. .+|+++..+
T Consensus 60 ~-~~D~l~ggp 69 (335)
T PF00145_consen 60 K-DVDLLIGGP 69 (335)
T ss_dssp H-T-SEEEEE-
T ss_pred c-cceEEEecc
Confidence 3 599999754
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.079 Score=44.71 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCC
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEAS 329 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S 329 (497)
+....+|||||+|.+...|.+.|. .-.|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456789999999999999999998 78899964
|
; GO: 0008168 methyltransferase activity |
| >PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.05 Score=33.79 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=22.9
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcC
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
+..|..|+..|++...+..|++..|+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 35799999999999999999987664
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.71 Score=46.90 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=57.6
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-.+.+++. |.. ..+.....+..
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~-------------~~i~~~~~~~~ 221 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD-------------FVINSGQDDVQ 221 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC-------------EEEcCCcchHH
Confidence 3456789999998864 5566667776 885699999998776666442 320 01111111111
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+.. + .....+|+|+-.. + . ...+....+.|+++|.++
T Consensus 222 ~~~~-~-~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 222 EIRE-L-TSGAGADVAIECS-G----N----TAARRLALEAVRPWGRLV 259 (339)
T ss_pred HHHH-H-hCCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 1110 0 1234699998432 1 1 223445567899999987
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.49 Score=48.60 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeC---CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEA---SEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~---S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
..+|.+||-+|+|. |.++..+|++ |+ +|++++. ++.-.+.|+ ..|. +.+.....+.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~----~~Ga--------------~~v~~~~~~~ 230 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE----ELGA--------------TYVNSSKTPV 230 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH----HcCC--------------EEecCCccch
Confidence 45788999999875 6677777777 88 8999987 555444443 3342 1111101111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+. .....+|+|+-.. + . ...+....+.|++||.++
T Consensus 231 ~~~-----~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 231 AEV-----KLVGEFDLIIEAT-G----V----PPLAFEALPALAPNGVVI 266 (355)
T ss_pred hhh-----hhcCCCCEEEECc-C----C----HHHHHHHHHHccCCcEEE
Confidence 111 0124689998532 1 1 225566778899999987
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.1 Score=45.95 Aligned_cols=109 Identities=23% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc------------C-----CCEEEEEeCCHHHH-HHHHH------HHHhCCCCCCC
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA------------G-----ASRVIAVEASEKMA-AVATQ------IAKDNDFWWDR 349 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~------------G-----~~~V~gvD~S~~~i-~~A~~------~~~~~gl~~~~ 349 (497)
.....-+|+|+||.+|..++.+... + .-+|+--|.-.+=- ...+. .....+-
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~---- 88 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRN---- 88 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTS----
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCce----
Confidence 3455679999999999987765542 1 01666666542211 11111 1111000
Q ss_pred CCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccC--------------------------------
Q 010913 350 PQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-------------------------------- 397 (497)
Q Consensus 350 ~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-------------------------------- 397 (497)
=-+.-+.|....- -+|.+++|+++|....+.|..
T Consensus 89 ----------~f~~gvpgSFy~r----LfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay 154 (334)
T PF03492_consen 89 ----------YFVSGVPGSFYGR----LFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAY 154 (334)
T ss_dssp ----------EEEEEEES-TTS------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHH
T ss_pred ----------EEEEecCchhhhc----cCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHH
Confidence 0123344555443 278999999998541111110
Q ss_pred ----hhhHHHHHHHHhccccCCcEEec
Q 010913 398 ----ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 398 ----~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++..+|..+.+=|+|||++++
T Consensus 155 ~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 181 (334)
T PF03492_consen 155 AKQFQKDFSSFLKARAEELVPGGRMVL 181 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhheeccCcEEEE
Confidence 24567888999999999999984
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.36 Score=52.19 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..++.+|+-+|||. |..+..+++. |+ .|+++|.++..++.++.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 34678999999997 6777777776 88 79999999986665554
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.2 Score=36.85 Aligned_cols=50 Identities=30% Similarity=0.554 Sum_probs=37.9
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
...|.||.+ .-+...++.|+.+.|..+-.. ..|+.|...+. ..+..||.-
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~-------------------------v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKN-------------------------VVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCC-------------------------ccCCCchhhhh--hHHHHHHHH
Confidence 478999999 667899999999999874321 24888876544 368888863
|
Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.25 Score=50.29 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=48.9
Q ss_pred EEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCC
Q 010913 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQP 380 (497)
Q Consensus 301 VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~ 380 (497)
|+|+.||.|.+++-+.++|..-|.++|+++.+++.-+.+. +. .++.+|+.++.. -..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-------------------~~-~~~~~Di~~~~~---~~~ 57 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-------------------GN-KVPFGDITKISP---SDI 57 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-------------------CC-CCCccChhhhhh---hhC
Confidence 6899999999999999999977889999998776555543 12 445678877641 112
Q ss_pred CceeEEEecc
Q 010913 381 HSVDVLVSEW 390 (497)
Q Consensus 381 ~~fDvIvs~~ 390 (497)
..+|+++..+
T Consensus 58 ~~~dvl~gg~ 67 (315)
T TIGR00675 58 PDFDILLGGF 67 (315)
T ss_pred CCcCEEEecC
Confidence 3589998654
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.1 Score=46.55 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=36.4
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
...+.+|.+||-+|||. |.++..+|++ |+.+|+++|.++.-++.|++
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 34567899999999875 6666777776 87679999999887776654
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.8 Score=40.17 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=82.7
Q ss_pred EEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CC-CCCCCCCCCCCCCCCCceEEEecch
Q 010913 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------ND-FWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 300 ~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~g-l~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
+|.-||+|+ | .++..++.+|. +|+.+|.++..++.+++.++. .| +.. ......-.++. +..++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~i~-~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQ-----EEADAALARIS-FTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHTEE-EESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchh-----hhhhhhhhhcc-cccCH
Confidence 466789987 3 35666777788 999999999999888876654 11 100 00000012344 23344
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCccccccCcccc
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMS 449 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~ 449 (497)
+.+ . ..|+|+=. .....+--..++.++.+++.|+.+|.-++.++....+.....+. ..+.| ++
T Consensus 74 ~~~-------~-~adlViEa----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p---~R~ig--~H 136 (180)
T PF02737_consen 74 EEA-------V-DADLVIEA----IPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRP---ERFIG--MH 136 (180)
T ss_dssp GGG-------C-TESEEEE-----S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTG---GGEEE--EE
T ss_pred HHH-------h-hhheehhh----ccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcC---ceEEE--Ee
Confidence 443 2 68988832 22344556789999999999999999887777655544331110 11222 11
Q ss_pred ccchHHHhhhcCCCeEeeeCCCcccccchhhhHhhhh
Q 010913 450 CVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSVRF 486 (497)
Q Consensus 450 ~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~~~ 486 (497)
-+ ......|.++++.... |++..+.....|
T Consensus 137 f~-----~P~~~~~lVEvv~~~~--T~~~~~~~~~~~ 166 (180)
T PF02737_consen 137 FF-----NPPHLMPLVEVVPGPK--TSPETVDRVRAL 166 (180)
T ss_dssp E------SSTTT--EEEEEE-TT--S-HHHHHHHHHH
T ss_pred cc-----cccccCceEEEeCCCC--CCHHHHHHHHHH
Confidence 11 1112346888877665 556666555544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF13821 DUF4187: Domain of unknown function (DUF4187) | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.14 Score=38.02 Aligned_cols=32 Identities=34% Similarity=0.765 Sum_probs=26.5
Q ss_pred ehhhhhHhhcccccccccCCccCCHHHHHHHHHHhccCcc
Q 010913 90 KLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKE 129 (497)
Q Consensus 90 KliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~~~~~~ 129 (497)
+||.|+|++- .-|+|||.++.+.+.|.. +||+
T Consensus 18 ~l~~YLR~~~--~YC~~Cg~~Y~d~~dL~~------~CPG 49 (55)
T PF13821_consen 18 KLLSYLREEH--NYCFWCGTKYDDEEDLER------NCPG 49 (55)
T ss_pred HHHHHHHhhC--ceeeeeCCccCCHHHHHh------CCCC
Confidence 6899999985 349999999999877753 7887
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.51 E-value=1 Score=46.91 Aligned_cols=46 Identities=33% Similarity=0.452 Sum_probs=34.8
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|+ |.++..+|++ |+..|++++.++.-.+.|++
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 4567899999999865 5566667776 88779999998876666643
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.33 Score=46.52 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=65.9
Q ss_pred CCCCC-CEEEEEcCCCCHhHHHHHHc--C------C--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 294 SLMKG-AVVMDIGCGTGILSLFAAQA--G------A--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 294 ~~~~~-~~VLDvGCGtG~ls~~la~~--G------~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
+++.| ++|+|+.+..|.+|..|++. . . .+|++||+-+ |.- + ..|
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-MaP----------I--------------~GV 91 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MAP----------I--------------EGV 91 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CCc----------c--------------Cce
Confidence 34555 68999999999999988875 1 1 1399999865 221 1 356
Q ss_pred EEEecchhhcccc----cCCCCCceeEEEecccccc--ccC--h----hhHHHHHHHHhccccCCcEEe
Q 010913 363 EVVQGMVEELGES----MQIQPHSVDVLVSEWMGYC--LLY--E----SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 363 ~~i~gd~~~l~~~----l~~~~~~fDvIvs~~~~~~--l~~--~----~~l~~vL~~~~r~LkpgG~li 419 (497)
.-+++|+...... ..|...+.|+|+|.....+ ++. + .-+.+.|.-...+|||||.++
T Consensus 92 ~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 92 IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred EEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 7788888664310 0245679999999752211 211 1 123455556679999999998
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.39 Score=46.09 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCCHhHHHHH--HcCCCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCceEEEecch-hhc
Q 010913 297 KGAVVMDIGCGTGILSLFAA--QAGASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQGMV-EEL 372 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la--~~G~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~i~~i~gd~-~~l 372 (497)
++.++||||.|.-.+=-.+. ..|. +.+|.|+++..++.|+.++..| ++. ..|++....= ..+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~-------------~~I~lr~qk~~~~i 143 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLE-------------RAIRLRRQKDSDAI 143 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchh-------------hheeEEeccCcccc
Confidence 56789999988754322222 2366 8999999999999999999888 662 4566554332 111
Q ss_pred ccccCCCCCceeEEEeccccc
Q 010913 373 GESMQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~ 393 (497)
-..+.-..+.||+++|++.+|
T Consensus 144 f~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 144 FNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred ccccccccceeeeEecCCCcc
Confidence 100112257899999998544
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.4 Score=42.56 Aligned_cols=96 Identities=29% Similarity=0.411 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-h
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-E 370 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-~ 370 (497)
.+.++.+||..|+|+ |.....+++. |. +|++++.++...+.+++. +.. ..+.....+. .
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~----g~~-------------~~~~~~~~~~~~ 192 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKEL----GAD-------------HVIDYKEEDLEE 192 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh----CCc-------------eeccCCcCCHHH
Confidence 346789999999996 6666667776 75 999999998766655432 210 0011100011 0
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+. ......+|+|+... + . ...+....+.|+++|.++
T Consensus 193 ~~~---~~~~~~~d~vi~~~-~----~----~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 193 ELR---LTGGGGADVVIDAV-G----G----PETLAQALRLLRPGGRIV 229 (271)
T ss_pred HHH---HhcCCCCCEEEECC-C----C----HHHHHHHHHhcccCCEEE
Confidence 000 02345799999542 1 1 134556678899999987
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.2 Score=46.24 Aligned_cols=47 Identities=26% Similarity=0.388 Sum_probs=36.6
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
...+.+|.+||-.|||. |.++..+|++ |+.+|+++|.++.-.+.|++
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34567899999999875 6667777777 87789999999987776654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.16 Score=52.66 Aligned_cols=65 Identities=25% Similarity=0.265 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+|..|-|+-||.|-+++.+++.|+ +|++-|.++.+++..+.+++.|.+. +.+|.+...|+..+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~------------~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD------------PSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc------------hhheeeecccHHHH
Confidence 36789999999999999999999996 9999999999999999999888763 23477777666554
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=1.3 Score=45.10 Aligned_cols=44 Identities=36% Similarity=0.504 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
...++.+||-.|||+ |.++..+|++ |+..|++++.++.-.+.++
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 456789999999865 5566667776 8866899999987776654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.6 Score=44.41 Aligned_cols=45 Identities=27% Similarity=0.214 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|. |.++..+|++ |+ +|++++.++.-.+.|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA 207 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 4567899999999864 5556667776 87 79999999876665554
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.2 Score=44.00 Aligned_cols=133 Identities=15% Similarity=0.131 Sum_probs=83.4
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+|+..+-+.+....... ...|+.+|||-=.-...+......+++=||..+ +++.-++.+...+.. .
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~-----------~ 130 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAE-----------P 130 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCC-----------C
Confidence 467776766666554322 346999999976555555322113777777755 565566666654421 1
Q ss_pred CCceEEEecchhh-ccccc---CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 359 AGKMEVVQGMVEE-LGESM---QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 359 ~~~i~~i~gd~~~-l~~~l---~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
..+.+++..|+.. +...+ .+.+...=+++++.+.+. +.+.....+|..+.+...||+.|+++..+.
T Consensus 131 ~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~Y-L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 131 PAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMY-LTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhc-CCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 3578888888752 11111 133445567887775443 355678889999998888999999765443
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.12 Score=30.48 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=19.7
Q ss_pred ceecCCCCCCCHHHHHHHhhhhc
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSH 70 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H 70 (497)
.|-+|+..|++...+..||+..|
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCcCCCCcCCcHHHHHHHHHhhC
Confidence 58999999999999999999877
|
... |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.58 Score=47.18 Aligned_cols=83 Identities=23% Similarity=0.189 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
++.+||-+|||. |.++..+|++ |+..|+++|.++..++.|... .. + +..+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~----------------i-----~~~~~-- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV----------------L-----DPEKD-- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc----------------c-----Chhhc--
Confidence 577899899875 7777777776 887788899887665544321 11 1 00000
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
....+|+|+-.. + . ...+....+.|+|||.++
T Consensus 197 ----~~~g~Dvvid~~-G----~----~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 197 ----PRRDYRAIYDAS-G----D----PSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred ----cCCCCCEEEECC-C----C----HHHHHHHHHhhhcCcEEE
Confidence 123589998432 1 1 234566678899999988
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.93 Score=45.51 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
-++.+|.-||.|. |..+..+|-- |+ .|+-+|+|..-+......+ ..++..+.....++.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f------------------~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF------------------GGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh------------------CceeEEEEcCHHHHH
Confidence 3446677788776 5554444443 66 9999999987665544443 357888888887775
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-.-.+.|++|... .+.....+.-+.+++.+.+|||+.|+
T Consensus 227 ----e~v~~aDlvIgaV---LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 227 ----EAVKKADLVIGAV---LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ----HHhhhccEEEEEE---EecCCCCceehhHHHHHhcCCCcEEE
Confidence 2356899999653 34455667778888999999999987
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.58 Score=40.33 Aligned_cols=81 Identities=28% Similarity=0.447 Sum_probs=51.9
Q ss_pred CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh----hcccccCCCCC
Q 010913 307 GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE----ELGESMQIQPH 381 (497)
Q Consensus 307 GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~----~l~~~l~~~~~ 381 (497)
|.|.++..+|++ | .+|+++|.++.-.+.+++. |. -.++..+-. .+.. ..+..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga----------------~~~~~~~~~~~~~~i~~--~~~~~ 57 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GA----------------DHVIDYSDDDFVEQIRE--LTGGR 57 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TE----------------SEEEETTTSSHHHHHHH--HTTTS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----cc----------------ccccccccccccccccc--ccccc
Confidence 458888888888 8 5999999999877766543 32 112222111 1110 02335
Q ss_pred ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 382 ~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+|+|+-.. + . ...+.....+|+|+|.++
T Consensus 58 ~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 86 (130)
T PF00107_consen 58 GVDVVIDCV-G----S----GDTLQEAIKLLRPGGRIV 86 (130)
T ss_dssp SEEEEEESS-S----S----HHHHHHHHHHEEEEEEEE
T ss_pred cceEEEEec-C----c----HHHHHHHHHHhccCCEEE
Confidence 899999432 1 1 346777788999999988
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.59 Score=46.95 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=39.1
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
....+.+|.+|.-+|+|. |.....-|++ ||++++|||+++.-.+.|++.
T Consensus 186 ~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 186 NTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 445678999999999997 5555555565 999999999999888777754
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.6 Score=44.29 Aligned_cols=90 Identities=26% Similarity=0.396 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc---hhh
Q 010913 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM---VEE 371 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd---~~~ 371 (497)
++.+||-.|||. |..+..+|++ |+.+|++++.++...+.+++. +. + .++... +..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~--------------~--~vi~~~~~~~~~ 224 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GA--------------D--ETVNLARDPLAA 224 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC--------------C--EEEcCCchhhhh
Confidence 788999998875 6666667776 776799999998777654432 22 0 111111 112
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ ....+.+|+|+... + . ...+....+.|+++|.++
T Consensus 225 ~----~~~~~~vd~vld~~-g----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 225 Y----AADKGDFDVVFEAS-G----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred h----hccCCCccEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 1 11234599999532 1 0 224566678999999988
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.99 Score=46.38 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHH
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIA 340 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~ 340 (497)
+-..|+|+|.|.|.++.+++-. |. .|.|||-|....+.|++.-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHHH
Confidence 3468999999999999999876 66 8999999988877776543
|
|
| >PHA00616 hypothetical protein | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.14 Score=36.00 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=26.1
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcch
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDF 74 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~ 74 (497)
|-.|+.|...|.....+..|+++.||=+-
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~ 29 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK 29 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence 35899999999999999999999999743
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=90.05 E-value=1.9 Score=43.98 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=59.2
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV- 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~- 369 (497)
..+.++.+||-.|+|. |..+..+|++ |+..|++++.++.....+++ .|.. ..+.....+.
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~-------------~~v~~~~~~~~ 224 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT-------------DIVDYKNGDVV 224 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-------------eEecCCCCCHH
Confidence 4567789999998763 5666677777 88789999999876665553 3320 0111111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. + .....+|+|+... .. ...+....+.|+++|+++
T Consensus 225 ~~i~~-~-~~~~~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 225 EQILK-L-TGGKGVDAVIIAG-----GG----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred HHHHH-H-hCCCCCcEEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 11110 0 1235699998432 11 235566778899999987
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.05 E-value=2.6 Score=42.99 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=65.8
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|--||+|+ | .++..++.+|. .|+.+|.++..++.++..+.. .++. ......++++.. ++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~i~~~~-~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLA--------PGASPARLRFVA-TI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--------hhhHHhhceecC-CH
Confidence 6788999996 2 35566677788 999999999887766554431 2210 000012344332 23
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
.+. -...|+|+-.. .....--..++.++.+.++|+.+|.-++..+..
T Consensus 78 ~~a-------v~~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~ 124 (321)
T PRK07066 78 EAC-------VADADFIQESA----PEREALKLELHERISRAAKPDAIIASSTSGLLP 124 (321)
T ss_pred HHH-------hcCCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEEECCCccCH
Confidence 221 24578888432 233344567788899999999877666665533
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.45 Score=46.85 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
-+-..|+.|+-+| -.-..++.++-.| +++|..||++++.+..-.+.++..|+ +++..+.-|+.+
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~--------------~~ie~~~~Dlr~ 212 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY--------------NNIEAFVFDLRN 212 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc--------------cchhheeehhcc
Confidence 3446789999999 5555666666554 46999999999999999999999987 568888888776
Q ss_pred cccccCCC---CCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 372 LGESMQIQ---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 372 l~~~l~~~---~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
. +| ..+||+++..+. .....+..++..=...||--
T Consensus 213 p-----lpe~~~~kFDvfiTDPp----eTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 213 P-----LPEDLKRKFDVFITDPP----ETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred c-----ChHHHHhhCCeeecCch----hhHHHHHHHHhccHHHhcCC
Confidence 3 44 468999997652 12234455555544556544
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=89.26 E-value=2.2 Score=44.79 Aligned_cols=104 Identities=23% Similarity=0.241 Sum_probs=60.5
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g--- 367 (497)
..+.++.+||-.|+|. |.++..+|++ |+..|+++|.++.-++.|++. |. . .+...
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga---------------~-~v~~~~~~ 240 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC---------------E-TVDLSKDA 240 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC---------------e-EEecCCcc
Confidence 3456788888888875 6666777776 887778889888766666543 32 1 11111
Q ss_pred chh-hcccccCCCCCceeEEEeccccccc------cChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MVE-ELGESMQIQPHSVDVLVSEWMGYCL------LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~~-~l~~~l~~~~~~fDvIvs~~~~~~l------~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. .+.. + .....+|+|+-.. +.-- .........+....+++++||.++
T Consensus 241 ~~~~~v~~-~-~~~~g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~ 296 (393)
T TIGR02819 241 TLPEQIEQ-I-LGEPEVDCAVDCV-GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIG 296 (393)
T ss_pred cHHHHHHH-H-cCCCCCcEEEECC-CCccccccccccccchHHHHHHHHHHhhCCCEEE
Confidence 111 1110 0 1234689998532 2100 001122346777788999999998
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.1 Score=44.18 Aligned_cols=47 Identities=30% Similarity=0.497 Sum_probs=34.9
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
...+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-.+.+++
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 34567899999998764 5556666776 87789999999877766643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.18 Score=47.01 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=57.4
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
....|-||.+.|++..-+=.|..+.|.--|...+.+ |-|.|++ ||. -|+++|.+..+-..||..+
T Consensus 105 h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veR-G~dMy~C--lvE------------gCt~KFkT~r~RkdH~I~~ 169 (253)
T KOG4173|consen 105 HGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVER-GQDMYQC--LVE------------GCTEKFKTSRDRKDHMIRM 169 (253)
T ss_pred ccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHc-CccHHHH--HHH------------hhhhhhhhhhhhhhHHHHh
Confidence 456999999999999999999999999988887755 5788886 332 3888998888888999988
Q ss_pred ccCcc
Q 010913 125 YNLKE 129 (497)
Q Consensus 125 ~~~~~ 129 (497)
...+.
T Consensus 170 Hk~Pa 174 (253)
T KOG4173|consen 170 HKYPA 174 (253)
T ss_pred ccCCc
Confidence 66664
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.54 Score=47.11 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=42.5
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccc-----c--------ChhhHHHHHHHHhccccCCcEEecc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL-----L--------YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l-----~--------~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
...+++++|..++.. .++.++||+|++++..... . +...+..++.++.++|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELK--KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHH--hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 455789999988632 3567899999998642210 0 1123467889999999999999853
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.55 E-value=2 Score=43.27 Aligned_cols=100 Identities=25% Similarity=0.356 Sum_probs=59.1
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
....+.++.+||-+|+|. |..+..+|++ |+..|++++.++.....+++. |. . .++..+
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~--------------~--~~~~~~ 212 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GA--------------T--ETVDPS 212 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CC--------------e--EEecCC
Confidence 344567889999998753 5566667776 775599999998877665432 32 1 122111
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-.............+|+|+... + . ...+....+.|+++|.++
T Consensus 213 ~~~~~~~~~~~~~~vd~v~~~~-~----~----~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 213 REDPEAQKEDNPYGFDVVIEAT-G----V----PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred CCCHHHHHHhcCCCCcEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 1110000012345799999532 1 1 235566678899999987
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.32 Score=28.76 Aligned_cols=21 Identities=33% Similarity=0.811 Sum_probs=19.0
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 010913 103 RCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.|..|++.|.+...|..||..
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHhH
Confidence 489999999999999999974
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A .... |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=88.36 E-value=2 Score=36.28 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=51.5
Q ss_pred CCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCc
Q 010913 306 CGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHS 382 (497)
Q Consensus 306 CGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~ 382 (497)
||.|.++..+++. +...|+.+|.++..++.+++. .+.++.||..+...-....-.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------------------~~~~i~gd~~~~~~l~~a~i~~ 62 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------------------GVEVIYGDATDPEVLERAGIEK 62 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------------------TSEEEES-TTSHHHHHHTTGGC
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------------------ccccccccchhhhHHhhcCccc
Confidence 4556666665554 334899999999877655543 3578999987654211234467
Q ss_pred eeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 383 VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 383 fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.|++.. ........+....|-+.|...++
T Consensus 63 a~~vv~~~------~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 63 ADAVVILT------DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp ESEEEEES------SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred cCEEEEcc------CCHHHHHHHHHHHHHHCCCCeEE
Confidence 88888532 12223333444456677777766
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.3 Score=45.73 Aligned_cols=114 Identities=21% Similarity=0.217 Sum_probs=75.8
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHH-------hCCCCCCCCCCCCCCCCCC
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAK-------DNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~-------~~gl~~~~~~~~~~~~~~~ 360 (497)
+...+.+.++....|+|.|.|.+..++|.. |++.-+|+++.......|..+.. ..|- ...
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk------------~~~ 251 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK------------KPN 251 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC------------CcC
Confidence 444557788999999999999998888776 67788899888666555543322 2221 135
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+..++|+..+..- +..-....++|+++. +.+. +++.-=+.++..-+++|-+++
T Consensus 252 ~~~~i~gsf~~~~~-v~eI~~eatvi~vNN---~~Fd-p~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 252 KIETIHGSFLDPKR-VTEIQTEATVIFVNN---VAFD-PELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred ceeecccccCCHHH-HHHHhhcceEEEEec---ccCC-HHHHHhhHHHHhhCCCcceEe
Confidence 67888888755421 111245688999765 3333 344434447888899999988
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=2.2 Score=43.87 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=60.0
Q ss_pred hCCCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|+ | .|.++..+|++ |+ +|++++.++.-.+.+++. .|.. ..+.....
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~-------------~vi~~~~~ 214 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFD-------------EAFNYKEE 214 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCC-------------EEEECCCc
Confidence 3445678999999998 3 57778888887 87 799999988766555422 3320 01111111
Q ss_pred -chhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 -MVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 -d~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+... +. ....+.+|+|+-.. + ...+....+.|++||.++
T Consensus 215 ~~~~~~i~---~~~~~gvD~v~d~v-G---------~~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 215 PDLDAALK---RYFPEGIDIYFDNV-G---------GDMLDAALLNMKIHGRIA 255 (348)
T ss_pred ccHHHHHH---HHCCCCcEEEEECC-C---------HHHHHHHHHHhccCCEEE
Confidence 2211 11 01134699998432 1 124566678899999987
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.20 E-value=3 Score=43.96 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=28.5
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKM 332 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~ 332 (497)
..+|++|+-+|+|. |......++. |+ +|+++|.++.-
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r 230 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIR 230 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhh
Confidence 36899999999997 5555555555 77 89999998853
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.91 E-value=2.6 Score=43.51 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|. |.++..+|++ |+.+|++++.++.-.+.|++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567899999998764 5566667776 87789999999877766643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.8 Score=46.23 Aligned_cols=96 Identities=22% Similarity=0.337 Sum_probs=55.9
Q ss_pred HHHHHHhCCCC-CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 285 YRQAILENPSL-MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 285 y~~~i~~~~~~-~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
..+.|++...+ ..|++|+-+|+|. |......++. |+ +|+++|.++.-...|. ..|+
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~----~~G~---------------- 298 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQAL----MEGY---------------- 298 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHH----hcCC----------------
Confidence 34445544333 6799999999996 5444444444 88 8999999985332222 1232
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++ ++.+. + ...|+|+... + ....+.......+||||+|+
T Consensus 299 -~vv--~leEa-----l--~~ADVVI~tT-G-------t~~vI~~e~L~~MK~GAiLi 338 (477)
T PLN02494 299 -QVL--TLEDV-----V--SEADIFVTTT-G-------NKDIIMVDHMRKMKNNAIVC 338 (477)
T ss_pred -eec--cHHHH-----H--hhCCEEEECC-C-------CccchHHHHHhcCCCCCEEE
Confidence 111 23332 1 2479988532 1 11112355667899999988
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.39 Score=43.57 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE-EEecchh-hcccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME-VVQGMVE-ELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~-~i~gd~~-~l~~~ 375 (497)
|++++-+|...=..-..+.+.|+++|+.|+.++--++ .+. .+++. +...+.. ++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~--~~~-------------------~dr~ssi~p~df~~~~~-- 58 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQ--EEF-------------------RDRLSSILPVDFAKNWQ-- 58 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccC--ccc-------------------ccccccccHHHHHHHHH--
Confidence 6788999999888877777889999999998763221 110 12222 2222221 221
Q ss_pred cCCCCCceeEEEeccc--cccc-------cChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWM--GYCL-------LYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~--~~~l-------~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
...++||.+.|... ...| -...+ ...+..+.++|||||.|++
T Consensus 59 --~y~~~fD~~as~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 59 --KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred --HhhccchhhheechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEE
Confidence 23567999876321 0111 11222 3466778899999999983
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.64 E-value=3.8 Score=42.63 Aligned_cols=99 Identities=25% Similarity=0.318 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEec--
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQG-- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~g-- 367 (497)
..+.+|.+||-.|+|. |..++.+|++ |+.+|++++.++.-...+++ .|. +.+ .....
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~--------------~~~v~~~~~~~ 260 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGA--------------DYVFNPTKMRD 260 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC--------------CEEEccccccc
Confidence 4567888888888754 4455556666 87689999998864444433 343 111 11100
Q ss_pred -c-hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 -M-VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 -d-~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ ...+.. + .....+|+|+... + .....+....+.|+++|+++
T Consensus 261 ~~~~~~v~~-~-~~g~gvDvvld~~-g-------~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 261 CLSGEKVME-V-TKGWGADIQVEAA-G-------APPATIPQMEKSIAINGKIV 304 (384)
T ss_pred ccHHHHHHH-h-cCCCCCCEEEECC-C-------CcHHHHHHHHHHHHcCCEEE
Confidence 1 111110 0 2345699998531 1 11234566678899999988
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=87.43 E-value=2.6 Score=41.29 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+.++.+||-.|||. |..+..+|++ |+.+|++++.++.....+++. |.. +.+ +... .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~-------------~~~--~~~~-~ 152 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA-------------DPV--AADT-A 152 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC-------------ccc--cccc-h
Confidence 4567889999998875 6666777776 874599999998876655543 210 111 1000 0
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. .....+|+|+... .. ...+....+.|+++|.++
T Consensus 153 ~~-----~~~~~~d~vl~~~-----~~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 153 DE-----IGGRGADVVIEAS-----GS----PSALETALRLLRDRGRVV 187 (277)
T ss_pred hh-----hcCCCCCEEEEcc-----CC----hHHHHHHHHHhcCCcEEE
Confidence 11 1244689998531 11 224566678899999987
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.38 E-value=2.8 Score=43.25 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.6
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEK 331 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~ 331 (497)
..+|.+||-.|+|. |.++..+|++ |+ +|++++.++.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~ 218 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSN 218 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 35788898899875 6677777777 87 7888888764
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.5 Score=44.74 Aligned_cols=51 Identities=27% Similarity=0.488 Sum_probs=41.3
Q ss_pred HHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 289 ILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
++......+|.+|.-+|||. |..++.-|+. |+.+++|||+++.-++.|++.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 34455678999999999996 7777776666 999999999999888877764
|
|
| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.24 Score=29.34 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.4
Q ss_pred ceecCCCCCCCHHHHHHHhhhhc
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSH 70 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H 70 (497)
.|--|++.|++...+..||+. |
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCccCCHHHHHHHHhH-C
Confidence 688999999999999999987 5
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A .... |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.13 E-value=4.3 Score=41.09 Aligned_cols=98 Identities=24% Similarity=0.401 Sum_probs=56.6
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...++.+||-.|+|. |..+..+|++ |...|++++.++.....+++. |.. ..+.....+..+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~-------------~vi~~~~~~~~~ 226 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT-------------DIINPKNGDIVE 226 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc-------------EEEcCCcchHHH
Confidence 456788998887753 6666777776 755899998887666555432 210 011111111111
Q ss_pred -cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 -LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 -l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. ..+...+|+|+... + . ...+....+.|+++|.++
T Consensus 227 ~i~~--~~~~~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 227 QILE--LTGGRGVDCVIEAV-G----F----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred HHHH--HcCCCCCcEEEEcc-C----C----HHHHHHHHHHhhcCCEEE
Confidence 110 02335799998532 1 1 135666678999999987
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=3.7 Score=43.57 Aligned_cols=84 Identities=29% Similarity=0.354 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..|++|+-+|+|. |......++. |+ +|+.+|.++.....|. ..|. .+. ++.+.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~----~~G~-----------------~v~--~l~ea- 264 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAA----MDGF-----------------RVM--TMEEA- 264 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHH----hcCC-----------------Eec--CHHHH-
Confidence 5899999999986 4444444444 88 8999999985432221 1232 211 23332
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHH-HHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF-ARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~-~~~r~LkpgG~li 419 (497)
+ ..+|+|+... + . ..++. .....+|+|++++
T Consensus 265 ----l--~~aDVVI~aT-G-------~-~~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 265 ----A--ELGDIFVTAT-G-------N-KDVITAEHMEAMKDGAILA 296 (425)
T ss_pred ----H--hCCCEEEECC-C-------C-HHHHHHHHHhcCCCCCEEE
Confidence 1 2589998642 1 1 22443 5678899999987
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.6 Score=44.72 Aligned_cols=73 Identities=27% Similarity=0.267 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
..+++|+-||-|.+++-+..+|..-+.++|+++..++.-+.+. ....++.+|+..+... .
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~-------------------~~~~~~~~di~~~~~~-~ 62 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANF-------------------PHGDIILGDIKELDGE-A 62 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhC-------------------CCCceeechHhhcChh-h
Confidence 3579999999999999999999989999999997665444442 1145666777765410 1
Q ss_pred CCCCceeEEEecc
Q 010913 378 IQPHSVDVLVSEW 390 (497)
Q Consensus 378 ~~~~~fDvIvs~~ 390 (497)
++...+|+|+..+
T Consensus 63 ~~~~~~DvligGp 75 (328)
T COG0270 63 LRKSDVDVLIGGP 75 (328)
T ss_pred ccccCCCEEEeCC
Confidence 1112789999754
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.98 E-value=2.5 Score=42.33 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..|++||--|.|.|. +++.+|++|+ +++-.|++........+.+++.| ++..+..|+.+.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g----------------~~~~y~cdis~~ 98 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG----------------EAKAYTCDISDR 98 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC----------------ceeEEEecCCCH
Confidence 468999999999996 6888999999 89999999988877666666554 567777777654
Q ss_pred cc------ccCCCCCceeEEEecc
Q 010913 373 GE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~------~l~~~~~~fDvIvs~~ 390 (497)
.+ .+.-..+.+|++|.+.
T Consensus 99 eei~~~a~~Vk~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 99 EEIYRLAKKVKKEVGDVDILVNNA 122 (300)
T ss_pred HHHHHHHHHHHHhcCCceEEEecc
Confidence 32 1223457899999874
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=86.89 E-value=4.8 Score=41.19 Aligned_cols=42 Identities=33% Similarity=0.499 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.++.+||-.|+|. |..+..+|++ |+++|++++.++.-...++
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 219 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR 219 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 4788898888753 4556666766 7778999998887655443
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=86.82 E-value=3.8 Score=43.06 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=36.1
Q ss_pred CCCCCCCEEEEEc-CC-CCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIG-CG-TGILSLFAAQA---GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 293 ~~~~~~~~VLDvG-CG-tG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~ 339 (497)
..+.+|.+||-+| +| .|.++..+|++ |+.+|+++|.++.-++.|++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3456788999997 45 47777777876 446899999999888887764
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=3.4 Score=41.82 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=33.7
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHH-c-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQ-A-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~-~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|. |..+..+|+ . |+..|++++.++.-.+.+++
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 4567889999999764 445566676 3 88789999998877665554
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=86.23 E-value=4.2 Score=41.61 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|||. |.++..+|++ |+ +|++++.++.-++.|++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567899999999965 6677777777 87 79999999987776654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=6.3 Score=37.45 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
++++||-.|++.|+ +...+++.|+ +|++++.++.-...+.+..... .++.++.+|+.+..
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY----------------GNIHYVVGDVSSTE 66 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----------------CCeEEEECCCCCHH
Confidence 57899999987654 3444555688 8999999886555443333221 25778888876532
Q ss_pred ccc------CCCCCceeEEEecc
Q 010913 374 ESM------QIQPHSVDVLVSEW 390 (497)
Q Consensus 374 ~~l------~~~~~~fDvIvs~~ 390 (497)
.-. ...-+.+|.|+...
T Consensus 67 ~~~~~~~~~~~~~~~id~ii~~a 89 (238)
T PRK05786 67 SARNVIEKAAKVLNAIDGLVVTV 89 (238)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcC
Confidence 100 00123578887654
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.03 E-value=2.4 Score=47.76 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=38.1
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhH-HHHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESML-SSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l-~~vL~~~~r~LkpgG~li 419 (497)
+++++.||+.+.- +-....||+++...++-. ..+.+. ..++..+.++++|||+++
T Consensus 148 ~l~l~~gd~~~~~---~~~~~~~d~~~lD~FsP~-~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 148 TLDLWFGDANELL---PQLDARADAWFLDGFAPA-KNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred EEEEEecCHHHHH---HhccccccEEEeCCCCCc-cChhhccHHHHHHHHHHhCCCCEEE
Confidence 4568889998753 212356999997653221 123332 578999999999999998
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=86.03 E-value=4.5 Score=40.51 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=58.9
Q ss_pred hCCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|+ |.|.++..+|++ |+ +|+++..++.-.+.+++ .|.. ..+.....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~-------------~vi~~~~~ 198 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD-------------AVFNYKTV 198 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC-------------EEEeCCCc
Confidence 3445678999999985 346677777877 87 79999998876665543 3430 01111111
Q ss_pred ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+. ......+|+|+... + ...+....+.|+++|.++
T Consensus 199 ~~~~~v~---~~~~~gvd~vld~~-g---------~~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 199 SLEEALK---EAAPDGIDCYFDNV-G---------GEFSSTVLSHMNDFGRVA 238 (329)
T ss_pred cHHHHHH---HHCCCCcEEEEECC-C---------HHHHHHHHHhhccCCEEE
Confidence 11 1111 11235699998432 1 124566678899999987
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.8 Score=41.33 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHH
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
...+-++.|-.||.|.+.-.+.-. ....|+|-|+++.+++.|++|+.
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 345679999999999875444332 23689999999999999998875
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.86 E-value=3.6 Score=42.38 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=58.3
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g--- 367 (497)
..+.++.+||-.|+|. |.++..+|++ |+..|++++.++.-...+++ .|. + .++..
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~--------------~--~~i~~~~~ 241 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA--------------T--HVINPKEE 241 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC--------------c--EEecCCCc
Confidence 3456788999998764 6667777777 88789999999876665543 222 1 11111
Q ss_pred ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. +.+.. .....+|+|+... + . ...+....+.|+++|.++
T Consensus 242 ~~~~~v~~---~~~~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 242 DLVAAIRE---ITGGGVDYALDTT-G----V----PAVIEQAVDALAPRGTLA 282 (365)
T ss_pred CHHHHHHH---HhCCCCcEEEECC-C----C----cHHHHHHHHHhccCCEEE
Confidence 11 11110 1135699998531 1 1 124566678899999988
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.8 Score=41.34 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=54.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.|.+........-|.+||.|.|+++..+..+|+++...|+.+...+.-.+-..... +.++.+
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa---------------~~~~~I 102 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA---------------PGKLRI 102 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC---------------CcceEE
Confidence 44556666666677889999999999999999999999999999988876544443322 236677
Q ss_pred Eecchhhc
Q 010913 365 VQGMVEEL 372 (497)
Q Consensus 365 i~gd~~~l 372 (497)
.++|+..+
T Consensus 103 Hh~D~LR~ 110 (326)
T KOG0821|consen 103 HHGDVLRF 110 (326)
T ss_pred ecccccee
Confidence 77776543
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=85.59 E-value=4.8 Score=40.81 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=56.7
Q ss_pred CCCCC--CEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEec
Q 010913 294 SLMKG--AVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQG 367 (497)
Q Consensus 294 ~~~~~--~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~g 367 (497)
.+.++ .+||-.|+ |.|.++..+|++ |+.+|++++.++.-.+.+++. .|. +.+ ..-..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa--------------~~vi~~~~~ 211 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGF--------------DAAINYKTD 211 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCC--------------cEEEECCCC
Confidence 34444 89999986 356777778887 876799999988766555442 332 111 11111
Q ss_pred chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++. .+. ......+|+|+... + . . .+....++|+++|.++
T Consensus 212 ~~~~~i~---~~~~~gvd~vid~~-g----~----~-~~~~~~~~l~~~G~iv 251 (345)
T cd08293 212 NVAERLR---ELCPEGVDVYFDNV-G----G----E-ISDTVISQMNENSHII 251 (345)
T ss_pred CHHHHHH---HHCCCCceEEEECC-C----c----H-HHHHHHHHhccCCEEE
Confidence 111 111 11235699998532 1 1 1 2355678899999988
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A | Back alignment and domain information |
|---|
Probab=85.14 E-value=0.79 Score=26.84 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=17.2
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 010913 103 RCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.|..|+.+|.+..++..||..
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHHh
Confidence 488999999999999999975
|
... |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.12 E-value=15 Score=35.90 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc----CC-CEEEEEeCCHHHHHHH-HHHHHh-CCCCCCCCCCCCCCCCCCceEEEec
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA----GA-SRVIAVEASEKMAAVA-TQIAKD-NDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~----G~-~~V~gvD~S~~~i~~A-~~~~~~-~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
+..+...+|+|.|+..-+..+..+ |. .+.+.||+|+.++... +..... .++ .|.-+.+
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l---------------~v~~l~~ 140 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL---------------EVNALCG 140 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC---------------eEeehhh
Confidence 345789999999998655554443 32 4899999999888643 333333 233 5667777
Q ss_pred chhhcccccCCCCCceeEEEeccccccc--cChhhHHHHHHHHhccccCCcEEeccC
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l--~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+..-.. ++...--+++- +|..+ +.+..-..+|.++...|+||-.+++.+
T Consensus 141 ~~~~~La~--~~~~~~Rl~~f--lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 141 DYELALAE--LPRGGRRLFVF--LGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred hHHHHHhc--ccCCCeEEEEE--ecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 77543211 22233233321 22222 345566789999999999999988543
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=85.08 E-value=0.47 Score=40.27 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=27.1
Q ss_pred ceeEEEeccc--cccc-cChhhHHHHHHHHhccccCCcEEe
Q 010913 382 SVDVLVSEWM--GYCL-LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 382 ~fDvIvs~~~--~~~l-~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+||+|+|-.+ -.+| .....+..++..+.+.|+|||.++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li 41 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI 41 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE
Confidence 4899998432 1112 124557889999999999999998
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=84.99 E-value=7.2 Score=39.15 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 293 ~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
..+.++.+||-+||| .|..+..+|++ |. +|++++.++...+.++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELAR 203 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 356778899999987 57677777777 77 8999999988776653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=84.89 E-value=4.5 Score=46.00 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=72.9
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|.-||+|+ +.++..+|.+|. .|+.+|.++..++.+.+.+.. .|... .. .......+|++. .+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~---~~-~~~~~~~~i~~~-~~~ 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKID---GA-KMAGVLSSIRPT-LDY 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---hh-hHHHHHhCeEEe-CCH
Confidence 5799999998 346667788898 999999999999877765532 11100 00 000001234332 222
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG 431 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~ 431 (497)
.. -...|+|+=. ......--..++.++.++++|+.+|.-++.++....+.
T Consensus 388 ~~--------~~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la 437 (715)
T PRK11730 388 AG--------FERVDVVVEA----VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLA 437 (715)
T ss_pred HH--------hcCCCEEEec----ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence 22 2457888832 23444556789999999999999998887776554443
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=84.80 E-value=6.6 Score=39.54 Aligned_cols=98 Identities=19% Similarity=0.150 Sum_probs=59.1
Q ss_pred hCCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEe
Q 010913 291 ENPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQ 366 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~ 366 (497)
....+.+|.+||-.|+ |.|.++..+|+. |+ +|++++.++.-.+.+++ .|. +.+ ....
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa--------------~~vi~~~~ 192 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGF--------------DVAFNYKT 192 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC--------------CEEEeccc
Confidence 3445678999999985 357777778887 87 89999999876665543 343 111 1111
Q ss_pred -cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 367 -GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 -gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+...... ....+.+|+|+-.. + . ..+....++|+++|+++
T Consensus 193 ~~~~~~~~~--~~~~~gvdvv~d~~-G----~-----~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 193 VKSLEETLK--KASPDGYDCYFDNV-G----G-----EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred cccHHHHHH--HhCCCCeEEEEECC-C----H-----HHHHHHHHHhCcCcEEE
Confidence 01111100 11234699998432 1 1 13456678899999998
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.73 E-value=2.1 Score=44.58 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHH
Q 010913 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVA 336 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A 336 (497)
++.+|+-+|+|. |..+...++. |+ +|+++|.++.-++.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQL 206 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH
Confidence 567799999984 5555555554 88 799999998654433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=84.61 E-value=5.5 Score=36.60 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=61.5
Q ss_pred EEcCCCCHhHHHHHHc-C-CCEEEEEeCCHH--HHHHH---HHHHHhCCCCCCCCCCCCCCCCCCceE-EEecchhhccc
Q 010913 303 DIGCGTGILSLFAAQA-G-ASRVIAVEASEK--MAAVA---TQIAKDNDFWWDRPQSEGNINNAGKME-VVQGMVEELGE 374 (497)
Q Consensus 303 DvGCGtG~ls~~la~~-G-~~~V~gvD~S~~--~i~~A---~~~~~~~gl~~~~~~~~~~~~~~~~i~-~i~gd~~~l~~ 374 (497)
=||=|.=.+|+.|+++ + ...++|.-.... ..+.. ..++.... ...+. +..-|+..+..
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~--------------~~g~~V~~~VDat~l~~ 67 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR--------------ELGVTVLHGVDATKLHK 67 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh--------------hcCCccccCCCCCcccc
Confidence 3566666677778877 5 557777655533 22221 12222211 11222 33456666654
Q ss_pred ccCCCCCceeEEEeccccccc----------cChhhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCL----------LYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l----------~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
........||.|+-+.+...- .+...+..++..+.++|+++|.+.+..
T Consensus 68 ~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 68 HFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred cccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 444467899999966533220 122356788899999999999987443
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=1.4 Score=42.59 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=39.2
Q ss_pred EEEecchhhcccccCCCCCceeEEEecccccccc-------------ChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-------------YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-------------~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++||..++-. .++++++|+|+..+. |.+. +..-...++.++.|+|||||.++.
T Consensus 3 ~l~~gD~le~l~--~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMA--RFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHH--hCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 678888876532 367899999999863 3211 112245788999999999999873
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=4.8 Score=43.24 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~ 339 (497)
.-+++|+-||.|.+++.+-.+|...|.++|+++.+.+.-+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHH
Confidence 459999999999999999999988889999998665544433
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.33 E-value=3.6 Score=40.28 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-C--------CCEEEEEeCCHHHHHHHHHHHH
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-G--------ASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G--------~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
.+-+|+++|+|+|.++.-+.+. . ..+++-||+|+.+.+..++.+.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3479999999999998877764 1 1389999999998877666653
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.32 E-value=5.6 Score=40.40 Aligned_cols=99 Identities=22% Similarity=0.358 Sum_probs=58.9
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEecc
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQGM 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~gd 368 (497)
...+.++.+||-.|+|. |.++..+|++ |+..|+++..++.....+++. |. +.+ .....+
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~--------------~~vi~~~~~~ 218 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GA--------------THTVNVRTED 218 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC--------------cEEecccccc
Confidence 44567888998888765 5666677776 875599999888776655442 22 111 111111
Q ss_pred ----hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 ----VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ----~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...+.. ......+|+|+... + . ...+....+.|+++|.++
T Consensus 219 ~~~~~~~~~~--~~~~~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 219 TPESAEKIAE--LLGGKGPDVVIECT-G----A----ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred chhHHHHHHH--HhCCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 111110 12345699999532 1 1 125566678999999987
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.30 E-value=2.5 Score=41.46 Aligned_cols=89 Identities=21% Similarity=0.314 Sum_probs=65.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+.+|...+|+|+-.|..+..+.+++- .|++||..+ |. .... . .+.|+....|...+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma---~sL~-d----------------tg~v~h~r~DGfk~~ 265 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MA---QSLM-D----------------TGQVTHLREDGFKFR 265 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccch-hh---hhhh-c----------------ccceeeeeccCcccc
Confidence 457899999999999999999999988 999999876 32 2221 1 257888888888874
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
| ....+|-.||..+ +.+..+-..+..+|..|
T Consensus 266 ---P-~r~~idWmVCDmV-------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 266 ---P-TRSNIDWMVCDMV-------EKPARVAALIAKWLVNG 296 (358)
T ss_pred ---c-CCCCCceEEeehh-------cCcHHHHHHHHHHHHcc
Confidence 3 3678999998742 34455555566777665
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.21 E-value=8.1 Score=39.36 Aligned_cols=99 Identities=25% Similarity=0.316 Sum_probs=57.3
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV- 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~- 369 (497)
..+.+|.+||-.|+|. |.++..+|+. |+.+|++++.++...+.+++ .|.. ..+.....+.
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~-------------~~i~~~~~~~~ 230 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT-------------IVLDPTEVDVV 230 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-------------EEECCCccCHH
Confidence 4556788999998653 4555666666 87789999999887766643 2320 0111111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. ......+|+|+-.. + . ...+....+.|+++|.++
T Consensus 231 ~~l~~--~~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 231 AEVRK--LTGGGGVDVSFDCA-G----V----QATLDTAIDALRPRGTAV 269 (351)
T ss_pred HHHHH--HhCCCCCCEEEECC-C----C----HHHHHHHHHhccCCCEEE
Confidence 11110 01234599998532 1 1 124566678899999987
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.95 E-value=5 Score=40.83 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc----h
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM----V 369 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd----~ 369 (497)
.++.+||-.|+|. |.++..+|++ |+++|++++.++.....+.+ .|. + .++... .
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~--------------~--~~~~~~~~~~~ 233 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGA--------------D--VVVNGSDPDAA 233 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC--------------c--EEecCCCccHH
Confidence 4688888888763 5666667777 88789999998877665543 232 0 111111 1
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+. ....+.+|+++... + . ...+....+.|+++|.++
T Consensus 234 ~~~~---~~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 234 KRII---KAAGGGVDAVIDFV-N----N----SATASLAFDILAKGGKLV 271 (350)
T ss_pred HHHH---HHhCCCCcEEEECC-C----C----HHHHHHHHHHhhcCCeEE
Confidence 1111 01122689998532 1 1 224666678899999987
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=83.71 E-value=3.3 Score=42.01 Aligned_cols=99 Identities=25% Similarity=0.348 Sum_probs=57.1
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
....++.+||-.|+|. |..+..+|++ |+..|+++..++...+.+++ .|.. ..+........
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~-------------~~~~~~~~~~~ 217 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD-------------DTINPKEEDVE 217 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-------------EEecCccccHH
Confidence 3456788999998765 6666667776 87559999988876655432 2320 01111100111
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+.. ..+...+|+|+... .. ...+..+.+.|+++|.++
T Consensus 218 ~~~~--~~~~~~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v 255 (343)
T cd08236 218 KVRE--LTEGRGADLVIEAA-----GS----PATIEQALALARPGGKVV 255 (343)
T ss_pred HHHH--HhCCCCCCEEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 1110 02234599998531 11 234566678899999987
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.62 E-value=7.8 Score=39.85 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAA 334 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~ 334 (497)
..+|.+||-.|+|. |.++..+|++ |+ +|++++.++....
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~ 218 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKRE 218 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHH
Confidence 35788888888764 6666777777 77 7888888775443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.57 E-value=5.4 Score=39.68 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=52.3
Q ss_pred EEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 300 VVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 300 ~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+|.-||+|. |.++..++++|. +|+++|.++..++.+.+. |. +.....+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~----------------~~~~~~~~~~------ 54 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL----------------VDEASTDLSL------ 54 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC----------------cccccCCHhH------
Confidence 467788886 446666777777 899999998776655432 22 1111111111
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
....|+|+... .......++..+...++|+.+ +.+..
T Consensus 55 --~~~aDlVilav------p~~~~~~~~~~l~~~l~~~~i-i~d~~ 91 (279)
T PRK07417 55 --LKDCDLVILAL------PIGLLLPPSEQLIPALPPEAI-VTDVG 91 (279)
T ss_pred --hcCCCEEEEcC------CHHHHHHHHHHHHHhCCCCcE-EEeCc
Confidence 23579888432 234445677778788877654 44443
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.92 E-value=7.9 Score=40.26 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHH
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEK 331 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~ 331 (497)
.+|.+||-.|+|. |.++..+|++ |+ +|++++.++.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~ 213 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSE 213 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChH
Confidence 4788999999874 6667777777 88 7999998754
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=82.90 E-value=6.2 Score=40.01 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=59.6
Q ss_pred hCCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|+ |.|.++..+|++ |+ +|+++..++.-.+.+++. .|.. ..+..-..
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~-------------~vi~~~~~ 207 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFD-------------DAFNYKEE 207 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCc-------------eeEEcCCc
Confidence 3445678999999997 346677777777 88 799999888766655542 2320 01111111
Q ss_pred -chhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 -MVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 -d~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+ +. ......+|+|+-.. + ...+....++|+++|.++
T Consensus 208 ~~~~~~i~---~~~~~gvd~v~d~~-g---------~~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 208 PDLDAALK---RYFPNGIDIYFDNV-G---------GKMLDAVLLNMNLHGRIA 248 (338)
T ss_pred ccHHHHHH---HhCCCCcEEEEECC-C---------HHHHHHHHHHhccCcEEE
Confidence 2111 11 01125799998432 1 134556678999999987
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.75 E-value=0.32 Score=43.85 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=35.3
Q ss_pred CCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 377 QIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+|.++++|+|+++- ++.| .....++++.++|.|||||.|-+..+..
T Consensus 42 ~F~dns~d~iyaeH---vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 42 MFEDNSVDAIYAEH---VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cCCCcchHHHHHHH---HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 58899999999654 4443 3456788999999999999998655543
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=5.8 Score=39.52 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHH-HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEK-MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~-~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+.. ........+...+ .++.++.+|+.+
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~~ 107 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG---------------VKCLLIPGDVSD 107 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC---------------CeEEEEEccCCC
Confidence 467899999987775 4555666788 8888887642 2222233333332 367788888755
Q ss_pred cccccC-C-----CCCceeEEEecc
Q 010913 372 LGESMQ-I-----QPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~l~-~-----~~~~fDvIvs~~ 390 (497)
...... + ..+.+|+||.+.
T Consensus 108 ~~~~~~~~~~i~~~~~~iD~lI~~A 132 (290)
T PRK06701 108 EAFCKDAVEETVRELGRLDILVNNA 132 (290)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 321000 0 114689888653
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=82.51 E-value=2.5 Score=42.73 Aligned_cols=98 Identities=23% Similarity=0.359 Sum_probs=58.3
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV- 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~- 369 (497)
..+.++.+||-.|+|. |..+..+|+. |. +|+++..++...+.+++. +.. ..+.....+.
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~-------------~v~~~~~~~~~ 216 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GAD-------------DTINVGDEDVA 216 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCC-------------EEecCcccCHH
Confidence 3557888999998764 6677777777 77 899998888777655432 210 1111111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. ..+...+|+|+... + . ...+..+.+.|+++|.++
T Consensus 217 ~~l~~--~~~~~~vd~vld~~-g----~----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 217 ARLRE--LTDGEGADVVIDAT-G----N----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred HHHHH--HhCCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 11110 02345699999532 1 1 224566678899999987
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A | Back alignment and domain information |
|---|
Probab=82.23 E-value=0.66 Score=27.81 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.7
Q ss_pred ceecCCCCCCCHHHHHHHhhhhcC
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
.|-+|+...+ ...+..||+..|+
T Consensus 2 ~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 2 KCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp E-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCcCC-HHHHHHHHHhhCc
Confidence 6899999887 8899999999885
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=82.20 E-value=6.9 Score=44.48 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=72.6
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~-------gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|--||+|+ +.++..+|.+|. .|+.+|.++..++.+++.+... |... ... ....-.+|++. .+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~---~~~-~~~~~~~i~~~-~~~ 387 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRIT---PAK-MAGVLNGITPT-LSY 387 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---hhh-HHHHHhCeEEe-CCH
Confidence 5799999997 345667777888 9999999999998877665421 1000 000 00000123322 112
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG 431 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~ 431 (497)
.. -...|+|+=. +.....--..++.++.++++|+.+|.-++.++....+.
T Consensus 388 ~~--------~~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia 437 (714)
T TIGR02437 388 AG--------FDNVDIVVEA----VVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLA 437 (714)
T ss_pred HH--------hcCCCEEEEc----CcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 11 2468888832 33444556789999999999999999888777554443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=82.13 E-value=5.4 Score=34.20 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=59.2
Q ss_pred CEEEEEcCCCCH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
++|++||-|-=. .+..++++|+ .|+++|+.+. .|. ..+.++..|+.+..- .
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a~----------------------~g~~~v~DDitnP~~--~ 66 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TAP----------------------EGLRFVVDDITNPNI--S 66 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cCc----------------------ccceEEEccCCCccH--H
Confidence 489999988643 5777888898 8999999986 111 256888888877541 1
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+ -...|+|.| +...+.+.+.+-.+.+.++-.-++.|
T Consensus 67 i-Y~~A~lIYS------iRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 67 I-YEGADLIYS------IRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred H-hhCccceee------cCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 1 245788885 44556666666677777766555543
|
|
| >PHA00732 hypothetical protein | Back alignment and domain information |
|---|
Probab=81.89 E-value=1.5 Score=35.03 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=36.0
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
|..|-.|++.|.+...+-.||+..|. + | .|..||+.|.+ +..|+..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----------~-----------~--------~C~~CgKsF~~---l~~H~~~ 46 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT----------L-----------T--------KCPVCNKSYRR---LNQHFYS 46 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC----------C-----------C--------ccCCCCCEeCC---hhhhhcc
Confidence 35799999999999999999986653 1 1 49999999986 5677643
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.82 E-value=6.5 Score=40.20 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=59.3
Q ss_pred CCCCCCCCEEEEEcCCC--CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 292 NPSLMKGAVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt--G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
...+.+|.+||-.|+.. |.+++.+|++ |+ .++++--++.-.+.++ ..|-. ..+.+...+
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~----~lGAd-------------~vi~y~~~~ 198 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLK----ELGAD-------------HVINYREED 198 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHH----hcCCC-------------EEEcCCccc
Confidence 45567799999999654 5678888888 87 6777777765443333 33420 123333333
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.+--.. ......+|+|+... + ...+....+.|+++|.++
T Consensus 199 ~~~~v~~-~t~g~gvDvv~D~v-G---------~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 199 FVEQVRE-LTGGKGVDVVLDTV-G---------GDTFAASLAALAPGGRLV 238 (326)
T ss_pred HHHHHHH-HcCCCCceEEEECC-C---------HHHHHHHHHHhccCCEEE
Confidence 3221100 12345799999542 1 234555678899999988
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.76 E-value=5 Score=37.64 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=70.0
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
.-.|...|.+ .++..|+++|.-.|..+++.|.. |. .+|+++|++-..+..+...
T Consensus 58 ~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------------- 116 (237)
T COG3510 58 MWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------------- 116 (237)
T ss_pred HHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------------
Confidence 3355555544 45689999999999988877764 51 3899999986554322221
Q ss_pred CCCCceEEEecchhhcccccC---CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 357 NNAGKMEVVQGMVEELGESMQ---IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~---~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++|.++.|+..+..-..+ ...+.--+.++.- .-++....-+.|+...++|.-|-+++...
T Consensus 117 --~p~i~f~egss~dpai~eqi~~~~~~y~kIfvilD---sdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 117 --VPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVILD---SDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred --CCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEec---CCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 1589999998766431000 1112222223211 22334455667788889999999887433
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=81.58 E-value=8.8 Score=38.35 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.++.+||-.|+|. |.....+++. |+ +|+++..++...+.+++ .|. ..+...
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~--------------~~~~~~---- 206 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGV--------------ETVLPD---- 206 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCC--------------cEEeCc----
Confidence 34567889999998653 4445555655 87 69999999877766654 333 111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
... .....+|+|+... + . ...+....+.|+++|.++.
T Consensus 207 ~~~-----~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 207 EAE-----SEGGGFDVVVEAT-G----S----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ccc-----ccCCCCCEEEECC-C----C----hHHHHHHHHHhhcCCEEEE
Confidence 111 2345699998531 1 1 2244556678999999873
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=81.35 E-value=24 Score=33.74 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=64.4
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCH--hHHH--HHH-cCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGI--LSLF--AAQ-AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~--ls~~--la~-~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..+|-....-..-+.++++.|+.|. .++. +|. +..++++.|-+.+......++.+...++. +
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-------------~ 96 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-------------D 96 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-------------c
Confidence 3444444444455788999666442 2333 332 22348999999988777777887777762 4
Q ss_pred ceEEEecc-hhhcccccCCCCCceeEEEeccccccccChhhHH-HHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGM-VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS-SVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd-~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~-~vL~~~~r~LkpgG~li 419 (497)
.++|+.|+ .+++- + .-..+|.++... - ..+.. .+|+.+. +.|.|.++
T Consensus 97 ~vEfvvg~~~e~~~---~-~~~~iDF~vVDc---~---~~d~~~~vl~~~~--~~~~GaVV 145 (218)
T PF07279_consen 97 VVEFVVGEAPEEVM---P-GLKGIDFVVVDC---K---REDFAARVLRAAK--LSPRGAVV 145 (218)
T ss_pred cceEEecCCHHHHH---h-hccCCCEEEEeC---C---chhHHHHHHHHhc--cCCCceEE
Confidence 67998887 44442 1 234688888432 1 12333 5555433 55667665
|
The function of this family is unknown. |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.03 E-value=14 Score=36.67 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=61.8
Q ss_pred EEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHH-------HhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 300 VVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIA-------KDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 300 ~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~-------~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
+|--||+|. +.++..++++|. .|+++|.++..++.+++.+ ...|..... ... ....++.+. .+..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~---~~~-~~~~~l~~~-~~~~ 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA---DKE-AALARITGT-TDLD 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHH-HHHhCeEEe-CCHH
Confidence 577889986 446667777787 8999999999887665432 222210000 000 000123221 2222
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
. ....|+|+-.. -........++.++.++++|+.+++.++..+
T Consensus 79 ~--------~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~ 121 (282)
T PRK05808 79 D--------LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTSSL 121 (282)
T ss_pred H--------hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 2 24578888421 1122233588899999999998887665554
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.82 E-value=9.8 Score=39.05 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=57.5
Q ss_pred CCCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec--
Q 010913 292 NPSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-- 367 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-- 367 (497)
...+.++.+||-.|+| .|..+..++++ |+..|++++.++...+.+++ .|. ..++..
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~----------------~~vv~~~~ 236 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGA----------------THTVNASE 236 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCC----------------eEEeCCCC
Confidence 3456778899988875 35566667776 87569999998876655532 232 111111
Q ss_pred -ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 -MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 -d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+.. ..+...+|+++... + . ...+....+.|+++|+++
T Consensus 237 ~~~~~~l~~--~~~~~~vd~vld~~-~----~----~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 237 DDAVEAVRD--LTDGRGADYAFEAV-G----R----AATIRQALAMTRKGGTAV 279 (363)
T ss_pred ccHHHHHHH--HcCCCCCCEEEEcC-C----C----hHHHHHHHHHhhcCCeEE
Confidence 11 11110 02245699998532 1 0 234566778899999987
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=80.79 E-value=8.9 Score=43.49 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=69.7
Q ss_pred CEEEEEcCCCCH--hHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 299 AVVMDIGCGTGI--LSLFAA-QAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 299 ~~VLDvGCGtG~--ls~~la-~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++|.-||+|+=. ++..+| ++|. .|+.+|.++..++.+..++.. .+... .. .......+|++. .+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~i~~~-~~ 378 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMT---PA-ERDNQMALITGT-TD 378 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---HH-HHHHHHcCeEEe-CC
Confidence 579999999822 344455 5688 899999999998887765532 11100 00 000001234333 22
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeee
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~ 430 (497)
... -...|+|+=. ......--..++.++.++++|+.+|.-++.++....+
T Consensus 379 ~~~--------~~~adlViEa----v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~l 428 (699)
T TIGR02440 379 YRG--------FKDVDIVIEA----VFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQI 428 (699)
T ss_pred hHH--------hccCCEEEEe----ccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHH
Confidence 222 2457888732 2344455678999999999999999887777655444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=80.71 E-value=8.2 Score=39.01 Aligned_cols=43 Identities=28% Similarity=0.354 Sum_probs=32.2
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.+.++.+||-.|+|. |..+..+|++ |+ +|++++.++.-.+.++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLAR 204 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Confidence 567788999999654 5556666776 87 7999999887666654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=80.70 E-value=7.8 Score=39.79 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=33.0
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.++.+||-+|+|. |..+..+|++ |+..|++++.++...+.+++
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 224 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ 224 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4456788999998753 5566667776 88779999998766655443
|
|
| >KOG2462 consensus C2H2-type Zn-finger protein [Transcription] | Back alignment and domain information |
|---|
Probab=80.63 E-value=1.9 Score=42.41 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=50.9
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceeh-hhhhHhhccccc--ccccCCccCCHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKL-INYIRSQVAENR--CWICGLTCQSNQDLQNH 120 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKl-iNyiR~~~~~~~--c~~C~~~~~~~~~~~~H 120 (497)
.....|-.|++++.++-++-.|.+ .|+.-..= ..-|-. +.+-.| =--||....+.= |..|+++|.+...|+.|
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHir-TH~l~c~C--~iCGKa-FSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH 234 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIR-THTLPCEC--GICGKA-FSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH 234 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhh-ccCCCccc--cccccc-ccchHHhhcccccccCCCCccCCcccchhcchHHHHHH
Confidence 345789999999999999999988 45531110 000111 112222 225676654433 99999999999999999
Q ss_pred HHHhc
Q 010913 121 LHEAY 125 (497)
Q Consensus 121 m~~~~ 125 (497)
|+-..
T Consensus 235 mQTHS 239 (279)
T KOG2462|consen 235 MQTHS 239 (279)
T ss_pred HHhhc
Confidence 99653
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.59 E-value=15 Score=36.64 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=62.3
Q ss_pred CEEEEEcCCCC--HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGTG--ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGtG--~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~-------gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|.=||+|+- .++..++++|. .|+.+|.++..++.+.+.+..+ |.... ... .....++++. .+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~---~~~-~~~~~~i~~~-~~~ 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISE---EAR-AAALARISTA-TDL 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH---HHH-HHHHhCeEee-CCH
Confidence 56888999963 35566677787 8999999998887765543321 21000 000 0000123322 222
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
.. -...|+|+... .........++..+...++|+.+++.++.++.
T Consensus 79 ~~--------~~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 123 (292)
T PRK07530 79 ED--------LADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTSSIS 123 (292)
T ss_pred HH--------hcCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 22 13578888432 11223345677888899999988875555543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.20 E-value=9.2 Score=38.54 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=51.2
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.-||+|. | .++..+++.|. .+|+++|.++..++.+++ .|+ ... +..+..+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~---------------~~~-~~~~~~~~--- 63 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL---------------GDR-VTTSAAEA--- 63 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC---------------Cce-ecCCHHHH---
Confidence 5788999886 3 34455555564 489999999876654432 332 111 11122221
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
....|+|+... .......++..+..+++||++++
T Consensus 64 ----~~~aDvViiav------p~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 64 ----VKGADLVILCV------PVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ----hcCCCEEEECC------CHHHHHHHHHHHHhhCCCCCEEE
Confidence 13578888543 12234556677777788887654
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.11 E-value=10 Score=37.90 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=61.2
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC--CCCCCCCCCCCCC----CCCCceEEEecchh
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN--DFWWDRPQSEGNI----NNAGKMEVVQGMVE 370 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~--gl~~~~~~~~~~~----~~~~~i~~i~gd~~ 370 (497)
++|.-||+|+ | .++..++++|. .|+.+|.++..++.+++.+... ++........... ....++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899996 3 35666777787 8999999999988776654432 1100000000000 000112211 1111
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
. -...|+|+-.. .........++.++.++++|+.+++-.+..
T Consensus 82 ~--------~~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~S~tsg 123 (291)
T PRK06035 82 S--------LSDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIASNTSG 123 (291)
T ss_pred H--------hCCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEEEcCCC
Confidence 1 13478888432 112223567788888899998877644443
|
|
| >PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A | Back alignment and domain information |
|---|
Probab=80.07 E-value=1.1 Score=36.64 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=25.5
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhh
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHS 76 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~ 76 (497)
...|.+|...|.+...+..||+..|...+..
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 5899999999999999999999988776543
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.04 E-value=5.2 Score=40.49 Aligned_cols=43 Identities=33% Similarity=0.360 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.+.||++|--+|.| -|.++..+|++ |. +|+++|-+..--+.|-
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~ 222 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAI 222 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHH
Confidence 34589988888866 58899999999 88 9999999975444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 497 | ||||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 6e-43 | ||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 2e-42 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 2e-42 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 4e-42 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 5e-42 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 6e-42 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 2e-37 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 4e-36 | ||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 8e-31 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 2e-25 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 2e-25 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 2e-25 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 2e-25 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 2e-25 | ||
| 1wir_A | 121 | Solution Structure Of The C2h2 Zinc Finger Domain O | 2e-11 |
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|1WIR|A Chain A, Solution Structure Of The C2h2 Zinc Finger Domain Of The Protein Arginine N-methyltransferase 3 From Mus Musculus Length = 121 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 3e-66
Identities = 89/258 (34%), Positives = 144/258 (55%), Gaps = 26/258 (10%)
Query: 236 SKLEDKDSRVSLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSL 295
S L+ + + + YF SY +GIH EM+ DK+RT+SYR I +NP +
Sbjct: 3 SSHHHHHHSSGLVPRGSDLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHI 62
Query: 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355
K VV+D+GCGTGILS+FAA+AGA +V+ V+ SE + A I + N
Sbjct: 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLN------------ 109
Query: 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415
+ +++G +EE+ + VDV++SEWMGY LL+ESML SVL+A++++L G
Sbjct: 110 -KLEDTITLIKGKIEEV----HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG 164
Query: 416 GAILPDTATMFVAGFG---RGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHD 472
G++ PD T+ + + + FW++VYGF MSC+ + V+ + +V+V+D
Sbjct: 165 GSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPE----AVVEVLDPKT 220
Query: 473 LVTDSVVLQVSVRFHNYK 490
L+++ ++ + H
Sbjct: 221 LISEPCGIK-HIDCHTTS 237
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 2e-64
Identities = 81/241 (33%), Positives = 117/241 (48%), Gaps = 28/241 (11%)
Query: 249 KLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGT 308
S + + YF Y + M+ D VRT +Y++AIL+N + K +V+D+GCG+
Sbjct: 2 VFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGS 61
Query: 309 GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368
GILS FAAQAGA ++ AVEAS MA A + K N+ ++ V+ G
Sbjct: 62 GILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-------------DRIVVIPGK 107
Query: 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA 428
VEE+ P VD+++SE MGY L E ML S L A+ +LKP G + P + +A
Sbjct: 108 VEEV-----SLPEQVDIIISEPMGYMLFNERMLESYLHAKK-YLKPSGNMFPTIGDVHLA 161
Query: 429 GFG------RGGTSLPFW--ENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVL 480
F T FW + +G +S + V + P+VD D L+ SV
Sbjct: 162 PFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKY 221
Query: 481 Q 481
Sbjct: 222 T 222
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 210 bits (535), Expect = 5e-64
Identities = 90/232 (38%), Positives = 134/232 (57%), Gaps = 26/232 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ D VRT SYR AI++N L K +V+D+GCGTGILS+FAA+ GA
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
VI V+ S + +A ++ + N F K+ +++G +E++ +
Sbjct: 63 HVIGVDMSS-IIEMAKELVELNGFS-------------DKITLLRGKLEDV----HLPFP 104
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGG---TSLP 438
VD+++SEWMGY LLYESM+ +VL+ARD +L GG I PD ++ +AG L
Sbjct: 105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLN 164
Query: 439 FWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSVRFHNYK 490
+W++VYGF S V+ + PIVD V+ +++ T S L + + K
Sbjct: 165 YWQDVYGFDYSPFVPLVLHE----PIVDTVERNNVNTTSDKL-IEFDLNTVK 211
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-62
Identities = 83/278 (29%), Positives = 130/278 (46%), Gaps = 29/278 (10%)
Query: 213 MENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNES-YFGSYSSFGI 271
+ ++ F + +F + L+ + ++ ++ + YF Y
Sbjct: 73 IITLGCNSVLIQFATPHDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQ 132
Query: 272 HREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEK 331
+ M+ D VRT +Y++AIL+N + K +V+D+GCG+GILS FAAQAGA ++ AVEAS
Sbjct: 133 QQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST- 191
Query: 332 MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM 391
MA A + K N+ ++ V+ G VEE+ P VD+++SE M
Sbjct: 192 MAQHAEVLVKSNNLT-------------DRIVVIPGKVEEV-----SLPEQVDIIISEPM 233
Query: 392 GYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG------RGGTSLPFW--ENV 443
GY L E ML S L A+ +LKP G + P + +A F T FW +
Sbjct: 234 GYMLFNERMLESYLHAKK-YLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSF 292
Query: 444 YGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQ 481
+G +S + V + P+VD D L+ SV
Sbjct: 293 HGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYT 330
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 2e-62
Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 25/224 (11%)
Query: 260 ESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG 319
+ YF SY+ FGIH E++ D+VRT +YR ++ N L K VV+D+G GTGIL +FAA+AG
Sbjct: 29 DYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG 88
Query: 320 ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379
A +VI +E S ++ A +I K N + +++G VEE+ ++
Sbjct: 89 ARKVIGIECSS-ISDYAVKIVKANKLD-------------HVVTIIKGKVEEV----ELP 130
Query: 380 PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG---RGGTS 436
VD+++SEWMGYCL YESML++VL ARD+WL P G I PD AT++V
Sbjct: 131 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYK 190
Query: 437 LPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVL 480
+ +WENVYGF MSC+ +++ P+VDVVD LVT++ ++
Sbjct: 191 IHWWENVYGFDMSCIKDVAIKE----PLVDVVDPKQLVTNACLI 230
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 190 bits (483), Expect = 6e-56
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 39/242 (16%)
Query: 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA 318
YF +YS ++M+SD+VR D+Y A+ +N +G V+D+G G+GIL++++AQA
Sbjct: 25 YAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA 84
Query: 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378
GA +V AVEA++ MA A + K N+ +EV++G VE++
Sbjct: 85 GARKVYAVEATK-MADHARALVKANNLD-------------HIVEVIEGSVEDIS----- 125
Query: 379 QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG------- 431
P VDV++SEWMGY LL ESM SV+ ARD+WLKP G + P A M++A
Sbjct: 126 LPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRK 185
Query: 432 --RGGTSLPFWENV-------YGFTMSCVGREVVQDAAGI----PIVDVVDDHDLVTDSV 478
++ W N YG M + + ++ + + ++ ++
Sbjct: 186 RNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPT 245
Query: 479 VL 480
++
Sbjct: 246 IV 247
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 120 bits (300), Expect = 5e-29
Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 17/227 (7%)
Query: 278 DKVRTDSYRQAILE-----NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKM 332
D+++ D Y +A++ K V+ +G G G + ++ ++
Sbjct: 385 DQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQES 444
Query: 333 AAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL-GESMQIQPHSVDVLVSEWM 391
V I + N + ++ +++ + L G + D++VSE +
Sbjct: 445 LKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELL 504
Query: 392 GYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCV 451
G E + L +LKP +P T +V S + + ++ +
Sbjct: 505 GSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPI----MSTHIHQTIKAQSIPYL 559
Query: 452 GREVVQDAAGIPIVDVVDDHDLVTDSVVLQVS------VRFHNYKFL 492
R + G P +D + ++ + V Y L
Sbjct: 560 SRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPL 606
|
| >1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5 Length = 121 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-27
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 33 WGDWSEDDGGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLI 92
S + CLFCD ++S + F HC+L H F+ S+ + L+FYG KLI
Sbjct: 2 SSGSSGEPAHGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLI 61
Query: 93 NYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKLLYS 152
N+IR + E N + W+K++YLKP ++DD LL
Sbjct: 62 NFIRLKN--------------------PTVEYMNSIYNPVPWEKDEYLKPVLEDDLLLQF 101
Query: 153 FGEDEVDEEDND 164
ED +
Sbjct: 102 DVEDLYEPVSTP 113
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 36/218 (16%), Positives = 77/218 (35%), Gaps = 27/218 (12%)
Query: 256 KKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFA 315
K +++ F + E + + A+ +L + +++ DIGCGTG ++
Sbjct: 6 KTIHDFELNLICDFFSNMERQGPGSPEVTLK-ALSFIDNLTEKSLIADIGCGTGGQTMVL 64
Query: 316 AQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375
A +V ++ + + A+ + ++ + G +++L
Sbjct: 65 AGHVTGQVTGLDFLSGFIDIFNRNARQSGL-------------QNRVTGIVGSMDDL--- 108
Query: 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGT 435
+ +D++ SE Y + +E L+ ++LK GG + + F R
Sbjct: 109 -PFRNEELDLIWSEGAIYNIGFERGLNEW----RKYLKKGGYLAVSECSWFTD--ERPAE 161
Query: 436 SLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDL 473
FW + Y + + AG V L
Sbjct: 162 INDFWMDAYPEIDTIPNQVAKIHKAG---YLPVATFIL 196
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 9e-22
Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 29/176 (16%)
Query: 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA 318
++ +F YS +E + + + V+D+GCG G ++AA+
Sbjct: 10 DKHFFEQYSQMPRSKEGLKAAGE----WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH 65
Query: 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378
GA +V+ ++ SE+M A + + Q +E++ I
Sbjct: 66 GAKKVLGIDLSERMLTEAKRKTTSP-----------------VVCYEQKAIEDI----AI 104
Query: 379 QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA-ILPDTATMFVAGFGRG 433
+P + +V++S L Y + + LK G+ I +F A +
Sbjct: 105 EPDAYNVVLSSLA---LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQD 157
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 7e-15
Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 23/163 (14%)
Query: 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
++ R+A+ L A + DIGCGTG +LF A ++ ++ + + A
Sbjct: 32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVK 91
Query: 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS 402
+ A +++ + G ++ L Q +D++ SE Y + +E ++
Sbjct: 92 ANC-------------ADRVKGITGSMDNL----PFQNEELDLIWSEGAIYNIGFERGMN 134
Query: 403 SVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYG 445
+++ +LK GG I A+ F + R FW + Y
Sbjct: 135 E--WSK--YLKKGGFIAVSEASWFTS--ERPAEIEDFWMDAYP 171
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 7e-14
Identities = 37/190 (19%), Positives = 62/190 (32%), Gaps = 37/190 (19%)
Query: 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA 318
+F YS G E + A+ + G ++D+GCG G +A +
Sbjct: 9 QPDFFAGYSQLGRSIEGLDGAAE----WPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH 64
Query: 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378
GAS V+ ++ SEKM A A D + + +++L +
Sbjct: 65 GASYVLGLDLSEKMLARARAAGPDTG-----------------ITYERADLDKLH----L 103
Query: 379 QPHSVDVLVSEWMGYCLLYESMLSSVL--FARDQWLKPGGAIL-----PDTATMFVAGFG 431
S D+ S L Y ++ + + L PGG + P G+
Sbjct: 104 PQDSFDLAYS---SLALHYVEDVARLFRTVHQ--ALSPGGHFVFSTEHPIYMAPARPGWA 158
Query: 432 RGGTSLPFWE 441
W
Sbjct: 159 IDAEGRRTWP 168
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 1e-13
Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 22/152 (14%)
Query: 275 MISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS--RVIAVEASEKM 332
+++ + R +R+A+ + L G VV + CG L + +++ ++ +
Sbjct: 98 VLATRERHGHFRRALQRH--LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEA 155
Query: 333 AAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMG 392
AT++A + AG++ + + +L D+L S +
Sbjct: 156 LDGATRLAAGHAL-------------AGQITLHRQDAWKLDT-----REGYDLLTSNGLN 197
Query: 393 YCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424
++ ++ + Q LKPGGA++ T
Sbjct: 198 IYEPDDARVTELYRRFWQALKPGGALVTSFLT 229
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 2e-12
Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 41/175 (23%)
Query: 273 REMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKM 332
++ + + + ++E + V++D+G GTG + A G ++ +E + ++
Sbjct: 17 EALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRL 75
Query: 333 AAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMG 392
+A Q + G + +L P L++
Sbjct: 76 VELARQ-------------------THPSVTFHHGTITDL----SDSPKRWAGLLA---W 109
Query: 393 YCLLY--ESMLSSVL--FARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENV 443
Y L++ L L ++ GG + F G + P + V
Sbjct: 110 YSLIHMGPGELPDALVALRM--AVEDGGG--------LLMSFFSGPSLEPMYHPV 154
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 9e-12
Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 24/168 (14%)
Query: 254 DIKKVNESYFGSYSSFGIHRE--MISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGIL 311
+ V+ +Y + + + + Q + + S + ++IGC G
Sbjct: 6 TMVSVDNTYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAF 65
Query: 312 SLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371
+ A R+ ++ + A Q R + +I + +
Sbjct: 66 TEKLAPHCK-RLTVIDVMPRAIGRACQ----------RTKRWSHI------SWAATDILQ 108
Query: 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419
D++V + Y L + + + + + L PGG ++
Sbjct: 109 F-----STAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 5e-11
Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 29/139 (20%)
Query: 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
+ A+ + V+++ GTG + + RV A++ S +M A A + D
Sbjct: 32 SAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGRHGLD 90
Query: 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY--ESM 400
N +E Q + + D + + + L + +
Sbjct: 91 N------------------VEFRQQDLFDWTP-----DRQWDAV---FFAHWLAHVPDDR 124
Query: 401 LSSVLFARDQWLKPGGAIL 419
+ + + PGG +
Sbjct: 125 FEAFWESVRSAVAPGGVVE 143
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 5e-11
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 20/127 (15%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEG 354
+ +++D+GCG G +L AQ ++I + S M A I + + P +
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS------PDTYK 89
Query: 355 NINNAGKMEVVQGMVEEL--GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL 412
N+ ++ + + +D++ + + +E S L
Sbjct: 90 NV------SFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSA----YANL 139
Query: 413 KPGGAIL 419
+ G I
Sbjct: 140 RKDGTIA 146
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 5e-11
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 29/137 (21%)
Query: 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
+ + ILE+ V++ G GTG L+ AG V +E S +M +A +
Sbjct: 33 HYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKE------ 85
Query: 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSV 404
+ + +G P S+D +VS + L + +
Sbjct: 86 ------------KLPKEFSITEGDFLSFE-----VPTSIDTIVS-TYAFHHLTDDEKNVA 127
Query: 405 L--FARDQWLKPGGAIL 419
+ +++ L GG I+
Sbjct: 128 IAKYSQ--LLNKGGKIV 142
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 38/138 (27%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
+ L N K V++D GCG G + + ++ ++ + +
Sbjct: 6 PEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKE------- 57
Query: 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVS----EWMGYCLLYESML 401
++ V L + +I +SVD ++ M + ++
Sbjct: 58 ---------KFDS----------VITLSDPKEIPDNSVDFILFANSFHDMDD---KQHVI 95
Query: 402 SSVLFARDQWLKPGGAIL 419
S V R LK G ++
Sbjct: 96 SEV--KR--ILKDDGRVI 109
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 2e-10
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 250 LSAKDIKKVNESY-FGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGT 308
L A KK + +G+Y + +R + R + P +G V+D+GC
Sbjct: 4 LPAAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLK------PEWFRGRDVLDLGCNV 57
Query: 309 GILSL-FAAQAGASRVIAVEASEKMAAVATQIAKDN 343
G L+L A + G SR++ ++ ++ A Q +
Sbjct: 58 GHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHY 93
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 5e-10
Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 29/138 (21%)
Query: 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIA 340
R QAIL + V+D+GCG G L A G + V+ + A
Sbjct: 36 RRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAG 94
Query: 341 KDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESM 400
Q ++ D++ + + LL++
Sbjct: 95 AG---------------EVHLASYAQLAEAKVPV-----GKDYDLICANFA---LLHQD- 130
Query: 401 LSSVL--FARDQWLKPGG 416
+ +L L PGG
Sbjct: 131 IIELLSAMRT--LLVPGG 146
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 27/135 (20%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILS-LFAAQAGAS-RVIAVEASEKMAAVATQIAKDN 343
+ +L+ L +G V+D+G G G + G +V A++ E+M A +
Sbjct: 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL 85
Query: 344 DFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL--YESML 401
N+ EV++ ++ + ++VD + + L L
Sbjct: 86 GL--------KNV------EVLKSEENKIP----LPDNTVDFIFMA-FTFHELSEPLKFL 126
Query: 402 SSVLFARDQWLKPGG 416
+ R KP
Sbjct: 127 EEL--KR--VAKPFA 137
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-09
Identities = 33/153 (21%), Positives = 50/153 (32%), Gaps = 36/153 (23%)
Query: 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
D Y +A L + +GA ++D GCG G + + ++ G V+ + + A Q +
Sbjct: 32 DIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPE 90
Query: 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS 402
+ VV + QI D++VS L E
Sbjct: 91 ARW------------------VVGDL-----SVDQISETDFDLIVSAGNVMGFLAEDGRE 127
Query: 403 SVL--FARDQWLKPGGAILPDTATMFVAGFGRG 433
L R L G V GFG G
Sbjct: 128 PALANIHR--ALGADG--------RAVIGFGAG 150
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 2e-09
Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 13/154 (8%)
Query: 268 SFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSL-FAAQAGAS-RVIA 325
+ G + + R ++R AI E + G +++IGCG G LS A Q G+S V
Sbjct: 14 ALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTG 73
Query: 326 VEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDV 385
++ + + + + P + + + + ++LG I D
Sbjct: 74 IDIASPDYGAPLTLGQAWNHLLAGP-----LGDRLTVHFNTNLSDDLGP---IADQHFDR 125
Query: 386 LVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419
+V + + L Y + +++ +
Sbjct: 126 VV---LAHSLWYFASANALALLFKNMAAVCDHVD 156
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 2e-09
Identities = 22/158 (13%), Positives = 45/158 (28%), Gaps = 29/158 (18%)
Query: 283 DSYRQAILENPSLMK----GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
+ R +++ P ++D CG G + F +Q RVI ++ S+ +A +
Sbjct: 38 NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAK 96
Query: 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE 398
+ ++ QI D + G+ +
Sbjct: 97 ENTAANI-----------------SYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPV 139
Query: 399 SMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTS 436
+ + L G M++ G G
Sbjct: 140 EKRELLGQSLRILLGKQG-------AMYLIELGTGCID 170
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-09
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355
+GA+++D+G L + + G IA E E A + + +
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH------------ 62
Query: 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL 396
K++V G + + V V+ MG L+
Sbjct: 63 -GLKEKIQVRLA----NGLAAFEETDQVSVITIAGMGGRLI 98
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 2e-09
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 278 DKVRTDSYR--QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335
+ R R AI+ +L KG+V+ DIG GTG S+ A G V AVE S M
Sbjct: 13 SQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQ 71
Query: 336 ATQ 338
A
Sbjct: 72 AVV 74
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 3e-09
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 23/119 (19%)
Query: 254 DIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSL 313
K++ + Y + IH S +++ +L V+D+ G G ++
Sbjct: 2 GSDKIHHHHHHMYVTSQIHA--------KGSDLAKLMQIAALKGNEEVLDVATGGGHVAN 53
Query: 314 FAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372
A +V+A + +E + VA + N + E VQG E++
Sbjct: 54 AFAPFVK-KVVAFDLTEDILKVARAFIEGNGH--------QQV------EYVQGDAEQM 97
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 3e-09
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQA-GAS-RVIAVEASEKMAAVATQIAKDNDFWW 347
L ++GA V+D+GCGTG A++ G +VI V+ + VA + + + +
Sbjct: 76 LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135
Query: 348 DRPQSEGNINNAGKMEVVQGMVEELG--ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL 405
S N+ ++G +E L E + SVD+++S + ++
Sbjct: 136 FGSPSRSNV------RFLKGFIENLATAEPEGVPDSSVDIVISN---CVCNLSTNKLALF 186
Query: 406 FARDQWLKPGG 416
+ L+ GG
Sbjct: 187 KEIHRVLRDGG 197
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 4e-09
Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 36/177 (20%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356
GA ++++GCG G + AG V A + S ++AA A++
Sbjct: 43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGR-------------- 87
Query: 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416
V + +L + D + + + + L+ VL + LKPGG
Sbjct: 88 ------PVRTMLFHQLDA-----IDAYDAVWAHACLLHVPRDE-LADVLKLIWRALKPGG 135
Query: 417 AILPDTATMFVAGFGRG-GTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHD 472
+F A + G G Y + R +A V V
Sbjct: 136 --------LFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEG 184
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 5e-09
Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 45/178 (25%)
Query: 252 AKDIKKVNESYFGSYS------SFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIG 305
+++ KK ++ + I+ + + I+ + +DIG
Sbjct: 3 SENKKKFDKKGAKNMDEISKTLFAPIYPII----------AENIINRFGI-TAGTCIDIG 51
Query: 306 CGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365
G G LS+ A+ + A++ S+ M +A + D + ++++V
Sbjct: 52 SGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-------------NDRIQIV 98
Query: 366 QGMVEELGESMQIQP---HSVDVLVSEWMGYCLL-YESMLSSVLFARDQWLKPGGAIL 419
QG V + P + D++VS + + + R LK GG
Sbjct: 99 QGDVHNI-------PIEDNYADLIVSRGSVFFWEDVATAFREI--YR--ILKSGGKTY 145
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 5e-09
Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 15/135 (11%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILS-LFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
++ V+D+GCG G L + + ++ V+ S + +A +
Sbjct: 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL- 76
Query: 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSV 404
N +++++QG + + + H D + L S L +
Sbjct: 77 --------RLPRNQWERLQLIQGALTYQDK----RFHGYDAATVIEVIE-HLDLSRLGAF 123
Query: 405 LFARDQWLKPGGAIL 419
++ +P I+
Sbjct: 124 ERVLFEFAQPKIVIV 138
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 9e-09
Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 50/235 (21%)
Query: 260 ESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG 319
Y YS RE + + ++ + + + GA V++ GCG G ++ A+
Sbjct: 4 TEYVHGYSE----REALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN 59
Query: 320 AS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378
+ +++ S + A + + N N+ + +Q + L
Sbjct: 60 PDAEITSIDISPESLEKARENTEKNGI--------KNV------KFLQANIFSLP----F 101
Query: 379 QPHSVDVLVSEWMGYCL------LYESMLSSVLFARDQWLKPGGAIL---PDTATMFVAG 429
+ S D + ++ L L + LKPGG I D + +
Sbjct: 102 EDSSFDHIFVCFVLEHLQSPEEALKS-------LKK--VLKPGGTITVIEGDHGSCYF-- 150
Query: 430 FGRGGTSLPFWENVY-----GFTMSCVGREVVQ--DAAGIPIVDVVDDHDLVTDS 477
G ++ W + S VGR++ +G + V + S
Sbjct: 151 HPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPRMVYIDSS 205
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356
+ ++D+ G GI+ L + ++++ VE E++A +A + N
Sbjct: 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL----------- 97
Query: 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVS 388
++E+++ ++++ + I D++
Sbjct: 98 --EDQIEIIEYDLKKITD--LIPKERADIVTC 125
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 1e-08
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 33/127 (25%)
Query: 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN 357
V +++G GTG ++L G R IA++A M V Q D
Sbjct: 40 EPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVD------------- 85
Query: 358 NAGKMEVVQGMVEELGESMQIQP---HSVDVLVSEWMGYCLLYESMLSSVL--FARDQWL 412
K++VVQ + P SV ++ + L+ + VL R L
Sbjct: 86 --RKVQVVQADARAI-------PLPDESVHGVIVVH-LWHLVPD--WPKVLAEAIR--VL 131
Query: 413 KPGGAIL 419
KPGGA+L
Sbjct: 132 KPGGALL 138
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-08
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA 318
Y ++ + ++ + L V++ GCG G +
Sbjct: 18 LGGYRHPWARVLSGPD------PELTFDLWLSR--LLTPQTRVLEAGCGHGPDAARFGPQ 69
Query: 319 GASRVIAVEASEKMAAVATQIAKDNDF 345
A R A + S ++ +A A D
Sbjct: 70 AA-RWAAYDFSPELLKLARANAPHADV 95
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 25/105 (23%)
Query: 268 SFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVE 327
+ H +++ V+DIG G G +L + I V+
Sbjct: 2 AHHHHHHS----------LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVD 50
Query: 328 ASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372
A+++M VA+ A++ N+ QG E L
Sbjct: 51 ATKEMVEVASSFAQEKGV--------ENV------RFQQGTAESL 81
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355
K + DIG L FA + AS IA E + A + + +
Sbjct: 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS------------ 68
Query: 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL 396
+++V +G G ++ + ++D +V MG L+
Sbjct: 69 -GLTEQIDVRKG----NGLAVIEKKDAIDTIVIAGMGGTLI 104
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 254 DIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILE--NPSLMKGAVVMDIGCGTGIL 311
+ + E + S + F S ++ R I+ + K A V+D+GCG G
Sbjct: 11 NWHESAEKKWDSSAEF---WNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYG 67
Query: 312 SLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
+ ++ G + + V+ SE M + + D
Sbjct: 68 TYKLSRTGY-KAVGVDISEVMIQKGKERGEGPD 99
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 6e-08
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 297 KGAVVMDIGCGTGILSLFAAQ-AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355
+ + D+G G G + A + V E S++MA A + + D N
Sbjct: 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD----------N 85
Query: 356 INNAGKMEVVQGMVEELGESM---QIQPHSVDVLVS 388
+ ++EV++ V ++ + ++
Sbjct: 86 AAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-08
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
++K V D+G G+GIL++ A + GA V+A + S+ + A++N
Sbjct: 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISD----ESMTAAEEN 102
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-08
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQ 351
+ G V+D G G GIL+ + GA V A + A + +F
Sbjct: 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVS 105
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 9e-08
Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 15/135 (11%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILS-LFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
++ + V+D+GCG G L L ++ V+ S + A K
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK--- 74
Query: 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSV 404
++ + Q + + D + L E+ L +
Sbjct: 75 ------IDRLPEMQRKRISLFQSSLVYRDKR----FSGYDAATVIEVIE-HLDENRLQAF 123
Query: 405 LFARDQWLKPGGAIL 419
++ +P I+
Sbjct: 124 EKVLFEFTRPQTVIV 138
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
+ V+DIGC +G L + G RV +EA + A A +
Sbjct: 32 EWKEVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAEQAKEKLDHVVL 79
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 34/160 (21%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDND 344
R + + + DIG G+G +++ ++ + E SE+
Sbjct: 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS------ 67
Query: 345 FWWDRPQSEGNINNAG--KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS 402
N N G VQ + + P + ++G L + +
Sbjct: 68 ----------NAINLGVSDRIAVQQGAPRAFDDVPDNPDVI------FIGGGLTAPGVFA 111
Query: 403 SVLFARDQWLKPGG-----AILPDTATMFVAGFGRGGTSL 437
+ + L GG A+ ++ M A + G ++
Sbjct: 112 AAW----KRLPVGGRLVANAVTVESEQMLWALRKQFGGTI 147
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-07
Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 38/159 (23%)
Query: 278 DKVRTDSYRQAI-----LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKM 332
+ + YR I L + K V+D+ CG G S G V+ V+ SE M
Sbjct: 14 TDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDM 72
Query: 333 AAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMG 392
A + AK + +E + G +L + + D ++
Sbjct: 73 IRKAREYAKSRES---------------NVEFIVGDARKL----SFEDKTFDYVIF---I 110
Query: 393 YCLLY------ESMLSSVLFARDQWLKPGGAILPDTATM 425
+++ + V + LKP G + +
Sbjct: 111 DSIVHFEPLELNQVFKEVR----RVLKPSGKFIMYFTDL 145
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-07
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 24/139 (17%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356
V+D G G + L + +E S+ A +++N+F
Sbjct: 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF----------- 71
Query: 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL--FARDQWLKP 414
K+ + +G + +L + S+ + S + + + + R LKP
Sbjct: 72 ----KLNISKGDIRKL----PFKDESMSFVYSYGTIFHMRKND-VKEAIDEIKR--VLKP 120
Query: 415 GGAILPDTATMFVAGFGRG 433
GG + T + +G
Sbjct: 121 GGLACINFLTTKDERYNKG 139
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
Y + +L+ + G ++D+GCGTG L+ AQ+GA V+ + + M A Q
Sbjct: 45 YGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNYPHLH 103
Query: 345 F 345
F
Sbjct: 104 F 104
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 278 DKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337
+ RT Y+ +L V+D+ CGTG+ S+ + G V +V+AS+KM A
Sbjct: 38 TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYAL 96
Query: 338 QIAKDN 343
+ +
Sbjct: 97 KERWNR 102
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 27/142 (19%)
Query: 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSL-FAAQAGASRVIAVEASEKMAAVATQI 339
D Y ++ + ++D+G GTG+LS + + V+ SEKM +A
Sbjct: 28 FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR 87
Query: 340 AKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL--LY 397
+ N K++ ++ + D++VS + L
Sbjct: 88 FRGNL----------------KVKYIEADYSKYDF-----EEKYDMVVS---ALSIHHLE 123
Query: 398 ESMLSSVLFARDQWLKPGGAIL 419
+ + LK G +
Sbjct: 124 DEDKKELYKRSYSILKESGIFI 145
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355
KGA ++D+G L +F Q G IA E A + ++
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH------------ 68
Query: 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL 396
K++V G S + ++D + MG L+
Sbjct: 69 -GLTSKIDVRLA----NGLSAFEEADNIDTITICGMGGRLI 104
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 29/154 (18%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
R I+ K V +D+GCGTG ++L A RV A++ + + + + +
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGL 80
Query: 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL 405
+ +++G E + +G L +L
Sbjct: 81 GD-------------NVTLMEGDAPEALCKIP-DIDIA------VVGGSG---GELQEIL 117
Query: 406 FARDQWLKPGG-----AILPDTATMFVAGFGRGG 434
LKPGG AIL +T + G
Sbjct: 118 RIIKDKLKPGGRIIVTAILLETKFEAMECLRDLG 151
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-07
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
+LE ++K +D+GCG G SL+ A G V A + + A +I
Sbjct: 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSI 76
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 23/237 (9%)
Query: 261 SYFGSYSSF--GIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA 318
+ + + I+R I + + I + + + V+D+ CGTGI +L A+
Sbjct: 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER 62
Query: 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378
G V+ ++ E+M VA + AK+ + K+E +QG V E+
Sbjct: 63 GY-EVVGLDLHEEMLRVARRKAKERNL---------------KIEFLQGDVLEI-----A 101
Query: 379 QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLP 438
+ D + + E L + + LKPGG + D F G
Sbjct: 102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNE 161
Query: 439 FWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSVRFHNYKFLRYM 495
M E + + + + ++ + + + +R +
Sbjct: 162 QKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPREVRLL 218
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 260 ESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG 319
+ + D + R + ++++G G + +
Sbjct: 9 DQEIKDTAGHKYAYNFDFDVMHPFMVRAFT----PFFRPGNLLELGSFKGDFTSRLQEHF 64
Query: 320 ASRVIAVEASEKMAAVATQIAKDN 343
+ VEASE+ + A KD
Sbjct: 65 N-DITCVEASEEAISHAQGRLKDG 87
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 6e-07
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
R + +L K VV+D+GCG+G +++ A+ V A++ + V Q
Sbjct: 24 RAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKF 80
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-07
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 15/136 (11%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS--RVIAVEASEKMAAVATQIAKDN 343
+ L++ + ++D GCG+G L S +I V+ S K A A ++
Sbjct: 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK 769
Query: 344 DFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSS 403
N + G + E + H VD+ + E
Sbjct: 770 LNK--------EACNVKSATLYDGSILEFDS----RLHDVDIGTC-LEVIEHMEEDQACE 816
Query: 404 VLFARDQWLKPGGAIL 419
P I+
Sbjct: 817 FGEKVLSLFHPKLLIV 832
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 8e-07
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 42/161 (26%)
Query: 268 SFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVE 327
+ ++ +I + L V+D+G GTG SLF + G V+ V+
Sbjct: 36 KWKLYHRLIGSFLEE-----------YLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVD 83
Query: 328 ASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV 387
S++M VA + VV+ E+L + + ++
Sbjct: 84 PSKEMLEVAREKGVK--------------------NVVEAKAEDL----PFPSGAFEAVL 119
Query: 388 SEWMGYCLL--YESMLSSVLFARDQWLKPGGAILPDTATMF 426
+ + + S + R L P G ++ +
Sbjct: 120 ALGDVLSYVENKDKAFSEI--RR--VLVPDGLLIATVDNFY 156
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 8e-07
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 26/167 (15%)
Query: 256 KKVNESYFGSYSSFG-IHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLF 314
K++ + G +G I I+ + ++ + E P+ + +D G G G ++
Sbjct: 39 KQIPPTVDGMLGGYGHISSIDINSSRKF--LQRFLREGPNKTGTSCALDCGAGIGRITKR 96
Query: 315 AAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374
V V+ +E A + +++
Sbjct: 97 LLLPLFREVDMVDITEDFLVQAKTYLGE--------------EGKRVRNYFCCGLQDF-- 140
Query: 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD--QWLKPGGAIL 419
+P S DV+ +W + + + F R L+P G I+
Sbjct: 141 --TPEPDSYDVIWIQW---VIGHLTDQHLAEFLRRCKGSLRPNGIIV 182
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 9e-07
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356
V+++ G G L+ G V A+E S + A + E
Sbjct: 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLA-----------EAPA 129
Query: 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416
+ + +VQG + +V L E+ + + + L+PGG
Sbjct: 130 DVRDRCTLVQGDMSAFAL-----DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGG 184
Query: 417 AILPDTAT 424
L A
Sbjct: 185 KFLLSLAM 192
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 9e-07
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 25/136 (18%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
+ + + + +D G G G ++ + +E + M A +
Sbjct: 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPV 141
Query: 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL 405
+ + +E + P++ D++V +W +Y + V
Sbjct: 142 G----------------KFILASMETA----TLPPNTYDLIVIQW---TAIYLTDADFVK 178
Query: 406 FARD--QWLKPGGAIL 419
F + Q L P G I
Sbjct: 179 FFKHCQQALTPNGYIF 194
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 295 LMKGAVVMDIGCGTGILS-LFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
L + D+GCG G + L + G + + +++ + M A + +F
Sbjct: 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNF 82
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQA-GAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQS 352
+ +G V+D CG G + F A G + RV + +K A T+ D
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL--------- 70
Query: 353 EGNINNAGKMEVVQGMVEELGESMQIQPHSV----DVLVSEWMGYCLLYESMLSSVLFAR 408
I+ +++ + + + + +V L S E+ + ++ A
Sbjct: 71 -NLIDRV---TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAM 126
Query: 409 DQWLKPGGAIL 419
+ L GG I
Sbjct: 127 E-LLVTGGIIT 136
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKD 342
+ K ++D GCG G L L S+ +++ E + A A ++ +
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 2e-06
Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 21/138 (15%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEG 354
+ +G V+D+ G GI + + + I +E +++ A A+ N
Sbjct: 91 IREGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAV----AARHNI--------PL 137
Query: 355 NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGY------CLLYESMLSSVLFAR 408
+N + ++ G +E + + D + + ++
Sbjct: 138 LLNEGKDVNILTGDFKEYLPLI--KTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLA 195
Query: 409 DQWLKPGGAILPDTATMF 426
+ L +IL + M
Sbjct: 196 TELLPFCSSILAKLSPMI 213
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 256 KKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLM---KGAVVMDIGCGTGILS 312
KK F + + + +L + +G VV D+G GTG+LS
Sbjct: 5 KKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLS 64
Query: 313 LFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
A GA VI VE ++ V + +
Sbjct: 65 YGALLLGAKEVICVEVDKEAVDVLIENLGEFK 96
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 40/173 (23%)
Query: 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339
V +Y + L+ ++IG GTG ++ I VE SE+MA I
Sbjct: 30 VHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAE----I 80
Query: 340 AKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYES 399
A+ + V++G E L ++ S D + C + +
Sbjct: 81 ARKRG-----------------VFVLKGTAENLP----LKDESFDFALM-VTTICFVDD- 117
Query: 400 MLSSVL--FARDQWLKPGGAIL---PDTATMFVAGFGRGGTSLPFWENVYGFT 447
L R LK GG ++ D + + + F++N F+
Sbjct: 118 -PERALKEAYR--ILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFS 167
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 272 HREMISDKVRTDSYRQAILE--NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEAS 329
+ + I + + + ++D+ CGTG + +E S
Sbjct: 13 DLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELS 71
Query: 330 EKMAAVATQIAKDNDF 345
E M A + D
Sbjct: 72 EDMLTHARKRLPDATL 87
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 5e-06
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
+A LE + V+D+ CG G +L A A+ V+ VE + Q A+ N
Sbjct: 275 VARA-LEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLN- 331
Query: 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV 387
+ N +EE + D ++
Sbjct: 332 ----------GLQNV---TFYHENLEEDVTKQPWAKNGFDKVL 361
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
L G V+D+G G+G+L++ A + G + + V+ + A+ N
Sbjct: 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDP----MVLPQAEAN 161
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-06
Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 4/126 (3%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFW 346
I+ L G ++++G G+G +S + A G + VE E A +
Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI 161
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE--WMGYCLLYESMLSSV 404
+ S +I + ++ ++ ++ + ++ Y ++ +V
Sbjct: 162 GNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTV 221
Query: 405 LFARDQ 410
L
Sbjct: 222 LSLSAS 227
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Length = 258 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 7e-06
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 7/102 (6%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
+ I + + V D G G S A G V A E +A + +D
Sbjct: 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLL------SDG 124
Query: 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV 387
+ + A ++ + G E ++ D++
Sbjct: 125 IRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPDIVY 166
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 37/160 (23%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
R L + +G ++ DIG G+G +S+ AG R I +E +
Sbjct: 44 RALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQK------- 95
Query: 346 WWDRPQSEGNINNAG---KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS 402
NI+ G +M VQG + P +V +
Sbjct: 96 ---------NIDTYGLSPRMRAVQGTAPAALADLP-LPEAV-----------FIGGGGSQ 134
Query: 403 SVLFARDQWLKPGG-----AILPDTATMFVAGFGRGGTSL 437
++ +WL PG A+ ++ T+ R G L
Sbjct: 135 ALYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQL 174
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 21/159 (13%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAIL-ENPSLMKGAVVMDIGCGTGILSLFAAQAGA 320
+ G Y E+ +RTD + + L L + A +D+G G G + F +
Sbjct: 46 HVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG 105
Query: 321 SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQP 380
+ + + + A + V G E + +
Sbjct: 106 VSIDCLNIAPVQNKRNEEYNNQAGL-------------ADNITVKYGSFLE----IPCED 148
Query: 381 HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419
+S D + S+ L+ V + LKP G +
Sbjct: 149 NSYDFIWSQ---DAFLHSPDKLKVFQECARVLKPRGVMA 184
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 33/210 (15%)
Query: 271 IHREMISDKVRTDSYRQA-------ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRV 323
+H D S A ++ + G V+D+GCG G ++ A A RV
Sbjct: 28 LHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRV 87
Query: 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSV 383
+ S A A A ++ + + + S
Sbjct: 88 TGISISRPQVNQANARATAAGL-------------ANRVTFSYADAMD----LPFEDASF 130
Query: 384 DVLVSEWMGYCLLYESMLSSVLFARD--QWLKPGGAILPDTATMFVAGFGRGGTSLPFWE 441
D + + M R+ + L+PGG + + G ++ +
Sbjct: 131 DAVWALESL-----HHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR 185
Query: 442 NVYGFTMSCVGREVVQ--DAAGIPIVDVVD 469
G E A + + VD
Sbjct: 186 AGGGVLSLGGIDEYESDVRQAELVVTSTVD 215
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 9e-06
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVA 336
G ++++G GTG + + + + VE SE M AV
Sbjct: 37 GESLLEVGAGTG---YWLRRLPYPQKVGVEPSEAMLAVG 72
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
K A ++D+ CGTG+ A + V +E S M A+A + D
Sbjct: 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPDAVL 97
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 23/154 (14%)
Query: 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFW 346
++ + + ++ + G G + F A G V AV+ S A A Q+A++
Sbjct: 19 DFLVSVANQIPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV- 76
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF 406
K+ VQ + + I + + +V +C L S+ +
Sbjct: 77 --------------KITTVQSNLADF----DIVADAWEGIV---SIFCHLPSSLRQQLYP 115
Query: 407 ARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFW 440
Q LKPGG + + + GG
Sbjct: 116 KVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDL 149
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 27/185 (14%), Positives = 57/185 (30%), Gaps = 30/185 (16%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD 348
IL + L + + V+DIG G G ++ + + ++ + +A + N+
Sbjct: 47 ILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNN---- 102
Query: 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR 408
K+ + + ++ D++ S +L S+ + +
Sbjct: 103 ------------KIIFEANDILT----KEFPENNFDLIYSRDA---ILALSLENKNKLFQ 143
Query: 409 D--QWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDA--AGIPI 464
+WLKP G +L + +T+ V E
Sbjct: 144 KCYKWLKPTGTLL--ITDYCATEKENWDDEFKEYVKQRKYTLITV-EEYADILTACNFKN 200
Query: 465 VDVVD 469
V D
Sbjct: 201 VVSKD 205
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356
+ ++DIGCG+G +SL A G V ++ + + +A A+ N
Sbjct: 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGL---------NQ 79
Query: 357 NNAGKMEVVQGMVEEL 372
GK E L
Sbjct: 80 KTGGKAEFKVENASSL 95
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 23/136 (16%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFW 346
IL + G V++ G G+G +SLF ++A RVI+ E + +A + K
Sbjct: 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 156
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE----WMGYCLLYESMLS 402
W E +N + + + E I+ + D + + + + Y
Sbjct: 157 WKLSHVEEWPDNV---DFIHKDISGATE--DIKSLTFDAVALDMLNPHVTLPVFYPH--- 208
Query: 403 SVLFARDQWLKPGGAI 418
LK GG
Sbjct: 209 ---------LKHGGVC 215
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 265 SYSSF-GIHREMISDKVRTDSYRQAILE--NPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
Y+ F I+ ++I V + I+E + + +D+ CGTG L+
Sbjct: 2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK- 60
Query: 322 RVIAVEASEKMAAVATQIAKDNDF 345
AV+ S++M + A +
Sbjct: 61 NTWAVDLSQEMLSEAENKFRSQGL 84
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 23/132 (17%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD 348
+ + G ++D+G G+G + A+ ++ S A A + A++
Sbjct: 28 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV--- 84
Query: 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL-LYESMLSSVLFA 407
+ ++ + + DV + + +
Sbjct: 85 ----------SERVHFIHNDAAGY-----VANEKCDVAACVGATWIAGGFAGAEELL--- 126
Query: 408 RDQWLKPGGAIL 419
Q LKPGG +L
Sbjct: 127 -AQSLKPGGIML 137
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-05
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS--RVIAVEASEKMAAVATQIAKDNDFW 346
I+ + G +++ G G+G L+LF A RV++ E E A +A + K F
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV--SEWMGYCLLYESMLSSV 404
+I + E V ++ +L + ++ H+ L ++ Y ++
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLH 204
Query: 405 LFARD 409
R+
Sbjct: 205 EKLRE 209
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 38/163 (23%)
Query: 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA 318
++ YF F RE++ ++R P V+DIGCG G +
Sbjct: 11 SDYYFLFEEKFRGSRELVKARLRRYI--------PYFKGCRRVLDIGCGRGEFLELCKEE 62
Query: 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378
G I V+ +E M K VV+ E +
Sbjct: 63 GI-ESIGVDINEDMIKFCEG----------------------KFNVVKSDAIE--YLKSL 97
Query: 379 QPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAIL 419
+D ++ + + + L L +L +K I+
Sbjct: 98 PDKYLDGVM---ISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
P L ++ +GCG LS G V +V+ S + A
Sbjct: 37 EPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV 88
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 4e-05
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 11/150 (7%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD 348
+ P L+ G V ++G G G++S+ A AGA +V+A + + + N
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD---PEILNSLESNIREHT 127
Query: 349 RPQSEGNINNAGKMEVVQ---GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL 405
+VV G + + VL+++ L + ++L
Sbjct: 128 ANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLAD----LLSFHQAHDALL 183
Query: 406 FARDQWLKPGGAILPDTATMFVAGFGRGGT 435
+ L P + R
Sbjct: 184 RSVKMLLALPAND-PTAVALVTFTHHRPHL 212
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 6e-05
Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 15/134 (11%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD 348
L +G V+D+GCG G L +AG V+ +E A A++ +
Sbjct: 56 CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 115
Query: 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR 408
+ G +LG+ + + Y L
Sbjct: 116 VFFRAQDS---------YGRHMDLGKEFDV------ISSQFSFHYAFSTSESLDIAQRNI 160
Query: 409 DQWLKPGGAILPDT 422
+ L+PGG +
Sbjct: 161 ARHLRPGGYFIMTV 174
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 30/105 (28%)
Query: 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV--ATQIAKD 342
R+ L++G ++D+ G G ++ A+ V +++E A+ A + +
Sbjct: 282 VRKVS----ELVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNE--FAIEMARRNVEI 334
Query: 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV 387
N N++ V E D ++
Sbjct: 335 N-----------NVDAE---FEVASDREVS-------VKGFDTVI 358
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 8e-05
Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 4/126 (3%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFW 346
I + +G ++D G G+G + A+A + +V A E E+ A +A
Sbjct: 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI 163
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV--SEWMGYCLLYESMLSSV 404
+I+ + V + ++ + + L + C + ++
Sbjct: 164 ERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETL 223
Query: 405 LFARDQ 410
++
Sbjct: 224 KKLQEL 229
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Query: 284 SYRQAILENPSLMKGAVVMDIGCGTG-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
+++ + + +D+G G G ++ AA VE ++ + A+
Sbjct: 160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIP----AKYAET 215
Query: 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS 402
D + + + + + +G +I SV + V + +
Sbjct: 216 MDREFRKWMKWYGKKH-AEYTLERGDFLSEEWRERIANTSV-IFV-----NNFAFGPEVD 268
Query: 403 SVLFARDQWLKPGGAIL 419
L R +K GG I+
Sbjct: 269 HQLKERFANMKEGGRIV 285
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 27/186 (14%)
Query: 265 SYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVI 324
+Y F + + V + +LE + G + DIGCGTG +L A V
Sbjct: 3 AYEQFAYVYDELMQDVPYPEWVAWVLEQ--VEPGKRIADIGCGTGTATLLLADHY--EVT 58
Query: 325 AVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVD 384
V+ SE+M +A + A + + ++ + EL P VD
Sbjct: 59 GVDLSEEMLEIAQEKAMETNR---------------HVDFWVQDMRELEL-----PEPVD 98
Query: 385 VLVSEW--MGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWEN 442
+ + Y L E+ + + + L GG +L D + + G +
Sbjct: 99 AITILCDSLNY-LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAE 157
Query: 443 VYGFTM 448
+
Sbjct: 158 QSSYIW 163
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
+EN + K ++D+GCG G++ + A S + + + +A + K N
Sbjct: 45 VENVVVDKDDDILDLGCGYGVIGIALADEVKS-TTMADINRRAIKLAKENIKLN 97
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Length = 189 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 36/151 (23%)
Query: 277 SDKVRTDSYRQA---ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMA 333
+D+VR ++ I+ + G V+D+ G+G L L A GA+ V+ VE+
Sbjct: 26 TDRVR-----ESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESD---Q 77
Query: 334 AVATQIAKDNDFWWDRPQSEGNIN--NAGKMEVVQGMVEELGESMQIQPHSVDVLV---- 387
A IA+ NI + +G V + + P + VL
Sbjct: 78 RSAAVIAR-------------NIEALGLSGATLRRGAVAAVVAAGTTSPVDL-VLADPPY 123
Query: 388 SEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418
+ +++L+++ + W + G
Sbjct: 124 NVDSA---DVDAILAAL--GTNGWTREGTVA 149
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDR 349
++ V++ TG ++ A G S+V++V+ S++ +A Q + N +
Sbjct: 217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSK 272
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
++ V+D+GCG G SL+ + G V + + +E A + + +
Sbjct: 118 IISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKEN 166
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
R A+ + G V+D+ TG ++ AA AGA VI ++ S + A + AK N
Sbjct: 208 RLALEKWVQ--PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV 265
Query: 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV 387
+M+ + G E E +Q + D++V
Sbjct: 266 -------------EDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND-----FWW 347
P ++G V+D+G G G L+L A+ GA V+ VE + + N
Sbjct: 229 PEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHS 287
Query: 348 D 348
D
Sbjct: 288 D 288
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 2e-04
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
Query: 7 PET-----EETRKRIEENHEEEEEE-----EETEQDWGDWSE 38
PE+ EE RKR++E + E+ ++D +W++
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ 125
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 30/151 (19%), Positives = 41/151 (27%), Gaps = 37/151 (24%)
Query: 273 REMISDKVRTDSYRQAI---LENPSLMKGAVVMDIGCGTG-ILSLFAAQAGASRVIAVEA 328
R D R AI L K V+DIGCG G FA ++
Sbjct: 58 RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV 117
Query: 329 SEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVS 388
S+ A + F L S+D ++
Sbjct: 118 SKVAIKAAAKRYPQVTF-------------------CVASSHRL----PFSDTSMDAIIR 154
Query: 389 EWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419
C E AR +KPGG ++
Sbjct: 155 -IYAPCKAEE-------LAR--VVKPGGWVI 175
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
L ++V+D G G + F A +V A + E+ +Q D
Sbjct: 15 FLAEVLDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGI 69
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
R ++ G V+++ T S+ AA GA +V+ +++ A++ + N
Sbjct: 203 RNELING--SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL 260
Query: 346 WWDR 349
Sbjct: 261 DMAN 264
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
K VV+D CG G ++ A G RVIA++ A+A A+
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVY 123
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQ-AGASRVIAVEASEKMAAVATQIAKDND---- 344
L + V+D+GCG G+LS+ A+ + R+ + S + N
Sbjct: 189 LSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGE 248
Query: 345 FWWD 348
+
Sbjct: 249 VFAS 252
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 8e-04
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 290 LENPSLMKGAVVMDIGCGT-GILSLFAAQAGASRVIAVEASEKMAAVATQIAK 341
+G + IG G + + + RV VE +A ++ ++ +
Sbjct: 115 AALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE 167
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 1wir_A | 121 | Protein arginine N-methyltransferase 3; C2H2 zinc | 99.96 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.95 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.95 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.94 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.94 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.9 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.85 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.85 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 99.83 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.64 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.64 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.64 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.64 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.63 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.63 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.62 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.62 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.62 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.62 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.62 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.62 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.61 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.59 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.59 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.59 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.59 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.59 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.59 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.59 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.58 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.58 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.57 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.57 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.57 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.56 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.56 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.56 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.56 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.56 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.56 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.56 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.56 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.56 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.56 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.55 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.55 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.55 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.54 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.54 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.54 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.54 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.54 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.54 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.54 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.53 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.53 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.53 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.53 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.53 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.53 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.53 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.52 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.52 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.52 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.52 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.52 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.52 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.52 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.51 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.51 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.51 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.5 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.5 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.5 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.5 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.5 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.5 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.49 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.49 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.49 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.49 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.48 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.48 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.48 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.47 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.47 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.47 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.47 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.47 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.47 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.47 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.47 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.46 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.46 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.46 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.46 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.46 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.46 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.46 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.45 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.45 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.45 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.44 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.44 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.44 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.44 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.44 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.44 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.44 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.44 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.44 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.44 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.43 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.43 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.43 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.43 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.43 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.43 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.43 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.43 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.42 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.42 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.42 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.42 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.42 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.41 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.41 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.41 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.41 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.41 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.4 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.4 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.4 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.39 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.39 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.38 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.38 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.38 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.38 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.37 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.37 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.37 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.37 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.37 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.37 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.36 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.36 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.36 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.36 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.36 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.35 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.35 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.35 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.35 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.35 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.35 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.35 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.35 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.34 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.34 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.33 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.33 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.33 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.33 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.33 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.33 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.33 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.32 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.31 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.31 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.31 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.31 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.3 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.3 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.3 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.3 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.29 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.29 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.29 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.29 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.28 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.28 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.28 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.28 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.28 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.27 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.27 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.27 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.27 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.27 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.27 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.26 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.26 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.26 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.26 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.26 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.25 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.25 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.25 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.24 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.24 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.24 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.24 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.24 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.24 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.23 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.23 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.23 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.22 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.22 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.21 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.21 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.2 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.19 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.19 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.18 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.17 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.17 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.16 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.16 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.15 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.14 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.14 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.14 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.13 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.13 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.13 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.13 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.11 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.1 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.1 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.1 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.07 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.07 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.07 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.06 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.05 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.04 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.03 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.02 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.02 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.02 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.02 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.01 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.99 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.99 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.99 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.97 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.96 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.92 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.9 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.9 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.84 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.83 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.82 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.81 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.79 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.76 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.73 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.68 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.66 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.64 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.64 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.62 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.62 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.57 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.52 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.44 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.42 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.37 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.36 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.3 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.23 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.22 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.2 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.19 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.12 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.04 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.0 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.93 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.9 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.83 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.79 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.74 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.73 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.62 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.56 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.23 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.21 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.21 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.98 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.84 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.74 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.38 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.21 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.19 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.16 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.15 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.1 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.03 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.96 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.92 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.81 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.77 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.75 | |
| 3uk3_C | 57 | Zinc finger protein 217; transcription factor, DNA | 95.74 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.64 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.62 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.57 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.53 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.47 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.45 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.44 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.44 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.41 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.4 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.36 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.31 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.31 | |
| 1bbo_A | 57 | Human enhancer-binding protein MBP-1; DNA-binding | 95.31 | |
| 2drp_A | 66 | Protein (tramtrack DNA-binding domain); protein-DN | 95.15 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.13 | |
| 2ct1_A | 77 | Transcriptional repressor CTCF; CCCTC-BINDING fact | 95.12 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.12 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.04 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.95 | |
| 1x6e_A | 72 | Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca | 94.92 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.91 | |
| 2dmd_A | 96 | Zinc finger protein 64, isoforms 1 and 2; ZNF338, | 94.9 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.89 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.85 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.81 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.8 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.79 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.78 | |
| 2lce_A | 74 | B-cell lymphoma 6 protein; structural genomics, no | 94.75 | |
| 2yt9_A | 95 | Zinc finger-containing protein 1; C2H2, structural | 94.73 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.73 | |
| 2adr_A | 60 | ADR1; transcription regulation, zinc finger,; NMR | 94.7 | |
| 2kmk_A | 82 | Zinc finger protein GFI-1; tandem repeat zinc fing | 94.69 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.69 | |
| 1x5w_A | 70 | Zinc finger protein 64, isoforms 1; ZNF338, nuclea | 94.65 | |
| 2ee8_A | 106 | Protein ODD-skipped-related 2; zinc binding, ZF-C2 | 94.46 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 94.44 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.3 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.29 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.16 | |
| 2d9h_A | 78 | Zinc finger protein 692; ZF-C2H2 domain, structura | 94.15 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.0 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.99 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.87 | |
| 2cot_A | 77 | Zinc finger protein 435; ADK_LID domain, zinc fing | 93.86 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.85 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.85 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 93.83 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.81 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.81 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.76 | |
| 1a1h_A | 90 | QGSR zinc finger peptide; complex (zinc finger/DNA | 93.74 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.72 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.61 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.56 | |
| 2dmi_A | 115 | Teashirt homolog 3; zinc finger protein 537, struc | 93.49 | |
| 2csh_A | 110 | Zinc finger protein 297B; ZF-C2H2 domain, zinc fin | 93.48 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 93.44 | |
| 2gqj_A | 98 | Zinc finger protein KIAA1196; ZF-C2H2 like domain, | 93.42 | |
| 2dlq_A | 124 | GLI-kruppel family member HKR3; ZF-C2H2 domain, st | 93.4 | |
| 2lv2_A | 85 | Insulinoma-associated protein 1; structural genomi | 93.36 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.36 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.35 | |
| 1x6h_A | 86 | Transcriptional repressor CTCF; zinc finger protei | 93.32 | |
| 2dlq_A | 124 | GLI-kruppel family member HKR3; ZF-C2H2 domain, st | 93.3 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.27 | |
| 2rpc_A | 155 | Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr | 93.19 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.19 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.14 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.98 | |
| 2ebt_A | 100 | Krueppel-like factor 5; C2H2-type zinc-finger, met | 92.96 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.94 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.83 | |
| 2wbs_A | 89 | Krueppel-like factor 4; transcription-DNA complex, | 92.56 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.53 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.5 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.47 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 92.37 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.3 | |
| 1llm_C | 88 | Chimera of ZIF23-GCN4; dimerization, DNA recogniti | 92.25 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.17 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.1 | |
| 4gzn_C | 60 | ZFP-57, zinc finger protein 57; transcription-DNA | 91.98 | |
| 1f2i_G | 73 | Fusion of N-terminal 17-MER peptide extension to Z | 91.95 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 91.82 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.82 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 91.73 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 91.71 | |
| 2ej4_A | 95 | Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi | 91.71 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.65 | |
| 1wjp_A | 107 | Zinc finger protein 295; ZF-C2H2 domain, zinc bind | 91.64 | |
| 2elu_A | 37 | Zinc finger protein 406; ZFAT zinc finger 1, struc | 91.62 | |
| 2lt7_A | 133 | Transcriptional regulator kaiso; zinc finger, doub | 91.34 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 91.29 | |
| 2dlk_A | 79 | Novel protein; ZF-C2H2 domain, zinc finger protein | 91.11 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 91.1 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.04 | |
| 1a1h_A | 90 | QGSR zinc finger peptide; complex (zinc finger/DNA | 90.93 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.64 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 90.59 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 90.5 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.39 | |
| 2jp9_A | 119 | Wilms tumor 1; DNA binding, nucleic acid recogniti | 90.05 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.87 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 89.69 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 89.64 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 89.64 | |
| 2ctd_A | 96 | Zinc finger protein 512; zinc binding, two ZF-C2H2 | 89.37 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 89.12 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 88.82 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 88.66 | |
| 1llm_C | 88 | Chimera of ZIF23-GCN4; dimerization, DNA recogniti | 88.63 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.56 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.46 | |
| 2wbt_A | 129 | B-129; zinc finger; 2.70A {Sulfolobus virus 1} | 88.46 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 88.46 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 88.2 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 88.15 | |
| 1ubd_C | 124 | Protein (YY1 zinc finger domain); transcription in | 87.88 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 87.76 | |
| 2eps_A | 54 | POZ-, at HOOK-, and zinc finger-containing protein | 87.7 | |
| 2ghf_A | 102 | ZHX1, zinc fingers and homeoboxes protein 1; C2H2 | 87.36 | |
| 2j7j_A | 85 | Transcription factor IIIA; zinc finger module, alt | 87.32 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 87.2 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 87.02 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 87.02 | |
| 2i13_A | 190 | AART; DNA binding, zinc finger, DNA binding protei | 86.99 | |
| 2i13_A | 190 | AART; DNA binding, zinc finger, DNA binding protei | 86.92 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 86.85 | |
| 2gli_A | 155 | Protein (five-finger GLI); protein/DNA complex, tr | 86.78 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 86.76 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.68 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 86.49 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 86.33 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 86.28 | |
| 2jp9_A | 119 | Wilms tumor 1; DNA binding, nucleic acid recogniti | 86.15 | |
| 2jsp_A | 87 | Transcriptional regulatory protein ROS; prokaryoti | 86.14 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 86.1 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 86.08 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 86.04 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 85.99 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 85.96 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 85.64 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 85.63 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 85.23 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 85.22 | |
| 2eod_A | 66 | TNF receptor-associated factor 4; zinc binding, NF | 85.11 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 84.97 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 84.96 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 84.92 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 84.55 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 84.54 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 84.41 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 84.29 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 84.22 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 84.2 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 84.1 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 83.96 | |
| 2gli_A | 155 | Protein (five-finger GLI); protein/DNA complex, tr | 83.83 | |
| 1znf_A | 27 | 31ST zinc finger from XFIN; zinc finger DNA bindin | 83.82 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 83.65 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 83.27 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 82.61 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 82.47 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 82.32 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 82.29 | |
| 2epa_A | 72 | Krueppel-like factor 10; transforming growth facto | 82.2 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 81.99 | |
| 1tf6_A | 190 | Protein (transcription factor IIIA); complex (tran | 81.96 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 81.88 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 81.83 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 81.64 | |
| 1ubd_C | 124 | Protein (YY1 zinc finger domain); transcription in | 81.41 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 81.35 | |
| 1klr_A | 30 | Zinc finger Y-chromosomal protein; transcription; | 81.24 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 81.21 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 81.07 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 81.03 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 80.95 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 80.91 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 80.79 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 80.75 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=312.24 Aligned_cols=210 Identities=42% Similarity=0.703 Sum_probs=183.5
Q ss_pred hhhccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 256 KKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 256 ~~~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
+..+..||++|++++||++|++|.+|+.+|+++|.++...++|++|||||||||++++++|++|+++|+|||.|+ |+..
T Consensus 42 ~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~ 120 (376)
T 4hc4_A 42 RERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQ 120 (376)
T ss_dssp -------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHH
T ss_pred ccchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHH
Confidence 345778999999999999999999999999999999988889999999999999999999999999999999997 8899
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 336 ATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 336 A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
|+++++.||+ .++|++++++++++. + +++||+|||+||+++++++.++..++.++.|+||||
T Consensus 121 a~~~~~~n~~-------------~~~i~~i~~~~~~~~----l-pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~ 182 (376)
T 4hc4_A 121 AREVVRFNGL-------------EDRVHVLPGPVETVE----L-PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEG 182 (376)
T ss_dssp HHHHHHHTTC-------------TTTEEEEESCTTTCC----C-SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred HHHHHHHcCC-------------CceEEEEeeeeeeec----C-CccccEEEeecccccccccchhhhHHHHHHhhCCCC
Confidence 9999999998 368999999999984 3 478999999999999999999999999999999999
Q ss_pred cEEeccCceeEEeeecCCC--CCCCccccc---cCccccccchHHHhhhc--CCCeEeeeCCCcccccchhhhHhh
Q 010913 416 GAILPDTATMFVAGFGRGG--TSLPFWENV---YGFTMSCVGREVVQDAA--GIPIVDVVDDHDLVTDSVVLQVSV 484 (497)
Q Consensus 416 G~li~~~~~~~~~~~~~~~--~~~~fw~~v---~g~~~~~~~~~~~~~~~--~~p~v~~v~~~~l~t~~~~i~~~~ 484 (497)
|+++|+.++++++++.... ..+.||.++ |||+|+++........+ ..|.++.+++..++++|..+..|.
T Consensus 183 G~~iP~~atly~apie~~~l~~~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D 258 (376)
T 4hc4_A 183 GLLLPASAELFIVPISDQMLEWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLE 258 (376)
T ss_dssp EEEESCEEEEEEEEECCHHHHHHHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEE
T ss_pred ceECCccceEEEEEeccchhhhhhcchhccccccCcCchhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEE
Confidence 9999999999999997642 345689887 99999999877655433 467889999999999998876653
|
| >1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-31 Score=226.45 Aligned_cols=93 Identities=35% Similarity=0.757 Sum_probs=79.6
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
..+++||||+++|++++.+++||+++|+|||..++++++||||++||||||||+++.. ..||..
T Consensus 13 ~~~~~CLFCd~~~~s~~~~l~H~k~~H~FD~~~i~~~~~LDfY~~IKLINyIR~~~~~----------------~~~l~~ 76 (121)
T 1wir_A 13 RQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPT----------------VEYMNS 76 (121)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCCHHHHHHHHHHHHHTCCC----------------HHHHHS
T ss_pred CCceeEecCCCcccCHHHHHHHHHHhcCCCHHHHHHhcCCCceEEEEEEEeeecccCC----------------hhhhcc
Confidence 4689999999999999999999999999999999999999999999999999998532 235542
Q ss_pred hccCcccCCCCCCCCcccccccCcccc-ccccCC
Q 010913 124 AYNLKETKLRWDKEKYLKPFMQDDKLL-YSFGED 156 (497)
Q Consensus 124 ~~~~~~~~~~w~~d~yl~Pv~e~D~lL-~~~d~~ 156 (497)
... +..|++|+||+||||||+|| +++|+.
T Consensus 77 ---~~~-~~~Wddd~yL~PvledD~LL~~dledl 106 (121)
T 1wir_A 77 ---IYN-PVPWEKDEYLKPVLEDDLLLQFDVEDL 106 (121)
T ss_dssp ---CCS-SCTTCCHHHHSCSSSSCHHHHSCGGGG
T ss_pred ---ccC-CCCCCCCccccccCCCCceeeeecccc
Confidence 222 35899999999999999999 455543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=250.24 Aligned_cols=204 Identities=46% Similarity=0.881 Sum_probs=175.1
Q ss_pred hccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 010913 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 258 ~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~ 337 (497)
..+.||++|+.+++|..|++|..|+..|+++|..+..+.++++|||||||+|.+++.++++|+.+|+|||+|+ +++.|+
T Consensus 27 ~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~ 105 (349)
T 3q7e_A 27 SKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV 105 (349)
T ss_dssp ----------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH
T ss_pred hHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH
Confidence 4567999999999999999999999999999998877789999999999999999999999888999999995 999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 338 ~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
++++.+++ .+++++++++++++ +++.++||+|+++++++++.++.++..++.++.++|||||+
T Consensus 106 ~~~~~~~~-------------~~~v~~~~~d~~~~----~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~ 168 (349)
T 3q7e_A 106 KIVKANKL-------------DHVVTIIKGKVEEV----ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL 168 (349)
T ss_dssp HHHHHTTC-------------TTTEEEEESCTTTC----CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEE
T ss_pred HHHHHcCC-------------CCcEEEEECcHHHc----cCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCE
Confidence 99999988 35799999999987 36778999999999999999999999999999999999999
Q ss_pred EeccCceeEEeeecCC---CCCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHh
Q 010913 418 ILPDTATMFVAGFGRG---GTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVS 483 (497)
Q Consensus 418 li~~~~~~~~~~~~~~---~~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~ 483 (497)
++|+..+++..++... .....||.++|||+|+++.... +..|.++.+++..++++++.+..+
T Consensus 169 li~~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~----~~~p~v~~~~~~~~~~~~~~~~~~ 233 (349)
T 3q7e_A 169 IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVA----IKEPLVDVVDPKQLVTNACLIKEV 233 (349)
T ss_dssp EESCEEEEEEEEECCHHHHHHHTGGGGCBTTBCCGGGHHHH----HTSCEEECCCGGGEEEEEEEEEEE
T ss_pred EccccceEEEeeecChhhhhhhhcccccccCcchHHHhHhh----hcCcEEEEEChhhEecccEEEEEE
Confidence 9999999998887654 2356799999999999987664 455899999999999999877654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=243.62 Aligned_cols=207 Identities=42% Similarity=0.818 Sum_probs=179.2
Q ss_pred hhhccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 256 KKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 256 ~~~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
...+..||++|+.+++|..|++|..|+..|+++|.......++.+|||||||+|.+++.++++|+.+|+|+|+|+ +++.
T Consensus 23 ~~~d~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~ 101 (340)
T 2fyt_A 23 EDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQ 101 (340)
T ss_dssp -------CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHH
T ss_pred ccchhhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHH
Confidence 345667999999999999999999999999999999988889999999999999999999999888999999997 9999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 336 ATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 336 A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
|+++++.+++ .++++++.+|+.++ +++.++||+|++++|++++.++.++..++.++.++||||
T Consensus 102 a~~~~~~~~~-------------~~~i~~~~~d~~~~----~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg 164 (340)
T 2fyt_A 102 AMDIIRLNKL-------------EDTITLIKGKIEEV----HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG 164 (340)
T ss_dssp HHHHHHHTTC-------------TTTEEEEESCTTTS----CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHcCC-------------CCcEEEEEeeHHHh----cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCC
Confidence 9999999987 35899999999987 366789999999999999999999999999999999999
Q ss_pred cEEeccCceeEEeeecCC---CCCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHhh
Q 010913 416 GAILPDTATMFVAGFGRG---GTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSV 484 (497)
Q Consensus 416 G~li~~~~~~~~~~~~~~---~~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~ 484 (497)
|.++|+.++++..++... .....||.+++||+++.+.+.. +..|.++.+++..++++|..+..+.
T Consensus 165 G~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~----~~~~~v~~~~~~~~ls~p~~~~~~d 232 (340)
T 2fyt_A 165 GSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAV----IPEAVVEVLDPKTLISEPCGIKHID 232 (340)
T ss_dssp EEEESCEEEEEEEEECCHHHHHHHTGGGGCBTTBCCGGGHHHH----TTBCEEECCCGGGBCBCCEEEEEEE
T ss_pred cEEEcccceEEEEEecchhHhhhhhcccccccCcChHHHHHhh----hcCcEEEEechhhcccCCEEEEEEE
Confidence 999999999988887643 2446789999999999887654 4567899999999999998887665
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=242.03 Aligned_cols=202 Identities=44% Similarity=0.798 Sum_probs=178.5
Q ss_pred cccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 010913 260 ESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 260 ~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~ 339 (497)
+.||++|+.+++|..|++|..|+..|+++|.......++.+|||||||+|.+++.++++|+.+|+|+|+| .+++.|+++
T Consensus 1 d~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~ 79 (328)
T 1g6q_1 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKEL 79 (328)
T ss_dssp CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHH
T ss_pred CchhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHH
Confidence 3699999999999999999999999999998877778899999999999999999999988899999999 599999999
Q ss_pred HHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 340 AKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 340 ~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.+++ .++|+++.+++.++. ++.++||+|+++++++++.++.++..++.++.++|||||.++
T Consensus 80 ~~~~~~-------------~~~i~~~~~d~~~~~----~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 80 VELNGF-------------SDKITLLRGKLEDVH----LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp HHHTTC-------------TTTEEEEESCTTTSC----CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred HHHcCC-------------CCCEEEEECchhhcc----CCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 999987 358999999999873 566899999999999999999999999999999999999999
Q ss_pred ccCceeEEeeecCC---CCCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHh
Q 010913 420 PDTATMFVAGFGRG---GTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVS 483 (497)
Q Consensus 420 ~~~~~~~~~~~~~~---~~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~ 483 (497)
|+.++++...+... ...+.+|.+++||+++.+.+.. ...|.++.+++..++++|..+..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~gf~~~~~~~~~----~~~~~v~~~~~~~~ls~~~~~~~~ 205 (328)
T 1g6q_1 143 PDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLV----LHEPIVDTVERNNVNTTSDKLIEF 205 (328)
T ss_dssp SCEEEEEEEEECCHHHHHHHHHHTTCBTTBCCTTHHHHH----TTSCEEECCCGGGBCBCCEEEEEE
T ss_pred EeeceEEEEEecCchhhhhhhcccccccCcChHHHhhhh----hcCCeEEEeccceeecCCEEEEEE
Confidence 99999888877643 2334689999999999887665 355799999999999999877655
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=240.29 Aligned_cols=208 Identities=36% Similarity=0.633 Sum_probs=182.1
Q ss_pred hccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 010913 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 258 ~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~ 337 (497)
..+.||++|+.+..|..|++|..|+..|.++|..+....++++|||||||+|.+++.++++|+.+|+|||+| .|++.|+
T Consensus 24 ~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~ 102 (376)
T 3r0q_C 24 DYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR 102 (376)
T ss_dssp ----CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH
Confidence 457899999999999999999999999999999998889999999999999999999999998899999999 8999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 338 ~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
++++.+++ .++++++++|++++. ++ ++||+|+++++++++.++.++..++.++.++|||||+
T Consensus 103 ~~~~~~~~-------------~~~v~~~~~d~~~~~----~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 164 (376)
T 3r0q_C 103 ALVKANNL-------------DHIVEVIEGSVEDIS----LP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGV 164 (376)
T ss_dssp HHHHHTTC-------------TTTEEEEESCGGGCC----CS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEE
T ss_pred HHHHHcCC-------------CCeEEEEECchhhcC----cC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeE
Confidence 99999988 357999999999874 44 8999999999999999999999999999999999999
Q ss_pred EeccCceeEEeeecCCCC---CC----------Ccc---ccccCccccccchHHHhh----hcCCCeEeeeCCCcccccc
Q 010913 418 ILPDTATMFVAGFGRGGT---SL----------PFW---ENVYGFTMSCVGREVVQD----AAGIPIVDVVDDHDLVTDS 477 (497)
Q Consensus 418 li~~~~~~~~~~~~~~~~---~~----------~fw---~~v~g~~~~~~~~~~~~~----~~~~p~v~~v~~~~l~t~~ 477 (497)
++++..+.+..+...... .. .|| .++||++++.+...+..+ ....|.++++.+..++++|
T Consensus 165 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~ 244 (376)
T 3r0q_C 165 MYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTP 244 (376)
T ss_dssp EESSEEEEEEEEECCTHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCC
T ss_pred EEEecCeEEEEeecchHHhhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCC
Confidence 999999999888765421 11 578 789999999998875433 4588999999999999999
Q ss_pred hhhhHhh
Q 010913 478 VVLQVSV 484 (497)
Q Consensus 478 ~~i~~~~ 484 (497)
+.+..+.
T Consensus 245 ~~~~~~d 251 (376)
T 3r0q_C 245 TIVKEMD 251 (376)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 8876554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=214.55 Aligned_cols=194 Identities=38% Similarity=0.647 Sum_probs=165.2
Q ss_pred ccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 010913 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 259 ~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~ 338 (497)
.+.||+.|..+.+|..|++|..|+..|.++|+......++.+|||||||+|.+++.++++|+.+|+|||+|+ +++.|++
T Consensus 12 ~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~ 90 (348)
T 2y1w_A 12 AVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEV 90 (348)
T ss_dssp HHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHH
Confidence 456999999999999999999999999999999988889999999999999999999999888999999997 8899999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 339 ~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
+++.+++ .++++++.++++++. + +++||+|+|+++++++..+.. ...+..+.++|||||.+
T Consensus 91 ~~~~~~l-------------~~~v~~~~~d~~~~~----~-~~~~D~Ivs~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l 151 (348)
T 2y1w_A 91 LVKSNNL-------------TDRIVVIPGKVEEVS----L-PEQVDIIISEPMGYMLFNERM-LESYLHAKKYLKPSGNM 151 (348)
T ss_dssp HHHHTTC-------------TTTEEEEESCTTTCC----C-SSCEEEEEECCCBTTBTTTSH-HHHHHHGGGGEEEEEEE
T ss_pred HHHHcCC-------------CCcEEEEEcchhhCC----C-CCceeEEEEeCchhcCChHHH-HHHHHHHHhhcCCCeEE
Confidence 9999987 358999999999863 3 368999999988777665544 44666788999999999
Q ss_pred eccCceeEEeeecCCC------CCCCcc--ccccCccccccchHHHhhhcCCCeEeeeCCCc
Q 010913 419 LPDTATMFVAGFGRGG------TSLPFW--ENVYGFTMSCVGREVVQDAAGIPIVDVVDDHD 472 (497)
Q Consensus 419 i~~~~~~~~~~~~~~~------~~~~fw--~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~ 472 (497)
++..++.+..++.... ....|| ..++|++++.+......++|..|++++++...
T Consensus 152 i~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d~~~~~~ 213 (348)
T 2y1w_A 152 FPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRI 213 (348)
T ss_dssp ESCEEEEEEEEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEECCCGGG
T ss_pred EEecCcEEEEEecchHHhhhhccccCcccccccCcccHHHhhhHHHhhhccCCeEEeECCee
Confidence 9999998887765431 123567 46789999999999888899999999877543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=212.35 Aligned_cols=184 Identities=21% Similarity=0.217 Sum_probs=148.9
Q ss_pred hhHHhhhcchhhhHHHHHHHHhC--------CCCCCCCEEEEEcCCCCHhHHHHHHcCCC-----EEEEEeCCHHHHHHH
Q 010913 270 GIHREMISDKVRTDSYRQAILEN--------PSLMKGAVVMDIGCGTGILSLFAAQAGAS-----RVIAVEASEKMAAVA 336 (497)
Q Consensus 270 ~ih~~ml~d~~r~~~y~~~i~~~--------~~~~~~~~VLDvGCGtG~ls~~la~~G~~-----~V~gvD~S~~~i~~A 336 (497)
..++-+-+|++|++.|.++|.+. ....++.+|||||||+|.++++++++|+. +|+|||.|+ ++..|
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a 400 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVT 400 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHH
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHH
Confidence 46777889999999999999752 22345679999999999997777766442 789999998 66689
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCc
Q 010913 337 TQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (497)
Q Consensus 337 ~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG 416 (497)
++..+.|++ .++|++++|+++++. .++++|+|||+|||+++.++.++ ++|.++.|+|||||
T Consensus 401 ~~~v~~N~~-------------~dkVtVI~gd~eev~-----LPEKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgG 461 (637)
T 4gqb_A 401 LENWQFEEW-------------GSQVTVVSSDMREWV-----APEKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDG 461 (637)
T ss_dssp HHHHHHHTT-------------GGGEEEEESCTTTCC-----CSSCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEE
T ss_pred HHHHHhccC-------------CCeEEEEeCcceecc-----CCcccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCc
Confidence 999999998 469999999999985 35799999999999999999988 69999999999999
Q ss_pred EEeccCceeEEeeecCCC---CCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHh
Q 010913 417 AILPDTATMFVAGFGRGG---TSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVS 483 (497)
Q Consensus 417 ~li~~~~~~~~~~~~~~~---~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~ 483 (497)
+++|+.++++++++.... ....+|...+++.+ .+..|.+..+.+..++++|..+..|
T Consensus 462 imiPs~atlyiapi~~~~l~~e~~~~~~~~~~~~~----------~~~~p~Vv~~~~~~~Ls~p~~~~~f 521 (637)
T 4gqb_A 462 VSIPGEYTSFLAPISSSKLYNEVRACREKDRDPEA----------QFEMPYVVRLHNFHQLSAPQPCFTF 521 (637)
T ss_dssp EEESCEEEEEEEEEECHHHHHHHHTTCCTTSCTTG----------GGGSCEECBCCSCEECSCCEEEEEE
T ss_pred EEccccceEEEEEecCHHHHHHHHhcccccccchh----------hcCCcEEEEecCccccCCCEEEEEE
Confidence 999999999999987642 22345665555533 3455778778888888888766544
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=203.36 Aligned_cols=199 Identities=38% Similarity=0.649 Sum_probs=165.0
Q ss_pred ccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 010913 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 259 ~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~ 338 (497)
...|+..|+....+..|+.+..+++.|.+.++......++.+|||||||+|.+++.+++.|+.+|+|+|+|+ +++.|++
T Consensus 120 ~~~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~ 198 (480)
T 3b3j_A 120 AVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEV 198 (480)
T ss_dssp CCEEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHH
T ss_pred hhhHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHH
Confidence 346777788777799999999999999999999887778999999999999999999999888999999999 9999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 339 ~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
+++.+|+ .++|+++.+|+.++. + +++||+|+|+++++++..+..+. .+..+.++|||||.+
T Consensus 199 ~~~~~gl-------------~~~v~~~~~d~~~~~----~-~~~fD~Ivs~~~~~~~~~e~~~~-~l~~~~~~LkpgG~l 259 (480)
T 3b3j_A 199 LVKSNNL-------------TDRIVVIPGKVEEVS----L-PEQVDIIISEPMGYMLFNERMLE-SYLHAKKYLKPSGNM 259 (480)
T ss_dssp HHHHTTC-------------TTTEEEEESCTTTCC----C-SSCEEEEECCCCHHHHTCHHHHH-HHHHGGGGEEEEEEE
T ss_pred HHHHcCC-------------CCcEEEEECchhhCc----c-CCCeEEEEEeCchHhcCcHHHHH-HHHHHHHhcCCCCEE
Confidence 9999987 358999999998863 3 36899999998888776665555 555788999999999
Q ss_pred eccCceeEEeeecCCCC------CCCcc--ccccCccccccchHHHhhhcCCCeEeeeCCCcccccc
Q 010913 419 LPDTATMFVAGFGRGGT------SLPFW--ENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDS 477 (497)
Q Consensus 419 i~~~~~~~~~~~~~~~~------~~~fw--~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~ 477 (497)
++...+.+..++..... ...|| ..++|++++.+......++|..|++++++.....+.+
T Consensus 260 i~~~~~~~~~pi~~~~l~~e~~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~t 326 (480)
T 3b3j_A 260 FPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKS 326 (480)
T ss_dssp ESCEEEEEEEEECCHHHHHHHHHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEECCCCSTTBCSCC
T ss_pred EEEeceeeeeccCchHHHHHHhhccCccccccCCCcChhhhhhHHHHhccCCcEEEEeecccccchh
Confidence 99998888777653311 12467 3678999999998888888999999987766555443
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-21 Score=210.61 Aligned_cols=192 Identities=15% Similarity=0.175 Sum_probs=150.0
Q ss_pred hhHHhhhcchhhhHHHHHHHHhCCC-CC----CCCEEEEEcCCCCHhHHHHHHcC--C------------CEEEEEeCCH
Q 010913 270 GIHREMISDKVRTDSYRQAILENPS-LM----KGAVVMDIGCGTGILSLFAAQAG--A------------SRVIAVEASE 330 (497)
Q Consensus 270 ~ih~~ml~d~~r~~~y~~~i~~~~~-~~----~~~~VLDvGCGtG~ls~~la~~G--~------------~~V~gvD~S~ 330 (497)
..++.|.+|.+|+..|+++|..+.. .. ++++|||||||+|++++++++++ + .+|+|||.|+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp 456 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP 456 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence 4789999999999999999988742 22 35799999999999987654442 2 3999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC-----CCceeEEEeccccccccChhhHHHHH
Q 010913 331 KMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ-----PHSVDVLVSEWMGYCLLYESMLSSVL 405 (497)
Q Consensus 331 ~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~-----~~~fDvIvs~~~~~~l~~~~~l~~vL 405 (497)
.++..++.+. .||+ .++|++++++++++. ++ ++++|+|||+|||+++.++-+ ..+|
T Consensus 457 ~A~~~l~~~~-~Ng~-------------~d~VtVI~gd~eev~----lp~~~~~~ekVDIIVSElmGsfl~nEL~-pe~L 517 (745)
T 3ua3_A 457 NAIVTLKYMN-VRTW-------------KRRVTIIESDMRSLP----GIAKDRGFEQPDIIVSELLGSFGDNELS-PECL 517 (745)
T ss_dssp HHHHHHHHHH-HHTT-------------TTCSEEEESCGGGHH----HHHHHTTCCCCSEEEECCCBTTBGGGSH-HHHH
T ss_pred HHHHHHHHHH-hcCC-------------CCeEEEEeCchhhcc----cccccCCCCcccEEEEeccccccchhcc-HHHH
Confidence 7775445444 4777 468999999999985 33 689999999999999877744 4477
Q ss_pred HHHhccccCCcEEeccCceeEEeeecCCCCCCCccccccCccccccc------------------------hHHHhhhcC
Q 010913 406 FARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVG------------------------REVVQDAAG 461 (497)
Q Consensus 406 ~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~~~~------------------------~~~~~~~~~ 461 (497)
..+.++|||||+++|+.++.+++++..+. +|.++++++++.+. ......++.
T Consensus 518 d~v~r~Lkp~Gi~iP~~~t~ylaPi~~~~----l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e 593 (745)
T 3ua3_A 518 DGVTGFLKPTTISIPQKYTSYVKPIMSTH----IHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMD 593 (745)
T ss_dssp HTTGGGSCTTCEEESCEEEEEEEEEECHH----HHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHS
T ss_pred HHHHHhCCCCcEEECCccEEEEEEecCHH----HHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999999999999999997653 57777766543110 012445678
Q ss_pred CCeEeeeCCCccccc-chhhhHhh
Q 010913 462 IPIVDVVDDHDLVTD-SVVLQVSV 484 (497)
Q Consensus 462 ~p~v~~v~~~~l~t~-~~~i~~~~ 484 (497)
.|.|..+.+..++++ |..+.+|.
T Consensus 594 ~PyVv~l~~~~~Ls~~pq~vftFd 617 (745)
T 3ua3_A 594 QIYVVYLSKYIPLAETTKPVFTFE 617 (745)
T ss_dssp SCEEECCCSCEESSSSCEEEEEEE
T ss_pred ccEEEeeccceecCCCCceEEEEE
Confidence 999999999999999 77766554
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=148.49 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=112.8
Q ss_pred HHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPS-LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
...++.... +.++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|++++...++ .+++++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~v~~ 100 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-------------QNRVTG 100 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-------------TTTEEE
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CcCcEE
Confidence 334444444 678999999999999999999999666999999999999999999999887 357999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCcccccc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVY 444 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~ 444 (497)
+.+|+.++ +++.++||+|++..+. .+. ++..++..+.++|||||.+++...+.... ........+|...+
T Consensus 101 ~~~d~~~~----~~~~~~fD~i~~~~~~---~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~ 170 (267)
T 3kkz_A 101 IVGSMDDL----PFRNEELDLIWSEGAI---YNI-GFERGLNEWRKYLKKGGYLAVSECSWFTD--ERPAEINDFWMDAY 170 (267)
T ss_dssp EECCTTSC----CCCTTCEEEEEESSCG---GGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSS--CCCHHHHHHHHHHC
T ss_pred EEcChhhC----CCCCCCEEEEEEcCCc---eec-CHHHHHHHHHHHcCCCCEEEEEEeeecCC--CChHHHHHHHHHhC
Confidence 99999886 4678899999987643 333 67889999999999999999665432110 01111122453333
Q ss_pred C--ccccccchHHHhhhcCCC
Q 010913 445 G--FTMSCVGREVVQDAAGIP 463 (497)
Q Consensus 445 g--~~~~~~~~~~~~~~~~~p 463 (497)
. .....+...+...+|...
T Consensus 171 ~~~~~~~~~~~~l~~aGf~~v 191 (267)
T 3kkz_A 171 PEIDTIPNQVAKIHKAGYLPV 191 (267)
T ss_dssp TTCEEHHHHHHHHHHTTEEEE
T ss_pred CCCCCHHHHHHHHHHCCCEEE
Confidence 2 234456666666665533
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=149.83 Aligned_cols=107 Identities=21% Similarity=0.333 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-C--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-G--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
+.+|.+|||||||||.++..+++. + ..+|+|||+|+.|++.|++++...+. ..+|+++++|+.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-------------~~~v~~~~~D~~~ 134 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-------------PTPVDVIEGDIRD 134 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-------------SSCEEEEESCTTT
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-------------CceEEEeeccccc
Confidence 468999999999999999999986 1 13899999999999999999988776 3589999999988
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ +.++||+|++....+++ ...+...+|.+++++|||||.+++.
T Consensus 135 ~------~~~~~d~v~~~~~l~~~-~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 135 I------AIENASMVVLNFTLQFL-EPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp C------CCCSEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c------cccccccceeeeeeeec-CchhHhHHHHHHHHHcCCCcEEEEE
Confidence 6 23569999976533322 3445678999999999999999854
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=147.91 Aligned_cols=114 Identities=23% Similarity=0.369 Sum_probs=96.9
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....+.......++.+|||||||+|.++..+++.|..+|+|+|+|+.+++.|+++.. ..++.+
T Consensus 32 ~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-----------------~~~~~~ 94 (253)
T 3g5l_A 32 EWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-----------------SPVVCY 94 (253)
T ss_dssp HHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-----------------CTTEEE
T ss_pred hHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-----------------cCCeEE
Confidence 344566666667899999999999999999999987799999999999999998753 147999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+|+.++ +++.++||+|++.. ++.+..++..+|.++.++|||||.+++..
T Consensus 95 ~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 95 EQKAIEDI----AIEPDAYNVVLSSL---ALHYIASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EECCGGGC----CCCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcchhhC----CCCCCCeEEEEEch---hhhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999886 46789999999765 55555788999999999999999999754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=146.89 Aligned_cols=152 Identities=20% Similarity=0.314 Sum_probs=111.1
Q ss_pred HHHHhCC-CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENP-SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~-~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..++... .+.++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|++++..+++ .++++++
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~ 101 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-------------ADRVKGI 101 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-------------TTTEEEE
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-------------CCceEEE
Confidence 3344443 5678899999999999999999999545999999999999999999999887 3579999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCccccccC
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYG 445 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~g 445 (497)
++|+.++ +++.++||+|++.. ++.+. ++..++..+.++|||||.+++...+.... ........+|...+.
T Consensus 102 ~~d~~~~----~~~~~~fD~v~~~~---~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~ 171 (257)
T 3f4k_A 102 TGSMDNL----PFQNEELDLIWSEG---AIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTS--ERPAEIEDFWMDAYP 171 (257)
T ss_dssp ECCTTSC----SSCTTCEEEEEEES---CSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSS--CCCHHHHHHHHHHCT
T ss_pred ECChhhC----CCCCCCEEEEEecC---hHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCC--CChHHHHHHHHHhCC
Confidence 9999876 47788999999875 34444 67889999999999999999665432110 011111234544332
Q ss_pred --ccccccchHHHhhhcC
Q 010913 446 --FTMSCVGREVVQDAAG 461 (497)
Q Consensus 446 --~~~~~~~~~~~~~~~~ 461 (497)
.....+...+..++|.
T Consensus 172 ~~~~~~~~~~~l~~aGf~ 189 (257)
T 3f4k_A 172 EISVIPTCIDKMERAGYT 189 (257)
T ss_dssp TCCBHHHHHHHHHHTTEE
T ss_pred CCCCHHHHHHHHHHCCCe
Confidence 2344556666666654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=146.62 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.....++....+.++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.|++++...|+ .+++
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-------------~~~v 88 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGV-------------SERV 88 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTC-------------TTTE
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-------------Ccce
Confidence 34455566667788999999999999999999987 55 999999999999999999988887 2589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++++|+.++. + .++||+|++.. ++.+..++..+|.++.++|||||.+++..
T Consensus 89 ~~~~~d~~~~~----~-~~~fD~V~~~~---~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 89 HFIHNDAAGYV----A-NEKCDVAACVG---ATWIAGGFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp EEEESCCTTCC----C-SSCEEEEEEES---CGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEEECChHhCC----c-CCCCCEEEECC---ChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence 99999998863 4 78999999754 44455678899999999999999998644
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=152.27 Aligned_cols=153 Identities=20% Similarity=0.177 Sum_probs=110.3
Q ss_pred cccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 010913 260 ESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 260 ~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~ 339 (497)
..||+.+..--+...+.....++..+++.+...+...++.+|||||||+|.++..+++.|+ +|+|+|+|+.|++.|+++
T Consensus 20 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~ 98 (293)
T 3thr_A 20 DQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKE 98 (293)
T ss_dssp CTTTTCHHHHHHHHHHTCCSCBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred hhhcCchHHHHHHHHHhcCcchHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHh
Confidence 3455443332233333334567778888887776667889999999999999999999988 999999999999999988
Q ss_pred HHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEec-cccccccC----hhhHHHHHHHHhccccC
Q 010913 340 AKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE-WMGYCLLY----ESMLSSVLFARDQWLKP 414 (497)
Q Consensus 340 ~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~-~~~~~l~~----~~~l~~vL~~~~r~Lkp 414 (497)
+...+.. ....++.+..+++..+...+ ++.++||+|++. .+...+.. ...+..++.++.++|||
T Consensus 99 ~~~~~~~----------~~~~~~~~~~~d~~~~~~~~-~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp 167 (293)
T 3thr_A 99 RWNRRKE----------PAFDKWVIEEANWLTLDKDV-PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 167 (293)
T ss_dssp HHHTTTS----------HHHHTCEEEECCGGGHHHHS-CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE
T ss_pred hhhcccc----------cccceeeEeecChhhCcccc-ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC
Confidence 7544321 00136789999988763211 567899999985 32222222 24489999999999999
Q ss_pred CcEEeccCce
Q 010913 415 GGAILPDTAT 424 (497)
Q Consensus 415 gG~li~~~~~ 424 (497)
||.+++...+
T Consensus 168 gG~l~~~~~~ 177 (293)
T 3thr_A 168 GGLLVIDHRN 177 (293)
T ss_dssp EEEEEEEEEC
T ss_pred CeEEEEEeCC
Confidence 9999966543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=148.42 Aligned_cols=106 Identities=22% Similarity=0.254 Sum_probs=92.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
...++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...++ .++.++.+|++++
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--------------~~v~~~~~d~~~l- 97 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH--------------QQVEYVQGDAEQM- 97 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC--------------CSEEEEECCC-CC-
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCC--------------CceEEEEecHHhC-
Confidence 456889999999999999999999876 999999999999999999988876 5799999999886
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++++||+|++.. ++.+..++..+|.++.++|||||.+++.
T Consensus 98 ---~~~~~~fD~V~~~~---~l~~~~d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 98 ---PFTDERFHIVTCRI---AAHHFPNPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp ---CSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---CCCCCCEEEEEEhh---hhHhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 47789999999765 5556678889999999999999999853
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=139.46 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++.+++ +++++++++...+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~--------------~~v~~~~~~~~~l~- 83 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGI--------------ENTELILDGHENLD- 83 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTC--------------CCEEEEESCGGGGG-
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEeCcHHHHH-
Confidence 46789999999999999999999854 999999999999999999988876 58999998888764
Q ss_pred ccCCCCCceeEEEecccccccc-------ChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLL-------YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~-------~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+.+++||+|+++. ++... .......++.++.++|||||.+++.
T Consensus 84 --~~~~~~fD~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 84 --HYVREPIRAAIFNL-GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp --GTCCSCEEEEEEEE-C-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --hhccCCcCEEEEeC-CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 24577899999763 32221 3355667889999999999999843
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-16 Score=145.51 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=110.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|++++..+++.. ....+++++.+|+...
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~~~~~v~~~~~d~~~~-- 96 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE---------MQRKRISLFQSSLVYR-- 96 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCH---------HHHTTEEEEECCSSSC--
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhcccc---------ccCcceEEEeCccccc--
Confidence 4678999999999999999999853 599999999999999999987766510 0002799999998665
Q ss_pred ccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCceeEEeeecC-CCCCCCccccccCcccccc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTATMFVAGFGR-GGTSLPFWENVYGFTMSCV 451 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~-~~~~~~fw~~v~g~~~~~~ 451 (497)
+.+.++||+|++.. ++.+.. .+..++..+.++|||||+++......+...+.. ...........+++....+
T Consensus 97 --~~~~~~fD~V~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (219)
T 3jwg_A 97 --DKRFSGYDAATVIE---VIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEF 171 (219)
T ss_dssp --CGGGTTCSEEEEES---CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHH
T ss_pred --ccccCCCCEEEEHH---HHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHH
Confidence 35568999999765 344434 457899999999999997763322221111110 0001111223333444445
Q ss_pred c----hHHHhhhcCCCeEeeeCCCcccccchhhhHhh
Q 010913 452 G----REVVQDAAGIPIVDVVDDHDLVTDSVVLQVSV 484 (497)
Q Consensus 452 ~----~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~ 484 (497)
. ..+...++......+-+....+..+..+..|.
T Consensus 172 ~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~ 208 (219)
T 3jwg_A 172 QTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFT 208 (219)
T ss_dssp HHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEE
T ss_pred HHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEe
Confidence 4 44445555444444444444455555544443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=146.03 Aligned_cols=119 Identities=20% Similarity=0.246 Sum_probs=101.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.++....+.++.+|||||||+|.++..+++....+|+|+|+|+.+++.|++++...++ .+++.
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~~~ 114 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-------------ANRVT 114 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-------------TTTEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CcceE
Confidence 45566667777788999999999999999999986334999999999999999999988887 35799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+|+.++ +++.++||+|++.. ++.+..++..+|.++.++|||||.+++..
T Consensus 115 ~~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 115 FSYADAMDL----PFEDASFDAVWALE---SLHHMPDRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp EEECCTTSC----CSCTTCEEEEEEES---CTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEECccccC----CCCCCCccEEEEec---hhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 999999886 47788999999765 55566778999999999999999998654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-16 Score=145.82 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+++.. ....++.++.+|+...
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~~~~~v~~~~~d~~~~-- 96 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR---------NQWERLQLIQGALTYQ-- 96 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCH---------HHHTTEEEEECCTTSC--
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCc---------ccCcceEEEeCCcccc--
Confidence 567899999999999999999984 3699999999999999999988777610 0012799999998655
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+.++||+|++..+.+.+ ....+..++..+.++|||||+++..
T Consensus 97 --~~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 97 --DKRFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp --CGGGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred --cccCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 3456799999976533332 3335589999999999999987743
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=140.63 Aligned_cols=108 Identities=22% Similarity=0.333 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.+++.+++.|+.+|+|+|+|+.+++.|++++..+++ ++++++++|+.++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~v~~~~~d~~~~~~- 107 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL--------------SGATLRRGAVAAVVA- 107 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC--------------SCEEEEESCHHHHHH-
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--------------CceEEEEccHHHHHh-
Confidence 57899999999999999988888888999999999999999999998876 589999999988741
Q ss_pred cCCCCCceeEEEeccccccccC-hhhHHHHHHHHhc--cccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLY-ESMLSSVLFARDQ--WLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~-~~~l~~vL~~~~r--~LkpgG~li~~~ 422 (497)
.++.++||+|++++. +.+ ...+..++..+.+ +|+|||++++..
T Consensus 108 -~~~~~~fD~i~~~~p---~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 108 -AGTTSPVDLVLADPP---YNVDSADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp -HCCSSCCSEEEECCC---TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred -hccCCCccEEEECCC---CCcchhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 134689999998763 222 3677889999988 999999999644
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-16 Score=145.34 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=85.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+.++.+|||+|||+|..+..+++.|. +|+|||+|+.|++.|+++........ ...........+++++++|+.++.
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHIT--SQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEE--EETTEEEEECSSSEEEEECCSSST
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccc--cccccccccCCccEEEECccccCC
Confidence 456789999999999999999999988 99999999999999998754210000 000000000247999999998863
Q ss_pred cccCCCC-CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQP-HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~-~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++. ++||+|++....+. .+..+...++.++.++|||||.++
T Consensus 96 ----~~~~~~fD~v~~~~~l~~-l~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 96 ----ARDIGHCAAFYDRAAMIA-LPADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp ----HHHHHSEEEEEEESCGGG-SCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ----cccCCCEEEEEECcchhh-CCHHHHHHHHHHHHHHcCCCcEEE
Confidence 333 68999998643322 345567789999999999999844
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=140.41 Aligned_cols=116 Identities=23% Similarity=0.383 Sum_probs=95.8
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.++......++ +|||||||+|.++..+++.+..+|+|+|+|+.+++.|++++...++ .+++++
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------~~~~~~ 97 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-------------NDRIQI 97 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-------------TTTEEE
T ss_pred HHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-------------cCceEE
Confidence 33444444444455 9999999999999999998334999999999999999999998887 358999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++|+.++ +++.++||+|++.. ++.+..++..++.++.++|||||.+++.
T Consensus 98 ~~~d~~~~----~~~~~~~D~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 98 VQGDVHNI----PIEDNYADLIVSRG---SVFFWEDVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp EECBTTBC----SSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCHHHC----CCCcccccEEEECc---hHhhccCHHHHHHHHHHhCCCCCEEEEE
Confidence 99999886 47788999999765 4555578899999999999999999854
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=146.17 Aligned_cols=112 Identities=15% Similarity=-0.022 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh----------CCCCCCCCCCCCCCCCCCceEEE
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD----------NDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~----------~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.++.+|||+|||+|..+..+|+.|. +|+|||+|+.|++.|++.... +++. .+ .....+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~i~~~ 138 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAK----VF---KSSSGSISLY 138 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCE----EE---EETTSSEEEE
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhccccccccccccccccc----cc---ccCCCceEEE
Confidence 5788999999999999999999998 999999999999999766421 0000 00 0012579999
Q ss_pred ecchhhcccccCCC-CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++|+.++. .+ .++||+|++......+ +..+...++..+.++|||||++++
T Consensus 139 ~~D~~~l~----~~~~~~FD~V~~~~~l~~l-~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 139 CCSIFDLP----RANIGKFDRIWDRGALVAI-NPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp ESCTTTGG----GGCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred ECccccCC----cccCCCEEEEEEhhhhhhC-CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99999874 33 3799999986533333 456778899999999999999863
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=147.48 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=94.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+.++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|++++...++ .++++++.+|+.++
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGL-------------ADNITVKYGSFLEI 144 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTC-------------TTTEEEEECCTTSC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCC-------------CcceEEEEcCcccC
Confidence 6678899999999999999999988 77 999999999999999999988776 35899999999886
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++.++||+|++.. ++.+..++..+|.++.++|||||.+++..
T Consensus 145 ----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 145 ----PCEDNSYDFIWSQD---AFLHSPDKLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp ----SSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CCCCCCEeEEEecc---hhhhcCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 47788999999765 45555678999999999999999998554
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-15 Score=146.94 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=97.5
Q ss_pred HHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+.++..+. +.++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|++++..+++ .+++++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~v~~ 171 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRI-------------DDHVRS 171 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTC-------------TTTEEE
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCC-------------CCceEE
Confidence 45666665 788999999999999999999998 76 899999999999999999999987 358999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+|+.++ +++.++||+|++.. ++.+. ++..+|.++.++|||||.+++.+
T Consensus 172 ~~~d~~~~----~~~~~~fD~V~~~~---~l~~~-~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 172 RVCNMLDT----PFDKGAVTASWNNE---STMYV-DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EECCTTSC----CCCTTCEEEEEEES---CGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECChhcC----CCCCCCEeEEEECC---chhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999886 47788999999765 33344 38899999999999999998543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=139.91 Aligned_cols=117 Identities=28% Similarity=0.431 Sum_probs=94.6
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
..++......++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++...++ ++.+++
T Consensus 31 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~---------------~v~~~~ 94 (252)
T 1wzn_A 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL---------------KIEFLQ 94 (252)
T ss_dssp HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---------------CCEEEE
T ss_pred HHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC---------------ceEEEE
Confidence 3344444446778999999999999999999987 999999999999999999887764 689999
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+|+.++. + +++||+|++............+..++..+.++|||||.++++..+
T Consensus 95 ~d~~~~~----~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 95 GDVLEIA----F-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SCGGGCC----C-CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChhhcc----c-CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 9998863 3 468999997532233345567889999999999999999976543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=145.57 Aligned_cols=107 Identities=23% Similarity=0.283 Sum_probs=92.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++...++ ..+++++.+|+.++.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~--- 130 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGV-------------SDNMQFIHCAAQDVA--- 130 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CC-------------GGGEEEEESCGGGTG---
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CcceEEEEcCHHHhh---
Confidence 478999999999999999999977 999999999999999999988876 258999999999874
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+++.++||+|++.. ++.+..++..+|.++.++|||||.+++...
T Consensus 131 ~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 131 SHLETPVDLILFHA---VLEWVADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGCSSCEEEEEEES---CGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhcCCCceEEEECc---hhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 35678999999765 555567788999999999999999986543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=140.84 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+...+.......++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++... ++++
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------------~~~~ 100 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW----------------SHIS 100 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC----------------SSEE
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC----------------CCeE
Confidence 4455555555667789999999999999999999986 9999999999999999886543 3799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++++|+.++. +.++||+|++..+.+.+.....+..++.++.++|||||.+++.+
T Consensus 101 ~~~~d~~~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 101 WAATDILQFS-----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp EEECCTTTCC-----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcchhhCC-----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999998872 57899999987654444444555788999999999999998543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=144.17 Aligned_cols=119 Identities=24% Similarity=0.195 Sum_probs=98.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.++....+.++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|++++...++ .+++
T Consensus 59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~v 124 (302)
T 3hem_A 59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDS-------------PRRK 124 (302)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCC-------------SSCE
T ss_pred HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CCce
Confidence 34456677777889999999999999999999998 85 999999999999999999999887 3589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccC------hhhHHHHHHHHhccccCCcEEeccCc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY------ESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~------~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+++.+|+.++ .++||+|++..+...+.. ......++.++.++|||||.+++...
T Consensus 125 ~~~~~d~~~~-------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 125 EVRIQGWEEF-------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp EEEECCGGGC-------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred EEEECCHHHc-------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 9999999763 578999998764433322 15568999999999999999995443
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=143.08 Aligned_cols=111 Identities=23% Similarity=0.306 Sum_probs=95.3
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++....+.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++ .++.++.+|
T Consensus 13 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--------------~~v~~~~~d 77 (239)
T 1xxl_A 13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV--------------ENVRFQQGT 77 (239)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC--------------CSEEEEECB
T ss_pred HHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC--------------CCeEEEecc
Confidence 33444567899999999999999999999876 999999999999999999988776 579999999
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+ +++.++||+|++.. ++.+..++..++.++.++|||||.+++.
T Consensus 78 ~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 78 AESL----PFPDDSFDIITCRY---AAHHFSDVRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp TTBC----CSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccC----CCCCCcEEEEEECC---chhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 9886 47788999999764 4555567889999999999999999853
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=143.95 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=92.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||||||+|..+..+++.+..+|+|||+|+.+++.|+++....+. ++.++.+++..+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~---------------~~~~~~~~a~~~~-- 121 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH---------------KVIPLKGLWEDVA-- 121 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS---------------EEEEEESCHHHHG--
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC---------------ceEEEeehHHhhc--
Confidence 57899999999999999999988555899999999999999999877764 7899999998764
Q ss_pred cCCCCCceeEEEeccc--cccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWM--GYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~--~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+++.++||.|+...+ .+.+.+..++..++.++.|+|||||+|++.
T Consensus 122 ~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 122 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 2467889999986532 345667778899999999999999999854
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-15 Score=140.77 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=94.9
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
++....+.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+++ .++.++.
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~ 94 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL--------------KNVEVLK 94 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC--------------TTEEEEE
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEe
Confidence 3333456788999999999999999999985 34999999999999999999988876 4799999
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+|+.++ +++.++||+|++.. ++.+..++..++.++.++|||||.+++.
T Consensus 95 ~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 142 (219)
T 3dh0_A 95 SEENKI----PLPDNTVDFIFMAF---TFHELSEPLKFLEELKRVAKPFAYLAII 142 (219)
T ss_dssp CBTTBC----SSCSSCEEEEEEES---CGGGCSSHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccC----CCCCCCeeEEEeeh---hhhhcCCHHHHHHHHHHHhCCCeEEEEE
Confidence 999886 46788999999765 4555567889999999999999999854
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=142.81 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=100.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.+.+.+.....+.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+++ .++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~ 89 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--------------KNV 89 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--------------CSE
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CCc
Confidence 455666666777889999999999999999999983 45999999999999999999988886 579
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++.+|+.++ +++.++||+|++.. ++.+..++..++..+.++|||||.+++..
T Consensus 90 ~~~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 90 KFLQANIFSL----PFEDSSFDHIFVCF---VLEHLQSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp EEEECCGGGC----CSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcccccC----CCCCCCeeEEEEec---hhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999986 47788999999765 55566777899999999999999998543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=139.40 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+...++......++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|++++... .++.
T Consensus 80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------~~~~ 143 (254)
T 1xtp_A 80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----------------PVGK 143 (254)
T ss_dssp HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----------------SEEE
T ss_pred HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC----------------CceE
Confidence 344556666666788999999999999999999887668999999999999999886432 3799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+++.++ +++.++||+|++.. ++.+. .++..+|..+.++|||||.+++..
T Consensus 144 ~~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 144 FILASMETA----TLPPNTYDLIVIQW---TAIYLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp EEESCGGGC----CCCSSCEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEccHHHC----CCCCCCeEEEEEcc---hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999886 46778999999765 44444 568899999999999999999654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=146.50 Aligned_cols=105 Identities=23% Similarity=0.238 Sum_probs=85.1
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+.+.|.... ..+.+|||||||+|.++..+++.|. +|+|||+|+.|++.|++. .+|.+
T Consensus 29 l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~--------------------~~v~~ 85 (257)
T 4hg2_A 29 LFRWLGEVA--PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH--------------------PRVTY 85 (257)
T ss_dssp HHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC--------------------TTEEE
T ss_pred HHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc--------------------CCcee
Confidence 334444433 3467999999999999999999986 999999999999866532 47999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++++++ ++++++||+|++.. ++++. ++..++.++.|+|||||+|++
T Consensus 86 ~~~~~e~~----~~~~~sfD~v~~~~---~~h~~-~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 86 AVAPAEDT----GLPPASVDVAIAAQ---AMHWF-DLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp EECCTTCC----CCCSSCEEEEEECS---CCTTC-CHHHHHHHHHHHEEEEEEEEE
T ss_pred ehhhhhhh----cccCCcccEEEEee---ehhHh-hHHHHHHHHHHHcCCCCEEEE
Confidence 99999987 58899999999754 44333 577899999999999999874
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=134.14 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=89.9
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
....++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++..+++ .++.++.+|+.++
T Consensus 28 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~~d~~~~ 92 (199)
T 2xvm_A 28 VKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL--------------DNLHTRVVDLNNL 92 (199)
T ss_dssp TTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC--------------TTEEEEECCGGGC
T ss_pred hhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCC--------------CCcEEEEcchhhC
Confidence 3445778999999999999999999977 999999999999999999887775 4799999999886
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
. + .++||+|++..+.+.+ ....+..++..+.++|||||.+++
T Consensus 93 ~----~-~~~~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 93 T----F-DRQYDFILSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp C----C-CCCEEEEEEESCGGGS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred C----C-CCCceEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3 5 7899999987533322 234788999999999999999763
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=139.77 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++...++ ++.++++|+.++.
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~---------------~~~~~~~d~~~~~-- 97 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL---------------KPRLACQDISNLN-- 97 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC---------------CCEEECCCGGGCC--
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC---------------CeEEEecccccCC--
Confidence 3788999999999999999999986 899999999999999999877654 6899999998863
Q ss_pred cCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++ ++||+|++.. ....+....++..+|..+.++|||||.++++.
T Consensus 98 --~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 98 --IN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp --CS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --cc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 44 8899999764 43333344788999999999999999999644
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=147.93 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=103.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCC--------CCCCCCCC-------CC
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD--------RPQSEGNI-------NN 358 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~--------~~~~~~~~-------~~ 358 (497)
...+|.+|||||||+|+++..+++.|+.+|+|+|+|+.|++.|+++++.+..... .......+ ..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567899999999999999888888887899999999999999998765421000 00000000 00
Q ss_pred CCceE-EEecchhhcccccCC---CCCceeEEEeccccccc-cChhhHHHHHHHHhccccCCcEEeccCc---eeEEeee
Q 010913 359 AGKME-VVQGMVEELGESMQI---QPHSVDVLVSEWMGYCL-LYESMLSSVLFARDQWLKPGGAILPDTA---TMFVAGF 430 (497)
Q Consensus 359 ~~~i~-~i~gd~~~l~~~l~~---~~~~fDvIvs~~~~~~l-~~~~~l~~vL~~~~r~LkpgG~li~~~~---~~~~~~~ 430 (497)
..++. ++++|+.+.. ++ ..++||+|++..+.+++ .+..++..++.++.++|||||.|++... +.+. .
T Consensus 132 ~~~i~~~~~~D~~~~~---~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~--~ 206 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGN---PLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM--V 206 (263)
T ss_dssp HHHEEEEEECCTTSSS---TTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE--E
T ss_pred HhhhheEEeccccCCC---CCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce--e
Confidence 11344 8899988742 22 25689999987643322 3346778899999999999999996531 1110 0
Q ss_pred cCCCCCCCccccccCccccccchHHHhhhcCCCeEee
Q 010913 431 GRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDV 467 (497)
Q Consensus 431 ~~~~~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~ 467 (497)
+. .. | ..+.+....+...+...+|....+..
T Consensus 207 g~----~~-~-~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 207 GK----RE-F-SCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp TT----EE-E-ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CC----eE-e-eccccCHHHHHHHHHHCCCEEEEEee
Confidence 00 00 1 12234555677777777765433333
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=140.59 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=97.7
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.++....+.++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.|++++...++ ..++
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~-------------~~~~ 116 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSEN-------------LRSK 116 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCC-------------CSCE
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CCCe
Confidence 45566777777888999999999999999999954 77 999999999999999999988776 3589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEeccCce
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.++.+|+.++ + ++||+|++.. ++.+. .++..++.++.++|||||.+++....
T Consensus 117 ~~~~~d~~~~------~-~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 117 RVLLAGWEQF------D-EPVDRIVSIG---AFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp EEEESCGGGC------C-CCCSEEEEES---CGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EEEECChhhC------C-CCeeEEEEeC---chhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9999999764 3 7899999765 44444 57889999999999999999965443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=143.08 Aligned_cols=113 Identities=21% Similarity=0.216 Sum_probs=94.5
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||||||+|.++..+++.|..+|+|+|+|+.+++.|++++...++ ..++.++++|+.++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~- 127 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-------------RFKVFFRAQDSYGRH- 127 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-------------SSEEEEEESCTTTSC-
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-------------CccEEEEECCccccc-
Confidence 467899999999999999999988877999999999999999999987765 257999999998863
Q ss_pred ccCC-CCCceeEEEecccc-ccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQI-QPHSVDVLVSEWMG-YCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~~-~~~~fDvIvs~~~~-~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+ +.++||+|++.... +.+.+..++..+|.++.++|||||.+++..++
T Consensus 128 ---~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 128 ---MDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp ---CCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ---cCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 5 57899999986532 22245678899999999999999999965543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-15 Score=140.58 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++....+ .++.++++++.++.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---------------~~v~~~~~d~~~~~-- 121 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---------------HKVIPLKGLWEDVA-- 121 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---------------SEEEEEESCHHHHG--
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC---------------CCeEEEecCHHHhh--
Confidence 5788999999999999999988766699999999999999999887665 37999999999872
Q ss_pred cCCCCCceeEEEe-ccc-cccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVS-EWM-GYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs-~~~-~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.+++.++||+|++ .+. .....+...+..++.++.++|||||++++..
T Consensus 122 ~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 1367889999998 322 1222334556688999999999999998543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=135.30 Aligned_cols=120 Identities=23% Similarity=0.333 Sum_probs=98.7
Q ss_pred hhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 281 r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
+...+.+.+.... .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..++ .
T Consensus 24 ~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---------------~ 85 (227)
T 1ve3_A 24 RIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE---------------S 85 (227)
T ss_dssp HHHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------C
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---------------C
Confidence 3456666776655 3488999999999999999999987 99999999999999999987765 3
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+++++.+|+.++ +++.++||+|++... ..+.+..++..++..+.++|||||.+++...
T Consensus 86 ~~~~~~~d~~~~----~~~~~~~D~v~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 86 NVEFIVGDARKL----SFEDKTFDYVIFIDS-IVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCEEEECCTTSC----CSCTTCEEEEEEESC-GGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEECchhcC----CCCCCcEEEEEEcCc-hHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 789999999886 366789999998753 1245667788999999999999999985433
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=134.50 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=101.8
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++. .++.++.+|+.++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------------------~~~~~~~~d~~~~~---- 97 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-------------------PSVTFHHGTITDLS---- 97 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-------------------TTSEEECCCGGGGG----
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-------------------CCCeEEeCcccccc----
Confidence 78999999999999999999987 8999999999999998772 47899999998873
Q ss_pred CCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEeccCceeEE-eeecCCCCCCCccccccCccccccchH
Q 010913 378 IQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPDTATMFV-AGFGRGGTSLPFWENVYGFTMSCVGRE 454 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~~~~~~~-~~~~~~~~~~~fw~~v~g~~~~~~~~~ 454 (497)
++.++||+|++.. ++.+. .++..+|.++.++|||||.+++....... ..+.. .+...+.+....+...
T Consensus 98 ~~~~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 168 (203)
T 3h2b_A 98 DSPKRWAGLLAWY---SLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYH------PVATAYRWPLPELAQA 168 (203)
T ss_dssp GSCCCEEEEEEES---SSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECC------SSSCEEECCHHHHHHH
T ss_pred cCCCCeEEEEehh---hHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhc------hhhhhccCCHHHHHHH
Confidence 6788999999765 44444 47899999999999999999854322110 01100 1112223456667777
Q ss_pred HHhhhcCCCeEeeeC
Q 010913 455 VVQDAAGIPIVDVVD 469 (497)
Q Consensus 455 ~~~~~~~~p~v~~v~ 469 (497)
+...+|....+....
T Consensus 169 l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 169 LETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHTTEEEEEEEECT
T ss_pred HHHCCCcEEEEEecC
Confidence 777776544444333
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=141.05 Aligned_cols=113 Identities=20% Similarity=0.330 Sum_probs=95.4
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.++....+.++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.|++++... .++++
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------------~~~~~ 106 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN----------------NKIIF 106 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC----------------TTEEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC----------------CCeEE
Confidence 455666777788999999999999999999998 66 9999999999999998775332 47999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+|+.++ +++.++||+|++.. ++.+. .++..++.++.++|||||.+++..
T Consensus 107 ~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 107 EANDILTK----EFPENNFDLIYSRD---AILALSLENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp EECCTTTC----CCCTTCEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECccccC----CCCCCcEEEEeHHH---HHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999886 47789999999765 45555 788999999999999999998554
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-15 Score=138.02 Aligned_cols=111 Identities=19% Similarity=0.201 Sum_probs=89.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||+|||+|.+++.+++.|+.+|+|+|+|+.+++.|++++..+++. .++++++.+|+.++..
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------~~~v~~~~~d~~~~~~-- 118 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS------------SEQAEVINQSSLDFLK-- 118 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC------------TTTEEEECSCHHHHTT--
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC------------ccceEEEECCHHHHHH--
Confidence 67899999999999999988888779999999999999999999988862 1479999999988631
Q ss_pred CCCCCc-eeEEEeccccccccChhhHHHHHHHH--hccccCCcEEeccCcee
Q 010913 377 QIQPHS-VDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPDTATM 425 (497)
Q Consensus 377 ~~~~~~-fDvIvs~~~~~~l~~~~~l~~vL~~~--~r~LkpgG~li~~~~~~ 425 (497)
.++.++ ||+|++++. | +......++..+ .++|||||.+++.....
T Consensus 119 ~~~~~~~fD~I~~~~~-~---~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 119 QPQNQPHFDVVFLDPP-F---HFNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp SCCSSCCEEEEEECCC-S---SSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred hhccCCCCCEEEECCC-C---CCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 123578 999998764 2 235667788888 77899999998655433
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-15 Score=138.41 Aligned_cols=118 Identities=23% Similarity=0.253 Sum_probs=93.7
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.+... +.++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|+++.... .++.
T Consensus 31 ~~~~~l~~~--~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~----------------~~i~ 92 (215)
T 2pxx_A 31 SFRALLEPE--LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV----------------PQLR 92 (215)
T ss_dssp HHHHHHGGG--CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC----------------TTCE
T ss_pred HHHHHHHHh--cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC----------------CCcE
Confidence 345555443 3678899999999999999999998768999999999999999886431 4789
Q ss_pred EEecchhhcccccCCCCCceeEEEecccccccc------------ChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL------------YESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~------------~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
++.+|+.++ +++.++||+|++..+...+. +...+..++.++.++|||||.+++...
T Consensus 93 ~~~~d~~~~----~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 93 WETMDVRKL----DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp EEECCTTSC----CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEcchhcC----CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 999999886 46778999999875433332 245678999999999999999985443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=134.18 Aligned_cols=113 Identities=20% Similarity=0.244 Sum_probs=91.8
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+..++....+.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++.+++ .+++++
T Consensus 43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~-------------~~~v~~ 108 (204)
T 3njr_A 43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGL-------------SPRMRA 108 (204)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-------------TTTEEE
T ss_pred HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCC-------------CCCEEE
Confidence 344455555677899999999999999999999955 999999999999999999999987 238999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+|+.+.. ....+||+|++.. .+ .+. ++..+.++|||||.+++...
T Consensus 109 ~~~d~~~~~----~~~~~~D~v~~~~---~~----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 109 VQGTAPAAL----ADLPLPEAVFIGG---GG----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp EESCTTGGG----TTSCCCSEEEECS---CC----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred EeCchhhhc----ccCCCCCEEEECC---cc----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 999998842 1235799999654 22 345 89999999999999985543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-15 Score=134.74 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|++++..+++ .++++++++|+.+...
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~d~~~~~~ 108 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-------------PEKFEVRKMDANRALE 108 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-------------GGGEEEEESCHHHHHH
T ss_pred hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CcceEEEECcHHHHHH
Confidence 357889999999999999999988877999999999999999999988876 2479999999988532
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHH--hccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~--~r~LkpgG~li~~~~ 423 (497)
.++...++||+|++++. |. ......++..+ .++|+|||.+++..+
T Consensus 109 ~~~~~~~~fD~i~~~~~-~~---~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 109 QFYEEKLQFDLVLLDPP-YA---KQEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp HHHHTTCCEEEEEECCC-GG---GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHhcCCCCCEEEECCC-CC---chhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 11223678999998764 22 23345566666 899999999985543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.6e-15 Score=146.10 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch------
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV------ 369 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~------ 369 (497)
.++.+|||||||+|..+..+++.|..+|+|||+|+.|++.|+++....+.... ...-++.+.++++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~--------~~~~~~~f~~~d~~~d~~~ 118 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK--------TKYYKFDYIQETIRSDTFV 118 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC------------CCCEEEEEECCTTSSSHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc--------ccccccchhhhhcccchhh
Confidence 35789999999999877767777655999999999999999998866543100 0000367878877
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+++.. +++.++||+|+|..+.+.+........+|.++.++|||||.+++.+.+
T Consensus 119 ~~l~~--~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 119 SSVRE--VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp HHHHT--TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhc--cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 44321 245689999998653332223335689999999999999999966543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=132.88 Aligned_cols=115 Identities=22% Similarity=0.205 Sum_probs=94.8
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
..+..++....+.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.+++ +++
T Consensus 27 ~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~v 92 (204)
T 3e05_A 27 EVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA--------------RNV 92 (204)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC--------------TTE
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CcE
Confidence 344556666677889999999999999999999985 46999999999999999999988876 589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++.+|+.+.. ....+||+|++... + ..+..++..+.++|||||.+++..
T Consensus 93 ~~~~~d~~~~~----~~~~~~D~i~~~~~---~---~~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 93 TLVEAFAPEGL----DDLPDPDRVFIGGS---G---GMLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp EEEECCTTTTC----TTSCCCSEEEESCC---T---TCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEeCChhhhh----hcCCCCCEEEECCC---C---cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999997652 22367999997642 2 267789999999999999998543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-14 Score=137.44 Aligned_cols=114 Identities=26% Similarity=0.280 Sum_probs=93.3
Q ss_pred HHHHHHh-CCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILE-NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~-~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
..+.+.. ...+.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++ ..+. .++.
T Consensus 26 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~~~--------------~~~~ 89 (263)
T 2yqz_A 26 IATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AGVD--------------RKVQ 89 (263)
T ss_dssp HHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TTSC--------------TTEE
T ss_pred HHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hccC--------------CceE
Confidence 3444433 34557789999999999999999999876 9999999999999999887 2222 5899
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.++ +++.++||+|++.. ++.+..++..++.++.++|||||.+++.
T Consensus 90 ~~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 90 VVQADARAI----PLPDESVHGVIVVH---LWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEESCTTSC----CSCTTCEEEEEEES---CGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcccccC----CCCCCCeeEEEECC---chhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 999999876 46788999999765 5555567889999999999999999865
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=136.49 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=87.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||+|||+|.+++.+++.|+.+|+|+|+|+.+++.|++++..+++ .+++++++|+.++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~--------------~~v~~~~~D~~~~~--- 116 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA--------------GNARVVNSNAMSFL--- 116 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC--------------CSEEEECSCHHHHH---
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEECCHHHHH---
Confidence 6789999999999999998888877999999999999999999998886 58999999998852
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHh--ccccCCcEEeccCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD--QWLKPGGAILPDTA 423 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~--r~LkpgG~li~~~~ 423 (497)
+...++||+|++.+. |. ......++..+. ++|+|||++++...
T Consensus 117 ~~~~~~fD~V~~~~p-~~---~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 117 AQKGTPHNIVFVDPP-FR---RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SSCCCCEEEEEECCS-SS---TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhcCCCCCEEEECCC-CC---CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 345678999998764 22 345566777775 46999999986544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-14 Score=140.80 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.++....+.++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|++++...++ .+++
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~v 142 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDT-------------NRSR 142 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCC-------------SSCE
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CCce
Confidence 45566777777888999999999999999999988 87 999999999999999999988877 2579
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEeccCc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.++.+|+.++ + ++||+|++.. ++.+. .++..++.++.++|||||.+++...
T Consensus 143 ~~~~~d~~~~------~-~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 143 QVLLQGWEDF------A-EPVDRIVSIE---AFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp EEEESCGGGC------C-CCCSEEEEES---CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEECChHHC------C-CCcCEEEEeC---hHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999998764 2 7899999765 34443 6788999999999999999996543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.2e-15 Score=133.64 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|+++++.+++ .+++.++.+|+.+..
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~d~~~~~- 94 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-------------ENRFTLLKMEAERAI- 94 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-------------GGGEEEECSCHHHHH-
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCceEEEECcHHHhH-
Confidence 467889999999999999999998777999999999999999999998887 247999999998842
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHh--ccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD--QWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~--r~LkpgG~li~~~ 422 (497)
+...++||+|++++.. +......++..+. ++|+|||.+++..
T Consensus 95 --~~~~~~fD~i~~~~~~----~~~~~~~~~~~l~~~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 95 --DCLTGRFDLVFLDPPY----AKETIVATIEALAAKNLLSEQVMVVCET 138 (177)
T ss_dssp --HHBCSCEEEEEECCSS----HHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --HhhcCCCCEEEECCCC----CcchHHHHHHHHHhCCCcCCCcEEEEEE
Confidence 2234679999987531 1234556666666 9999999998544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=138.97 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|++++...+. .++.++.+++.++.
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~~d~~~~~-- 141 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--------------RVRNYFCCGLQDFT-- 141 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--------------GEEEEEECCGGGCC--
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC--------------ceEEEEEcChhhcC--
Confidence 36899999999999999999988766999999999999999998765532 47899999998863
Q ss_pred cCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.++||+|++.. ++.+..+ +..+|.++.++|||||.+++..
T Consensus 142 --~~~~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 142 --PEPDSYDVIWIQW---VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp --CCSSCEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCCCEEEEEEcc---hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 5667899999765 4444444 5689999999999999998543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=134.65 Aligned_cols=113 Identities=22% Similarity=0.264 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++...++. .....++.++.+++..+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~~d~~~~--- 95 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLN---------QKTGGKAEFKVENASSL--- 95 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCC---------SSSSCEEEEEECCTTSC---
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCc---------cccCcceEEEEeccccc---
Confidence 4788999999999999999999977 9999999999999999998776652 12234789999999886
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++.++||+|++....+.+........++..+.++|||||.+++..
T Consensus 96 -~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 96 -SFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp -CSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 4678899999986644444333444589999999999999998543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=138.10 Aligned_cols=112 Identities=28% Similarity=0.401 Sum_probs=92.2
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.+.......++.+|||||||+|.++..+++.|..+|+|+|+|+.+++.|+++... .++.++.+
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------------~~~~~~~~ 96 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-----------------TGITYERA 96 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-----------------SSEEEEEC
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-----------------CCceEEEc
Confidence 3444455568899999999999999999999777999999999999998876421 36899999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
|+..+ +++.++||+|++.. ++.+..++..+|..+.++|||||.+++...
T Consensus 97 d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 97 DLDKL----HLPQDSFDLAYSSL---ALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CGGGC----CCCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Chhhc----cCCCCCceEEEEec---cccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 99886 36678999999754 555556788999999999999999996543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=129.49 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=94.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.++......++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++.+ .++++
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~------------~~~~~ 106 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDN------------YDIRV 106 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTT------------SCEEE
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHcCCCc------------cceEE
Confidence 344455555666889999999999999999999854 99999999999999999998887620 14999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccC-hhhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.+. ++.++||+|++..+ +.+ ...+..++..+.++|+|||.+++.
T Consensus 107 ~~~d~~~~-----~~~~~~D~v~~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 107 VHSDLYEN-----VKDRKYNKIITNPP---IRAGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EECSTTTT-----CTTSCEEEEEECCC---STTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECchhcc-----cccCCceEEEECCC---cccchhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99998874 45678999998652 223 466788999999999999999844
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=138.87 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++.. .++.++++++.++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------------------~~v~~~~~d~~~~--- 98 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK------------------DGITYIHSRFEDA--- 98 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC------------------SCEEEEESCGGGC---
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhh------------------CCeEEEEccHHHc---
Confidence 4678999999999999999999887 89999999999999988741 2689999999886
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHh-ccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD-QWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~-r~LkpgG~li~~~~ 423 (497)
.++++||+|++.. ++.|..++..+|.++. ++|||||.+++...
T Consensus 99 --~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 99 --QLPRRYDNIVLTH---VLEHIDDPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp --CCSSCEEEEEEES---CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred --CcCCcccEEEEhh---HHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3578999999755 5666678899999999 99999999996543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=136.34 Aligned_cols=142 Identities=16% Similarity=0.080 Sum_probs=102.0
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++...+. ..++.++.+|+.++.
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~--- 128 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPK-------------AEYFSFVKEDVFTWR--- 128 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGG-------------GGGEEEECCCTTTCC---
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCC-------------CcceEEEECchhcCC---
Confidence 446999999999999999988776 899999999999999999876543 257999999998863
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCccccccCccccccchHHH
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVV 456 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~~~~~~~~ 456 (497)
+..+||+|++..+.+.+ ...++..++..+.++|||||.+++...... .... ...+.+....+...+.
T Consensus 129 --~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~l~ 195 (235)
T 3lcc_A 129 --PTELFDLIFDYVFFCAI-EPEMRPAWAKSMYELLKPDGELITLMYPIT-----DHVG-----GPPYKVDVSTFEEVLV 195 (235)
T ss_dssp --CSSCEEEEEEESSTTTS-CGGGHHHHHHHHHHHEEEEEEEEEEECCCS-----CCCS-----CSSCCCCHHHHHHHHG
T ss_pred --CCCCeeEEEEChhhhcC-CHHHHHHHHHHHHHHCCCCcEEEEEEeccc-----ccCC-----CCCccCCHHHHHHHHH
Confidence 45699999976533222 234888999999999999999985322111 1000 1123355666777776
Q ss_pred hhhcCCCeEeee
Q 010913 457 QDAAGIPIVDVV 468 (497)
Q Consensus 457 ~~~~~~p~v~~v 468 (497)
..+|....+..+
T Consensus 196 ~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 196 PIGFKAVSVEEN 207 (235)
T ss_dssp GGTEEEEEEEEC
T ss_pred HcCCeEEEEEec
Confidence 666654333333
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=131.52 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=90.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++..+++ .++++++++|+.++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~ 86 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-------------IDRVTLIKDGHQNM 86 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-------------GGGEEEECSCGGGG
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCCeEEEECCHHHH
Confidence 467899999999999999999987 345999999999999999999999886 25899999999887
Q ss_pred ccccCCCCCceeEEEeccccc-------cccChhhHHHHHHHHhccccCCcEEecc
Q 010913 373 GESMQIQPHSVDVLVSEWMGY-------CLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~-------~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
. .+.+++||+|+++. .+ .+........++..+.++|||||.+++.
T Consensus 87 ~---~~~~~~fD~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~ 138 (197)
T 3eey_A 87 D---KYIDCPVKAVMFNL-GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138 (197)
T ss_dssp G---GTCCSCEEEEEEEE-SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred h---hhccCCceEEEEcC-CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence 4 24568999999874 22 1222345667999999999999999843
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=134.34 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=88.6
Q ss_pred HHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPS-LMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+.+..... ..++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++... .++.+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------~~~~~ 96 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN----------------LKVKY 96 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC----------------TTEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC----------------CCEEE
Confidence 44444443 5678999999999999999999982 349999999999999999886433 37999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+|+.++. ++ ++||+|++.. ++.+..+ ...++.++.++|||||.+++..
T Consensus 97 ~~~d~~~~~----~~-~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 97 IEADYSKYD----FE-EKYDMVVSAL---SIHHLEDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp EESCTTTCC----CC-SCEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCchhccC----CC-CCceEEEEeC---ccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999998873 44 8999999865 3333333 3469999999999999998543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=132.25 Aligned_cols=103 Identities=28% Similarity=0.370 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++ +|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++...++ ++.++.+|+.++
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---------------~~~~~~~d~~~~--- 88 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV---------------KITTVQSNLADF--- 88 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC---------------CEEEECCBTTTB---
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC---------------ceEEEEcChhhc---
Confidence 456 999999999999999999987 999999999999999999877654 789999999886
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++.++||+|++.. ...+..++..++..+.++|||||.+++..
T Consensus 89 -~~~~~~fD~v~~~~---~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 89 -DIVADAWEGIVSIF---CHLPSSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp -SCCTTTCSEEEEEC---CCCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred -CCCcCCccEEEEEh---hcCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 36678999999743 33355778999999999999999998544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=134.96 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCCHhH-HHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILS-LFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls-~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..++.+|||+|||+|.++ ..+++.|. +|+|+|+|+.+++.|++++..++ .++.++.+|+.++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---------------~~~~~~~~d~~~~- 83 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN---------------FKLNISKGDIRKL- 83 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT---------------CCCCEEECCTTSC-
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CceEEEECchhhC-
Confidence 356889999999999984 44555566 99999999999999999987654 3688999999886
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+++.++||+|++....+.+ ...++..++.++.++|||||.+++...
T Consensus 84 ---~~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 84 ---PFKDESMSFVYSYGTIFHM-RKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp ---CSCTTCEEEEEECSCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CCCCCceeEEEEcChHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4678899999976533222 237788999999999999999996543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-14 Score=139.36 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=95.3
Q ss_pred HHHHHHhC-CCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 285 YRQAILEN-PSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 285 y~~~i~~~-~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
+...+... ..+.++.+|||||||+|.++..+++. + ..+|+|+|+|+.+++.|++++...+. +
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~ 73 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---------------D 73 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS---------------E
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC---------------c
Confidence 33444433 35678899999999999999999987 3 25999999999999999999876653 8
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
++++++|+.++. + +++||+|++.. ++.+..++..++.++.++|||||.+++..+.
T Consensus 74 v~~~~~d~~~~~----~-~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 74 SEFLEGDATEIE----L-NDKYDIAICHA---FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEEESCTTTCC----C-SSCEEEEEEES---CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred eEEEEcchhhcC----c-CCCeeEEEECC---hhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999999999863 4 56999999765 4556677889999999999999999965544
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=137.43 Aligned_cols=113 Identities=18% Similarity=0.307 Sum_probs=91.9
Q ss_pred CCCC-CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLM-KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~-~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.... ++.+|||+|||+|.+++.+++.+..+|+|+|+++.+++.|++++..+++ .++++++++|+.+
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-------------~~~v~~~~~D~~~ 110 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL-------------EDQIEIIEYDLKK 110 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC-------------TTTEEEECSCGGG
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-------------cccEEEEECcHHH
Confidence 3456 7899999999999999999999666999999999999999999999988 3579999999998
Q ss_pred cccccCCCCCceeEEEeccccccc-----cC------------hhhHHHHHHHHhccccCCcEEec
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCL-----LY------------ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l-----~~------------~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.. .++.++||+|++++..+.. .. ...+..++..+.++|||||.+++
T Consensus 111 ~~~--~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 111 ITD--LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp GGG--TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhh--hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 742 2457899999998642221 00 13456799999999999999985
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-14 Score=133.76 Aligned_cols=116 Identities=26% Similarity=0.351 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
..+.+.+.... .++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|++++..++ .++
T Consensus 21 ~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~---------------~~~ 81 (243)
T 3d2l_A 21 PEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN---------------RHV 81 (243)
T ss_dssp HHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT---------------CCC
T ss_pred HHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC---------------Cce
Confidence 34555565543 45789999999999999999987 499999999999999999987765 378
Q ss_pred EEEecchhhcccccCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++.+|+.++. ++ ++||+|++.. ....+.....+..++..+.++|||||.++++.
T Consensus 82 ~~~~~d~~~~~----~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 82 DFWVQDMRELE----LP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp EEEECCGGGCC----CS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcChhhcC----CC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99999998863 43 7899999753 33334455778899999999999999999654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=142.15 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=93.2
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....++.... .++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++...++.. ..++++
T Consensus 71 ~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~-----------~~~v~~ 137 (299)
T 3g2m_A 71 EAREFATRTG-PVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADV-----------RDRCTL 137 (299)
T ss_dssp HHHHHHHHHC-CCCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHH-----------HTTEEE
T ss_pred HHHHHHHhhC-CCCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhccccc-----------ccceEE
Confidence 3344444333 3345999999999999999999986 89999999999999999987765200 037999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+++|+.++. + +++||+|++...........++..+|.++.++|||||.|++...+
T Consensus 138 ~~~d~~~~~----~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 138 VQGDMSAFA----L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp EECBTTBCC----C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EeCchhcCC----c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 999999873 4 689999986433233334456789999999999999999965543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=132.29 Aligned_cols=137 Identities=23% Similarity=0.227 Sum_probs=99.6
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++ ++.++.+++..+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--------------------~~~~~~~d~~~~-- 97 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL--------------------GRPVRTMLFHQL-- 97 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH--------------------TSCCEECCGGGC--
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc--------------------CCceEEeeeccC--
Confidence 35788999999999999999999987 9999999999999999886 346778888876
Q ss_pred ccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCccccccCccccccc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVG 452 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~~~~ 452 (497)
+ +.++||+|++.. ++.+. .++..+|.++.++|||||.+++..... .......+......+....+.
T Consensus 98 --~-~~~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 165 (211)
T 3e23_A 98 --D-AIDAYDAVWAHA---CLLHVPRDELADVLKLIWRALKPGGLFYASYKSG------EGEGRDKLARYYNYPSEEWLR 165 (211)
T ss_dssp --C-CCSCEEEEEECS---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC------SSCEECTTSCEECCCCHHHHH
T ss_pred --C-CCCcEEEEEecC---chhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC------CcccccccchhccCCCHHHHH
Confidence 3 678999999865 33333 478899999999999999998643211 111111111222235666777
Q ss_pred hHHHhhh-cCCCeEe
Q 010913 453 REVVQDA-AGIPIVD 466 (497)
Q Consensus 453 ~~~~~~~-~~~p~v~ 466 (497)
..+...+ |....+.
T Consensus 166 ~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 166 ARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHCCCSEEEEE
T ss_pred HHHHhCCCcEEEEEE
Confidence 7777776 6544333
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=139.36 Aligned_cols=103 Identities=20% Similarity=0.295 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++..+++ +++++.+|+.++.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~---------------~~~~~~~d~~~~~-- 180 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL---------------NISTALYDINAAN-- 180 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---------------CEEEEECCGGGCC--
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC---------------ceEEEEecccccc--
Confidence 3788999999999999999999988 999999999999999999988875 7999999998863
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+ .++||+|++..+.+.+ .......++..+.++|||||.+++
T Consensus 181 --~-~~~fD~i~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 181 --I-QENYDFIVSTVVFMFL-NRERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp --C-CSCEEEEEECSSGGGS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred --c-cCCccEEEEccchhhC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 7899999987644332 446678999999999999999773
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=129.15 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=90.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.++..++......++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++..+++ ..++
T Consensus 12 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~ 78 (178)
T 3hm2_A 12 HVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-------------SDRI 78 (178)
T ss_dssp HHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-------------TTSE
T ss_pred HHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-------------CCCE
Confidence 34455555556678899999999999999999988 445999999999999999999998887 2378
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+++.+. ++...++||+|++.. .+.+ ..++..+.++|||||.+++..
T Consensus 79 -~~~~d~~~~---~~~~~~~~D~i~~~~---~~~~----~~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 79 -AVQQGAPRA---FDDVPDNPDVIFIGG---GLTA----PGVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp -EEECCTTGG---GGGCCSCCSEEEECC----TTC----TTHHHHHHHTCCTTCEEEEEE
T ss_pred -EEecchHhh---hhccCCCCCEEEECC---cccH----HHHHHHHHHhcCCCCEEEEEe
Confidence 888887543 123337899999754 3333 568889999999999998543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=139.36 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=92.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCc
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQ--AGASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~--~G~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~ 361 (497)
+.+.|.... ..++.+|||||||+|.++..+++ .+..+|+|+|+|+.+++.|++++... +. ..+
T Consensus 25 ~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------------~~~ 90 (299)
T 3g5t_A 25 FYKMIDEYH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-------------YKN 90 (299)
T ss_dssp HHHHHHHHC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-------------CTT
T ss_pred HHHHHHHHh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-------------CCc
Confidence 334444432 25789999999999999999996 34569999999999999999998876 32 258
Q ss_pred eEEEecchhhcccccCCCC------CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQP------HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~------~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++++|++++. ++. ++||+|++.. ++.+. ++..++..+.++|||||.|++
T Consensus 91 v~~~~~d~~~~~----~~~~~~~~~~~fD~V~~~~---~l~~~-~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 91 VSFKISSSDDFK----FLGADSVDKQKIDMITAVE---CAHWF-DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEEECCTTCCG----GGCTTTTTSSCEEEEEEES---CGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEcCHHhCC----ccccccccCCCeeEEeHhh---HHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence 999999999874 444 7999999765 44444 889999999999999999986
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=137.75 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=91.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+.+.+.... .++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++. . ..++.+
T Consensus 43 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--~---------------~~~~~~ 102 (242)
T 3l8d_A 43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG--E---------------GPDLSF 102 (242)
T ss_dssp HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT--C---------------BTTEEE
T ss_pred HHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc--c---------------cCCceE
Confidence 344444433 4788999999999999999999987 9999999999999888763 1 257999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+|+.++ +++.++||+|++.. ++.+..++..++.++.++|+|||.+++..
T Consensus 103 ~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 103 IKGDLSSL----PFENEQFEAIMAIN---SLEWTEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp EECBTTBC----SSCTTCEEEEEEES---CTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcchhcC----CCCCCCccEEEEcC---hHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 99999986 47789999999754 56666788899999999999999998554
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=142.19 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHH--HcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAA--QAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 281 r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la--~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
|...++..+.. .+.++.+|||||||+|.++..++ ..+..+|+|+|+|+.+++.|++++...++
T Consensus 104 ~~~~~~~~l~~--~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------- 168 (305)
T 3ocj_A 104 RHGHFRRALQR--HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL------------- 168 (305)
T ss_dssp HHHHHHHHHHH--HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-------------
T ss_pred HHHHHHHHHHh--hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-------------
Confidence 33345555533 34678999999999999999985 33445999999999999999999988877
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++++++++|+.++ +++ ++||+|++..+.+.+........++.++.++|||||.+++..
T Consensus 169 ~~~v~~~~~d~~~~----~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 169 AGQITLHRQDAWKL----DTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp GGGEEEEECCGGGC----CCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCceEEEECchhcC----Ccc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 24799999999987 355 899999987644444444445568999999999999999644
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=131.93 Aligned_cols=97 Identities=28% Similarity=0.357 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||||||+|.++..+ |..+|+|+|+|+.+++.|+++. .++.++.+++.++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-------------------~~~~~~~~d~~~~---- 89 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-------------------PEATWVRAWGEAL---- 89 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-------------------TTSEEECCCTTSC----
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-------------------CCcEEEEcccccC----
Confidence 8899999999999998877 5558999999999999998874 2678999999876
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++.++||+|++.. ++.+..++..++.++.++|||||.+++..
T Consensus 90 ~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 90 PFPGESFDVVLLFT---TLEFVEDVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp CSCSSCEEEEEEES---CTTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEcC---hhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 46788999999654 66666788999999999999999998654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.3e-14 Score=137.47 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=87.0
Q ss_pred CCCCCCCCEEEEEcCCCCHhH-HHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGTGILS-LFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls-~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.+|.+|||||||+|.++ +.+|+. |+ +|+|||+|+.|++.|+++++..|+ ++++++++|+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl--------------~~v~~v~gDa 181 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGV--------------DGVNVITGDE 181 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTC--------------CSEEEEESCG
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCC--------------CCeEEEECch
Confidence 356789999999999998765 556665 65 999999999999999999988876 5899999999
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++ +.++||+|++... ..+...++.++.++|||||+|+...
T Consensus 182 ~~l------~d~~FDvV~~~a~------~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 182 TVI------DGLEFDVLMVAAL------AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp GGG------GGCCCSEEEECTT------CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhC------CCCCcCEEEECCC------ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 885 2578999996432 2567889999999999999999543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=132.19 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++ .+. .++.++.+|+.++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~--------------~~~~~~~~d~~~~-- 102 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL--------------DNVEFRQQDLFDW-- 102 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC--------------TTEEEEECCTTSC--
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC--------------CCeEEEecccccC--
Confidence 56778999999999999999999977 99999999999998887 333 4799999999875
Q ss_pred ccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
++.++||+|++.. ++.+... ...+|.++.++|||||.+++...
T Consensus 103 ---~~~~~~D~v~~~~---~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 103 ---TPDRQWDAVFFAH---WLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp ---CCSSCEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CCCCceeEEEEec---hhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4678999999765 4444334 58899999999999999986543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=132.16 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCC-CCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCG-TGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCG-tG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.++.+|||+||| +|.++..+++.+..+|+|+|+|+.+++.|++++..+++ +++++++|+..+.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------------~v~~~~~d~~~~~ 117 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS---------------NVRLVKSNGGIIK 117 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC---------------CCEEEECSSCSST
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC---------------CcEEEeCCchhhh
Confidence 4688999999999 99999999998334999999999999999999998875 7899999976543
Q ss_pred cccCCCCCceeEEEeccccccc----------------cChhhHHHHHHHHhccccCCcEEec
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCL----------------LYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l----------------~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+++.++||+|++++..+.. .....+..++..+.++|||||.+++
T Consensus 118 ---~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 118 ---GVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp ---TTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ---hcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence 3556899999988532211 1112247899999999999999984
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-14 Score=139.09 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=89.3
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCC--------CCCCCCCCC-------C
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD--------RPQSEGNIN-------N 358 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~--------~~~~~~~~~-------~ 358 (497)
...++.+|||||||+|.++..+++.|..+|+|+|+|+.+++.|++++..++.... ....+.... .
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4567899999999999999999988777899999999999999988754421000 000000000 0
Q ss_pred CCce-EEEecchhhcccccCCCC---CceeEEEeccccccc-cChhhHHHHHHHHhccccCCcEEeccC
Q 010913 359 AGKM-EVVQGMVEELGESMQIQP---HSVDVLVSEWMGYCL-LYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 359 ~~~i-~~i~gd~~~l~~~l~~~~---~~fDvIvs~~~~~~l-~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
..++ .++.+|+.+.. ++++ ++||+|++....+.+ .+..++..++.++.++|||||.+++..
T Consensus 133 ~~~v~~~~~~d~~~~~---~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQ---PLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHEEEEEECCTTSSS---TTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhheeEEEeeeccCC---CCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 0127 89999998764 2344 899999976522211 156688999999999999999998543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-14 Score=135.74 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++ .++.++.+|+.++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------------------~~~~~~~~d~~~~~-- 106 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN-------------------PDAVLHHGDMRDFS-- 106 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHC-------------------TTSEEEECCTTTCC--
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC-------------------CCCEEEECChHHCC--
Confidence 4678999999999999999999987 8999999999999998873 36899999998863
Q ss_pred cCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ +++||+|++.. ....+....++..+|..+.++|||||.++++
T Consensus 107 --~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 107 --L-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp --C-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred --c-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4 78999999864 4333444467889999999999999999976
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=130.51 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+.+|.+|||+|||+|.++..+++. |..+|+|+|+|+.|++.+.+.++.. .++.++.+|+..
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~----------------~~v~~~~~d~~~ 116 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----------------NNIIPLLFDASK 116 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC----------------SSEEEECSCTTC
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC----------------CCeEEEEcCCCC
Confidence 34568899999999999999999987 4459999999999887776665543 368888998876
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.....+++ ++||+|++.. ........++.++.++|||||.+++.
T Consensus 117 ~~~~~~~~-~~fD~V~~~~-----~~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 117 PWKYSGIV-EKVDLIYQDI-----AQKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp GGGTTTTC-CCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcccc-cceeEEEEec-----cChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 42111333 7899999862 22334556689999999999999854
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-14 Score=134.62 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=90.6
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.++......++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++. .++.++.
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------------------~~~~~~~ 84 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------------------PNTNFGK 84 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------------------TTSEEEE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------------------CCcEEEE
Confidence 4566666778899999999999999999988 2348999999999999998771 4789999
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+|+.++ + +.++||+|++.. ++.+..++..+|.++.++|||||.+++..
T Consensus 85 ~d~~~~----~-~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 85 ADLATW----K-PAQKADLLYANA---VFQWVPDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp CCTTTC----C-CSSCEEEEEEES---CGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CChhhc----C-ccCCcCEEEEeC---chhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 999886 3 577899999765 55555788999999999999999998654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=134.34 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++. .++.++.+|+.++.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------------------~~~~~~~~d~~~~~-- 102 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP------------------KEFSITEGDFLSFE-- 102 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC------------------TTCCEESCCSSSCC--
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC------------------CceEEEeCChhhcC--
Confidence 4788999999999999999999977 99999999999999988752 26899999998873
Q ss_pred cCCCCCceeEEEeccccccccChhhHHH--HHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSS--VLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~--vL~~~~r~LkpgG~li~~~ 422 (497)
++ ++||+|++.. ++.+..+... +|.++.++|||||.+++..
T Consensus 103 --~~-~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 103 --VP-TSIDTIVSTY---AFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp --CC-SCCSEEEEES---CGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred --CC-CCeEEEEECc---chhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 55 8999999765 4555555555 9999999999999999653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=140.83 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC------------------------
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRP------------------------ 350 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~------------------------ 350 (497)
.++++|||||||+|.++..+++. +..+|+|||+|+.+++.|++++...+......
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 57899999999999999999998 55699999999999999998876544210000
Q ss_pred --------------------CCCCCCCCCCceEEEecchhhccc-ccCCCCCceeEEEecccccccc---ChhhHHHHHH
Q 010913 351 --------------------QSEGNINNAGKMEVVQGMVEELGE-SMQIQPHSVDVLVSEWMGYCLL---YESMLSSVLF 406 (497)
Q Consensus 351 --------------------~~~~~~~~~~~i~~i~gd~~~l~~-~l~~~~~~fDvIvs~~~~~~l~---~~~~l~~vL~ 406 (497)
........+.+|+++++|+..... .+++..++||+|+|..+...++ ....+..++.
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 000011123589999999875321 1134678999999865432222 3447889999
Q ss_pred HHhccccCCcEEeccC
Q 010913 407 ARDQWLKPGGAILPDT 422 (497)
Q Consensus 407 ~~~r~LkpgG~li~~~ 422 (497)
.+.++|||||+|++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999999643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-14 Score=133.05 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||||||+|.++..+|+.+ ...|+|||+|+.+++.|++++..+++ .++.++++|+.++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l--------------~nv~~~~~Da~~~l~- 98 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL--------------SNLRVMCHDAVEVLH- 98 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC--------------SSEEEECSCHHHHHH-
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC--------------CcEEEEECCHHHHHH-
Confidence 56799999999999999999873 45899999999999999999998887 579999999988520
Q ss_pred cCCCCCceeEEEeccccccccChhh------HHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM------LSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~------l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..+++++||.|++..... ...... ...++..+.++|||||.+++.+.
T Consensus 99 ~~~~~~~~d~v~~~~~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 99 KMIPDNSLRMVQLFFPDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp HHSCTTCEEEEEEESCCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHcCCCChheEEEeCCCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 015788999999652111 111111 13589999999999999986543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.3e-14 Score=133.84 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||||||+|.+++.+++. +..+|+|||+|+.+++.|+++++.+++ .+++++++++.++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~v~~~~~d~~~~~- 133 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL--------------ENTTFCHDRAETFG- 133 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC--------------SSEEEEESCHHHHT-
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCEEEEeccHHHhc-
Confidence 47889999999999999999965 345999999999999999999988887 46999999998873
Q ss_pred ccCCC---CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 375 SMQIQ---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~~~---~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++ .++||+|++..+ ..+..++..+.++|||||.+++
T Consensus 134 ---~~~~~~~~fD~V~~~~~-------~~~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 134 ---QRKDVRESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp ---TCTTTTTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEE
T ss_pred ---ccccccCCccEEEEecc-------CCHHHHHHHHHHhcCCCCEEEE
Confidence 32 578999997541 4578899999999999999984
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-14 Score=137.17 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=87.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+|||+|.+++.+++.|+.+|+|+|+|+.+++.|+++++.+++. ++++++++|+.++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~-------------~~v~~~~~D~~~~~-- 188 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-------------DRMSAYNMDNRDFP-- 188 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-------------TTEEEECSCTTTCC--
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEEECCHHHhc--
Confidence 568999999999999999999998768999999999999999999999982 46999999999873
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..++||+|+++++. ....++..+.++|||||.+++.++
T Consensus 189 ---~~~~fD~Vi~~~p~-------~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 189 ---GENIADRILMGYVV-------RTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp ---CCSCEEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ---ccCCccEEEECCch-------hHHHHHHHHHHHCCCCeEEEEEEe
Confidence 37789999976531 224577888999999999985444
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=134.01 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=83.7
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.+.++....+.++.+|||||||+|.++..+++.|+ +|+|||+|+.|++.|++++..+ ++
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~--------------------~v 92 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR--------------------CV 92 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS--------------------CC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc--------------------cc
Confidence 34566677788899999999999999999999987 9999999999999999886432 12
Q ss_pred ecchhhccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 366 QGMVEELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 366 ~gd~~~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+++.++.... ....++||+|++..+.+.+ ....+..++..+.++| |||+++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~-~~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 93 TIDLLDITAEIPKELAGHFDFVLNDRLINRF-TTEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp EEEECCTTSCCCGGGTTCCSEEEEESCGGGS-CHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred eeeeeecccccccccCCCccEEEEhhhhHhC-CHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 23333332000 0125689999987533222 3456788999999999 99999854
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=127.87 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=89.1
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....++......++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++ .++++
T Consensus 65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--------------~~v~~ 129 (210)
T 3lbf_A 65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDL--------------HNVST 129 (210)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTC--------------CSEEE
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCC--------------CceEE
Confidence 344455556678899999999999999999999965 999999999999999999998886 47999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+|+.+.. .+.++||+|++... +.+.. ..+.++|||||++++...
T Consensus 130 ~~~d~~~~~----~~~~~~D~i~~~~~---~~~~~------~~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 130 RHGDGWQGW----QARAPFDAIIVTAA---PPEIP------TALMTQLDEGGILVLPVG 175 (210)
T ss_dssp EESCGGGCC----GGGCCEEEEEESSB---CSSCC------THHHHTEEEEEEEEEEEC
T ss_pred EECCcccCC----ccCCCccEEEEccc---hhhhh------HHHHHhcccCcEEEEEEc
Confidence 999998753 34678999998652 22222 246789999999996544
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-14 Score=138.28 Aligned_cols=108 Identities=31% Similarity=0.341 Sum_probs=89.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++ .++.
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------------------~~~~ 79 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVH--------------------PQVE 79 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCC--------------------TTEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhc--------------------cCCE
Confidence 3455566655667889999999999999999999776 999999999998766543 2789
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+|++++ +++.++||+|++.. ++.+..++..++.++.++|| ||.+++
T Consensus 80 ~~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~Lk-gG~~~~ 128 (261)
T 3ege_A 80 WFTGYAENL----ALPDKSVDGVISIL---AIHHFSHLEKSFQEMQRIIR-DGTIVL 128 (261)
T ss_dssp EECCCTTSC----CSCTTCBSEEEEES---CGGGCSSHHHHHHHHHHHBC-SSCEEE
T ss_pred EEECchhhC----CCCCCCEeEEEEcc---hHhhccCHHHHHHHHHHHhC-CcEEEE
Confidence 999999886 47789999999765 45555788999999999999 997663
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=128.89 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=91.1
Q ss_pred HHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 285 YRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 285 y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
...+|+. .+.+.||.+|||+|||+|.++..+|+. |. ++|+|+|+|+.|++.|++++...
T Consensus 62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---------------- 125 (233)
T 4df3_A 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---------------- 125 (233)
T ss_dssp HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC----------------
T ss_pred HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh----------------
Confidence 3444543 456889999999999999999999998 54 69999999999999998876543
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++..+.++...... .+....++|+|++.. .+..+...++.++.++|||||.+++
T Consensus 126 ~ni~~V~~d~~~p~~-~~~~~~~vDvVf~d~-----~~~~~~~~~l~~~~r~LKpGG~lvI 180 (233)
T 4df3_A 126 RNIFPILGDARFPEK-YRHLVEGVDGLYADV-----AQPEQAAIVVRNARFFLRDGGYMLM 180 (233)
T ss_dssp TTEEEEESCTTCGGG-GTTTCCCEEEEEECC-----CCTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCeeEEEEeccCccc-cccccceEEEEEEec-----cCChhHHHHHHHHHHhccCCCEEEE
Confidence 478889888876542 245678999999643 3445677899999999999999884
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=142.03 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=91.4
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHH-------HhCCCCCCCCCCCCCCC
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIA-------KDNDFWWDRPQSEGNIN 357 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~-------~~~gl~~~~~~~~~~~~ 357 (497)
...++..+.+.++.+|||||||+|.+++.+|+. |+.+|+|||+|+.+++.|++++ +.+|+.
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~----------- 230 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK----------- 230 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-----------
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-----------
Confidence 344555567789999999999999999999865 7777999999999999998754 334441
Q ss_pred CCCceEEEecchhhcccccCCCC--CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 358 NAGKMEVVQGMVEELGESMQIQP--HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 358 ~~~~i~~i~gd~~~l~~~l~~~~--~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
..+|++++||+.++. +.. ..||+|+++.+ + +.+++...|.++.+.|||||+|+..
T Consensus 231 -~~rVefi~GD~~~lp----~~d~~~~aDVVf~Nn~---~-F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 231 -HAEYTLERGDFLSEE----WRERIANTSVIFVNNF---A-FGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp -CCEEEEEECCTTSHH----HHHHHHTCSEEEECCT---T-CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred -CCCeEEEECcccCCc----cccccCCccEEEEccc---c-cCchHHHHHHHHHHcCCCCcEEEEe
Confidence 158999999998864 322 47999998652 2 3467888899999999999999943
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-14 Score=146.76 Aligned_cols=113 Identities=22% Similarity=0.369 Sum_probs=91.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhC-----C-CCCCCCCCCCCCCCCCceEEEe
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDN-----D-FWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~-----g-l~~~~~~~~~~~~~~~~i~~i~ 366 (497)
+.++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++..+ | +. ..++.+++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~------------~~~v~~~~ 148 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS------------RSNVRFLK 148 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTT------------CCCEEEEE
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccC------------CCceEEEE
Confidence 457899999999999999999986 2349999999999999999987654 3 21 25899999
Q ss_pred cchhhcccc--cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 367 GMVEELGES--MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 367 gd~~~l~~~--l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+|+.++... .+++.++||+|++.. ++.+..++..+|.++.++|||||.|++..
T Consensus 149 ~d~~~l~~~~~~~~~~~~fD~V~~~~---~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 149 GFIENLATAEPEGVPDSSVDIVISNC---VCNLSTNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp SCTTCGGGCBSCCCCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccHHHhhhcccCCCCCCCEEEEEEcc---chhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 999886210 146788999999876 44555678999999999999999998543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-14 Score=133.37 Aligned_cols=110 Identities=26% Similarity=0.354 Sum_probs=85.5
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++......++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++ .++.++.++
T Consensus 44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------------------~~~~~~~~~ 102 (227)
T 3e8s_A 44 ILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA--------------------GAGEVHLAS 102 (227)
T ss_dssp HHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT--------------------CSSCEEECC
T ss_pred HHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh--------------------cccccchhh
Confidence 33333335679999999999999999999987 999999999999988876 256788888
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.++......+..+||+|++.. ++. ..++..++..+.++|||||.+++...
T Consensus 103 ~~~~~~~~~~~~~~fD~v~~~~---~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 103 YAQLAEAKVPVGKDYDLICANF---ALL-HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp HHHHHTTCSCCCCCEEEEEEES---CCC-SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHhhcccccccCCCccEEEECc---hhh-hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 8877321122345699999765 444 56778999999999999999996544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-14 Score=137.39 Aligned_cols=100 Identities=24% Similarity=0.367 Sum_probs=85.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
...++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++. .++.++.+|+..+.
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------------------~~~~~~~~d~~~~~ 113 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-------------------PHLHFDVADARNFR 113 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-------------------TTSCEEECCTTTCC
T ss_pred CCCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-------------------CCCEEEECChhhCC
Confidence 456789999999999999999999765 9999999999999998763 36789999998863
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ +++||+|++.. ++.+..++..+|.++.++|||||.+++.
T Consensus 114 ----~-~~~fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 114 ----V-DKPLDAVFSNA---MLHWVKEPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp ----C-SSCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----c-CCCcCEEEEcc---hhhhCcCHHHHHHHHHHhcCCCcEEEEE
Confidence 4 57999999765 5555567889999999999999999854
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=129.48 Aligned_cols=112 Identities=18% Similarity=0.255 Sum_probs=89.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.+.... .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++. .++.
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-------------------~~~~ 86 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-------------------PDAT 86 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC-------------------TTCE
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC-------------------CCCE
Confidence 3444444433 5778999999999999999999876 9999999999999998763 3689
Q ss_pred EEecchhhcccccCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+|+.++. + .++||+|+|.. ....+....++..+|..+.++|||||.+++..
T Consensus 87 ~~~~d~~~~~----~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 87 LHQGDMRDFR----L-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp EEECCTTTCC----C-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred EEECCHHHcc----c-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999998863 4 67899999632 33333344678899999999999999999764
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-14 Score=126.48 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||+|||+|.++..+++.|. .|+|+|+|+.+++.|++++..+++ +++++++|+.+.....
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~~~~~d~~~~~~~~ 104 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL---------------GARVVALPVEVFLPEA 104 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC---------------CCEEECSCHHHHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC---------------ceEEEeccHHHHHHhh
Confidence 678999999999999999999987 599999999999999999987764 6899999998742111
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHh--ccccCCcEEeccCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD--QWLKPGGAILPDTA 423 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~--r~LkpgG~li~~~~ 423 (497)
+...++||+|++.+... .....++..+. ++|||||.+++...
T Consensus 105 ~~~~~~~D~i~~~~~~~-----~~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 105 KAQGERFTVAFMAPPYA-----MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHTTCCEEEEEECCCTT-----SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred hccCCceEEEEECCCCc-----hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 11234899999875322 23344555555 99999999985433
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=130.24 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..++.++++ + ..+|+|||+++.+++.|+++++.+++. ++|+++.+|+.+..
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------------~~v~~~~~d~~~~l 123 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-------------DKVTILNGASQDLI 123 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-------------GGEEEEESCHHHHG
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-------------CceEEEECCHHHHH
Confidence 46789999999999999999985 2 459999999999999999999988872 47999999987742
Q ss_pred cccC--CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 374 ESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 374 ~~l~--~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
..++ +..++||+|++.. ...+......++..+ ++|||||+|+++...
T Consensus 124 ~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 124 PQLKKKYDVDTLDMVFLDH---WKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp GGTTTTSCCCCCSEEEECS---CGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred HHHHHhcCCCceEEEEEcC---CcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 1111 1126899999754 222233344567777 999999999976554
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=128.57 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||||||+|.++..+++. +..+|+|||+|+.+++.|++++..+++ .++.++++|+.++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~--------------~~v~~~~~d~~~~~~ 105 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV--------------PNIKLLWVDGSDLTD 105 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--------------SSEEEEECCSSCGGG
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC--------------CCEEEEeCCHHHHHh
Confidence 35789999999999999999988 345999999999999999999988876 589999999987631
Q ss_pred ccCCCCCceeEEEecccccccc--Chh---hHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLL--YES---MLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~--~~~---~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++.++||+|++........ +.. ....++..+.++|+|||.+++.
T Consensus 106 --~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 106 --YFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp --TSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred --hcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 15678899999764211000 000 2357899999999999999854
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=122.64 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=89.8
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....++......++.+|||+|||+|.++..+++ +..+|+|+|+|+.+++.|++++..+++ .++++
T Consensus 23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~~~ 87 (183)
T 2yxd_A 23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI--------------KNCQI 87 (183)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC--------------CSEEE
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC--------------CcEEE
Confidence 444455555667889999999999999999998 455999999999999999999998886 57999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+|+.+. ++.++||+|++... ..+..++..+.++ |||.+++..
T Consensus 88 ~~~d~~~~-----~~~~~~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 88 IKGRAEDV-----LDKLEFNKAFIGGT-------KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp EESCHHHH-----GGGCCCSEEEECSC-------SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred EECCcccc-----ccCCCCcEEEECCc-------ccHHHHHHHHhhC--CCCEEEEEe
Confidence 99999873 44578999997653 4567888888888 999998544
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=132.02 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..++.+|||||||+|..++.+|.. +..+|+|||+|+.+++.|+++++.+++ .+|++++++++++.
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l--------------~~v~~~~~d~~~~~ 143 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL--------------KGARALWGRAEVLA 143 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC--------------SSEEEEECCHHHHT
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--------------CceEEEECcHHHhh
Confidence 357889999999999999999987 556999999999999999999999887 46999999999874
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.. +...++||+|+|..+ ..+..++..+.++|||||.++.
T Consensus 144 ~~-~~~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 144 RE-AGHREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp TS-TTTTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEE
T ss_pred cc-cccCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEE
Confidence 10 012478999998642 3457889999999999999873
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=128.95 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||||||+|.++..+|+. +..+|+|||+|+.+++.|++++..+++ .++.++++|+.++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~--------------~nv~~~~~d~~~l~~- 102 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA--------------QNVKLLNIDADTLTD- 102 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC--------------SSEEEECCCGGGHHH-
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC--------------CCEEEEeCCHHHHHh-
Confidence 5679999999999999999987 345999999999999999999998887 579999999988631
Q ss_pred cCCCCCceeEEEeccccccc--cCh-h--hHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCL--LYE-S--MLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l--~~~-~--~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++.++||.|++....... .+. . ....++..+.++|||||.|++.+
T Consensus 103 -~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 103 -VFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp -HCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -hcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 1567889999864211000 000 0 13678999999999999998544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=123.47 Aligned_cols=114 Identities=24% Similarity=0.315 Sum_probs=92.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
..+..++......++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..+++ ..++.
T Consensus 20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-------------~~~~~ 85 (192)
T 1l3i_A 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-------------GDNVT 85 (192)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-------------CTTEE
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCC-------------CcceE
Confidence 344455555566788999999999999999999988 5999999999999999999988876 25899
Q ss_pred EEecchhhcccccCCCC-CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQP-HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~-~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+++.+. ++. ++||+|++.. .+ ..+..++..+.++|+|||.+++..
T Consensus 86 ~~~~d~~~~-----~~~~~~~D~v~~~~---~~---~~~~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 86 LMEGDAPEA-----LCKIPDIDIAVVGG---SG---GELQEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp EEESCHHHH-----HTTSCCEEEEEESC---CT---TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEecCHHHh-----cccCCCCCEEEECC---ch---HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999998873 222 5899999764 22 245789999999999999998543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=127.23 Aligned_cols=99 Identities=23% Similarity=0.337 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|++++..+++ .+++++.+|+.+.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~v~~~~~d~~~~--- 121 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI--------------YDIALQKTSLLAD--- 121 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC--------------CCCEEEESSTTTT---
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CceEEEecccccc---
Confidence 57889999999999999999998888999999999999999999998887 3499999998764
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++||+|++.... ..+..++..+.++|+|||.+++
T Consensus 122 ---~~~~fD~i~~~~~~------~~~~~~l~~~~~~L~~gG~l~~ 157 (205)
T 3grz_A 122 ---VDGKFDLIVANILA------EILLDLIPQLDSHLNEDGQVIF 157 (205)
T ss_dssp ---CCSCEEEEEEESCH------HHHHHHGGGSGGGEEEEEEEEE
T ss_pred ---CCCCceEEEECCcH------HHHHHHHHHHHHhcCCCCEEEE
Confidence 35899999976422 3357889999999999999985
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-14 Score=137.25 Aligned_cols=105 Identities=25% Similarity=0.211 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++..+++ .+++.++++|+.++.
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~d~~~~~-- 140 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGI-------------ADKIEFICGDFLLLA-- 140 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-------------GGGEEEEESCHHHHG--
T ss_pred cCCCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-------------CcCeEEEECChHHhc--
Confidence 3789999999999999999999985 999999999999999999999887 248999999999873
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.++||+|+++.+ +.+.......+..+.++|+|||.+++..
T Consensus 141 ---~~~~~D~v~~~~~---~~~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 141 ---SFLKADVVFLSPP---WGGPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp ---GGCCCSEEEECCC---CSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred ---ccCCCCEEEECCC---cCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence 4679999998763 3333444446677899999999988654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=128.07 Aligned_cols=121 Identities=10% Similarity=0.151 Sum_probs=93.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.+...+.......++.+|||||||+|..++.++++ + ..+|++||+|+.+++.|+++++..|+.. ++
T Consensus 43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~------------~~ 110 (221)
T 3dr5_A 43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSP------------SR 110 (221)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCG------------GG
T ss_pred HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc------------Cc
Confidence 34444444444344569999999999999999986 2 4599999999999999999999988720 48
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
|+++.+|+.++.. .++.++||+|++.. .......++..+.++|||||+|+++...
T Consensus 111 i~~~~gda~~~l~--~~~~~~fD~V~~d~------~~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 111 VRFLLSRPLDVMS--RLANDSYQLVFGQV------SPMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp EEEECSCHHHHGG--GSCTTCEEEEEECC------CTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred EEEEEcCHHHHHH--HhcCCCcCeEEEcC------cHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 9999999987631 13368999999753 1234567899999999999999976553
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=131.62 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=101.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||||||+|.++..+++.|+ +|+|+|+|+.+++.|+++ +.++.+++.++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~----------------------~~~~~~d~~~~~- 94 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK----------------------FNVVKSDAIEYL- 94 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT----------------------SEEECSCHHHHH-
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh----------------------cceeeccHHHHh-
Confidence 45779999999999999999999987 799999999999887743 578899988752
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCcc---ccccCcccccc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFW---ENVYGFTMSCV 451 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw---~~v~g~~~~~~ 451 (497)
.+++.++||+|++..+...+ ...++..++.++.++|||||.+++.+.+..... ....+| .....+....+
T Consensus 95 -~~~~~~~fD~i~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l 167 (240)
T 3dli_A 95 -KSLPDKYLDGVMISHFVEHL-DPERLFELLSLCYSKMKYSSYIVIESPNPTSLY-----SLINFYIDPTHKKPVHPETL 167 (240)
T ss_dssp -HTSCTTCBSEEEEESCGGGS-CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHH-----HHHHHTTSTTCCSCCCHHHH
T ss_pred -hhcCCCCeeEEEECCchhhC-CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhH-----HHHHHhcCccccccCCHHHH
Confidence 14678999999986533332 233678999999999999999986543211000 000011 22233455667
Q ss_pred chHHHhhhcCCCeEeeeC
Q 010913 452 GREVVQDAAGIPIVDVVD 469 (497)
Q Consensus 452 ~~~~~~~~~~~p~v~~v~ 469 (497)
...+...+|....+....
T Consensus 168 ~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 168 KFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp HHHHHHHTCEEEEEEEEC
T ss_pred HHHHHHCCCeEEEEEEec
Confidence 777777777644444444
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=131.85 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=86.1
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.+..... ++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++.. .+ +
T Consensus 44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~------------------~~--~ 100 (260)
T 2avn_A 44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV------------------KN--V 100 (260)
T ss_dssp HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC------------------SC--E
T ss_pred HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC------------------CC--E
Confidence 3444444332 788999999999999999999877 89999999999999987731 12 7
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+.+++.++ +++.++||+|++..... ....++..+|.++.++|||||.+++...+
T Consensus 101 ~~~d~~~~----~~~~~~fD~v~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 101 VEAKAEDL----PFPSGAFEAVLALGDVL--SYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp EECCTTSC----CSCTTCEEEEEECSSHH--HHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred EECcHHHC----CCCCCCEEEEEEcchhh--hccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 88888876 46788999999753211 11245889999999999999999965543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.2e-14 Score=125.98 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++ . ++++++.++ +
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~--------------~~v~~~~~d---~-- 69 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----F--------------DSVITLSDP---K-- 69 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----C--------------TTSEEESSG---G--
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----C--------------CCcEEEeCC---C--
Confidence 46788999999999999999999976 999999999999999887 1 478999998 3
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.++||+|++.. ++.+..++..++.++.++|||||.+++.
T Consensus 70 --~~~~~~~D~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 70 --EIPDNSVDFILFAN---SFHDMDDKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp --GSCTTCEEEEEEES---CSTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCCCCceEEEEEcc---chhcccCHHHHHHHHHHhcCCCCEEEEE
Confidence 36788999999765 5556678899999999999999999854
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-13 Score=127.33 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=86.1
Q ss_pred HhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 290 LENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 290 ~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
+....+.++.+|||+|||+|.++..+++. |..+|+|+|+|+.+++.|+++++.+ .++.++.+|
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------~~v~~~~~d 130 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----------------ENIIPILGD 130 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----------------TTEEEEECC
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----------------CCeEEEECC
Confidence 44455678899999999999999999988 6569999999999999999886443 479999999
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+......++++ .+||+|+... ........++..+.++|||||.+++.
T Consensus 131 ~~~~~~~~~~~-~~~D~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 131 ANKPQEYANIV-EKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp TTCGGGGTTTS-CCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccccccC-ccEEEEEEec-----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 98732112344 7899999432 23334477899999999999999853
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=130.39 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||||||+|..+..+++. +..+|+|+|+++.+++.|+++++..++ .++++++.+|+.+..
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~- 135 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-------------ENQVRIIEGNALEQF- 135 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-------------TTTEEEEESCGGGCH-
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEECCHHHHH-
Confidence 46789999999999999999985 245999999999999999999999887 358999999998752
Q ss_pred ccC-CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQ-IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~-~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+ ...++||+|++.. .......++..+.++|||||+|+++.
T Consensus 136 --~~~~~~~fD~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 136 --ENVNDKVYDMIFIDA------AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp --HHHTTSCEEEEEEET------TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred --HhhccCCccEEEEcC------cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2 2267899999643 23456779999999999999998643
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=132.18 Aligned_cols=108 Identities=24% Similarity=0.372 Sum_probs=89.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.+... +.++.+|||+|||+|.+++.+++.|+ +|+|+|+++.+++.|++++..+++ . ++
T Consensus 109 ~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~--------------~-v~ 170 (254)
T 2nxc_A 109 LALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV--------------R-PR 170 (254)
T ss_dssp HHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC--------------C-CE
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCC--------------c-EE
Confidence 344444433 36789999999999999999999998 999999999999999999998886 3 89
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+++.+. ++.++||+|+++.+. ..+..++..+.++|||||.+++
T Consensus 171 ~~~~d~~~~-----~~~~~fD~Vv~n~~~------~~~~~~l~~~~~~LkpgG~lil 216 (254)
T 2nxc_A 171 FLEGSLEAA-----LPFGPFDLLVANLYA------ELHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp EEESCHHHH-----GGGCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECChhhc-----CcCCCCCEEEECCcH------HHHHHHHHHHHHHcCCCCEEEE
Confidence 999998874 345789999976421 2457889999999999999985
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-13 Score=138.40 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=94.8
Q ss_pred HHHHHHHHhCC--CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 283 DSYRQAILENP--SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 283 ~~y~~~i~~~~--~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..+.+.+.... ...++.+|||+|||+|.++..+++.|+ +|+|||+|+.+++.|++++..+++
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~--------------- 280 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL--------------- 280 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC---------------
Confidence 34444444322 235788999999999999999999987 999999999999999999999886
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccc--cChhhHHHHHHHHhccccCCcEEecc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l--~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++++.+|+.+.. .+.++||+|++++..+.. ........++..+.++|||||.+++.
T Consensus 281 ~v~~~~~D~~~~~----~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 281 KAQALHSDVDEAL----TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp CCEEEECSTTTTS----CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEEEcchhhcc----ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 4899999998863 345899999998643221 11456788999999999999999843
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=127.27 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++..+++ .+++++.+++.++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~v~~~~~d~~~~~-- 128 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL--------------ENIEPVQSRVEEFP-- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--------------SSEEEEECCTTTSC--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCeEEEecchhhCC--
Confidence 5789999999999999999987 445999999999999999999998886 45999999998762
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.++||+|++..+ ..+..++..+.++|+|||.+++.
T Consensus 129 ---~~~~~D~i~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 129 ---SEPPFDGVISRAF-------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ---CCSCEEEEECSCS-------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ---ccCCcCEEEEecc-------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 4578999997531 34678999999999999999854
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-13 Score=134.02 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|+++....+... ......++.++++|+..+...
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~ 105 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRR-------DSEYIFSAEFITADSSKELLI 105 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSS-------CC-CCCEEEEEECCTTTSCST
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcc-------cccccceEEEEEecccccchh
Confidence 4678999999999999999998766699999999999999999876532000 000024799999999886311
Q ss_pred cCC--CCCceeEEEeccccccc-cChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQI--QPHSVDVLVSEWMGYCL-LYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~--~~~~fDvIvs~~~~~~l-~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.++ +.++||+|+|....+.+ .+...+..+|.++.++|||||.+++.+.
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 106 DKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 113 34589999986533222 4556778999999999999999996544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-14 Score=134.43 Aligned_cols=108 Identities=16% Similarity=0.053 Sum_probs=84.3
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++. ..+++++++|+.++.
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~-----------------~~~~~~~~~d~~~~~ 114 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT-----------------AANISYRLLDGLVPE 114 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC-----------------CTTEEEEECCTTCHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc-----------------ccCceEEECcccccc
Confidence 356789999999999999999999987 89999999999999998751 147999999998864
Q ss_pred cccCCC-CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 374 ESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 374 ~~l~~~-~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
...++. ...||+|++..+.+.+ ...++..++.++.++|||||.+++
T Consensus 115 ~~~~~~~~~~~d~v~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i 161 (245)
T 3ggd_A 115 QAAQIHSEIGDANIYMRTGFHHI-PVEKRELLGQSLRILLGKQGAMYL 161 (245)
T ss_dssp HHHHHHHHHCSCEEEEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred cccccccccCccEEEEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 111111 1248999987533322 333788999999999999998763
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=132.20 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=90.3
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHh---CCCCCCCCCCCCCCCCCCceEEEe
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKD---NDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~---~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
......++.+|||+|||+|.+++.+++.+ ..+|+|||+++.+++.|++++.. +++ .+++.+++
T Consensus 30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-------------~~~v~~~~ 96 (260)
T 2ozv_A 30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF-------------SARIEVLE 96 (260)
T ss_dssp HTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT-------------GGGEEEEE
T ss_pred HHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC-------------cceEEEEe
Confidence 34455678899999999999999999884 45999999999999999999887 776 24799999
Q ss_pred cchhhcccc---cCCCCCceeEEEeccccccc---------------cChhhHHHHHHHHhccccCCcEEec
Q 010913 367 GMVEELGES---MQIQPHSVDVLVSEWMGYCL---------------LYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 367 gd~~~l~~~---l~~~~~~fDvIvs~~~~~~l---------------~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+|+.++... .+++.++||+|++++..+.. .....+..++..+.++|||||.+++
T Consensus 97 ~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 97 ADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp CCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 999876210 02457899999998532211 0112367899999999999999984
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=127.52 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.+|.+|||||||+|.+++.+++.| +.+|+|+|+++.+++.|+++++.+|+. ++|+++.+|+.+.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-------------~~i~~~~~d~l~~-- 78 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK-------------EKIQVRLANGLAA-- 78 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-------------TTEEEEECSGGGG--
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEEECchhhh--
Confidence 578899999999999999999986 568999999999999999999999983 5899999998653
Q ss_pred ccCCCCC-ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPH-SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~-~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++ +||+|+...|+- ..+..+|......|+|+|.++.+
T Consensus 79 ---l~~~~~~D~IviaG~Gg-----~~i~~Il~~~~~~L~~~~~lVlq 118 (225)
T 3kr9_A 79 ---FEETDQVSVITIAGMGG-----RLIARILEEGLGKLANVERLILQ 118 (225)
T ss_dssp ---CCGGGCCCEEEEEEECH-----HHHHHHHHHTGGGCTTCCEEEEE
T ss_pred ---cccCcCCCEEEEcCCCh-----HHHHHHHHHHHHHhCCCCEEEEE
Confidence 3434 699998765543 23577899999999999999843
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=122.94 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|+++. .++.++.+|+.++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~-------------------~~~~~~~~d~~~~-- 101 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF-------------------PEARWVVGDLSVD-- 101 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-------------------TTSEEEECCTTTS--
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC-------------------CCCcEEEcccccC--
Confidence 35788999999999999999999976 9999999999999998774 3578999999886
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.++||+|++............+..++..+.++|+|||.+++.
T Consensus 102 --~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~ 146 (195)
T 3cgg_A 102 --QISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIG 146 (195)
T ss_dssp --CCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 366789999998621111223456788999999999999999853
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-13 Score=129.89 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=94.2
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
++.+...++.... .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++..+++ .
T Consensus 95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--------------~ 159 (276)
T 2b3t_A 95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI--------------K 159 (276)
T ss_dssp HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC--------------C
T ss_pred HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------C
Confidence 4555566665544 56789999999999999999976 455999999999999999999988876 4
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccc----------cccCh------------hhHHHHHHHHhccccCCcEE
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGY----------CLLYE------------SMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~----------~l~~~------------~~l~~vL~~~~r~LkpgG~l 418 (497)
+++++++|+.+. ++.++||+|++++... .+.++ .....++..+.++|||||.+
T Consensus 160 ~v~~~~~d~~~~-----~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l 234 (276)
T 2b3t_A 160 NIHILQSDWFSA-----LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFL 234 (276)
T ss_dssp SEEEECCSTTGG-----GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEE
T ss_pred ceEEEEcchhhh-----cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 799999999774 3467899999975311 11111 34578899999999999999
Q ss_pred ecc
Q 010913 419 LPD 421 (497)
Q Consensus 419 i~~ 421 (497)
++.
T Consensus 235 ~~~ 237 (276)
T 2b3t_A 235 LLE 237 (276)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=138.56 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-ceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG-KMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~-~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||+|.+++.+|+.|+.+|+|||+|+.+++.|+++++.|++. + +++++++|+.++..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~-------------~~~v~~~~~D~~~~l~ 277 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD-------------MANHQLVVMDVFDYFK 277 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC-------------CTTEEEEESCHHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------ccceEEEECCHHHHHH
Confidence 578899999999999999999988889999999999999999999999872 3 79999999987521
Q ss_pred ccCCCCCceeEEEecccccc-----cc-ChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYC-----LL-YESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~-----l~-~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.+.....+||+|++.+..+. .. .......++..+.++|+|||+|+++.+
T Consensus 278 ~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 278 YARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp HHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 11112458999998764321 11 123456678888999999999986544
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=130.09 Aligned_cols=109 Identities=26% Similarity=0.384 Sum_probs=91.8
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..++....+.++.+|||+|||+|.++..+++. | ..+|+|+|+|+.+++.|+++++.+++ .+++++
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------------~~~v~~ 149 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-------------DDRVTI 149 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-------------TTTEEE
T ss_pred HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-------------CCceEE
Confidence 45666667788999999999999999999998 4 46999999999999999999998887 246999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.+. ++.++||+|++.+ ..+..++..+.++|+|||.+++.
T Consensus 150 ~~~d~~~~-----~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~ 193 (255)
T 3mb5_A 150 KLKDIYEG-----IEEENVDHVILDL--------PQPERVVEHAAKALKPGGFFVAY 193 (255)
T ss_dssp ECSCGGGC-----CCCCSEEEEEECS--------SCGGGGHHHHHHHEEEEEEEEEE
T ss_pred EECchhhc-----cCCCCcCEEEECC--------CCHHHHHHHHHHHcCCCCEEEEE
Confidence 99999864 5678899999753 23456888999999999999843
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=132.06 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=92.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHH------HHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEK------MAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~------~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
....++....+.++.+|||||||+|.++..+++. |. .+|+|+|+|+. +++.|++++..+++
T Consensus 31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~----------- 99 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL----------- 99 (275)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----------
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----------
Confidence 3344555556678999999999999999999988 53 59999999997 89999999988776
Q ss_pred CCCCceEEEecc-hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 357 NNAGKMEVVQGM-VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 357 ~~~~~i~~i~gd-~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++++++.+| ..... ++++.++||+|++.. ++.+..++..++..+.++++|||.+++.
T Consensus 100 --~~~v~~~~~d~~~~~~--~~~~~~~fD~v~~~~---~l~~~~~~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 100 --GDRLTVHFNTNLSDDL--GPIADQHFDRVVLAH---SLWYFASANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp --GGGEEEECSCCTTTCC--GGGTTCCCSEEEEES---CGGGSSCHHHHHHHHHHHTTTCSEEEEE
T ss_pred --CCceEEEECChhhhcc--CCCCCCCEEEEEEcc---chhhCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 2589999998 32221 346778999999765 4444455566777778888889999854
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-13 Score=136.95 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.-.+.++......++.+|||+|||+|.+++.+++.+ ..+|+|||+|+.+++.|++++..+++.. ..++
T Consensus 209 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~-----------~~~v 277 (375)
T 4dcm_A 209 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA-----------LDRC 277 (375)
T ss_dssp HHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGG-----------GGGE
T ss_pred HHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCc-----------CceE
Confidence 344566777777778999999999999999999984 4599999999999999999999888621 1258
Q ss_pred EEEecchhhcccccCCCCCceeEEEecccccccc--ChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL--YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~--~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++.+|+.+. ++.++||+|++++..+... .......++..+.++|||||.+++
T Consensus 278 ~~~~~D~~~~-----~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 278 EFMINNALSG-----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp EEEECSTTTT-----CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEechhhcc-----CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 8999999873 5678999999986433211 122345789999999999999984
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-13 Score=127.57 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.+|.+|||||||+|.+++.+++.| +.+|+|+|+++.+++.|+++++.+|+. ++|+++.+|+.+..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~-------------~~I~~~~gD~l~~~- 85 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT-------------SKIDVRLANGLSAF- 85 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT-------------TTEEEEECSGGGGC-
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CcEEEEECchhhcc-
Confidence 578999999999999999999986 568999999999999999999999983 58999999998752
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+..+||+|+...|+- ..+..+|....+.|+++|.++.+
T Consensus 86 ---~~~~~~D~IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlq 124 (230)
T 3lec_A 86 ---EEADNIDTITICGMGG-----RLIADILNNDIDKLQHVKTLVLQ 124 (230)
T ss_dssp ---CGGGCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEE
T ss_pred ---ccccccCEEEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEE
Confidence 2223799988766543 34567888889999999998843
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-13 Score=129.14 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..+..+++. + ..+|+|+|+|+.+++.|++++...|+ .++|+++.+|+.+..
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-------------~~~v~~~~~d~~~~l 128 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-------------DQRVTLREGPALQSL 128 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-------------TTTEEEEESCHHHHH
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEEcCHHHHH
Confidence 46789999999999999999987 3 46999999999999999999999887 358999999998742
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..+ ...++||+|++.. .......++..+.++|||||+|+++..
T Consensus 129 ~~~-~~~~~fD~V~~d~------~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 129 ESL-GECPAFDLIFIDA------DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp HTC-CSCCCCSEEEECS------CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred Hhc-CCCCCeEEEEECC------chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 111 1234899999643 234567789999999999999986544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=131.88 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=91.2
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeC-CHHHHHHHHHHHHhC-----CCCCCCCCCCCCC
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEA-SEKMAAVATQIAKDN-----DFWWDRPQSEGNI 356 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~-S~~~i~~A~~~~~~~-----gl~~~~~~~~~~~ 356 (497)
....+.+.......++.+|||||||+|.+++.+++.|+.+|+|+|+ |+.+++.|++++..| ++. .
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~---------~ 135 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSE---------T 135 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------------
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccc---------c
Confidence 3455666666656788999999999999999999998779999999 899999999999443 330 0
Q ss_pred CCCCceEEEecchhhcccccC--CCCCceeEEEeccccccccChhhHHHHHHHHhcccc---C--CcEEec
Q 010913 357 NNAGKMEVVQGMVEELGESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLK---P--GGAILP 420 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~--~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lk---p--gG~li~ 420 (497)
...+++.++..+..+....+. ++.++||+|++. .++.+......++..+.++|+ | ||.+++
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~---dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 136 VKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLA---DLLSFHQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp ---CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEE---SCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred CCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEe---CcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 001367887655433110010 135789999963 356667788999999999999 9 998663
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=137.73 Aligned_cols=111 Identities=20% Similarity=0.115 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.+++.+++.|+ +|+|||+|+.+++.|++++..+++.+ .++.++++|+.++...
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~------------~~v~~i~~D~~~~l~~ 218 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQ------------APIRWICEDAMKFIQR 218 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTT------------SCEEEECSCHHHHHHH
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCc------------cceEEEECcHHHHHHH
Confidence 4678999999999999999999998 99999999999999999999988721 2599999999886311
Q ss_pred cCCCCCceeEEEeccccccc-------cChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCL-------LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l-------~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.....+||+|++++..+.. ........++..+.++|+|||+++
T Consensus 219 ~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~ll 269 (332)
T 2igt_A 219 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 269 (332)
T ss_dssp HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred HHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEE
Confidence 00014689999997653332 123457789999999999999976
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=134.80 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCCHhHHHH----HHc-CCCEE--EEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCc--eEEE
Q 010913 296 MKGAVVMDIGCGTGILSLFA----AQA-GASRV--IAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGK--MEVV 365 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~l----a~~-G~~~V--~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~--i~~i 365 (497)
.++.+|||||||+|.++..+ +.. +...| +|+|+|+.|++.|++++... ++ .+ +.+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~--------------~~v~~~~~ 116 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL--------------ENVKFAWH 116 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC--------------TTEEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC--------------CcceEEEE
Confidence 56789999999999766432 222 22344 99999999999999988653 33 23 4556
Q ss_pred ecchhhcccc--cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 366 QGMVEELGES--MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 366 ~gd~~~l~~~--l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++++++... .++++++||+|++.. ++++..++..+|.++.++|||||.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~fD~V~~~~---~l~~~~d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 117 KETSSEYQSRMLEKKELQKWDFIHMIQ---MLYYVKDIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CSCHHHHHHHHHTTTCCCCEEEEEEES---CGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred ecchhhhhhhhccccCCCceeEEEEee---eeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence 7777664210 024578999999654 6677788999999999999999999854
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-14 Score=130.39 Aligned_cols=119 Identities=19% Similarity=0.097 Sum_probs=72.3
Q ss_pred hHHHHHHHHhCCCC-CCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSL-MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~~~-~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++.+.+.++..... .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+++
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------- 79 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------------- 79 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------------
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--------------
Confidence 34445555544433 678999999999999999999984 34999999999999999999877653
Q ss_pred CceEEEecchhhcccccCCCC-----CceeEEEeccccccccC-----------------------hhhHHHHHHHHhcc
Q 010913 360 GKMEVVQGMVEELGESMQIQP-----HSVDVLVSEWMGYCLLY-----------------------ESMLSSVLFARDQW 411 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~-----~~fDvIvs~~~~~~l~~-----------------------~~~l~~vL~~~~r~ 411 (497)
+++++++|+.+. ++. ++||+|++++..+.... ......++..+.++
T Consensus 80 -~~~~~~~d~~~~-----~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (215)
T 4dzr_A 80 -VVDWAAADGIEW-----LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYV 153 (215)
T ss_dssp ----CCHHHHHHH-----HHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGG
T ss_pred -ceEEEEcchHhh-----hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHH
Confidence 688999998874 333 89999999753211100 00116788889999
Q ss_pred ccCCcE-Eec
Q 010913 412 LKPGGA-ILP 420 (497)
Q Consensus 412 LkpgG~-li~ 420 (497)
|||||+ +++
T Consensus 154 LkpgG~l~~~ 163 (215)
T 4dzr_A 154 LARGRAGVFL 163 (215)
T ss_dssp BCSSSEEEEE
T ss_pred hcCCCeEEEE
Confidence 999999 553
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-13 Score=137.99 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=91.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHH-------HHHHHhCCCCCCCCCCCCCC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVA-------TQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A-------~~~~~~~gl~~~~~~~~~~~ 356 (497)
....++..+.+.++.+|||||||+|.++..+|+. |+.+|+|||+++.+++.| ++++...|+.
T Consensus 230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~---------- 299 (433)
T 1u2z_A 230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR---------- 299 (433)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----------
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----------
Confidence 3445556667788999999999999999999996 777899999999999998 8888888741
Q ss_pred CCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
..+++++.++.......++...++||+|+++. .+ +..++..+|.++.++|||||.|++.
T Consensus 300 --~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~---~l-~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 300 --LNNVEFSLKKSFVDNNRVAELIPQCDVILVNN---FL-FDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp --CCCEEEEESSCSTTCHHHHHHGGGCSEEEECC---TT-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred --CCceEEEEcCccccccccccccCCCCEEEEeC---cc-ccccHHHHHHHHHHhCCCCeEEEEe
Confidence 05899998754321000001236899999653 23 3357778899999999999999854
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-13 Score=126.34 Aligned_cols=109 Identities=19% Similarity=0.275 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..+..++++ + ..+|+|+|+++.+++.|++++...|+ .++++++.+|+.+..
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~ 123 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-------------NDRVEVRTGLALDSL 123 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-------------TTTEEEEESCHHHHH
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEEcCHHHHH
Confidence 46789999999999999999998 2 34999999999999999999998887 357999999997652
Q ss_pred cccCCC-CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~~-~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..++.. .++||+|++... ......++..+.++|+|||+++++..
T Consensus 124 ~~~~~~~~~~fD~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 124 QQIENEKYEPFDFIFIDAD------KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp HHHHHTTCCCCSEEEECSC------GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred HHHHhcCCCCcCEEEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 111111 267999996532 34567889999999999999986543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-13 Score=127.80 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.+|.+|||||||+|.+++.+++.| +.+|+|+|+++.+++.|+++++.+|+. ++|+++.+|+.+.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-------------~~I~v~~gD~l~~-- 84 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT-------------EQIDVRKGNGLAV-- 84 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-------------TTEEEEECSGGGG--
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEEecchhhc--
Confidence 578999999999999999999986 568999999999999999999999983 5799999999875
Q ss_pred ccCCCCC-ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPH-SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~-~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.++ +||+|++..|+- ..+..+|.+....|+++|.|+.+
T Consensus 85 ---~~~~~~~D~IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 85 ---IEKKDAIDTIVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp ---CCGGGCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEE
T ss_pred ---cCccccccEEEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEE
Confidence 3334 599998765543 34567889999999999999844
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-13 Score=133.04 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCC-----CCCCCCCC-----------CC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDR-----PQSEGNIN-----------NA 359 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~-----~~~~~~~~-----------~~ 359 (497)
.++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|++++....-.... +....... ..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 478899999999999766666543449999999999999999876432100000 00000000 00
Q ss_pred CceEEEecchhh-ccc-ccCCCCCceeEEEeccccccccC-hhhHHHHHHHHhccccCCcEEecc
Q 010913 360 GKMEVVQGMVEE-LGE-SMQIQPHSVDVLVSEWMGYCLLY-ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 360 ~~i~~i~gd~~~-l~~-~l~~~~~~fDvIvs~~~~~~l~~-~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
..+.++.+|+.+ +.. ...+++++||+|++....+.+.. ..++..+|.++.++|||||.|++.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 125677888877 310 00134567999998753222111 568899999999999999999964
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-13 Score=125.02 Aligned_cols=100 Identities=16% Similarity=0.076 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||+|||+|.+++.++.. ++ +|+|+|+|+.|++.|++++..+|+. .++.+ .+....
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~-------------~~v~~--~d~~~~- 110 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTT-------------IKYRF--LNKESD- 110 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCS-------------SEEEE--ECCHHH-
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCC-------------ccEEE--eccccc-
Confidence 55789999999999999999887 55 9999999999999999999999872 36666 444433
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++++||+|++..+.+++ .+....+..+.+.|+|||++|
T Consensus 111 ----~~~~~~DvVLa~k~LHlL---~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 111 ----VYKGTYDVVFLLKMLPVL---KQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp ----HTTSEEEEEEEETCHHHH---HHTTCCHHHHHHTCEEEEEEE
T ss_pred ----CCCCCcChhhHhhHHHhh---hhhHHHHHHHHHHhCCCCEEE
Confidence 367889999976544333 566677779999999999988
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=124.39 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=85.9
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
....+.++.+|||+|||+|.++..+++. | ..+|+|+|+|+.+++.+.++++.+ .++.++.+|
T Consensus 71 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----------------~~v~~~~~d 134 (233)
T 2ipx_A 71 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----------------TNIIPVIED 134 (233)
T ss_dssp SCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----------------TTEEEECSC
T ss_pred heecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----------------CCeEEEEcc
Confidence 3455678899999999999999999987 3 469999999999988888887765 379999999
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+... +++..++||+|++... .......++.++.++|||||.+++.
T Consensus 135 ~~~~~~-~~~~~~~~D~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 135 ARHPHK-YRMLIAMVDVIFADVA-----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp TTCGGG-GGGGCCCEEEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCChhh-hcccCCcEEEEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 987421 1345678999998642 2334456688899999999999863
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-13 Score=127.58 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh------CCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD------NDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~------~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
.++.+|||||||+|.++..+|+. +...|+|||+|+.|++.|++++.. .++ .+|.++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~--------------~nv~~~~~d 110 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF--------------QNIACLRSN 110 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC--------------TTEEEEECC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC--------------CeEEEEECc
Confidence 46789999999999999999987 445999999999999999988753 333 579999999
Q ss_pred hhh-cccccCCCCCceeEEEeccccccccChh--------hHHHHHHHHhccccCCcEEeccCc
Q 010913 369 VEE-LGESMQIQPHSVDVLVSEWMGYCLLYES--------MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 369 ~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~--------~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+ +.. .++.++||.|++.. ...+.. ....++..+.++|||||.|++.+.
T Consensus 111 ~~~~l~~--~~~~~~~D~v~~~~---~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 111 AMKHLPN--FFYKGQLTKMFFLF---PDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp TTTCHHH--HCCTTCEEEEEEES---CC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHhhhh--hCCCcCeeEEEEeC---CCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 986 321 15678999998532 111110 014689999999999999986543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-13 Score=127.00 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..+..+++. + ..+|+|+|+++.+++.|+++++..++ .++++++++++.+..
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~ 129 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-------------SDKIGLRLSPAKDTL 129 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-------------TTTEEEEESCHHHHH
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-------------CCceEEEeCCHHHHH
Confidence 46789999999999999999987 3 46999999999999999999999887 357999999997652
Q ss_pred cccCC--CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQI--QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~--~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..++. ..++||+|++.. .......++..+.++|||||+|+++..
T Consensus 130 ~~~~~~~~~~~fD~v~~~~------~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 130 AELIHAGQAWQYDLIYIDA------DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp HHHHTTTCTTCEEEEEECS------CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHhhhccCCCCccEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 11110 117899999643 234567789999999999999985443
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-13 Score=124.71 Aligned_cols=107 Identities=25% Similarity=0.308 Sum_probs=86.1
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
+..... .++.+|||+|||+|.++..+++.| .+|+|+|+|+.+++.|+++. ..++.+|
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~---------------------~~~~~~d 81 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL---------------------DHVVLGD 81 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS---------------------SEEEESC
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC---------------------CcEEEcc
Confidence 444444 678999999999999999999987 59999999999998877541 3678889
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+.. .+++.++||+|++.. ++.+..++..++..+.++|+|||.+++...
T Consensus 82 ~~~~~--~~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 82 IETMD--MPYEEEQFDCVIFGD---VLEHLFDPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp TTTCC--CCSCTTCEEEEEEES---CGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred hhhcC--CCCCCCccCEEEECC---hhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 87643 246678999999754 555666778999999999999999996543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-13 Score=130.58 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=88.2
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCceEE
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.....+.++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++..+ |. +++++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~--------------~~v~~ 166 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI--------------GNVRT 166 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC--------------TTEEE
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC--------------CcEEE
Confidence 4556667788999999999999999999987 3459999999999999999999887 75 58999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+|+.+. ++.++||+|++.. +.+..++..+.++|||||.+++..+
T Consensus 167 ~~~d~~~~-----~~~~~fD~Vi~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 167 SRSDIADF-----ISDQMYDAVIADI--------PDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp ECSCTTTC-----CCSCCEEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred EECchhcc-----CcCCCccEEEEcC--------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99999873 5567899999742 2445788999999999999986544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=131.55 Aligned_cols=112 Identities=22% Similarity=0.150 Sum_probs=89.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.....++....+.++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|++++..+|+ .+
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~--------------~~ 127 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI--------------EN 127 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC--------------CS
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CC
Confidence 3444555666678899999999999999999998843 4799999999999999999998887 46
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++++.+|+.+.. .+.++||+|++..+...+ . ..+.++|||||++++..
T Consensus 128 v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~~~---~------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 128 VIFVCGDGYYGV----PEFSPYDVIFVTVGVDEV---P------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp EEEEESCGGGCC----GGGCCEEEEEECSBBSCC---C------HHHHHHEEEEEEEEEEB
T ss_pred eEEEECChhhcc----ccCCCeEEEEEcCCHHHH---H------HHHHHhcCCCcEEEEEE
Confidence 999999998752 235789999987643322 2 45678999999998653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=123.63 Aligned_cols=109 Identities=22% Similarity=0.233 Sum_probs=85.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.....++......++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++..++ ++.
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----------------~v~ 119 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN----------------NIK 119 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS----------------SEE
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC----------------CeE
Confidence 444556666667889999999999999999999998 599999999999999999875442 689
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+|+.+.. ...++||+|++... +.+.. ..+.++|||||.+++..
T Consensus 120 ~~~~d~~~~~----~~~~~fD~v~~~~~---~~~~~------~~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 120 LILGDGTLGY----EEEKPYDRVVVWAT---APTLL------CKPYEQLKEGGIMILPI 165 (231)
T ss_dssp EEESCGGGCC----GGGCCEEEEEESSB---BSSCC------HHHHHTEEEEEEEEEEE
T ss_pred EEECCccccc----ccCCCccEEEECCc---HHHHH------HHHHHHcCCCcEEEEEE
Confidence 9999998731 23578999997653 32222 35788999999998554
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-13 Score=140.33 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=91.1
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
..+.+.++....+.++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++ ++.. ...
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~------------~~~ 155 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRV------------RTD 155 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCE------------ECS
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCc------------cee
Confidence 45667777877778899999999999999999999988 999999999999988765 3310 011
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.+..++...+ +++.++||+|++.. ++.|..++..++.++.++|||||++++...
T Consensus 156 ~~~~~~~~~l----~~~~~~fD~I~~~~---vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 156 FFEKATADDV----RRTEGPANVIYAAN---TLCHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp CCSHHHHHHH----HHHHCCEEEEEEES---CGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eechhhHhhc----ccCCCCEEEEEECC---hHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1233444444 35678999999765 666667899999999999999999996543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-13 Score=129.01 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.|+ +|+|+|+|+.+++.|+++. .+++++++|+.+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------------------~~~~~~~~d~~~~--- 103 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-------------------PHADVYEWNGKGE--- 103 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-------------------TTSEEEECCSCSS---
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-------------------CCceEEEcchhhc---
Confidence 5789999999999999999999977 9999999999999998871 4789999999543
Q ss_pred cCCC-CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~-~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++++ .++||+|++. .++..++.++.++|||||.++
T Consensus 104 ~~~~~~~~fD~v~~~---------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 104 LPAGLGAPFGLIVSR---------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CCTTCCCCEEEEEEE---------SCCSGGGGGHHHHEEEEEEEE
T ss_pred cCCcCCCCEEEEEeC---------CCHHHHHHHHHHHcCCCcEEE
Confidence 2566 7899999975 244567888999999999998
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-13 Score=129.70 Aligned_cols=107 Identities=19% Similarity=0.152 Sum_probs=79.6
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHH----HhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIA----KDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~----~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.+.+.+ ...++ +++.++++|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~--------------~~v~~~~~d~ 90 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL--------------PNLLYLWATA 90 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC--------------TTEEEEECCS
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC--------------CceEEEecch
Confidence 4678999999999999999999983 459999999999888543333 23443 5899999999
Q ss_pred hhcccccCCCCCceeEEEecccccccc--ChhhHHHHHHHHhccccCCcEEec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLL--YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~--~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++ +++.++ |.|+.......++ +..++..++.++.++|||||.+++
T Consensus 91 ~~l----~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (218)
T 3mq2_A 91 ERL----PPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV 138 (218)
T ss_dssp TTC----CSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred hhC----CCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence 987 466666 7776321111111 333447899999999999999986
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-13 Score=127.30 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=86.9
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhC---CCCCCCCCCCCCCCCCC
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDN---DFWWDRPQSEGNINNAG 360 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~---gl~~~~~~~~~~~~~~~ 360 (497)
..++......++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++++..+ ++. .
T Consensus 41 ~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~-------------~ 107 (250)
T 1o9g_A 41 QRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT-------------A 107 (250)
T ss_dssp HHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH-------------H
T ss_pred HHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc-------------c
Confidence 34444443346789999999999999999886 2348999999999999999988765 431 1
Q ss_pred c-------------------------eE-------------EEecchhhcccccCC----CCCceeEEEeccccccccC-
Q 010913 361 K-------------------------ME-------------VVQGMVEELGESMQI----QPHSVDVLVSEWMGYCLLY- 397 (497)
Q Consensus 361 ~-------------------------i~-------------~i~gd~~~l~~~l~~----~~~~fDvIvs~~~~~~l~~- 397 (497)
+ ++ ++++|+.+.. +. ...+||+|++++.......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~~fD~Iv~npp~~~~~~~ 184 (250)
T 1o9g_A 108 RELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPR---ALSAVLAGSAPDVVLTDLPYGERTHW 184 (250)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGG---GHHHHHTTCCCSEEEEECCGGGSSSS
T ss_pred cchhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeeccccccc---ccccccCCCCceEEEeCCCeeccccc
Confidence 1 55 9999987642 11 3458999999853222221
Q ss_pred -----hhhHHHHHHHHhccccCCcEEec
Q 010913 398 -----ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 398 -----~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
......++..+.++|+|||++++
T Consensus 185 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 185 EGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred cccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 24567899999999999999985
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=131.31 Aligned_cols=124 Identities=23% Similarity=0.138 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..+...++......++.+|||+|||+|.+++.++..+ ..+|+|+|+++.+++.|+++++.+|+ .
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~--------------~ 254 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL--------------S 254 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC--------------T
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC--------------C
Confidence 3456666666777889999999999999999999974 35899999999999999999999987 3
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEecccccc-ccC----hhhHHHHHHHHhccccCCcEEeccCce
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYC-LLY----ESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~-l~~----~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+++++++|+.++. .+...||+|++++.... +.. ......++..+.++|||||.+++.+++
T Consensus 255 ~i~~~~~D~~~~~----~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 255 WIRFLRADARHLP----RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp TCEEEECCGGGGG----GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ceEEEeCChhhCc----cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 7999999999874 45567999999863211 111 122367889999999999999865543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=121.40 Aligned_cols=111 Identities=19% Similarity=0.132 Sum_probs=86.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-C-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-A-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....++....+.++.+|||||||+|.++..+++.+ . .+|+|+|+|+.+++.|++++...++ .++
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~v 130 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY--------------DNV 130 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC--------------TTE
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCe
Confidence 34455555567789999999999999999999984 2 5999999999999999999887776 469
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++.+|+.... ...++||+|++... +.+.. ..+.++|||||.+++..
T Consensus 131 ~~~~~d~~~~~----~~~~~fD~v~~~~~---~~~~~------~~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 131 IVIVGDGTLGY----EPLAPYDRIYTTAA---GPKIP------EPLIRQLKDGGKLLMPV 177 (215)
T ss_dssp EEEESCGGGCC----GGGCCEEEEEESSB---BSSCC------HHHHHTEEEEEEEEEEE
T ss_pred EEEECCcccCC----CCCCCeeEEEECCc---hHHHH------HHHHHHcCCCcEEEEEE
Confidence 99999985431 12568999997653 32222 36789999999998543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=125.27 Aligned_cols=110 Identities=25% Similarity=0.261 Sum_probs=91.1
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCceE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~i~ 363 (497)
..++....+.++.+|||+|||+|.++..+++. | ..+|+++|+++.+++.|++++..+ |. +++.
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~--------------~~v~ 151 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--------------ENVR 151 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC--------------CCEE
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--------------CCEE
Confidence 34555566788999999999999999999998 5 459999999999999999998776 63 5899
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+|+.+. +++.++||+|++.+ ..+..++..+.++|+|||.+++..
T Consensus 152 ~~~~d~~~~----~~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 152 FHLGKLEEA----ELEEAAYDGVALDL--------MEPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp EEESCGGGC----CCCTTCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EEECchhhc----CCCCCCcCEEEECC--------cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 999999876 36678899999743 234568899999999999998544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=129.11 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=91.9
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||+|||+|..+..+++. |..+|+|+|+|+.+++.++++++.+|+ .++.++.+|+.+
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~--------------~~v~~~~~D~~~ 145 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV--------------LNTIIINADMRK 145 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC--------------CSEEEEESCHHH
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC--------------CcEEEEeCChHh
Confidence 3568899999999999999999985 546999999999999999999999887 489999999988
Q ss_pred cccccCCCCCceeEEEeccccccc--c-------------ChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCL--L-------------YESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l--~-------------~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+........++||+|++...-..+ . .......+|..+.++|||||.++.++|++
T Consensus 146 ~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 146 YKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 741000025689999986421111 0 11344788999999999999999887766
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=125.06 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...++ .+++.++.+|+.+..
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~- 118 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-------------ESRIELLFGDALQLG- 118 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-------------TTTEEEECSCGGGSH-
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEECCHHHHH-
Confidence 46789999999999999999988 345999999999999999999998887 247999999998742
Q ss_pred ccCCC--CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQ--PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~--~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.. .++||+|++.. .. .....++..+.++|+|||+++++..
T Consensus 119 --~~~~~~~~fD~I~~~~---~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 119 --EKLELYPLFDVLFIDA---AK---GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp --HHHTTSCCEEEEEEEG---GG---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred --HhcccCCCccEEEECC---CH---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 112 57899999754 22 3567899999999999999997643
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=127.58 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+|||+|.+++.+|+.|+.+|+|+|+++.+++.++++++.|++. ++++++++|+.++
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~-------------~~v~~~~~D~~~~--- 187 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-------------DRMSAYNMDNRDF--- 187 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-------------TTEEEECSCTTTC---
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC-------------CcEEEEeCcHHHh---
Confidence 679999999999999999999999889999999999999999999999983 6899999999887
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+.+.||.|+++.+... ..++..+.++|||||.|.
T Consensus 188 --~~~~~~D~Vi~~~p~~~-------~~~l~~a~~~lk~gG~ih 222 (278)
T 3k6r_A 188 --PGENIADRILMGYVVRT-------HEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp --CCCSCEEEEEECCCSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred --ccccCCCEEEECCCCcH-------HHHHHHHHHHcCCCCEEE
Confidence 34678999996643222 235566678999999875
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=132.82 Aligned_cols=116 Identities=19% Similarity=0.178 Sum_probs=91.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.++......++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++..+++ .+
T Consensus 183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~---------------~~ 247 (343)
T 2pjd_A 183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV---------------EG 247 (343)
T ss_dssp HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC---------------CC
T ss_pred HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---------------CC
Confidence 3455566655445678999999999999999999864 4999999999999999999998876 46
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccc--cChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l--~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++.+|+... ..++||+|+++++.+.. .+......++..+.++|||||.+++
T Consensus 248 ~~~~~d~~~~------~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 248 EVFASNVFSE------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp EEEECSTTTT------CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEcccccc------ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 7788888653 36789999998642211 1235678899999999999999984
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-12 Score=120.54 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=84.1
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
....+.++.+|||+|||+|.++..+++. |. .+|+|+|+|+.+++.++++++.+ .+++++.+|
T Consensus 67 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----------------~~v~~~~~d 130 (227)
T 1g8a_A 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----------------RNIVPILGD 130 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----------------TTEEEEECC
T ss_pred HhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----------------CCCEEEEcc
Confidence 3344678899999999999999999987 53 69999999999999999887543 379999999
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+.... ....++||+|++... .......++..+.++|||||.+++.
T Consensus 131 ~~~~~~~-~~~~~~~D~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 131 ATKPEEY-RALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp TTCGGGG-TTTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcchh-hcccCCceEEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 9874210 112458999997642 2233445699999999999999843
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=130.58 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=90.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.+|.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.++++++.+|+ .++.++++|+..
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~--------------~~v~~~~~D~~~ 180 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV--------------LNVILFHSSSLH 180 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC--------------CSEEEESSCGGG
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC--------------CeEEEEECChhh
Confidence 4578899999999999999999986 335999999999999999999998887 479999999988
Q ss_pred cccccCCCCCceeEEEeccc--ccc-ccChh----------------hHHHHHHHHhccccCCcEEeccCcee
Q 010913 372 LGESMQIQPHSVDVLVSEWM--GYC-LLYES----------------MLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~--~~~-l~~~~----------------~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+. ...++||+|++... +.. +...+ ....+|..+.++|||||+++.++|++
T Consensus 181 ~~----~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 181 IG----ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp GG----GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cc----cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 74 23568999998532 111 11111 12578999999999999999887765
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=129.17 Aligned_cols=121 Identities=20% Similarity=0.186 Sum_probs=90.2
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
++.+.+.++......++.+|||+|||+|.+++.+++.+..+|+|+|+|+.+++.|++++..+++. ++
T Consensus 108 te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~-------------~~ 174 (284)
T 1nv8_A 108 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS-------------DR 174 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT-------------TS
T ss_pred HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------Cc
Confidence 44455555443322366799999999999999999884349999999999999999999999872 46
Q ss_pred eEEEecchhhcccccCCCCCce---eEEEecccccc--------ccChhh--------HHHHHHHHh-ccccCCcEEecc
Q 010913 362 MEVVQGMVEELGESMQIQPHSV---DVLVSEWMGYC--------LLYESM--------LSSVLFARD-QWLKPGGAILPD 421 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~f---DvIvs~~~~~~--------l~~~~~--------l~~vL~~~~-r~LkpgG~li~~ 421 (497)
++++++|+.+. ++ ++| |+|+|++.... +.|++. ...++..+. +.|+|||.+++.
T Consensus 175 v~~~~~D~~~~-----~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 175 FFVRKGEFLEP-----FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp EEEEESSTTGG-----GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred eEEEECcchhh-----cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 99999999874 22 478 99999842110 002221 126888999 999999999854
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=142.16 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..++.+|||||||+|.++..+++.|. .+|+|||+|+.|++.|++++...... ......+++++++|+.++
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA--------kr~gl~nVefiqGDa~dL 790 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK--------EACNVKSATLYDGSILEF 790 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT--------TCSSCSEEEEEESCTTSC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch--------hhcCCCceEEEECchHhC
Confidence 34789999999999999999999862 59999999999999999876532100 000115899999999987
Q ss_pred ccccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCce
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
. ++.++||+|++.. ++.|..+ ...++.++.++|||| .+++.+++
T Consensus 791 p----~~d~sFDlVV~~e---VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 791 D----SRLHDVDIGTCLE---VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp C----TTSCSCCEEEEES---CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred C----cccCCeeEEEEeC---chhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 4 6778999999754 4444333 456899999999999 66655443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=143.46 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+|||||.+++.+++.|+.+|++||+|+.+++.|++++..||+. .++++++++|+.++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~------------~~~v~~i~~D~~~~l-- 603 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT------------GRAHRLIQADCLAWL-- 603 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC------------STTEEEEESCHHHHH--
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------ccceEEEecCHHHHH--
Confidence 468999999999999999999999988999999999999999999999982 147999999998852
Q ss_pred cCCCCCceeEEEecccccc--------ccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYC--------LLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~--------l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+...++||+|++++..+. +........++..+.++|+|||+|+++++
T Consensus 604 -~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 604 -REANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp -HHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -HhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 234578999999864322 22235667889999999999999996554
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=124.51 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhC--------CCCCCCCCCCCCCCCCCceEEE
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDN--------DFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~--------gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.++.+|||||||+|.+++.+++.+. .+|+|||+|+.+++.|++++..+ ++ .++.++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------------~nv~~~ 112 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF--------------QNINVL 112 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT--------------TTEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC--------------CcEEEE
Confidence 35678999999999999999999864 48999999999999999988765 54 579999
Q ss_pred ecchhh-cccccCCCCCceeEEEeccccccccChh--------hHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEE-LGESMQIQPHSVDVLVSEWMGYCLLYES--------MLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~--------~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+|+.+ +.. .++.+++|.|+..... .... ....++..+.++|+|||.|++
T Consensus 113 ~~D~~~~l~~--~~~~~~~d~v~~~~p~---p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 113 RGNAMKFLPN--FFEKGQLSKMFFCFPD---PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp ECCTTSCGGG--TSCTTCEEEEEEESCC---CC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred eccHHHHHHH--hccccccCEEEEECCC---cccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 999987 321 1567889999843211 1000 014789999999999999985
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=127.44 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.++.+|||+|||+|.+++.+|+. +..+|+|+|+|+.+++.|+++++.|++ .++.++.+|+.++.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l--------------~~~~~~~~d~~~~~ 182 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL--------------NNVIPILADNRDVE 182 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC--------------SSEEEEESCGGGCC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCEEEEECChHHcC
Confidence 567899999999999999999998 466999999999999999999999987 47889999998862
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
. ..+||+|++.+.. ....++..+.+.|+|||++++
T Consensus 183 ----~-~~~~D~Vi~d~p~-------~~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 183 ----L-KDVADRVIMGYVH-------KTHKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp ----C-TTCEEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEE
T ss_pred ----c-cCCceEEEECCcc-------cHHHHHHHHHHHcCCCCEEEE
Confidence 2 5689999977532 345578888899999999983
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=126.93 Aligned_cols=111 Identities=21% Similarity=0.224 Sum_probs=91.6
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..++....+.++.+|||+|||+|.++..+++. | ..+|+++|+|+.+++.|++++..+++ .+++++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~v~~ 168 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-------------IERVTI 168 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-------------GGGEEE
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-------------CCCEEE
Confidence 34555567788999999999999999999988 5 46999999999999999999988876 247999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+|+.+. ++.++||+|++.+ +.+..++..+.++|+|||.+++..+
T Consensus 169 ~~~d~~~~-----~~~~~~D~V~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 169 KVRDISEG-----FDEKDVDALFLDV--------PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp ECCCGGGC-----CSCCSEEEEEECC--------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred EECCHHHc-----ccCCccCEEEECC--------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99999875 4567899999753 2335688889999999999985443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-13 Score=129.66 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..++.+|++ + ..+|+|+|+++.+++.|+++++..|+ .++|+++.+|+.+..
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-------------~~~i~~~~gda~~~l 125 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-------------EHKIKLRLGPALDTL 125 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-------------TTTEEEEESCHHHHH
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEEcCHHHHH
Confidence 46789999999999999999986 2 45999999999999999999999887 358999999997753
Q ss_pred cccCC--CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQI--QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~--~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..+.- ..++||+|++.. .......++..+.++|||||+|+++..
T Consensus 126 ~~~~~~~~~~~fD~V~~d~------~~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 126 HSLLNEGGEHQFDFIFIDA------DKTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp HHHHHHHCSSCEEEEEEES------CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHhhccCCCCEeEEEEcC------ChHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 11000 147899999653 134567789999999999999996544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=133.69 Aligned_cols=116 Identities=26% Similarity=0.271 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.+++.+++.|+.+|+|+|+|+.+++.|++++..|++. ++++++.+|+.++...
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~-------------~~v~~~~~d~~~~~~~ 282 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-------------DRMKFIVGSAFEEMEK 282 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-------------GGEEEEESCHHHHHHH
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------ccceEEECCHHHHHHH
Confidence 378999999999999999999998889999999999999999999999872 3899999999876311
Q ss_pred cCCCCCceeEEEeccccccc------cChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 376 MQIQPHSVDVLVSEWMGYCL------LYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l------~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+.....+||+|++.+..+.. ........++..+.++|+|||.++..+++
T Consensus 283 ~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 283 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred HHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 11125689999987643221 11145677889999999999998865553
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=121.05 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|++++...++ .++++++.+|+.+..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~ 121 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-------------IDRVELQVGDPLGIA 121 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-------------GGGEEEEESCHHHHH
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-------------CceEEEEEecHHHHh
Confidence 35689999999999999999987 3 45999999999999999999988776 247999999998752
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+...+ ||+|++.. .......++..+.++|||||+++++..
T Consensus 122 ---~~~~~-fD~v~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 122 ---AGQRD-IDILFMDC------DVFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ---TTCCS-EEEEEEET------TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ---ccCCC-CCEEEEcC------ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 23345 99999653 124567899999999999999996543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=141.30 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|+++..+|+.|+ .|+|||+|+.+++.|+..+..+|. -+|.+.+++++++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~--------------~~~~~~~~~~~~~~~- 128 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPD--------------FAAEFRVGRIEEVIA- 128 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTT--------------SEEEEEECCHHHHHH-
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCC--------------CceEEEECCHHHHhh-
Confidence 4678999999999999999999999 899999999999999999988764 379999999998742
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHH--HHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSV--LFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~v--L~~~~r~LkpgG~li 419 (497)
.+.+++||+|+|.. ++.|..++..+ +..+.+.|+++|..+
T Consensus 129 -~~~~~~fD~v~~~e---~~ehv~~~~~~~~~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 129 -ALEEGEFDLAIGLS---VFHHIVHLHGIDEVKRLLSRLADVTQAV 170 (569)
T ss_dssp -HCCTTSCSEEEEES---CHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred -hccCCCccEEEECc---chhcCCCHHHHHHHHHHHHHhcccccee
Confidence 24578999999866 44454554433 344566777777644
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-12 Score=121.90 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=89.8
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.+.....+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++...+++ ..++.++.+
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~ 147 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNL-------------GKNVKFFNV 147 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTC-------------CTTEEEECS
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC-------------CCcEEEEEc
Confidence 4445556678999999999999999999998 44999999999999999999988876 257999999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
|+.+.. ++..+||+|++.. ..+..++..+.++|+|||.+++...
T Consensus 148 d~~~~~----~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 148 DFKDAE----VPEGIFHAAFVDV--------REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp CTTTSC----CCTTCBSEEEECS--------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred Chhhcc----cCCCcccEEEECC--------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 998751 2567899999743 2345678888999999999985444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=118.40 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+.+|.+|||+|||+|..+..+|+. | ..+|+|+|+|+.|++.+.+.++.. .++.++.+|+.
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----------------~nv~~i~~Da~ 135 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----------------PNIFPLLADAR 135 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----------------TTEEEEECCTT
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----------------CCeEEEEcccc
Confidence 34789999999999999999999987 4 469999999999876555554432 37999999987
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
..... ....++||+|+++.. . ......++..+.++|||||.|++.
T Consensus 136 ~~~~~-~~~~~~~D~I~~d~a---~--~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 136 FPQSY-KSVVENVDVLYVDIA---Q--PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp CGGGT-TTTCCCEEEEEECCC---C--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhh-hccccceEEEEecCC---C--hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 65311 112468999998741 1 223334455667799999999855
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=121.47 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=91.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+.+|||||||+|.++..+++. +|+|+|+.+++.|+++ ++.++.+++.++ +
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~---------------------~~~~~~~d~~~~----~ 97 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR---------------------GVFVLKGTAENL----P 97 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT---------------------TCEEEECBTTBC----C
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc---------------------CCEEEEcccccC----C
Confidence 889999999999999988654 9999999999988765 368889998876 4
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEe---eecCCCCCCCccccccCccccccchH
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA---GFGRGGTSLPFWENVYGFTMSCVGRE 454 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~---~~~~~~~~~~fw~~v~g~~~~~~~~~ 454 (497)
++.++||+|++.. ++.+..++..+|..+.++|+|||.+++...+.... .+........++.....+....+...
T Consensus 98 ~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (219)
T 1vlm_A 98 LKDESFDFALMVT---TICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDL 174 (219)
T ss_dssp SCTTCEEEEEEES---CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHH
T ss_pred CCCCCeeEEEEcc---hHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHH
Confidence 6778999999765 55555778899999999999999998653321100 00000011112223333456667777
Q ss_pred HHhhhcC
Q 010913 455 VVQDAAG 461 (497)
Q Consensus 455 ~~~~~~~ 461 (497)
+...+|.
T Consensus 175 l~~~Gf~ 181 (219)
T 1vlm_A 175 MRKAGFE 181 (219)
T ss_dssp HHHTTCE
T ss_pred HHHCCCe
Confidence 7766654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=126.09 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=83.9
Q ss_pred HHHHHHHHhCCCC--CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 283 DSYRQAILENPSL--MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 283 ~~y~~~i~~~~~~--~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
..+...++..... .++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|++++..+++ .
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~ 115 (254)
T 2h00_A 49 IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-------------S 115 (254)
T ss_dssp HHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-------------T
T ss_pred HHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-------------C
Confidence 3344445544332 26789999999999999988876 234999999999999999999999887 2
Q ss_pred CceEEEecchhh-cccccCCC---CCceeEEEeccccccccCh------------hhHHHHHHHHhccccCCcEEec
Q 010913 360 GKMEVVQGMVEE-LGESMQIQ---PHSVDVLVSEWMGYCLLYE------------SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 360 ~~i~~i~gd~~~-l~~~l~~~---~~~fDvIvs~~~~~~l~~~------------~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++++++|+.+ +.. +++ .++||+|++++..+..... .....++..+.++|||||.+.+
T Consensus 116 ~~v~~~~~d~~~~~~~--~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 116 DLIKVVKVPQKTLLMD--ALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp TTEEEEECCTTCSSTT--TSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred ccEEEEEcchhhhhhh--hhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 469999999876 221 233 2689999998643221100 0112456788999999998764
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=132.84 Aligned_cols=115 Identities=22% Similarity=0.213 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCC-CCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF-WWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl-~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||+|.+++.+++.|+.+|+|||+|+.+++.|+++++.|++ . ++++++.+|+.++..
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~-------------~~v~~~~~D~~~~~~ 285 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-------------SKAEFVRDDVFKLLR 285 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG-------------GGEEEEESCHHHHHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-------------cceEEEECCHHHHHH
Confidence 47889999999999999999999888999999999999999999999986 3 379999999988631
Q ss_pred ccCCCCCceeEEEecccccc------ccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYC------LLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~------l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.+.....+||+|++.+..+. .........++..+.++|+|||+++++++
T Consensus 286 ~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 286 TYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp HHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 11111468999998764321 11124667889999999999999986554
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-12 Score=125.35 Aligned_cols=112 Identities=26% Similarity=0.307 Sum_probs=91.2
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhC-C-CCCCCCCCCCCCCCCCce
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDN-D-FWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~-g-l~~~~~~~~~~~~~~~~i 362 (497)
..++....+.++.+|||+|||+|.++..+++. | ..+|+++|+++.+++.|++++..+ | + ..++
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-------------~~~v 155 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-------------PDNW 155 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-------------CTTE
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-------------CCcE
Confidence 44555566788999999999999999999986 3 469999999999999999998776 4 3 1589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.++.+|+.+. +++.++||+|++.. ..+..++..+.++|+|||.+++..+
T Consensus 156 ~~~~~d~~~~----~~~~~~~D~v~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 156 RLVVSDLADS----ELPDGSVDRAVLDM--------LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp EEECSCGGGC----CCCTTCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred EEEECchHhc----CCCCCceeEEEECC--------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 9999999886 35678899999743 2344688999999999999986544
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-13 Score=127.78 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCC-HHHHHHH---HHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEAS-EKMAAVA---TQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S-~~~i~~A---~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
.++.+|||||||+|.++..+++. +..+|+|||+| +.|++.| ++++...++ .++.++.++++
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~--------------~~v~~~~~d~~ 88 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL--------------SNVVFVIAAAE 88 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC--------------SSEEEECCBTT
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC--------------CCeEEEEcCHH
Confidence 46789999999999999999965 33489999999 7777666 777666666 57999999998
Q ss_pred hcccccCCCCCceeEEEeccccccc-cC-hhhHHHHHHHHhccccCCcEEec
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCL-LY-ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l-~~-~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.. .+ .+.+|.|++......+ .+ ......+|.++.|+|||||.+++
T Consensus 89 ~l~~--~~-~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 89 SLPF--EL-KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp BCCG--GG-TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred Hhhh--hc-cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 8731 11 2556666643210000 00 01235689999999999999986
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=125.68 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++++|||||||+|..++.++++ + ..+|+++|+++.+++.|+++++..|+ .++|+++.+|+.+..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-------------~~~i~~~~gda~~~l 144 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-------------DHKIDFREGPALPVL 144 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-------------GGGEEEEESCHHHHH
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCCeEEEECCHHHHH
Confidence 46789999999999999999987 3 35999999999999999999998887 258999999997752
Q ss_pred cccCC---CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 374 ESMQI---QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 374 ~~l~~---~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
..+.. +.++||+|++.. . ......++..+.++|||||+|+++.
T Consensus 145 ~~l~~~~~~~~~fD~V~~d~---~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 145 DEMIKDEKNHGSYDFIFVDA---D---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp HHHHHSGGGTTCBSEEEECS---C---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred HHHHhccCCCCCEEEEEEcC---c---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 10100 157899999753 1 2356778999999999999998654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=130.34 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+|||||.+++.+|+.|+. |+|||+|+.+++.|+++++.|++ ...+.++|+.++..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~---------------~~~~~~~D~~~~l~- 275 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL---------------RVDIRHGEALPTLR- 275 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTC---------------CCEEEESCHHHHHH-
T ss_pred cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCC---------------CCcEEEccHHHHHH-
Confidence 36899999999999999999999985 99999999999999999999987 23566999987631
Q ss_pred cCCCCCceeEEEecccccccc------ChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 376 MQIQPHSVDVLVSEWMGYCLL------YESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~------~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
...+.||+|++++..+... .......++..+.++|+|||.|+..+++
T Consensus 276 --~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 276 --GLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp --TCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred --HhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2234499999876432110 0234467888899999999999855553
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.8e-12 Score=122.67 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=85.5
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCH----hHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHHh----CCCCCC-
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGI----LSLFAAQA-G----ASRVIAVEASEKMAAVATQIAKD----NDFWWD- 348 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~----ls~~la~~-G----~~~V~gvD~S~~~i~~A~~~~~~----~gl~~~- 348 (497)
....+.++.. .++.+|||+|||||. +++.+++. | ..+|+|+|+|+.|++.|++.+.. .++...
T Consensus 94 ~~l~~~llp~---~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~ 170 (274)
T 1af7_A 94 PILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQ 170 (274)
T ss_dssp HHHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHH
T ss_pred HHHHHHccCC---CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHH
Confidence 3344444433 246799999999998 67777765 4 13899999999999999986421 000000
Q ss_pred --------CC----CCCCCCCCCCceEEEecchhhcccccCCC-CCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 349 --------RP----QSEGNINNAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 349 --------~~----~~~~~~~~~~~i~~i~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
.. ...+......+|.|.++|+.+. +++ .++||+|+|..+...+ .......++..+.++|+||
T Consensus 171 ~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~----~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pg 245 (274)
T 1af7_A 171 LQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK----QYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPD 245 (274)
T ss_dssp HHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS----SCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEE
T ss_pred HHHHhhccccCCCCceeechhhcccCeEEecccCCC----CCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCC
Confidence 00 0000000113699999999874 244 5789999996532222 3445689999999999999
Q ss_pred cEEecc
Q 010913 416 GAILPD 421 (497)
Q Consensus 416 G~li~~ 421 (497)
|.|++.
T Consensus 246 G~L~lg 251 (274)
T 1af7_A 246 GLLFAG 251 (274)
T ss_dssp EEEEEC
T ss_pred cEEEEE
Confidence 999853
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=122.41 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=87.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++++|||||||+|..++.++++ + ..+|+++|+++.+++.|++++...|+. ++|+++.+|+.+..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-------------~~i~~~~gda~~~l 135 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-------------HKINFIESDAMLAL 135 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-------------GGEEEEESCHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CcEEEEEcCHHHHH
Confidence 46789999999999999999987 3 459999999999999999999988872 57999999987752
Q ss_pred cccC---CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQ---IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~---~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..+. .+.++||+|++.. .......++..+.++|+|||+++.+..
T Consensus 136 ~~l~~~~~~~~~fD~I~~d~------~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 136 DNLLQGQESEGSYDFGFVDA------DKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp HHHHHSTTCTTCEEEEEECS------CGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHHhccCCCCCcCEEEECC------chHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 1110 0257899999653 234567889999999999999996554
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=121.32 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..++.+++. + ..+|+++|+++.+++.|++++..+|+ .++++++.+|+.+..
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-------------~~~i~~~~~d~~~~~ 134 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-------------EHKIDLRLKPALETL 134 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-------------TTTEEEEESCHHHHH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-------------CCeEEEEEcCHHHHH
Confidence 46789999999999999999987 3 46999999999999999999998887 358999999987652
Q ss_pred cccCCC--CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 374 ESMQIQ--PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 374 ~~l~~~--~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
..++.. .++||+|++... ......++..+.++|+|||+++++.
T Consensus 135 ~~~~~~~~~~~~D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 135 DELLAAGEAGTFDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp HHHHHTTCTTCEEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHhcCCCCCccEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 111111 168999997642 2345678999999999999998654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-12 Score=122.35 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++..+|+ .++++++.+++.+..
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-------------~~~i~~~~~d~~~~l 137 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-------------AEKISLRLGPALATL 137 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-------------GGGEEEEESCHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEEcCHHHHH
Confidence 45789999999999999999987 3 35999999999999999999988876 247999999986642
Q ss_pred cccCCCC--CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQIQP--HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~~~--~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..++... ++||+|++... ......++..+.++|+|||+|+++..
T Consensus 138 ~~l~~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 138 EQLTQGKPLPEFDLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp HHHHTSSSCCCEEEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred HHHHhcCCCCCcCEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 1122223 78999996531 24567789999999999999996544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=121.78 Aligned_cols=108 Identities=23% Similarity=0.271 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++..+|+. +++.++.+|+.+..
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-------------~~v~~~~~d~~~~~ 125 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-------------NKIFLKLGSALETL 125 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-------------GGEEEEESCHHHHH
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CCEEEEECCHHHHH
Confidence 46789999999999999999988 3 459999999999999999999988872 46999999987642
Q ss_pred ccc-----------CCCC--CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 374 ESM-----------QIQP--HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 374 ~~l-----------~~~~--~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
..+ .++. ++||+|++.. .......++..+.++|+|||+++++.
T Consensus 126 ~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~------~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 126 QVLIDSKSAPSWASDFAFGPSSIDLFFLDA------DKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHHHCSSCCGGGTTTCCSTTCEEEEEECS------CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHhhcccccccccccCCCCCcCEEEEeC------CHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 101 1222 7899999653 23456688999999999999998644
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=120.43 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=83.5
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
...++....+.++.+|||||||+|.++..+++.+..+|+|+|+++.+++.|++++...++ .++.++
T Consensus 80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~v~~~ 145 (235)
T 1jg1_A 80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV--------------KNVHVI 145 (235)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC--------------CSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEE
Confidence 334444446678899999999999999999998425999999999999999999988887 469999
Q ss_pred ecchhhcccccCCCC-CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 366 QGMVEELGESMQIQP-HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~-~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.+|+.. +++. .+||+|++... +.+. ...+.+.|||||++++..
T Consensus 146 ~~d~~~-----~~~~~~~fD~Ii~~~~---~~~~------~~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 146 LGDGSK-----GFPPKAPYDVIIVTAG---APKI------PEPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp ESCGGG-----CCGGGCCEEEEEECSB---BSSC------CHHHHHTEEEEEEEEEEE
T ss_pred ECCccc-----CCCCCCCccEEEECCc---HHHH------HHHHHHhcCCCcEEEEEE
Confidence 999832 2333 35999997652 2222 135678999999998544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-12 Score=122.82 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCC---CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 297 KGAVVMDIGCGT---GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 297 ~~~~VLDvGCGt---G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
...+|||||||+ |.++..+++. +..+|++||+|+.|++.|++++... ++++++.+|+.+.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~----------------~~v~~~~~D~~~~ 140 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD----------------PNTAVFTADVRDP 140 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC----------------TTEEEEECCTTCH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC----------------CCeEEEEeeCCCc
Confidence 447999999999 9887777665 3349999999999999999987432 4799999999764
Q ss_pred ccc-------cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GES-------MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~-------l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
... -.++..+||+|++..+.+++... .+..+|.++.++|+|||.|++...
T Consensus 141 ~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 141 EYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhccchhhccCCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 210 01333589999976644333222 588999999999999999986543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-12 Score=130.55 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=89.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++++..|++ .+++++++|+.++...+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~--------------~~~~~~~~d~~~~~~~~ 273 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL--------------GNVRVLEANAFDLLRRL 273 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC--------------TTEEEEESCHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC--------------CCceEEECCHHHHHHHH
Confidence 7889999999999999999998 56999999999999999999999997 45999999998863111
Q ss_pred CCCCCceeEEEecccccccc------ChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 377 QIQPHSVDVLVSEWMGYCLL------YESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~------~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.....+||+|++.+..+... .......++..+.++|+|||++++.+++
T Consensus 274 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 274 EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11256899999876432211 1144567889999999999999866553
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=116.92 Aligned_cols=107 Identities=23% Similarity=0.322 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+.++.+|||||||+|.++..+++. |. .+|+|+|+++.+++.|++++..+++. ....+++.++.+|+...
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---------~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT---------LLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH---------HHHTSSEEEEESCGGGC
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc---------ccCCCcEEEEECCcccC
Confidence 568899999999999999999987 53 49999999999999999998775420 00014799999998764
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
. ...++||+|++... +. .++..+.++|||||++++..+
T Consensus 146 ~----~~~~~fD~i~~~~~---~~------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 146 Y----AEEAPYDAIHVGAA---AP------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp C----GGGCCEEEEEECSB---BS------SCCHHHHHTEEEEEEEEEEES
T ss_pred c----ccCCCcCEEEECCc---hH------HHHHHHHHhcCCCcEEEEEEe
Confidence 2 34568999997642 21 133567899999999986543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-11 Score=111.84 Aligned_cols=101 Identities=26% Similarity=0.232 Sum_probs=80.2
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
...++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|++++..+++ +++++++|+.++.
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~~~~~d~~~~~ 110 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---------------KFKVFIGDVSEFN 110 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---------------SEEEEESCGGGCC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CEEEEECchHHcC
Confidence 3467899999999999999999999877899999999999999999877764 6899999998752
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+||+|++++..... .......++..+.++| ||.++
T Consensus 111 -------~~~D~v~~~~p~~~~-~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 111 -------SRVDIVIMNPPFGSQ-RKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp -------CCCSEEEECCCCSSS-STTTTHHHHHHHHHHC--SEEEE
T ss_pred -------CCCCEEEEcCCCccc-cCCchHHHHHHHHHhc--CcEEE
Confidence 489999998643222 2233456778888887 55544
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-11 Score=124.53 Aligned_cols=113 Identities=21% Similarity=0.192 Sum_probs=90.9
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
...+.......++.+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...++ .++|++
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l-------------~~~v~~ 256 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL-------------ADRCEI 256 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-------------TTTEEE
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc-------------CCceEE
Confidence 344555556677899999999999999999988 3449999999 9999999999988877 368999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhH--HHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l--~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.+ +++. +||+|++.. ++++..+. ..+|.++.++|+|||.|++.
T Consensus 257 ~~~d~~~-----~~p~-~~D~v~~~~---vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 257 LPGDFFE-----TIPD-GADVYLIKH---VLHDWDDDDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp EECCTTT-----CCCS-SCSEEEEES---CGGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred eccCCCC-----CCCC-CceEEEhhh---hhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999973 2444 899999655 44444443 47999999999999999843
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-12 Score=125.91 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++.+|||||||+|.++..+++. +..+|++||+++.+++.|++++.. +++. .++++++.+|+.+.
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~------------~~~v~~~~~D~~~~ 156 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD------------DPRAEIVIANGAEY 156 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG------------CTTEEEEESCHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC------------CCceEEEECcHHHH
Confidence 35689999999999999999998 667999999999999999998754 2221 25899999999875
Q ss_pred ccccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCce
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
. +...++||+|++........... ....++..+.++|||||+++...++
T Consensus 157 l---~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 157 V---RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp G---GGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred H---hhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 2 23467899999864221011111 1267889999999999999966543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.5e-13 Score=132.04 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=91.9
Q ss_pred hHHHhhhccccccccccchhHHh-------hhc------chhhhHHHH-HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHH
Q 010913 252 AKDIKKVNESYFGSYSSFGIHRE-------MIS------DKVRTDSYR-QAILENPSLMKGAVVMDIGCGTGILSLFAAQ 317 (497)
Q Consensus 252 ~~~~~~~~~~Yf~~y~~~~ih~~-------ml~------d~~r~~~y~-~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~ 317 (497)
+.+....+..||.+|...++++. |+. +.+....|. ..+.....+.++.+|||||||+|.++..+++
T Consensus 23 k~~l~~~~~~~f~~y~~~~i~e~~~~~a~~~l~~g~~~~~~~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~ 102 (305)
T 2p41_A 23 KSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGG 102 (305)
T ss_dssp HHHHHHSCHHHHHHHHHTTCEEEECHHHHHHHHTTCCSSCCSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHT
T ss_pred HHHHhHhhHHHHHHhcccCccccCHHHHHHHHHcCCCcCCccccHHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHh
Confidence 33344445668888887766552 342 222233332 2233444456789999999999999999999
Q ss_pred cCCCEEEEEeC----CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-chhhcccccCCCCCceeEEEecccc
Q 010913 318 AGASRVIAVEA----SEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-MVEELGESMQIQPHSVDVLVSEWMG 392 (497)
Q Consensus 318 ~G~~~V~gvD~----S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-d~~~l~~~l~~~~~~fDvIvs~~~~ 392 (497)
. .+|+|||+ ++.+++.+. ....+ .+++.++++ |+..+ +..+||+|+|.++.
T Consensus 103 ~--~~V~gvD~~~~~~~~~~~~~~--~~~~~--------------~~~v~~~~~~D~~~l------~~~~fD~V~sd~~~ 158 (305)
T 2p41_A 103 L--KNVREVKGLTKGGPGHEEPIP--MSTYG--------------WNLVRLQSGVDVFFI------PPERCDTLLCDIGE 158 (305)
T ss_dssp S--TTEEEEEEECCCSTTSCCCCC--CCSTT--------------GGGEEEECSCCTTTS------CCCCCSEEEECCCC
T ss_pred c--CCEEEEeccccCchhHHHHHH--hhhcC--------------CCCeEEEeccccccC------CcCCCCEEEECCcc
Confidence 8 37999999 553331100 00011 147899999 87764 35689999997643
Q ss_pred ccccChhhH---HHHHHHHhccccCCcEEecc
Q 010913 393 YCLLYESML---SSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 393 ~~l~~~~~l---~~vL~~~~r~LkpgG~li~~ 421 (497)
....+..+. ..+|..+.++|||||.+++.
T Consensus 159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 211111111 15788889999999999854
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=125.14 Aligned_cols=113 Identities=24% Similarity=0.211 Sum_probs=89.7
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.++....+.++.+|||||||+|.++..+++.. ..+++++|+ +.+++.|++++..+++ .++|+++
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-------------~~~v~~~ 237 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-------------ADRVTVA 237 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-------------TTTEEEE
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC-------------CCceEEE
Confidence 345555566788999999999999999999883 349999999 9999999999988887 3589999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccC
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.+|+.+. ++. .||+|++.. ++++..+ ...+|..+.++|||||.+++..
T Consensus 238 ~~d~~~~-----~~~-~~D~v~~~~---vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (374)
T 1qzz_A 238 EGDFFKP-----LPV-TADVVLLSF---VLLNWSDEDALTILRGCVRALEPGGRLLVLD 287 (374)
T ss_dssp ECCTTSC-----CSC-CEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCc-----CCC-CCCEEEEec---cccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9998752 333 499999765 4444333 3589999999999999887543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=124.29 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=89.3
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.++......++.+|||||||+|.++..+++. +..+|+++|+ +.+++.|++++...++ .++++++
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-------------~~~v~~~ 245 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-------------ADRMRGI 245 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-------------TTTEEEE
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC-------------CCCEEEE
Confidence 34555555677899999999999999999988 3349999999 9999999999988876 3579999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+|+.+. +++. +|+|++.. ++++.. ....+|.++.++|||||.+++
T Consensus 246 ~~d~~~~----~~~~--~D~v~~~~---vlh~~~d~~~~~~l~~~~~~L~pgG~l~i 293 (359)
T 1x19_A 246 AVDIYKE----SYPE--ADAVLFCR---ILYSANEQLSTIMCKKAFDAMRSGGRLLI 293 (359)
T ss_dssp ECCTTTS----CCCC--CSEEEEES---CGGGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eCccccC----CCCC--CCEEEEec---hhccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999875 2433 39999654 444433 378899999999999999974
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=124.44 Aligned_cols=110 Identities=19% Similarity=0.130 Sum_probs=88.6
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
+.......++.+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...++ .++|+++.+
T Consensus 161 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-------------~~~v~~~~~ 226 (332)
T 3i53_A 161 IAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL-------------SGRAQVVVG 226 (332)
T ss_dssp GGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-------------TTTEEEEEC
T ss_pred HHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc-------------CcCeEEecC
Confidence 334444556789999999999999999887 4458999999 9999999999988877 368999999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEecc
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~ 421 (497)
|+.+ +++. +||+|++.. ++++..+ ...+|.++.++|+|||.|++.
T Consensus 227 d~~~-----~~p~-~~D~v~~~~---vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 227 SFFD-----PLPA-GAGGYVLSA---VLHDWDDLSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp CTTS-----CCCC-SCSEEEEES---CGGGSCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCC-----CCCC-CCcEEEEeh---hhccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9973 2444 899999655 4444444 588999999999999999854
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-12 Score=125.66 Aligned_cols=116 Identities=17% Similarity=0.080 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC--CCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN--DFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~--gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||||||+|.++..++++|..+|++||+++.+++.|++++ .. ++. ....+...++++++.+|+.+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~-----~~~~~~~~~~v~~~~~D~~~~l 147 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLL-----EAMLNGKHEKAKLTIGDGFEFI 147 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHH-----HHHHTTCCSSEEEEESCHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccc-----cccccCCCCcEEEEECchHHHh
Confidence 457899999999999999999887679999999999999999987 32 210 0000001358999999987752
Q ss_pred cccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccC
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+. .++||+|++...... ..... ...++..+.++|+|||+++...
T Consensus 148 ---~~-~~~fD~Ii~d~~~~~-~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 148 ---KN-NRGFDVIIADSTDPV-GPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp ---HH-CCCEEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cc-cCCeeEEEECCCCCC-CcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 22 578999998653211 11111 2678899999999999999654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=125.81 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=90.9
Q ss_pred HHHhCCCCCC-CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMK-GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~-~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.++......+ +.+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...++ .++++++
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-------------~~~v~~~ 234 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL-------------GGRVEFF 234 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-------------GGGEEEE
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC-------------CCceEEE
Confidence 4555556666 899999999999999999987 4459999999 7799999999988876 3589999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+|+.+.. ++.++.||+|++.. ++++. .....+|..+.++|||||.+++
T Consensus 235 ~~d~~~~~---~~~~~~~D~v~~~~---vlh~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (352)
T 3mcz_A 235 EKNLLDAR---NFEGGAADVVMLND---CLHYFDAREAREVIGHAAGLVKPGGALLI 285 (352)
T ss_dssp ECCTTCGG---GGTTCCEEEEEEES---CGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred eCCcccCc---ccCCCCccEEEEec---ccccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99998753 12456799999755 44433 3458899999999999999984
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.2e-12 Score=123.97 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE-Eecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV-VQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~-i~gd~~~l~~ 374 (497)
.+|.+|||||||||.++..+++.|+.+|+|||+|+.|++.+.+. + .++.. ...++..+..
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~----------------~rv~~~~~~ni~~l~~ 144 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D----------------DRVRSMEQYNFRYAEP 144 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C----------------TTEEEECSCCGGGCCG
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C----------------cccceecccCceecch
Confidence 46889999999999999999999988999999999999875432 1 23333 3345544421
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++..+||+|++... +. .+..+|.++.++|||||.+++
T Consensus 145 -~~l~~~~fD~v~~d~s---f~---sl~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 145 -VDFTEGLPSFASIDVS---FI---SLNLILPALAKILVDGGQVVA 183 (291)
T ss_dssp -GGCTTCCCSEEEECCS---SS---CGGGTHHHHHHHSCTTCEEEE
T ss_pred -hhCCCCCCCEEEEEee---Hh---hHHHHHHHHHHHcCcCCEEEE
Confidence 0134456999997642 22 237789999999999999984
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-12 Score=126.03 Aligned_cols=114 Identities=23% Similarity=0.289 Sum_probs=83.6
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCCCCCCCCC
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQSEGNINN 358 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~-------gl~~~~~~~~~~~~~ 358 (497)
.++..+.+.++.+|||+|||+|.++..+++. |. .+|+|+|+++.+++.|++++... ++. ..
T Consensus 96 ~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~----------~~ 165 (336)
T 2b25_A 96 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE----------EW 165 (336)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS----------CC
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc----------cc
Confidence 3444446678999999999999999999997 65 69999999999999999998752 220 00
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
..+++++.+|+.+... +++.++||+|++... .+..++..+.++|||||.+++.
T Consensus 166 ~~~v~~~~~d~~~~~~--~~~~~~fD~V~~~~~--------~~~~~l~~~~~~LkpgG~lv~~ 218 (336)
T 2b25_A 166 PDNVDFIHKDISGATE--DIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAVY 218 (336)
T ss_dssp CCCEEEEESCTTCCC---------EEEEEECSS--------STTTTHHHHGGGEEEEEEEEEE
T ss_pred CCceEEEECChHHccc--ccCCCCeeEEEECCC--------CHHHHHHHHHHhcCCCcEEEEE
Confidence 2579999999987521 245678999997542 1123788899999999999843
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=117.84 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=81.8
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCC------CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGA------SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~------~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.+.++.+|||||||+|.++..+++.+. .+|+|+|+++.+++.|++++..+++. .....+++++.+
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------~~~~~~v~~~~~ 147 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE---------LLKIDNFKIIHK 147 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG---------GGSSTTEEEEEC
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcc---------ccccCCEEEEEC
Confidence 456789999999999999999998742 49999999999999999998877620 000147999999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
|+...........++||+|++... +.+ ++..+.++|||||++++..
T Consensus 148 d~~~~~~~~~~~~~~fD~I~~~~~---~~~------~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 148 NIYQVNEEEKKELGLFDAIHVGAS---ASE------LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp CGGGCCHHHHHHHCCEEEEEECSB---BSS------CCHHHHHHEEEEEEEEEEE
T ss_pred ChHhcccccCccCCCcCEEEECCc---hHH------HHHHHHHhcCCCcEEEEEE
Confidence 987741000023568999997652 221 3467789999999998543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=124.02 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=88.1
Q ss_pred HHHhCCCC--CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 288 AILENPSL--MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 288 ~i~~~~~~--~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.++..... .++.+|||||||+|.++..+++. +..+|+++|+| .+++.|++++...++ .+++++
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~-------------~~~v~~ 219 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV-------------ASRYHT 219 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC-------------GGGEEE
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC-------------CcceEE
Confidence 33333344 67889999999999999999988 33499999999 999999999888776 247999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEec
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.+|+.+.. ++. .||+|++.. ++++. .....+|..+.++|+|||.+++
T Consensus 220 ~~~d~~~~~----~~~-~~D~v~~~~---~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 269 (335)
T 2r3s_A 220 IAGSAFEVD----YGN-DYDLVLLPN---FLHHFDVATCEQLLRKIKTALAVEGKVIV 269 (335)
T ss_dssp EESCTTTSC----CCS-CEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EecccccCC----CCC-CCcEEEEcc---hhccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 999998752 433 499999754 44433 4567899999999999998874
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.2e-12 Score=122.71 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++|||||||+|.++..+++. |..+|++||+++.+++.|++++.. +++. .++++++.+|+.+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~------------~~rv~v~~~D~~~~ 141 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD------------DPRVDVQVDDGFMH 141 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT------------STTEEEEESCSHHH
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccC------------CCceEEEECcHHHH
Confidence 35789999999999999999998 777999999999999999998753 2331 26899999998875
Q ss_pred ccccCCCCCceeEEEeccccccccChh-hHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~-~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
- +...++||+|++........... ....++..+.++|+|||+++....
T Consensus 142 l---~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 142 I---AKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp H---HTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred H---hhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 2 23457899999875321110000 125688999999999999996643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=118.28 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=80.0
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHhCC-----CCCCCCCCCCCCCCCCc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GA------SRVIAVEASEKMAAVATQIAKDND-----FWWDRPQSEGNINNAGK 361 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~------~~V~gvD~S~~~i~~A~~~~~~~g-----l~~~~~~~~~~~~~~~~ 361 (497)
.+.++.+|||||||+|.++..+++. |. .+|+|+|+++.+++.|++++...+ . .+
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~--------------~~ 146 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS--------------GQ 146 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH--------------TS
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC--------------Cc
Confidence 3567899999999999999999985 53 599999999999999999887654 3 47
Q ss_pred eEEEecchhhcccccCCCC-CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 362 MEVVQGMVEELGESMQIQP-HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~-~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.++.+|+... ++. ++||+|++... +.+ ++..+.+.|||||++++..
T Consensus 147 v~~~~~d~~~~-----~~~~~~fD~I~~~~~---~~~------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 147 LLIVEGDGRKG-----YPPNAPYNAIHVGAA---APD------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp EEEEESCGGGC-----CGGGCSEEEEEECSC---BSS------CCHHHHHTEEEEEEEEEEE
T ss_pred eEEEECCcccC-----CCcCCCccEEEECCc---hHH------HHHHHHHHhcCCCEEEEEE
Confidence 99999998873 333 78999997653 222 2266789999999998543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=124.89 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+.+|||||||+|.++..+++. +..+|+++|+ +.+++.|++++...++ .++|+++.+|+.+..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-------------~~~v~~~~~d~~~~~- 242 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG-------------SERIHGHGANLLDRD- 242 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT-------------GGGEEEEECCCCSSS-
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc-------------ccceEEEEccccccC-
Confidence 35689999999999999999986 3449999999 9999999999887776 358999999998741
Q ss_pred ccCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEec
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+|++ ++||+|++.. ++++ ......+|.++.++|||||.|++
T Consensus 243 -~~~p-~~~D~v~~~~---vlh~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (363)
T 3dp7_A 243 -VPFP-TGFDAVWMSQ---FLDCFSEEEVISILTRVAQSIGKDSKVYI 285 (363)
T ss_dssp -CCCC-CCCSEEEEES---CSTTSCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred -CCCC-CCcCEEEEec---hhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 1244 7899999655 4443 34456889999999999999974
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9.7e-12 Score=125.87 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhC--CCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN--DFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~--gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++|||||||+|.++..+++. +..+|++||+|+.+++.|++++... ++. ..+++++.+|+.++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~------------~~rv~~~~~D~~~~ 186 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE------------DPRVNLVIGDGVAF 186 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG------------STTEEEEESCHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC------------CCcEEEEECCHHHH
Confidence 46789999999999999999988 4569999999999999999987542 331 25899999999875
Q ss_pred ccccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.. ..+.++||+|++..... ...... ...++..+.++|+|||+|++...
T Consensus 187 l~--~~~~~~fDlIi~d~~~p-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 187 LK--NAAEGSYDAVIVDSSDP-IGPAKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp HH--TSCTTCEEEEEECCCCT-TSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred HH--hccCCCccEEEECCCCc-cCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 21 13457899999865321 111111 36789999999999999997543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=125.38 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+|||+|.+++. ++ |+.+|+|+|+|+.+++.|+++++.|++ .++++++++|+.++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l-------------~~~v~~~~~D~~~~--- 255 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKL-------------EHKIIPILSDVREV--- 255 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTC-------------TTTEEEEESCGGGC---
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEECChHHh---
Confidence 4789999999999999999 87 677999999999999999999999987 25799999999885
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
. .+||+|++++..+. ..++..+.++|+|||.++...+
T Consensus 256 --~--~~fD~Vi~dpP~~~-------~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 256 --D--VKGNRVIMNLPKFA-------HKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp --C--CCEEEEEECCTTTG-------GGGHHHHHHHEEEEEEEEEEEE
T ss_pred --c--CCCcEEEECCcHhH-------HHHHHHHHHHcCCCCEEEEEEe
Confidence 2 78999998753221 2677888899999999885433
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.3e-12 Score=130.75 Aligned_cols=115 Identities=19% Similarity=0.121 Sum_probs=91.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||+|||+|..+..+|+. +..+|+|+|+++.+++.++++++.+|+ .++.++++|+..
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~--------------~nv~v~~~Da~~ 167 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV--------------SNAIVTNHAPAE 167 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC--------------SSEEEECCCHHH
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CceEEEeCCHHH
Confidence 4578899999999999999999986 446999999999999999999999987 479999999988
Q ss_pred cccccCCCCCceeEEEeccc----cccccCh---------------hhHHHHHHHHhccccCCcEEeccCcee
Q 010913 372 LGESMQIQPHSVDVLVSEWM----GYCLLYE---------------SMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~----~~~l~~~---------------~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+. ...+++||+|+++.. +..-.+. .....+|..+.++|||||+|+.++|++
T Consensus 168 l~---~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 168 LV---PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp HH---HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred hh---hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 74 123578999998642 1111111 112378899999999999999888876
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.4e-12 Score=131.26 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=90.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||+|||+|..+..+|+. +..+|+|+|+|+.+++.++++++.+|+ . +.++++|+.+
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~--------------~-v~~~~~Da~~ 162 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA--------------P-LAVTQAPPRA 162 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC--------------C-CEEECSCHHH
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------e-EEEEECCHHH
Confidence 4568899999999999999999976 336999999999999999999999987 4 8999999988
Q ss_pred cccccCCCCCceeEEEeccc----cccccCh---------------hhHHHHHHHHhccccCCcEEeccCcee
Q 010913 372 LGESMQIQPHSVDVLVSEWM----GYCLLYE---------------SMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~----~~~l~~~---------------~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+. ....++||+|+++.. +..-... .....+|..+.++|||||+|+.++|++
T Consensus 163 l~---~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 163 LA---EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp HH---HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred hh---hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 74 123578999996432 1111010 112678999999999999999888876
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-12 Score=121.42 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++. .++.++.+++.++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------------------~~~~~~~~d~~~~-- 142 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------------------PQVTFCVASSHRL-- 142 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------------------TTSEEEECCTTSC--
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-------------------CCcEEEEcchhhC--
Confidence 46789999999999999999997 2349999999999999988763 3678999999876
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.++||+|++... ..++.++.++|||||.+++.
T Consensus 143 --~~~~~~fD~v~~~~~----------~~~l~~~~~~L~pgG~l~~~ 177 (269)
T 1p91_A 143 --PFSDTSMDAIIRIYA----------PCKAEELARVVKPGGWVITA 177 (269)
T ss_dssp --SBCTTCEEEEEEESC----------CCCHHHHHHHEEEEEEEEEE
T ss_pred --CCCCCceeEEEEeCC----------hhhHHHHHHhcCCCcEEEEE
Confidence 467789999997532 12578889999999999854
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.4e-12 Score=126.12 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++.+|||||||+|.++..+++. +..+|++||+|+.+++.|++++.. +++ ..++++++.+|+.+.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~------------~~~~v~~~~~D~~~~ 182 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY------------EDKRVNVFIEDASKF 182 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG------------GSTTEEEEESCHHHH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc------------CCCcEEEEEccHHHH
Confidence 35689999999999999999988 567999999999999999998754 222 125899999998775
Q ss_pred ccccCCCCCceeEEEeccccccccChhhH--HHHHHHHhccccCCcEEeccC
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l--~~vL~~~~r~LkpgG~li~~~ 422 (497)
. +...++||+|+++.... +.....+ ..++..+.++|||||+++...
T Consensus 183 l---~~~~~~fDvIi~d~~~p-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 183 L---ENVTNTYDVIIVDSSDP-IGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp H---HHCCSCEEEEEEECCCS-SSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred H---hhcCCCceEEEECCcCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 2 22357899999864211 1111122 678999999999999999653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-12 Score=128.85 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=76.8
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE-
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV- 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i- 365 (497)
..+.....+.++.+|||||||+|.++..+++. .+|+|||+|+ |+..|++ .... ......++.++
T Consensus 72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~----~~~~--------~~~~~~~v~~~~ 136 (276)
T 2wa2_A 72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHE----KPRL--------VETFGWNLITFK 136 (276)
T ss_dssp HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSC----CCCC--------CCCTTGGGEEEE
T ss_pred HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhh----chhh--------hhhcCCCeEEEe
Confidence 44445545568899999999999999999998 4899999998 5432221 1110 00001278999
Q ss_pred -ecchhhcccccCCCCCceeEEEeccccccccCh-hh-H--HHHHHHHhccccCCc--EEec
Q 010913 366 -QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE-SM-L--SSVLFARDQWLKPGG--AILP 420 (497)
Q Consensus 366 -~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~-~~-l--~~vL~~~~r~LkpgG--~li~ 420 (497)
++|+.++ ++++||+|+|... ...... .+ . ..+|..+.++||||| .+++
T Consensus 137 ~~~D~~~l------~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 137 SKVDVTKM------EPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp CSCCGGGC------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred ccCcHhhC------CCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 9999875 3678999999854 222221 11 1 137888999999999 8774
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=121.32 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++++|||||||+|.++..+++. +..+|++||+++.+++.|++++...+- ....++++++.+|+.+..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~----------~~~~~~v~~~~~D~~~~l- 145 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC----------GYEDKRVNVFIEDASKFL- 145 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG----------GGGSTTEEEEESCHHHHH-
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcc----------ccCCCcEEEEECChHHHH-
Confidence 46789999999999999999988 457999999999999999998754320 011268999999998752
Q ss_pred ccCCCCCceeEEEeccccccccChhhH--HHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l--~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+...++||+|++..... ......+ ..++..+.++|+|||+++....
T Consensus 146 --~~~~~~fD~Ii~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 146 --ENVTNTYDVIIVDSSDP-IGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp --HHCCSCEEEEEEECCCT-TTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred --HhCCCCceEEEEcCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 22367899999864221 1112222 6899999999999999996644
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-12 Score=124.39 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++|||||||+|.++..++++ +..+|++||+++.+++.|++++.. +++. .++++++.+|+.+.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~------------~~rv~v~~~Da~~~ 161 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS------------SSKLTLHVGDGFEF 161 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG------------CTTEEEEESCHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC------------CCcEEEEECcHHHH
Confidence 46789999999999999999988 457999999999999999998754 2321 25899999999875
Q ss_pred ccccCCCCCceeEEEeccccccccCh-hhHHHHHHHHhccccCCcEEeccC
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYE-SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~-~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
. +...++||+|++.......... -....++..+.++|+|||+++...
T Consensus 162 l---~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 162 M---KQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp H---HTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred H---hhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 2 2346789999986432111000 012468899999999999999654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.24 E-value=7e-12 Score=114.32 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. . .+++++++|+.+.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~--------------~~~~~~~~d~~~~--- 73 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------H--------------RGGNLVRADLLCS--- 73 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------C--------------SSSCEEECSTTTT---
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------c--------------cCCeEEECChhhh---
Confidence 467799999999999999999988 99999999999975 1 3688999999873
Q ss_pred cCCCCCceeEEEecccccccc------ChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLL------YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~------~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.++||+|++++..+... .......++..+.+.| |||.+++
T Consensus 74 --~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~ 121 (170)
T 3q87_B 74 --INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYL 121 (170)
T ss_dssp --BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEE
T ss_pred --cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEE
Confidence 4568999999975322110 1112345777777778 9999984
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-12 Score=125.77 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhC--CCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN--DFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~--gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++|||||||+|.++..+++. +..+|++||+++.+++.|++++... ++ ..++++++.+|+.+.
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~------------~~~rv~~~~~D~~~~ 174 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF------------SHPKLDLFCGDGFEF 174 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG------------GCTTEEEECSCHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc------------CCCCEEEEEChHHHH
Confidence 35689999999999999999988 4569999999999999999987543 22 136899999999875
Q ss_pred ccccCCCCCceeEEEeccccccccChhhH--HHHHHHHhccccCCcEEeccC
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l--~~vL~~~~r~LkpgG~li~~~ 422 (497)
. +...++||+|++..... +.....+ ..++..+.++|+|||+++...
T Consensus 175 l---~~~~~~fD~Ii~d~~~~-~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 175 L---KNHKNEFDVIITDSSDP-VGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp H---HHCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred H---HhcCCCceEEEEcCCCC-CCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 2 22467899999865321 1111122 678999999999999999654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-13 Score=129.29 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=75.8
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE-
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV- 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i- 365 (497)
..+.....+.++.+|||||||+|.++..+++. .+|+|||+++ |+..+++ .... ......++.++
T Consensus 64 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~----~~~~--------~~~~~~~v~~~~ 128 (265)
T 2oxt_A 64 AWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHE----VPRI--------TESYGWNIVKFK 128 (265)
T ss_dssp HHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCC----CCCC--------CCBTTGGGEEEE
T ss_pred HHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhh----hhhh--------hhccCCCeEEEe
Confidence 33444444567899999999999999999988 4899999998 5322211 1110 00001268999
Q ss_pred -ecchhhcccccCCCCCceeEEEeccccccccCh-hh-H--HHHHHHHhccccCCc--EEec
Q 010913 366 -QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE-SM-L--SSVLFARDQWLKPGG--AILP 420 (497)
Q Consensus 366 -~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~-~~-l--~~vL~~~~r~LkpgG--~li~ 420 (497)
++|+.++ ++++||+|+|... ...... .+ . ..+|..+.++||||| .+++
T Consensus 129 ~~~D~~~l------~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 129 SRVDIHTL------PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp CSCCTTTS------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred cccCHhHC------CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 8999875 3678999999854 222221 11 1 137888999999999 8774
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=123.78 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=82.0
Q ss_pred CEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
.+|||||||+|.++..+++. +..+|++||+++.+++.|++++.... ..+++++.+|+.++.. .
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~--------------~~rv~v~~~Da~~~l~--~ 154 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR--------------APRVKIRVDDARMVAE--S 154 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC--------------TTTEEEEESCHHHHHH--T
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC--------------CCceEEEECcHHHHHh--h
Confidence 49999999999999999994 44499999999999999999864332 2689999999987631 2
Q ss_pred CCCCceeEEEeccccccccChh-hHHHHHHHHhccccCCcEEeccC
Q 010913 378 IQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~-~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.++||+|++........... ....++..+.++|+|||+++...
T Consensus 155 ~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 155 FTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp CCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 3467899999864322111111 12678999999999999998543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=121.39 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=72.7
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.|.....+.++.+|||||||+|.++..+++.|. +|+|||+|+.+++.|++++..+++ .++++
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~v~ 80 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-------------ASKLQ 80 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-------------GGGEE
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CCceE
Confidence 4555666666777899999999999999999999976 999999999999999999876654 24799
Q ss_pred EEecchhhcccccCCCCCceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
++.+|+.++. ++ +||+|+++.
T Consensus 81 ~~~~D~~~~~----~~--~fD~vv~nl 101 (285)
T 1zq9_A 81 VLVGDVLKTD----LP--FFDTCVANL 101 (285)
T ss_dssp EEESCTTTSC----CC--CCSEEEEEC
T ss_pred EEEcceeccc----ch--hhcEEEEec
Confidence 9999998763 33 799999874
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=123.90 Aligned_cols=99 Identities=12% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh-cc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE-LG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~-l~ 373 (497)
.++.+|||+| |+|.+++.+++.|. .+|+|+|+|+.+++.|+++++.+|+ .+++++.+|+.+ +
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~--------------~~v~~~~~D~~~~l- 234 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY--------------EDIEIFTFDLRKPL- 234 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC--------------CCEEEECCCTTSCC-
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CCEEEEEChhhhhc-
Confidence 4689999999 99999999999875 7999999999999999999998887 489999999987 4
Q ss_pred cccCC-CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 374 ESMQI-QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 374 ~~l~~-~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+. ..++||+|+++++. . ......++..+.++|||||.
T Consensus 235 ---~~~~~~~fD~Vi~~~p~-~---~~~~~~~l~~~~~~LkpgG~ 272 (373)
T 2qm3_A 235 ---PDYALHKFDTFITDPPE-T---LEAIRAFVGRGIATLKGPRC 272 (373)
T ss_dssp ---CTTTSSCBSEEEECCCS-S---HHHHHHHHHHHHHTBCSTTC
T ss_pred ---hhhccCCccEEEECCCC-c---hHHHHHHHHHHHHHcccCCe
Confidence 22 24689999987531 1 11357899999999999994
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=122.98 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh--CC-CCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD--ND-FWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~--~g-l~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++++|||||||+|.++..+++. +..+|++||+++.+++.|++++.. .+ +. .++++++.+|+.+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~------------~~~v~~~~~D~~~ 143 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD------------DPRAVLVIDDARA 143 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG------------CTTEEEEESCHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccccc------------CCceEEEEchHHH
Confidence 35689999999999999999988 566999999999999999998754 22 11 2589999999987
Q ss_pred cccccCCCCCceeEEEecccccc-c-cChhh--HHHHHHHHhccccCCcEEeccCc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYC-L-LYESM--LSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~-l-~~~~~--l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.. +...++||+|++...... . ..... ...++..+.++|||||+++....
T Consensus 144 ~l---~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 144 YL---ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp HH---HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HH---HhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 52 234678999998653221 0 00111 36789999999999999996543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=122.43 Aligned_cols=111 Identities=17% Similarity=0.071 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++.+|||||||+|.++..+++. +..+|++||+++.+++.|++++.. .++. ..+++++.+|+..+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~------------~~~v~~~~~D~~~~ 161 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLA------------DPRATVRVGDGLAF 161 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG------------CTTEEEEESCHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccC------------CCcEEEEECcHHHH
Confidence 46789999999999999999988 456999999999999999987632 1111 25899999999886
Q ss_pred ccccCCCCCceeEEEeccccccccChhhH--HHHHHHHhccccCCcEEecc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l--~~vL~~~~r~LkpgG~li~~ 421 (497)
.. ..+.++||+|++....... ....+ ..++..+.++|||||++++.
T Consensus 162 ~~--~~~~~~fDvIi~d~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 162 VR--QTPDNTYDVVIIDTTDPAG-PASKLFGEAFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp HH--SSCTTCEEEEEEECC----------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred HH--hccCCceeEEEECCCCccc-cchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 31 1146789999986532211 11112 57899999999999999854
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=121.95 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=87.7
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.++......++.+|||||||+|.++..+++.+ ..+++++|+ +.+++.|++++..+++ .++++++.
T Consensus 174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-------------~~~v~~~~ 239 (360)
T 1tw3_A 174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-------------SDRVDVVE 239 (360)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-------------TTTEEEEE
T ss_pred HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC-------------CCceEEEe
Confidence 34444556778999999999999999999883 358999999 8999999999988877 35899999
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEecc
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~ 421 (497)
+|+.+. ++. .||+|++.. ++++..+ ...++.++.++|||||.+++.
T Consensus 240 ~d~~~~-----~~~-~~D~v~~~~---vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 287 (360)
T 1tw3_A 240 GDFFEP-----LPR-KADAIILSF---VLLNWPDHDAVRILTRCAEALEPGGRILIH 287 (360)
T ss_dssp CCTTSC-----CSS-CEEEEEEES---CGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCC-----CCC-CccEEEEcc---cccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 998752 333 499999654 4433333 358999999999999998844
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=125.24 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||+|||+|..+..+++. +. .+|+|+|+++.+++.++++++.+|+ .++.++.+|+..
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~--------------~~v~~~~~D~~~ 321 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI--------------KIVKPLVKDARK 321 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC--------------CSEEEECSCTTC
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CcEEEEEcChhh
Confidence 4578899999999999999999986 32 6999999999999999999999887 579999999987
Q ss_pred cccccCCCCCceeEEEeccc--ccc-ccChhh----------------HHHHHHHHhccccCCcEEeccCceeE
Q 010913 372 LGESMQIQPHSVDVLVSEWM--GYC-LLYESM----------------LSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~--~~~-l~~~~~----------------l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
+.. .++.++||+|++... +.. +...++ ...+|..+.++|||||.|+..+|++.
T Consensus 322 ~~~--~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 322 APE--IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp CSS--SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred cch--hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 631 134478999997431 111 111111 15789999999999999998877663
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=128.10 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+|.+|||+|||+|..+..+|+. + ..+|+|+|+|+.+++.++++++.+|+ .++.++++|+..+.
T Consensus 116 ~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~--------------~nv~~~~~D~~~~~ 181 (479)
T 2frx_A 116 NAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI--------------SNVALTHFDGRVFG 181 (479)
T ss_dssp CCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC--------------CSEEEECCCSTTHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEeCCHHHhh
Confidence 38899999999999999999986 3 46999999999999999999998887 57999999998764
Q ss_pred cccCCCCCceeEEEeccc----cccccCh---------------hhHHHHHHHHhccccCCcEEeccCcee
Q 010913 374 ESMQIQPHSVDVLVSEWM----GYCLLYE---------------SMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~----~~~l~~~---------------~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
....++||+|+++.. +..-... .....+|..+.++|||||+|+.++|++
T Consensus 182 ---~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 182 ---AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp ---HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ---hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 113578999998532 1111111 113468899999999999999888876
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-11 Score=115.90 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=68.0
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE-e
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV-Q 366 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i-~ 366 (497)
.+.......++.+|||||||||.++..+++.|+.+|+|||+|+.|++.|+++.. ++... .
T Consensus 28 ~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~-------------------~~~~~~~ 88 (232)
T 3opn_A 28 ALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE-------------------RVVVMEQ 88 (232)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT-------------------TEEEECS
T ss_pred HHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc-------------------ccccccc
Confidence 333333335678999999999999999999987799999999999998766421 22211 1
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++..+.. ..++...+|.+.+... +.. +..+|.++.++|||||.+++
T Consensus 89 ~~~~~~~~-~~~~~~~~d~~~~D~v---~~~---l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 89 FNFRNAVL-ADFEQGRPSFTSIDVS---FIS---LDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp CCGGGCCG-GGCCSCCCSEEEECCS---SSC---GGGTHHHHHHHSCTTCEEEE
T ss_pred ceEEEeCH-hHcCcCCCCEEEEEEE---hhh---HHHHHHHHHHhccCCCEEEE
Confidence 12221110 0011112344443221 111 16689999999999999985
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=121.76 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=86.4
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..++......+ .+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...++ .++++++
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-------------~~~v~~~ 222 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA-------------GERVSLV 222 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH-------------TTSEEEE
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC-------------CCcEEEe
Confidence 34444444455 89999999999999999987 3459999999 9999999998776655 2589999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+|+.+. ++ ++||+|++.. ++++. .....++..+.++|+|||.+++.
T Consensus 223 ~~d~~~~-----~~-~~~D~v~~~~---vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 223 GGDMLQE-----VP-SNGDIYLLSR---IIGDLDEAASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp ESCTTTC-----CC-SSCSEEEEES---CGGGCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cCCCCCC-----CC-CCCCEEEEch---hccCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9998762 33 6799999655 44433 34458999999999999998854
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-11 Score=122.12 Aligned_cols=115 Identities=20% Similarity=0.171 Sum_probs=87.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
....++... ..++.+|||+|||+|.+++.++..+. .+|+|+|+|+.+++.|++++..+|+. ++++
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~-------------~~i~ 271 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL-------------DKIK 271 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG-------------GGCE
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC-------------CceE
Confidence 444444444 57889999999999999999999865 48999999999999999999999873 5899
Q ss_pred EEecchhhcccccCCCCCceeEEEecccccc-ccC---hhh-HHHHHHHHhccccCCcEE
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYC-LLY---ESM-LSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~-l~~---~~~-l~~vL~~~~r~LkpgG~l 418 (497)
++++|+.++. .+.++||+|++++.... +.. ... ...++..+.++| +|+.+
T Consensus 272 ~~~~D~~~~~----~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~ 326 (373)
T 3tm4_A 272 FIQGDATQLS----QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGV 326 (373)
T ss_dssp EEECCGGGGG----GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEE
T ss_pred EEECChhhCC----cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEE
Confidence 9999999874 56689999999863211 111 112 267788888988 43333
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.6e-11 Score=122.79 Aligned_cols=117 Identities=19% Similarity=0.149 Sum_probs=88.3
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
++.+.+.++......++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|+++++.+++ .+
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~--------------~~ 335 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGL--------------QN 335 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTC--------------CS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------Cc
Confidence 344555555555566788999999999999999999854 999999999999999999999987 58
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++++|+.+....++++.++||+|++++.-..+ ..++..+. .++|++++++
T Consensus 336 v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~-~~~p~~ivyv 387 (433)
T 1uwv_A 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA------AGVMQQII-KLEPIRIVYV 387 (433)
T ss_dssp EEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC------HHHHHHHH-HHCCSEEEEE
T ss_pred eEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH------HHHHHHHH-hcCCCeEEEE
Confidence 9999999987432223455789999988632211 23444443 3789988874
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.9e-12 Score=119.66 Aligned_cols=101 Identities=9% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-----G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
++.+|||||||+|..+..+++. +..+|+|||+|+.+++.|+. + ..+|+++++|+.+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~-------------~~~v~~~~gD~~~ 141 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------D-------------MENITLHQGDCSD 141 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------G-------------CTTEEEEECCSSC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------c-------------CCceEEEECcchh
Confidence 5689999999999999999986 23599999999999887761 1 1579999999987
Q ss_pred cccccCC-CCCceeEEEeccccccccChhhHHHHHHHHhc-cccCCcEEeccCc
Q 010913 372 LGESMQI-QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQ-WLKPGGAILPDTA 423 (497)
Q Consensus 372 l~~~l~~-~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r-~LkpgG~li~~~~ 423 (497)
... ++. ...+||+|++... + .....+|.++.+ +|||||+|++...
T Consensus 142 ~~~-l~~~~~~~fD~I~~d~~-----~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 142 LTT-FEHLREMAHPLIFIDNA-----H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SGG-GGGGSSSCSSEEEEESS-----C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred HHH-HHhhccCCCCEEEECCc-----h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 410 112 2347999997542 2 256778999997 9999999996543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=107.79 Aligned_cols=102 Identities=21% Similarity=0.299 Sum_probs=75.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.++.+|||+|||+|.++..+++. |. .+|+|+|+++ ++.. .+++++.+|+.+
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------------------~~~~~~~~d~~~ 73 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------------------VGVDFLQGDFRD 73 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------------------TTEEEEESCTTS
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------------------CcEEEEEccccc
Confidence 3567889999999999999999988 54 6999999999 6531 368999999877
Q ss_pred ccc--ccC--CCCCceeEEEeccccccccCh--hh------HHHHHHHHhccccCCcEEec
Q 010913 372 LGE--SMQ--IQPHSVDVLVSEWMGYCLLYE--SM------LSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 372 l~~--~l~--~~~~~fDvIvs~~~~~~l~~~--~~------l~~vL~~~~r~LkpgG~li~ 420 (497)
... .++ ++.++||+|++....+..... .. ...++..+.++|+|||.+++
T Consensus 74 ~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (180)
T 1ej0_A 74 ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred chhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 520 000 456789999986533222111 11 16789999999999999983
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=120.82 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||+|||+|.+++.+|+.+. +|+|+|+|+.+++.|++++..+++ . ++++.+|+.++.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl--------------~-v~~~~~d~~~~~- 350 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNV--------------D-AEFEVASDREVS- 350 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC--------------C-EEEEECCTTTCC-
T ss_pred cCCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC--------------c-EEEEECChHHcC-
Confidence 46788999999999999999999865 999999999999999999998887 4 999999998862
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ .+||+|++++.-.. ....++..+. .|+|||+++++
T Consensus 351 ----~-~~fD~Vv~dPPr~g-----~~~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 351 ----V-KGFDTVIVDPPRAG-----LHPRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp ----C-TTCSEEEECCCTTC-----SCHHHHHHHH-HHCCSEEEEEE
T ss_pred ----c-cCCCEEEEcCCccc-----hHHHHHHHHH-hcCCCcEEEEE
Confidence 2 28999998763211 1123555544 49999999865
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.5e-11 Score=123.47 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=90.3
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
...+|.+|||+|||+|..+..+++.+ ..+|+|+|+++.+++.+++++..+|+ ++.++.+|+..+
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~---------------~~~~~~~D~~~~ 307 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---------------KATVKQGDGRYP 307 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---------------CCEEEECCTTCT
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC---------------CeEEEeCchhhc
Confidence 45788999999999999999999884 36999999999999999999998886 478999998776
Q ss_pred ccccCCCCCceeEEEeccc--cc-cccChhh----------------HHHHHHHHhccccCCcEEeccCceeE
Q 010913 373 GESMQIQPHSVDVLVSEWM--GY-CLLYESM----------------LSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~--~~-~l~~~~~----------------l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
.. .++.++||+|+++.. +. .+.+.++ ...+|..+.++|||||.++.++|++.
T Consensus 308 ~~--~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 308 SQ--WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp HH--HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred hh--hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 31 134578999997532 11 1111111 14789999999999999998887663
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=108.42 Aligned_cols=101 Identities=18% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-C--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-G--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.. .. .++.++++|+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~--------------~~v~~~~~d~~~ 74 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI--------------PNVYFIQGEIGK 74 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC--------------TTCEEEECCTTT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC--------------CCceEEEccccc
Confidence 467889999999999999999987 4 3599999999821 11 468899999876
Q ss_pred cccc-------------------c--CCCCCceeEEEeccccccccC-hhh-------HHHHHHHHhccccCCcEEec
Q 010913 372 LGES-------------------M--QIQPHSVDVLVSEWMGYCLLY-ESM-------LSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 372 l~~~-------------------l--~~~~~~fDvIvs~~~~~~l~~-~~~-------l~~vL~~~~r~LkpgG~li~ 420 (497)
.... + .++..+||+|++....+.... ..+ ...++..+.++|||||.+++
T Consensus 75 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 75 DNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp TSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 5200 0 035678999998753222100 111 13478889999999999984
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-11 Score=120.74 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCC------CCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 296 MKGAVVMDIGCG------TGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 296 ~~~~~VLDvGCG------tG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.++.+||||||| +|..++.+++. +..+|+|||+|+.|. .. ..+|+++++
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~---------------~~rI~fv~G 271 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD---------------ELRIRTIQG 271 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC---------------BTTEEEEEC
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc---------------CCCcEEEEe
Confidence 467899999999 77777777664 445999999999872 11 258999999
Q ss_pred chhhcccccCCC------CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 368 MVEELGESMQIQ------PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 368 d~~~l~~~l~~~------~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
|+.++. +. .++||+|++... ++..+...+|.++.++|||||++++.
T Consensus 272 Da~dlp----f~~~l~~~d~sFDlVisdgs----H~~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 272 DQNDAE----FLDRIARRYGPFDIVIDDGS----HINAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp CTTCHH----HHHHHHHHHCCEEEEEECSC----CCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccccc----hhhhhhcccCCccEEEECCc----ccchhHHHHHHHHHHhcCCCeEEEEE
Confidence 998863 44 578999998642 34567888999999999999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=107.18 Aligned_cols=91 Identities=18% Similarity=0.112 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|++++. +++++++|+.++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-------------------~~~~~~~d~~~~-- 107 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------------------GVNFMVADVSEI-- 107 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------------------TSEEEECCGGGC--
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-------------------CCEEEECcHHHC--
Confidence 45788999999999999999999887789999999999999998742 579999999875
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL 412 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~L 412 (497)
+ ++||+|+++++.+.+.. .....++..+.+.|
T Consensus 108 ----~-~~~D~v~~~~p~~~~~~-~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 108 ----S-GKYDTWIMNPPFGSVVK-HSDRAFIDKAFETS 139 (200)
T ss_dssp ----C-CCEEEEEECCCC--------CHHHHHHHHHHE
T ss_pred ----C-CCeeEEEECCCchhccC-chhHHHHHHHHHhc
Confidence 2 68999999864333322 22346788888887
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=7e-11 Score=109.96 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.++.+|||+|||+|.++..+++.+. +|+|||+++. ..+ .+++++++|+.+...
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~-----------~~~--------------~~v~~~~~D~~~~~~ 76 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEM-----------EEI--------------AGVRFIRCDIFKETI 76 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCC-----------CCC--------------TTCEEEECCTTSSSH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC-cEEEEecccc-----------ccC--------------CCeEEEEccccCHHH
Confidence 46789999999999999999999854 9999999973 111 478999999877420
Q ss_pred cc---C-CC---CCceeEEEeccccccccC--------hhhHHHHHHHHhccccCCcEEe
Q 010913 375 SM---Q-IQ---PHSVDVLVSEWMGYCLLY--------ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l---~-~~---~~~fDvIvs~~~~~~l~~--------~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. . +. .++||+|+|+........ ......++..+.++|||||.++
T Consensus 77 ~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 77 FDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp HHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 00 0 11 148999999753221111 1223567888899999999998
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=109.82 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.+++.+. +..+|+|+|+++.+++.+++++..+|. +..+..+|....
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~---------------~~~~~v~D~~~~--- 163 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW---------------DFTFALQDVLCA--- 163 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC---------------EEEEEECCTTTS---
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC---------------CceEEEeecccC---
Confidence 568899999999999999888 666999999999999999999988875 788999998765
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+++++|+|++.-+.++|.+... ...+ ++...|+++|+++
T Consensus 164 --~~~~~~DvvLllk~lh~LE~q~~-~~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 164 --PPAEAGDLALIFKLLPLLEREQA-GSAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp --CCCCBCSEEEEESCHHHHHHHST-THHH-HHHHHCBCSEEEE
T ss_pred --CCCCCcchHHHHHHHHHhhhhch-hhHH-HHHHHhcCCCEEE
Confidence 35679999997655555544322 2333 7777999999887
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=107.83 Aligned_cols=101 Identities=23% Similarity=0.270 Sum_probs=72.2
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CC---------CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GA---------SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~---------~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+.++.+|||+|||+|.++..+++. |. .+|+|+|+|+.. .+ .++.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~--------------~~~~~ 74 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL--------------EGATF 74 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC--------------TTCEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC--------------CCCeE
Confidence 467899999999999999999988 64 699999999821 12 36788
Q ss_pred E-ecchhhcccc----cCCCCCceeEEEeccccccccC-hhhH-------HHHHHHHhccccCCcEEec
Q 010913 365 V-QGMVEELGES----MQIQPHSVDVLVSEWMGYCLLY-ESML-------SSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 365 i-~gd~~~l~~~----l~~~~~~fDvIvs~~~~~~l~~-~~~l-------~~vL~~~~r~LkpgG~li~ 420 (497)
+ .+|+...... ..++..+||+|+|.....+..+ ..+. ..++..+.++|||||.+++
T Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (196)
T 2nyu_A 75 LCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLC 143 (196)
T ss_dssp ECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 8 8887654200 0133468999998653222212 1222 4789999999999999984
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.8e-11 Score=114.54 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=76.6
Q ss_pred CCEEEEEcCCC--CHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 298 GAVVMDIGCGT--GILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 298 ~~~VLDvGCGt--G~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
...|||||||+ |..+..+++. +..+|++||.|+.|++.|++++...+ ..+++++++|+.++.
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--------------~~~~~~v~aD~~~~~ 144 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--------------EGRTAYVEADMLDPA 144 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--------------SSEEEEEECCTTCHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--------------CCcEEEEEecccChh
Confidence 36899999997 3344444432 44599999999999999999875432 147999999998753
Q ss_pred cccCCC--CCcee-----EEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 374 ESMQIQ--PHSVD-----VLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 374 ~~l~~~--~~~fD-----vIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
..+..+ ...|| +|+++.+.+++.....+..++..+.+.|+|||+|+++.
T Consensus 145 ~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 145 SILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp HHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred hhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 100000 12343 46665544444433347889999999999999999654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=115.55 Aligned_cols=112 Identities=18% Similarity=0.280 Sum_probs=79.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+.+.+.....+.++.+|||||||+|.++..+++.+. +|+|||+++.+++.|++++..+++ +++++
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~--------------~~v~~ 94 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGY--------------NNLEV 94 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTC--------------CCEEC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--------------CceEE
Confidence 344455555667889999999999999999999865 999999999999999999887775 57999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHH---------------HHHhccccCCcEEe
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL---------------FARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL---------------~~~~r~LkpgG~li 419 (497)
+.+|+..+. ..+||+|+++.. |... ...+..++ ..+.|+++|+|...
T Consensus 95 ~~~D~~~~~------~~~~D~Vv~n~p-y~~~-~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~~~ 156 (299)
T 2h1r_A 95 YEGDAIKTV------FPKFDVCTANIP-YKIS-SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGDSN 156 (299)
T ss_dssp ----CCSSC------CCCCSEEEEECC-GGGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTSTT
T ss_pred EECchhhCC------cccCCEEEEcCC-cccc-cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCCcc
Confidence 999998753 348999998753 2221 12223333 33567888877543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=112.72 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.+...++... .++.+|||||||+|.+++.++.. +..+|+|+|+++.+++.+++++..+|+ +.
T Consensus 121 ~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~---------------~~ 183 (281)
T 3lcv_B 121 EFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV---------------PH 183 (281)
T ss_dssp HHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC---------------CE
T ss_pred HHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC---------------Cc
Confidence 3444454444 45789999999999999999887 677999999999999999999999987 57
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+...|...- .+++++|+|++.-+..+|.... ....+ .+...|+|+|+++
T Consensus 184 ~~~v~D~~~~-----~p~~~~DvaL~lkti~~Le~q~-kg~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 184 RTNVADLLED-----RLDEPADVTLLLKTLPCLETQQ-RGSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp EEEECCTTTS-----CCCSCCSEEEETTCHHHHHHHS-TTHHH-HHHHHSSCSEEEE
T ss_pred eEEEeeeccc-----CCCCCcchHHHHHHHHHhhhhh-hHHHH-HHHHHhCCCCEEE
Confidence 8888887653 4688999999776444442221 12333 8889999999988
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-11 Score=118.61 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..+++|||||||+|.++..+++.+ .+|++||+++.+++.|++++.. +++. .++++++.+|+..+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~------------~~rv~~~~~D~~~~- 136 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKN------------NKNFTHAKQLLDLD- 136 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHT------------CTTEEEESSGGGSC-
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccC------------CCeEEEEechHHHH-
Confidence 356899999999999999998887 7999999999999999876432 1111 25899999999875
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
. ++||+|++.. .++..++..+.+.|||||+++..
T Consensus 137 ----~--~~fD~Ii~d~--------~dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 137 ----I--KKYDLIFCLQ--------EPDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ----C--CCEEEEEESS--------CCCHHHHHHHHTTEEEEEEEEEE
T ss_pred ----H--hhCCEEEECC--------CChHHHHHHHHHhcCCCcEEEEE
Confidence 2 7899999763 12234889999999999999854
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-10 Score=117.74 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC---------------------------------------CEE
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA---------------------------------------SRV 323 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~---------------------------------------~~V 323 (497)
+.+...|+......++.+|||+|||+|.+++.+|..+. .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 45677788888888899999999999999999988743 369
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccc-cccChhhHH
Q 010913 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGY-CLLYESMLS 402 (497)
Q Consensus 324 ~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~-~l~~~~~l~ 402 (497)
+|+|+++.+++.|++++..+|+. ++|++.++|+.++. .+.+||+|++++... -+.....+.
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~-------------~~i~~~~~D~~~l~-----~~~~~D~Iv~NPPyg~rl~~~~~l~ 322 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVD-------------EYIEFNVGDATQFK-----SEDEFGFIITNPPYGERLEDKDSVK 322 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCG-------------GGEEEEECCGGGCC-----CSCBSCEEEECCCCCCSHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHcCCC-------------CceEEEECChhhcC-----cCCCCcEEEECCCCcCccCCHHHHH
Confidence 99999999999999999999872 47999999999873 356899999997421 122234566
Q ss_pred HHHHHHhccccC--CcEEe
Q 010913 403 SVLFARDQWLKP--GGAIL 419 (497)
Q Consensus 403 ~vL~~~~r~Lkp--gG~li 419 (497)
.+...+.+.||+ ||.++
T Consensus 323 ~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 323 QLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp HHHHHHHHHHHTSBSCEEE
T ss_pred HHHHHHHHHHhhCCCCEEE
Confidence 677777777776 77765
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.5e-11 Score=119.50 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=79.4
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.++....+.++.+|||||||+|.++..+++. +..+++++|+++ ++. +++++..++ .++|+++.
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~~~~~~~~~-------------~~~v~~~~ 238 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--RHRLDAPDV-------------AGRWKVVE 238 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--TCCCCCGGG-------------TTSEEEEE
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--cccccccCC-------------CCCeEEEe
Confidence 4555556677899999999999999999987 344899999954 443 222222222 35899999
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhH--HHHHHHHhccccCCcEEecc
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l--~~vL~~~~r~LkpgG~li~~ 421 (497)
+|+.+ +++ +||+|++.. ++++..+. ..+|.++.++|||||.|++.
T Consensus 239 ~d~~~-----~~p--~~D~v~~~~---vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~ 285 (348)
T 3lst_A 239 GDFLR-----EVP--HADVHVLKR---ILHNWGDEDSVRILTNCRRVMPAHGRVLVI 285 (348)
T ss_dssp CCTTT-----CCC--CCSEEEEES---CGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred cCCCC-----CCC--CCcEEEEeh---hccCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99973 244 899999654 55544444 68999999999999999853
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-10 Score=116.40 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=92.2
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC---------------------------------------CEE
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA---------------------------------------SRV 323 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~---------------------------------------~~V 323 (497)
+.+...++......++..|||+|||+|.+++.+|..+. .+|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 45667777777778899999999999999999987643 259
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccc-cccChhhHH
Q 010913 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGY-CLLYESMLS 402 (497)
Q Consensus 324 ~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~-~l~~~~~l~ 402 (497)
+|+|+++.+++.|++++..+|+. ++|+++++|+.++. .+.+||+|+++++.. -+.....+.
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~-------------~~I~~~~~D~~~~~-----~~~~fD~Iv~NPPYg~rl~~~~~l~ 328 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLG-------------DLITFRQLQVADFQ-----TEDEYGVVVANPPYGERLEDEEAVR 328 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCT-------------TCSEEEECCGGGCC-----CCCCSCEEEECCCCCCSHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHcCCC-------------CceEEEECChHhCC-----CCCCCCEEEECCCCccccCCchhHH
Confidence 99999999999999999999983 47999999999873 346899999996421 122224455
Q ss_pred HHHHHHhccccC--CcEEec
Q 010913 403 SVLFARDQWLKP--GGAILP 420 (497)
Q Consensus 403 ~vL~~~~r~Lkp--gG~li~ 420 (497)
.+...+.+.||+ ||.+++
T Consensus 329 ~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 329 QLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp HHHHHHHHHHHTCTTCEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 566666666665 877663
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.5e-10 Score=114.02 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC---------------------------------------CEE
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA---------------------------------------SRV 323 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~---------------------------------------~~V 323 (497)
+.+...|+......++..|||.+||+|.+++.+|..+. .+|
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 45667777777778899999999999999999987643 259
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc-cccccChhhHH
Q 010913 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLYESMLS 402 (497)
Q Consensus 324 ~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~-~~~l~~~~~l~ 402 (497)
+|+|+++.+++.|++++..+|+. +.++++++|+.++. .+.+||+|++++. +.-+.....+.
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~-------------~~I~~~~~D~~~l~-----~~~~fD~Iv~NPPYG~rl~~~~~l~ 321 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLE-------------DVVKLKQMRLQDFK-----TNKINGVLISNPPYGERLLDDKAVD 321 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCT-------------TTEEEEECCGGGCC-----CCCCSCEEEECCCCTTTTSCHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHcCCC-------------CceEEEECChHHCC-----ccCCcCEEEECCchhhccCCHHHHH
Confidence 99999999999999999999983 57999999999873 2458999999964 22233345666
Q ss_pred HHHHHHhccccC--CcEEec
Q 010913 403 SVLFARDQWLKP--GGAILP 420 (497)
Q Consensus 403 ~vL~~~~r~Lkp--gG~li~ 420 (497)
.+...+.+.||+ ||.+++
T Consensus 322 ~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 322 ILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp HHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHhhCCCcEEEE
Confidence 777777777766 887663
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-10 Score=116.39 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=82.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+...++..... .+.+|||+|||+|.+++.+|+. +.+|+|||+|+.+++.|+++++.||+ ++++
T Consensus 201 ~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~--------------~~v~ 264 (369)
T 3bt7_A 201 QMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI--------------DNVQ 264 (369)
T ss_dssp HHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC--------------CSEE
T ss_pred HHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--------------CceE
Confidence 344444444433 3678999999999999999885 55999999999999999999999987 5899
Q ss_pred EEecchhhcccccCCC------------CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 364 VVQGMVEELGESMQIQ------------PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~------------~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
++.+|+.++...+.-. ..+||+|+..+.-.. +...+.+.|+|+|.++..+|+
T Consensus 265 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g---------~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 265 IIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG---------LDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp EECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC---------CCHHHHHHHTTSSEEEEEESC
T ss_pred EEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc---------cHHHHHHHHhCCCEEEEEECC
Confidence 9999998763111100 137999998763221 122344556688888855554
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.6e-10 Score=106.59 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=69.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|.....+.++.+|||||||+|.++..+++.|. +|+|||+|+.+++.|++++... ++++
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~----------------~~v~ 79 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH----------------DNFQ 79 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC----------------CSEE
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhccC----------------CCeE
Confidence 4666777777778899999999999999999999985 9999999999999999886431 4799
Q ss_pred EEecchhhcccccCCCC-CceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQP-HSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~-~~fDvIvs~~ 390 (497)
++++|+.++. ++. ..| .|+++.
T Consensus 80 ~~~~D~~~~~----~~~~~~~-~vv~nl 102 (244)
T 1qam_A 80 VLNKDILQFK----FPKNQSY-KIFGNI 102 (244)
T ss_dssp EECCCGGGCC----CCSSCCC-EEEEEC
T ss_pred EEEChHHhCC----cccCCCe-EEEEeC
Confidence 9999999874 443 456 466653
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=117.46 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc-eEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK-MEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~-i~~i~gd~~~l 372 (497)
.+|.+|||++||+|.+++.+|+. |+.+|+++|+++.+++.++++++.||+. ++ ++++.+|+.++
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~-------------~~~v~v~~~Da~~~ 117 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP-------------EDRYEIHGMEANFF 117 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC-------------GGGEEEECSCHHHH
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------CceEEEEeCCHHHH
Confidence 46789999999999999999985 6679999999999999999999999982 34 99999999886
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
... ....+||+|+..+ +. .+..++..+.+.|+|||+|+..
T Consensus 118 l~~--~~~~~fD~V~lDP--~g-----~~~~~l~~a~~~Lk~gGll~~t 157 (392)
T 3axs_A 118 LRK--EWGFGFDYVDLDP--FG-----TPVPFIESVALSMKRGGILSLT 157 (392)
T ss_dssp HHS--CCSSCEEEEEECC--SS-----CCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHH--hhCCCCcEEEECC--Cc-----CHHHHHHHHHHHhCCCCEEEEE
Confidence 310 1245799999876 21 1245788888899999987743
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.8e-10 Score=116.70 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=79.7
Q ss_pred HHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPS-LMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..++.... +.++.+|||||||+|.++..+++.+ ..+++++|+ +.+++.|++. .++++
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------------------~~v~~ 256 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL--------------------SGIEH 256 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------------------TTEEE
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc--------------------CCCEE
Confidence 34444443 5677999999999999999999883 358999999 8888765431 36999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHH--HHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS--SVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~--~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.+ . ++. ||+|++.. ++++..+.. .+|.++.++|||||.+++.
T Consensus 257 ~~~d~~~-~----~~~--~D~v~~~~---~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 257 VGGDMFA-S----VPQ--GDAMILKA---VCHNWSDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp EECCTTT-C----CCC--EEEEEEES---SGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeCCccc-C----CCC--CCEEEEec---ccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999876 2 333 99999654 555555555 8999999999999999854
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.3e-10 Score=114.98 Aligned_cols=100 Identities=16% Similarity=0.035 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhC---------------CCCCCCCCCCCCCCCCC
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN---------------DFWWDRPQSEGNINNAG 360 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~---------------gl~~~~~~~~~~~~~~~ 360 (497)
++.+|||+|||+|.+++.+++. |+.+|+++|+++.+++.|+++++.| ++ .
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl--------------~ 112 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE--------------K 112 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS--------------S
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC--------------C
Confidence 6889999999999999999998 7678999999999999999999988 65 3
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+++++++|+..+.. ....+||+|+..+.+ ....++..+.+.|||||+++.
T Consensus 113 ~i~v~~~Da~~~~~---~~~~~fD~I~lDP~~-------~~~~~l~~a~~~lk~gG~l~v 162 (378)
T 2dul_A 113 TIVINHDDANRLMA---ERHRYFHFIDLDPFG-------SPMEFLDTALRSAKRRGILGV 162 (378)
T ss_dssp EEEEEESCHHHHHH---HSTTCEEEEEECCSS-------CCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEcCcHHHHHH---hccCCCCEEEeCCCC-------CHHHHHHHHHHhcCCCCEEEE
Confidence 49999999987631 124579999976532 124678888899999998774
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-10 Score=113.78 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=79.5
Q ss_pred HHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...++.... ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.|++. .+|+
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~~v~ 249 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------------------SGVE 249 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------------------TTEE
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------------------CCCE
Confidence 344555554 567799999999999999999987 4458999999 8787655421 4799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.+. ++.. |+|++.. ++++ ......+|++++++|||||.|++.
T Consensus 250 ~~~~d~~~~-----~p~~--D~v~~~~---vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~ 299 (368)
T 3reo_A 250 HLGGDMFDG-----VPKG--DAIFIKW---ICHDWSDEHCLKLLKNCYAALPDHGKVIVA 299 (368)
T ss_dssp EEECCTTTC-----CCCC--SEEEEES---CGGGBCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEecCCCCC-----CCCC--CEEEEec---hhhcCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 999998762 4443 9999654 4443 344568999999999999998843
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=111.35 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=86.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
....++......+..+|||||||+|.++..++++ +..+++..|. +.+++.|++++...+ .++|+
T Consensus 167 ~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~--------------~~rv~ 231 (353)
T 4a6d_A 167 NGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE--------------EEQID 231 (353)
T ss_dssp HHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC----------------CCSEE
T ss_pred HHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc--------------cCcee
Confidence 3445666666677889999999999999999988 4458999997 778999988865444 26999
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+|+.+. +...+|+|++.. +|++.++ ...+|+++++.|+|||.|++
T Consensus 232 ~~~gD~~~~------~~~~~D~~~~~~---vlh~~~d~~~~~iL~~~~~al~pgg~lli 281 (353)
T 4a6d_A 232 FQEGDFFKD------PLPEADLYILAR---VLHDWADGKCSHLLERIYHTCKPGGGILV 281 (353)
T ss_dssp EEESCTTTS------CCCCCSEEEEES---SGGGSCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred eecCccccC------CCCCceEEEeee---ecccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 999998753 234579999544 5554443 46789999999999999884
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-09 Score=107.37 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=86.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.+|.+|||+|||+|..+..+|+. +..+|+|+|+++.+++.++++++.+|+ .+++++.+|+.+
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~--------------~~v~~~~~D~~~ 164 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV--------------SCCELAEEDFLA 164 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC--------------CSEEEEECCGGG
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEEeCChHh
Confidence 4578899999999999999999986 446999999999999999999999987 579999999988
Q ss_pred cccccCCCCCceeEEEeccc----cccccC----------hhh-------HHHHHHHHhccccCCcEEeccCceeE
Q 010913 372 LGESMQIQPHSVDVLVSEWM----GYCLLY----------ESM-------LSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~----~~~l~~----------~~~-------l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
+....+ ...+||+|++... +..-.+ ... ...+|..+.++|+ ||+|+.++|++.
T Consensus 165 ~~~~~~-~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 165 VSPSDP-RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp SCTTCG-GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred cCcccc-ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 641000 0157999997531 211110 011 1346777888887 999998888763
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-10 Score=106.90 Aligned_cols=85 Identities=26% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..++ .+|+|+|+|+. . +.++.+++.++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~------------~-----------------~~~~~~d~~~~--- 109 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL------------D-----------------PRVTVCDMAQV--- 109 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS------------S-----------------TTEEESCTTSC---
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC------------C-----------------ceEEEeccccC---
Confidence 567899999999999988773 48999999985 1 35678888875
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.++||+|++.. +++ ..++..++..+.++|+|||.+++.
T Consensus 110 -~~~~~~fD~v~~~~---~l~-~~~~~~~l~~~~~~L~~gG~l~i~ 150 (215)
T 2zfu_A 110 -PLEDESVDVAVFCL---SLM-GTNIRDFLEEANRVLKPGGLLKVA 150 (215)
T ss_dssp -SCCTTCEEEEEEES---CCC-SSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCCCEeEEEEeh---hcc-ccCHHHHHHHHHHhCCCCeEEEEE
Confidence 46788999999754 443 367889999999999999999854
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=108.95 Aligned_cols=86 Identities=21% Similarity=0.383 Sum_probs=73.2
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|+....+.++.+|||||||+|.++..+++.+. +|+|||+++.+++.|++++... ++++
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~----------------~~v~ 99 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELY----------------NNIE 99 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHC----------------SSEE
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccC----------------CCeE
Confidence 4556677777778899999999999999999999865 9999999999999999988632 5899
Q ss_pred EEecchhhcccccCCCCCceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
++++|+.+++ ++..+||+|+++.
T Consensus 100 vi~gD~l~~~----~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 100 IIWGDALKVD----LNKLDFNKVVANL 122 (295)
T ss_dssp EEESCTTTSC----GGGSCCSEEEEEC
T ss_pred EEECchhhCC----cccCCccEEEEeC
Confidence 9999999874 5566799999874
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.7e-10 Score=112.83 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=78.3
Q ss_pred HHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.++.... ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.|++. ++|+++
T Consensus 191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~~v~~~ 249 (364)
T 3p9c_A 191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF--------------------PGVTHV 249 (364)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------------------TTEEEE
T ss_pred HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc--------------------CCeEEE
Confidence 3444333 567799999999999999999987 4458999999 7777655421 479999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+|+.+ . ++.+ |+|++.. ++++. .....+|++++++|||||.|++.
T Consensus 250 ~~D~~~-~----~p~~--D~v~~~~---vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 250 GGDMFK-E----VPSG--DTILMKW---ILHDWSDQHCATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp ECCTTT-C----CCCC--SEEEEES---CGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred eCCcCC-C----CCCC--CEEEehH---HhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 999976 2 4443 9999654 55433 45678999999999999998843
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-10 Score=104.65 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+.+|.+|||||||+ +++|+|+.|++.|+++.. .+++++++|+.++
T Consensus 8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~------------------~~~~~~~~d~~~~ 54 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG------------------NEGRVSVENIKQL 54 (176)
T ss_dssp TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT------------------TTSEEEEEEGGGG
T ss_pred cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc------------------cCcEEEEechhcC
Confidence 4567899999999996 239999999999998742 2479999999987
Q ss_pred ccccCCCCCceeEEEeccccccccCh-hhHHHHHHHHhccccCCcEEec
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYE-SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~-~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.. .++++++||+|++.. ++++. .++..++.++.|+|||||.+++
T Consensus 55 ~~-~~~~~~~fD~V~~~~---~l~~~~~~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 55 LQ-SAHKESSFDIILSGL---VPGSTTLHSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp GG-GCCCSSCEEEEEECC---STTCCCCCCHHHHHHHHHHEEEEEEEEE
T ss_pred cc-ccCCCCCEeEEEECC---hhhhcccCHHHHHHHHHHHCCCCEEEEE
Confidence 40 012688999999765 45554 6678999999999999999997
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.8e-10 Score=113.20 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCC------CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGA------SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~------~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
.++.+|||+|||+|.++..+++... .+|+|+|+++.+++.|+.++...|+ ++.++++|.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~---------------~~~i~~~D~ 193 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---------------KMTLLHQDG 193 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---------------CCEEEESCT
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC---------------CceEEECCC
Confidence 4678999999999999999887731 4899999999999999999887765 578999998
Q ss_pred hhcccccCCCCCceeEEEeccccccccChh--------------hH-HHHHHHHhccccCCcEEeccC
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYES--------------ML-SSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~--------------~l-~~vL~~~~r~LkpgG~li~~~ 422 (497)
... .+..+||+|+++++...+.... +. ..++..+.++|+|||++++..
T Consensus 194 l~~-----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 194 LAN-----LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp TSC-----CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCc-----cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 663 3467899999987521221110 11 257888999999999988544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-11 Score=116.03 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=81.9
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.+.|.....+.++.+|||+|||+|.++..+++.| .+|+|+|+|+.+++.|++++. + .++++++
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~--------------~~~v~~~ 80 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--L--------------NTRVTLI 80 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--T--------------CSEEEEC
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--c--------------CCceEEE
Confidence 3445555566788999999999999999999998 499999999999988776653 1 2589999
Q ss_pred ecchhhcccccCCC-CCceeEEEeccccccccChhhHHHH----------H----HHHhccccCCcEEeccC
Q 010913 366 QGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSV----------L----FARDQWLKPGGAILPDT 422 (497)
Q Consensus 366 ~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l~~~~~l~~v----------L----~~~~r~LkpgG~li~~~ 422 (497)
++|+.++. ++ .++| .|++++. |... ...+..+ + ..+.|+|+|||.+.+..
T Consensus 81 ~~D~~~~~----~~~~~~f-~vv~n~P-y~~~-~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 81 HQDILQFQ----FPNKQRY-KIVGNIP-YHLS-TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CSCCTTTT----CCCSSEE-EEEEECC-SSSC-HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred ECChhhcC----cccCCCc-EEEEeCC-cccc-HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 99998874 44 3678 6777642 2211 1222222 2 55889999999987443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8e-10 Score=112.39 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.++.+|||||||+|.++..+++. +..+|+++|+ +.+++.|++. .+++++.+|+.+ .
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~~v~~~~~d~~~-~ 243 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS--------------------NNLTYVGGDMFT-S 243 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB--------------------TTEEEEECCTTT-C
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC--------------------CCcEEEeccccC-C
Confidence 456789999999999999999987 3448999999 8888766531 359999999865 2
Q ss_pred cccCCCCCceeEEEeccccccccChhhHH--HHHHHHhccccC---CcEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLS--SVLFARDQWLKP---GGAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~--~vL~~~~r~Lkp---gG~li~~ 421 (497)
++ .||+|++.. ++++..+.. .+|.++.++||| ||.+++.
T Consensus 244 ----~p--~~D~v~~~~---~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 244 ----IP--NADAVLLKY---ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp ----CC--CCSEEEEES---CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred ----CC--CccEEEeeh---hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 33 399999654 555545555 899999999999 9998854
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=112.66 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=78.5
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.| .++.
T Consensus 28 ~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------------------~~~~ 84 (421)
T 2ih2_A 28 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------------------PWAE 84 (421)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------------------TTEE
T ss_pred HHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------------------CCCc
Confidence 334444444456779999999999999999986 345999999999888655 1689
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccC---------hhh-----------------HHHHHHHHhccccCCcE
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY---------ESM-----------------LSSVLFARDQWLKPGGA 417 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~---------~~~-----------------l~~vL~~~~r~LkpgG~ 417 (497)
++++|+.... +.++||+|++++....... ... ...++..+.++|+|||.
T Consensus 85 ~~~~D~~~~~-----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~ 159 (421)
T 2ih2_A 85 GILADFLLWE-----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV 159 (421)
T ss_dssp EEESCGGGCC-----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred EEeCChhhcC-----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCE
Confidence 9999998762 3578999999864322211 111 12568889999999999
Q ss_pred Eecc
Q 010913 418 ILPD 421 (497)
Q Consensus 418 li~~ 421 (497)
+++.
T Consensus 160 ~~~i 163 (421)
T 2ih2_A 160 LVFV 163 (421)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8743
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-09 Score=102.87 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=69.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|.....+.++.+|||||||+|.++..+++.+. +|+|||+++.+++.+++++... ++++
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~~----------------~~v~ 78 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQQ----------------KNIT 78 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTTC----------------TTEE
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhhC----------------CCcE
Confidence 3445566666677899999999999999999999975 9999999999999999987541 4899
Q ss_pred EEecchhhcccccCCCCCceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
++++|+.+++..--...++|| |+++.
T Consensus 79 ~i~~D~~~~~~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 79 IYQNDALQFDFSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp EEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred EEEcchHhCCHHHhccCCCeE-EEecC
Confidence 999999987411001135688 66664
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=114.07 Aligned_cols=119 Identities=20% Similarity=0.079 Sum_probs=86.5
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--------------CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--------------GASRVIAVEASEKMAAVATQIAKDNDFWWDRP 350 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--------------G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~ 350 (497)
..+.|.......++.+|||+|||+|.++..+++. ...+++|+|+++.++..|+.++...|+..
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~--- 235 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT--- 235 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS---
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc---
Confidence 3444544445567889999999999999888864 12479999999999999999988877621
Q ss_pred CCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChh--------------hHHHHHHHHhccccCCc
Q 010913 351 QSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYES--------------MLSSVLFARDQWLKPGG 416 (497)
Q Consensus 351 ~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~--------------~l~~vL~~~~r~LkpgG 416 (497)
.++.++++|..... ...+||+|+++++........ ....++..+.++|||||
T Consensus 236 ---------~~~~i~~gD~l~~~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG 301 (445)
T 2okc_A 236 ---------DRSPIVCEDSLEKE-----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGG 301 (445)
T ss_dssp ---------SCCSEEECCTTTSC-----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred ---------CCCCEeeCCCCCCc-----ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCC
Confidence 15778999987653 234899999986432211110 11367888999999999
Q ss_pred EEec
Q 010913 417 AILP 420 (497)
Q Consensus 417 ~li~ 420 (497)
++++
T Consensus 302 ~~a~ 305 (445)
T 2okc_A 302 RAAV 305 (445)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9863
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-09 Score=103.54 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=68.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|.....+.++ +|||||||+|.++..+++.|. +|+|||+++.+++.+++++.. .+++
T Consensus 34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~-----------------~~v~ 94 (271)
T 3fut_A 34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG-----------------LPVR 94 (271)
T ss_dssp HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT-----------------SSEE
T ss_pred HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC-----------------CCEE
Confidence 344556666667788 999999999999999999985 899999999999999987631 4799
Q ss_pred EEecchhhcccccCCCC-CceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQP-HSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~-~~fDvIvs~~ 390 (497)
++++|+..++ ++. ..+|+|+++.
T Consensus 95 vi~~D~l~~~----~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 95 LVFQDALLYP----WEEVPQGSLLVANL 118 (271)
T ss_dssp EEESCGGGSC----GGGSCTTEEEEEEE
T ss_pred EEECChhhCC----hhhccCccEEEecC
Confidence 9999998874 332 2689999885
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-09 Score=106.89 Aligned_cols=83 Identities=19% Similarity=0.104 Sum_probs=67.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCH-------HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASE-------KMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~-------~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
...++.+|||+|||+|.+++.+|+.|. +|+|+|+|+ .+++.|++++..+++. +++++++
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-------------~ri~~~~ 145 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTA-------------ARINLHF 145 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-------------TTEEEEE
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-------------cCeEEEE
Confidence 345678999999999999999999976 899999999 9999999888777652 3699999
Q ss_pred cchhhcccccCCCC--CceeEEEecccc
Q 010913 367 GMVEELGESMQIQP--HSVDVLVSEWMG 392 (497)
Q Consensus 367 gd~~~l~~~l~~~~--~~fDvIvs~~~~ 392 (497)
+|+.++.. .++. .+||+|++++|.
T Consensus 146 ~d~~~~l~--~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 146 GNAAEQMP--ALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp SCHHHHHH--HHHHHHCCCSEEEECCCC
T ss_pred CCHHHHHH--hhhccCCCccEEEECCCC
Confidence 99988521 1223 689999998753
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.9e-09 Score=102.63 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCCCCCCEEEEEcCCC------CHhHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 292 NPSLMKGAVVMDIGCGT------GILSLFAAQ-AG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt------G~ls~~la~-~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.++.+|||+|||+ |. ..+++ .| ..+|+|+|+|+. + .+++
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v--------------~~v~ 108 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V--------------SDAD 108 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B--------------CSSS
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C--------------CCCE
Confidence 45667899999999954 66 33444 35 359999999986 1 2567
Q ss_pred E-EecchhhcccccCCCCCceeEEEecccccc-----cc---ChhhHHHHHHHHhccccCCcEEec
Q 010913 364 V-VQGMVEELGESMQIQPHSVDVLVSEWMGYC-----LL---YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~-i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~-----l~---~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+ +++|+.++. + .++||+|+|+..... +. .......++..+.++|||||.+++
T Consensus 109 ~~i~gD~~~~~----~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~ 169 (290)
T 2xyq_A 109 STLIGDCATVH----T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 169 (290)
T ss_dssp EEEESCGGGCC----C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECccccCC----c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 8 999998863 3 378999999742111 00 123346789999999999999985
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=111.79 Aligned_cols=123 Identities=17% Similarity=0.113 Sum_probs=90.5
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC------------------------------------------
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA------------------------------------------ 320 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~------------------------------------------ 320 (497)
+.+...++......++.+|||.+||+|.+++.+|..+.
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 45666777777777889999999999999998887531
Q ss_pred -CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc-cccccCh
Q 010913 321 -SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLYE 398 (497)
Q Consensus 321 -~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~-~~~l~~~ 398 (497)
.+|+|+|+++.+++.|+.++..+|+. +.|++.++|+.++.. +...++||+||+++. +.-+...
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~-------------~~i~~~~~D~~~~~~--~~~~~~~d~Iv~NPPYG~Rlg~~ 320 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIG-------------ELITFEVKDVAQLTN--PLPKGPYGTVLSNPPYGERLDSE 320 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCG-------------GGEEEEECCGGGCCC--SCTTCCCCEEEECCCCCC---CC
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCC-------------CceEEEECChhhCcc--ccccCCCCEEEeCCCccccccch
Confidence 37999999999999999999999983 469999999988741 222348999999964 2222223
Q ss_pred hhHHHHHHHH---hccccCCcEEec
Q 010913 399 SMLSSVLFAR---DQWLKPGGAILP 420 (497)
Q Consensus 399 ~~l~~vL~~~---~r~LkpgG~li~ 420 (497)
..+..+...+ .+.+.|||.+++
T Consensus 321 ~~l~~ly~~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 321 PALIALHSLLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 3444444444 445568999874
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.7e-09 Score=106.94 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.|++ + .+++++.+|+.+ .
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--------------~~v~~~~~d~~~-~- 248 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N--------------ENLNFVGGDMFK-S- 248 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C--------------SSEEEEECCTTT-C-
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C--------------CCcEEEeCccCC-C-
Confidence 45689999999999999999988 3348999999 677765442 1 359999999876 2
Q ss_pred ccCCCCCceeEEEeccccccccChhhHH--HHHHHHhccccC---CcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLS--SVLFARDQWLKP---GGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~--~vL~~~~r~Lkp---gG~li~~ 421 (497)
++ +||+|++.. ++++..+.. .+|.++.++|+| ||.+++.
T Consensus 249 ---~~--~~D~v~~~~---vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 249 ---IP--SADAVLLKW---VLHDWNDEQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp ---CC--CCSEEEEES---CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred ---CC--CceEEEEcc---cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 33 499999654 555545544 999999999999 9998853
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.3e-09 Score=107.01 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC--CCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN--DFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~--gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+|.+|||+|||+|..++.+++.|. +|+|||+|+.+++.|+++++.+ |+ ++++++++|+.++..
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl--------------~~i~~i~~Da~~~L~ 157 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG--------------KDVNILTGDFKEYLP 157 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT--------------CEEEEEESCGGGSHH
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC--------------CcEEEEECcHHHhhh
Confidence 489999999999999999998876 9999999999999999999887 76 589999999987521
Q ss_pred ccCCCCCceeEEEeccc
Q 010913 375 SMQIQPHSVDVLVSEWM 391 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~ 391 (497)
..+..+||+|+++++
T Consensus 158 --~~~~~~fDvV~lDPP 172 (410)
T 3ll7_A 158 --LIKTFHPDYIYVDPA 172 (410)
T ss_dssp --HHHHHCCSEEEECCE
T ss_pred --hccCCCceEEEECCC
Confidence 012357999999863
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-08 Score=100.78 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=66.9
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
..+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++..+| .+++++++|+
T Consensus 20 ~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---------------~~v~~v~~d~ 84 (301)
T 1m6y_A 20 EFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---------------DRVSLFKVSY 84 (301)
T ss_dssp HHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---------------TTEEEEECCG
T ss_pred HhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEECCH
Confidence 3334568899999999999999999988 34599999999999999999987654 3799999999
Q ss_pred hhcccccC-CCCCceeEEEecc
Q 010913 370 EELGESMQ-IQPHSVDVLVSEW 390 (497)
Q Consensus 370 ~~l~~~l~-~~~~~fDvIvs~~ 390 (497)
.++...++ ....+||+|++..
T Consensus 85 ~~l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 85 READFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp GGHHHHHHHTTCSCEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCCEEEEcC
Confidence 88641111 1125799999754
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=96.57 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|.....+.++.+|||||||+|.++..+++.|+.+|+|||+++.+++.++++ . ..+++
T Consensus 18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~---------------~~~v~ 79 (249)
T 3ftd_A 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---G---------------DERLE 79 (249)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---C---------------CTTEE
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---c---------------CCCeE
Confidence 45566667677778999999999999999999999766999999999999988765 1 14799
Q ss_pred EEecchhhcccccCCCC--CceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQP--HSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~--~~fDvIvs~~ 390 (497)
++++|+..++ ++. ..+ +|+++.
T Consensus 80 ~i~~D~~~~~----~~~~~~~~-~vv~Nl 103 (249)
T 3ftd_A 80 VINEDASKFP----FCSLGKEL-KVVGNL 103 (249)
T ss_dssp EECSCTTTCC----GGGSCSSE-EEEEEC
T ss_pred EEEcchhhCC----hhHccCCc-EEEEEC
Confidence 9999998874 322 234 677664
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.2e-08 Score=106.36 Aligned_cols=122 Identities=13% Similarity=-0.038 Sum_probs=84.6
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----C---------------CCEEEEEeCCHHHHHHHHHHHHhCCCC
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----G---------------ASRVIAVEASEKMAAVATQIAKDNDFW 346 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G---------------~~~V~gvD~S~~~i~~A~~~~~~~gl~ 346 (497)
.+.|.......++.+|||.|||+|.+++.+++. + ...++|+|+++.++..|+.++...|+.
T Consensus 158 v~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 158 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 334444444567889999999999998888764 1 137999999999999999998877762
Q ss_pred CCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccC-----------hhhHHHHHHHHhccccCC
Q 010913 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-----------ESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-----------~~~l~~vL~~~~r~Lkpg 415 (497)
.. ....+.++++|..... +....+||+|+++++...... ...-..++..+.++||||
T Consensus 238 ~~---------~~~~~~I~~gDtL~~~---~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 305 (541)
T 2ar0_A 238 GN---------LDHGGAIRLGNTLGSD---GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 305 (541)
T ss_dssp CB---------GGGTBSEEESCTTSHH---HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred cc---------ccccCCeEeCCCcccc---cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence 00 0012678899876542 123568999999974322111 111236788899999999
Q ss_pred cEEe
Q 010913 416 GAIL 419 (497)
Q Consensus 416 G~li 419 (497)
|+++
T Consensus 306 Gr~a 309 (541)
T 2ar0_A 306 GRAA 309 (541)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 9876
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-08 Score=95.97 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-||.|.|..+..+++. +..+|+.||+++.+++.|++.+.. .+. ...++++++.+|+..+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~-----------~~dpRv~v~~~Dg~~~ 150 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGS-----------YDDPRFKLVIDDGVNF 150 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTG-----------GGCTTEEEEESCTTTT
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccc-----------cCCCcEEEEechHHHH
Confidence 45689999999999999999998 667999999999999999988643 121 1247899999999887
Q ss_pred ccccCCCCCceeEEEeccccccccChh-hHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~-~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
- .-..++||+|+.......-.... .-..++..+++.|+|||+++....
T Consensus 151 l---~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 151 V---NQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp T---SCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred H---hhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 3 34567999999764211100000 114688899999999999995433
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.9e-08 Score=95.06 Aligned_cols=70 Identities=21% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCE----EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASR----VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~----V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
+.+.|.....+.++.+|||||||+|.++..+++.+. + |+|||+++.|++.|+++. . .
T Consensus 30 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~---~---------------~ 90 (279)
T 3uzu_A 30 VIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF---G---------------E 90 (279)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH---G---------------G
T ss_pred HHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc---C---------------C
Confidence 444555555677899999999999999999999865 4 999999999999999883 1 4
Q ss_pred ceEEEecchhhcc
Q 010913 361 KMEVVQGMVEELG 373 (497)
Q Consensus 361 ~i~~i~gd~~~l~ 373 (497)
+++++++|+.+++
T Consensus 91 ~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 91 LLELHAGDALTFD 103 (279)
T ss_dssp GEEEEESCGGGCC
T ss_pred CcEEEECChhcCC
Confidence 7999999999874
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=86.51 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCC--CCCCCCCCCCCCCCCceEEEecchhhc--
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF--WWDRPQSEGNINNAGKMEVVQGMVEEL-- 372 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl--~~~~~~~~~~~~~~~~i~~i~gd~~~l-- 372 (497)
+.++||++|| |..++.+|+...++|++||.++..++.|+++++.+|+ . ++|+++.|++.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-------------~~I~~~~gda~~~~~ 94 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG-------------TEVNIVWTDIGPTGD 94 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT-------------CEEEEEECCCSSBCG
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-------------CceEEEEeCchhhhc
Confidence 5679999998 5788888886335999999999999999999999886 3 5899999996542
Q ss_pred -------------cc---cc-CC-CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 373 -------------GE---SM-QI-QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 -------------~~---~l-~~-~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.. .+ .. ..++||+|+...- .....+..+.+.|+|||+|+++.
T Consensus 95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~--------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR--------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS--------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC--------CchhHHHHHHHhcCCCeEEEEeC
Confidence 00 00 01 2368999996541 11244555668999999998554
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-08 Score=97.14 Aligned_cols=96 Identities=16% Similarity=0.036 Sum_probs=66.8
Q ss_pred HHHhCCCCCCC--CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMKG--AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~~--~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.+.....+.++ .+|||+|||+|..++.+|+.|+ +|++||+++.++..++++++...-. ...++....+++++
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~-----~~~~~~l~~~i~~~ 150 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYAD-----AEIGGWLQERLQLI 150 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHC-----TTTHHHHHHHEEEE
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhh-----HhhhhhhhcCEEEE
Confidence 34444455566 8999999999999999999988 7999999999877777665432100 00000001479999
Q ss_pred ecchhhcccccCCCCCceeEEEecccc
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMG 392 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~ 392 (497)
++|+.++. +....+||+|+..+|.
T Consensus 151 ~~D~~~~L---~~~~~~fDvV~lDP~y 174 (258)
T 2oyr_A 151 HASSLTAL---TDITPRPQVVYLDPMF 174 (258)
T ss_dssp ESCHHHHS---TTCSSCCSEEEECCCC
T ss_pred ECCHHHHH---HhCcccCCEEEEcCCC
Confidence 99998863 2223479999998754
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-08 Score=96.21 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=62.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCE--EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASR--VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~--V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
+.+.|.....+.++.+|||||||+|.++. +++ +. + |+|||+++.|++.+++++... +++
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~----------------~~v 69 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG----------------PKL 69 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG----------------GGE
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC----------------Cce
Confidence 44455555566788999999999999999 765 43 6 999999999999888765321 479
Q ss_pred EEEecchhhcccccCCCC-----CceeEEEecc
Q 010913 363 EVVQGMVEELGESMQIQP-----HSVDVLVSEW 390 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~-----~~fDvIvs~~ 390 (497)
+++++|+..++ ++. +..++|+++.
T Consensus 70 ~~i~~D~~~~~----~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 70 TIYQQDAMTFN----FGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp EEECSCGGGCC----HHHHHHHHTSCEEEEEEC
T ss_pred EEEECchhhCC----HHHhhcccCCceEEEECC
Confidence 99999998864 211 2357888875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=102.28 Aligned_cols=118 Identities=14% Similarity=-0.050 Sum_probs=81.3
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--------C--------CCEEEEEeCCHHHHHHHHHHHHhCCCCCC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--------G--------ASRVIAVEASEKMAAVATQIAKDNDFWWD 348 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--------G--------~~~V~gvD~S~~~i~~A~~~~~~~gl~~~ 348 (497)
..+.|.......++ +|||.+||||.+.+.+++. + ...++|+|+++.++..|+.++...|+.
T Consensus 233 Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-- 309 (544)
T 3khk_A 233 IVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID-- 309 (544)
T ss_dssp HHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC--
Confidence 33444443333444 9999999999988877542 0 238999999999999999999888872
Q ss_pred CCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEecccccc-------------------------ccChhh-HH
Q 010913 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYC-------------------------LLYESM-LS 402 (497)
Q Consensus 349 ~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~-------------------------l~~~~~-l~ 402 (497)
.++.++++|..... .++..+||+|+++++... +..... --
T Consensus 310 -----------~~i~i~~gDtL~~~---~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~ 375 (544)
T 3khk_A 310 -----------FNFGKKNADSFLDD---QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF 375 (544)
T ss_dssp -----------CBCCSSSCCTTTSC---SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH
T ss_pred -----------cccceeccchhcCc---ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH
Confidence 34555778765542 245678999999974321 111111 12
Q ss_pred HHHHHHhccccCCcEEe
Q 010913 403 SVLFARDQWLKPGGAIL 419 (497)
Q Consensus 403 ~vL~~~~r~LkpgG~li 419 (497)
.++..+.+.|+|||++.
T Consensus 376 ~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 376 AWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp HHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHhccCceEE
Confidence 57888999999999965
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=94.34 Aligned_cols=112 Identities=14% Similarity=-0.012 Sum_probs=82.5
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~----G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..++.+|||.+||+|.+.+.+++. +...++|+|+++.++..|+.++...|+.. +++.++++|..
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~------------~~~~I~~gDtL 286 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI------------ENQFLHNADTL 286 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG------------GGEEEEESCTT
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc------------CccceEeccee
Confidence 357889999999999998888776 34589999999999999999988887621 36889999987
Q ss_pred hcccccCCCCCceeEEEecccccccc-------------------Chhh-HHHHHHHHhcccc-CCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLL-------------------YESM-LSSVLFARDQWLK-PGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~-------------------~~~~-l~~vL~~~~r~Lk-pgG~li 419 (497)
..+.. ..+..+||+|+++++...-. .... --.++..+.+.|+ |||++.
T Consensus 287 ~~d~p-~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 287 DEDWP-TQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp TSCSC-CSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred ccccc-ccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence 54200 13467899999997422100 0001 1247888999999 999975
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-07 Score=92.37 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=72.9
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
|.....+.++.+|||+|||+|.++..+++. |+..|+|+|++-.+...+. .+ . ....++..+.+
T Consensus 66 i~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi-----~~----------~-~~g~~ii~~~~ 129 (277)
T 3evf_A 66 FHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPM-----NV----------Q-SLGWNIITFKD 129 (277)
T ss_dssp HHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCC-----CC----------C-BTTGGGEEEEC
T ss_pred HHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccc-----cc----------C-cCCCCeEEEec
Confidence 333345678889999999999999998876 7778999999843210000 00 0 00114455666
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhh---HHHHHHHHhccccCC-cEEeccCce
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESM---LSSVLFARDQWLKPG-GAILPDTAT 424 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~---l~~vL~~~~r~Lkpg-G~li~~~~~ 424 (497)
++... .++..+||+|+|..+...-.+..+ ...+|..+.++|+|| |.+++....
T Consensus 130 ~~dv~----~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 130 KTDIH----RLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp SCCTT----TSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cceeh----hcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 55333 366789999999853331111111 123467889999999 999954433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.4e-07 Score=90.18 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=88.0
Q ss_pred HHHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
..|.+.+...+. ..++++||-||.|.|..+..+.+.+..+|+.||+++.+++.|++.+.... ....+....++
T Consensus 190 ~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~------~~~~d~pr~~r 263 (381)
T 3c6k_A 190 LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTC------GDVLDNLKGDC 263 (381)
T ss_dssp HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----------CCSSSEETT
T ss_pred HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhh------hhhhccccccc
Confidence 346566554332 23568999999999999999999877899999999999999998753210 00112222357
Q ss_pred eEEEecchhhcccccCCCCCceeEEEecccccc----cc--Ch-hhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYC----LL--YE-SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~----l~--~~-~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++.+|+..+-....-..++||+|+....... .. .. ---..++..+.+.|+|||+++.
T Consensus 264 v~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 264 YQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp EEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred eeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999987653111112468999997632110 00 01 1125678889999999999983
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8e-07 Score=90.37 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=91.2
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
...+|.+|||+.||.|.=+..++..+. ..|+|+|+++.-+...+++++..+... .....++.+...|...+
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~--------~~~~~~v~v~~~D~~~~ 216 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEE--------IRDGNQVRVTSWDGRKW 216 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTT--------TTTSSSEEEECCCGGGH
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhh--------hccCCceEEEeCchhhc
Confidence 457899999999999999999988844 479999999999999999988766521 00124788999998876
Q ss_pred ccccCCCCCceeEEEeccc--c--ccccC----------h-------hhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 373 GESMQIQPHSVDVLVSEWM--G--YCLLY----------E-------SMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~--~--~~l~~----------~-------~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
. ....++||.|+.... + ..... . .....+|....++|||||+|+-+||++.
T Consensus 217 ~---~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 217 G---ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp H---HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred c---hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 4 245678999997532 1 11110 0 1124678888999999999999999874
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=95.06 Aligned_cols=115 Identities=13% Similarity=0.015 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-C---CCEEEEEeCCHHHHHHH--HHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-G---ASRVIAVEASEKMAAVA--TQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G---~~~V~gvD~S~~~i~~A--~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
..++.+|||.|||+|.+++.+++. + ..+++|+|+++.++..| +.++..+++.+ ......+..++
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Llh----------Gi~~~~I~~dD 388 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVS----------SNNAPTITGED 388 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCB----------TTBCCEEECCC
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhc----------CCCcceEEecc
Confidence 356889999999999999999886 3 24799999999999999 54444433311 00123555666
Q ss_pred hhhcccccCCCCCceeEEEeccccccccC-hh-------------------------hHHHHHHHHhccccCCcEEeccC
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLY-ES-------------------------MLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-~~-------------------------~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.... +....+||+||++++...... .. ....++..+.++|+|||++.+-.
T Consensus 389 ~L~~~---~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 389 VCSLN---PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp GGGCC---GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhccc---ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 65532 134578999999974311011 00 12346778889999999987433
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-07 Score=89.59 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=69.8
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
|.....+.++.+|||||||+|.++..+++. |+..|+|+|++..+...+... ... ..++.....
T Consensus 82 i~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~---------------g~~ii~~~~ 145 (282)
T 3gcz_A 82 MEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL---------------GWNLIRFKD 145 (282)
T ss_dssp HHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT---------------TGGGEEEEC
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC---------------CCceEEeeC
Confidence 334445678899999999999999998865 888899999986532111100 000 123333333
Q ss_pred chhhcccccCCCCCceeEEEeccccccccCh---hhHHHHHHHHhccccCC--cEEecc
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYE---SMLSSVLFARDQWLKPG--GAILPD 421 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~---~~l~~vL~~~~r~Lkpg--G~li~~ 421 (497)
++... .++..++|+|+|......-... .....+|.-+.++|+|| |.++.-
T Consensus 146 ~~dv~----~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 146 KTDVF----NMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp SCCGG----GSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred Ccchh----hcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 32222 2567899999998533211101 11123577778999999 999843
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=84.17 Aligned_cols=119 Identities=21% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-------CC------CEEEEEeCCH---HHHH-----------HHHHHHHhCCCCCC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-------GA------SRVIAVEASE---KMAA-----------VATQIAKDNDFWWD 348 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-------G~------~~V~gvD~S~---~~i~-----------~A~~~~~~~gl~~~ 348 (497)
.++.+|||||+|+|..++.+++. +. .+++++|..+ ..+. .|++.+......
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~-- 136 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMP-- 136 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCS--
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccc--
Confidence 35679999999999987775542 21 3899999876 4433 555555431000
Q ss_pred CCCCC--CCCCCCCceEEEecchhhcccccCCCC---CceeEEEeccccccccChhh-HHHHHHHHhccccCCcEEe
Q 010913 349 RPQSE--GNINNAGKMEVVQGMVEELGESMQIQP---HSVDVLVSEWMGYCLLYESM-LSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 349 ~~~~~--~~~~~~~~i~~i~gd~~~l~~~l~~~~---~~fDvIvs~~~~~~l~~~~~-l~~vL~~~~r~LkpgG~li 419 (497)
..... .......+++++.||+.+.-.. .+. ..||+|+...+.-.- ++.+ -..+|..+.++|+|||+|+
T Consensus 137 ~~g~~r~~~~~~~~~l~l~~GDa~~~l~~--~~~~~~~~~D~iflD~fsp~~-~p~lw~~~~l~~l~~~L~pGG~l~ 210 (257)
T 2qy6_A 137 LPGCHRLLLDEGRVTLDLWFGDINELISQ--LDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLA 210 (257)
T ss_dssp CSEEEEEEEC--CEEEEEEESCHHHHGGG--SCGGGTTCEEEEEECSSCTTT-CGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred ccchhheeccCCceEEEEEECcHHHHHhh--cccccCCeEEEEEECCCCccc-ChhhcCHHHHHHHHHHcCCCcEEE
Confidence 00000 0000124688999999885211 212 279999975422111 1222 2578999999999999998
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.4e-06 Score=80.45 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc----C--CCEEEEEeCCHH--------------------------HHHHHHHHHHhC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA----G--ASRVIAVEASEK--------------------------MAAVATQIAKDN 343 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~----G--~~~V~gvD~S~~--------------------------~i~~A~~~~~~~ 343 (497)
..++.||++|+.+|..++.++.. | ..+|+++|..+. .++.+++++++.
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 45679999999999988887654 1 458999996421 366789999988
Q ss_pred CCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 344 DFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 344 gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
|+. .++|+++.|++.+.-. .++..+||+|+... - .+. .....|..+...|+|||+|+++..
T Consensus 185 gl~------------~~~I~li~Gda~etL~--~~~~~~~d~vfIDa---D-~y~-~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLL------------DEQVRFLPGWFKDTLP--TAPIDTLAVLRMDG---D-LYE-STWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCC------------STTEEEEESCHHHHST--TCCCCCEEEEEECC---C-SHH-HHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCC------------cCceEEEEeCHHHHHh--hCCCCCEEEEEEcC---C-ccc-cHHHHHHHHHhhcCCCEEEEEcCC
Confidence 872 1589999999977532 13357899999653 2 222 234678889999999999997654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4.5e-06 Score=84.53 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=56.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.+|.+|||+||++|.++..+++.|+ +|+|||+.+ |.. .+... ++|+++++|+..+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~----~l~~~----------------~~V~~~~~d~~~~~- 265 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQ----SLMDT----------------GQVTWLREDGFKFR- 265 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCH----HHHTT----------------TCEEEECSCTTTCC-
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cCh----hhccC----------------CCeEEEeCcccccc-
Confidence 46899999999999999999999987 999999875 221 11111 57999999998874
Q ss_pred ccCCCCCceeEEEecc
Q 010913 375 SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~ 390 (497)
.+..+||+|+|..
T Consensus 266 ---~~~~~~D~vvsDm 278 (375)
T 4auk_A 266 ---PTRSNISWMVCDM 278 (375)
T ss_dssp ---CCSSCEEEEEECC
T ss_pred ---CCCCCcCEEEEcC
Confidence 4567899999984
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.4e-06 Score=79.45 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=73.0
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.|.....+.++.+|||+||++|.++..++.. |+.+|+|+|+-..-.+. -..++..|. ..|+|..
T Consensus 69 ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw--------------n~v~fk~ 133 (267)
T 3p8z_A 69 WFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW--------------NIVKLMS 133 (267)
T ss_dssp HHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT--------------TSEEEEC
T ss_pred HHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc--------------CceEEEe
Confidence 3444446678999999999999999988877 88899999997632210 001112232 5789999
Q ss_pred c-chhhcccccCCCCCceeEEEeccccccccC-hhh---HHHHHHHHhccccCCcEEe
Q 010913 367 G-MVEELGESMQIQPHSVDVLVSEWMGYCLLY-ESM---LSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 g-d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-~~~---l~~vL~~~~r~LkpgG~li 419 (497)
+ |+..+ ++.++|+|+|. |+-.-.. ..+ -..+|.-+.++|++ |.++
T Consensus 134 gvDv~~~------~~~~~DtllcD-IgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc 183 (267)
T 3p8z_A 134 GKDVFYL------PPEKCDTLLCD-IGESSPSPTVEESRTIRVLKMVEPWLKN-NQFC 183 (267)
T ss_dssp SCCGGGC------CCCCCSEEEEC-CCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEE
T ss_pred ccceeec------CCccccEEEEe-cCCCCCChhhhhhHHHHHHHHHHHhccc-CCEE
Confidence 9 98665 34779999997 3332222 111 12367777899999 5555
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.04 E-value=6.1e-06 Score=80.43 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=64.5
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++..+.+.++.++||.+||.|..|..+++++. +|+|+|.++.+++.|++ +.. +++++++++
T Consensus 14 ~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~-L~~-----------------~rv~lv~~~ 74 (285)
T 1wg8_A 14 ALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG-LHL-----------------PGLTVVQGN 74 (285)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH-TCC-----------------TTEEEEESC
T ss_pred HHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-hcc-----------------CCEEEEECC
Confidence 33444567889999999999999999999854 99999999999998887 522 389999999
Q ss_pred hhhcccccC-CCCCceeEEEec
Q 010913 369 VEELGESMQ-IQPHSVDVLVSE 389 (497)
Q Consensus 369 ~~~l~~~l~-~~~~~fDvIvs~ 389 (497)
..++...+. ....+||.|+..
T Consensus 75 f~~l~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 75 FRHLKRHLAALGVERVDGILAD 96 (285)
T ss_dssp GGGHHHHHHHTTCSCEEEEEEE
T ss_pred cchHHHHHHHcCCCCcCEEEeC
Confidence 988753221 223579999965
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.7e-05 Score=78.43 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCCHhHHHHHHc----------------CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC---CCC-CCCC
Q 010913 298 GAVVMDIGCGTGILSLFAAQA----------------GASRVIAVEASEKMAAVATQIAKDNDFWWDRP---QSE-GNIN 357 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~----------------G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~---~~~-~~~~ 357 (497)
+.+|+|+|||+|..++.++.. +.-+|+..|+....-. ..++...-..... .+. ....
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn---~lF~~L~~~~~~~~~~~~~~~~~~ 129 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFN---TLFQLLPPLVSNTCMEECLAADGN 129 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHH---HHHHHSCCBCCCC--CCC---CCC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchH---HHHhhhhhhhhhcchhhhccccCC
Confidence 589999999999988877321 1126777776654332 1121111000000 000 0000
Q ss_pred CCCceEEEecchhhcccccCCCCCceeEEEeccccccccCh-----------------------------------hhHH
Q 010913 358 NAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE-----------------------------------SMLS 402 (497)
Q Consensus 358 ~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~-----------------------------------~~l~ 402 (497)
.+--+.-+.|....- .+|.++||+|+|+...+.+... .++.
T Consensus 130 ~~~f~~gvpgSFy~r----lfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~ 205 (374)
T 3b5i_A 130 RSYFVAGVPGSFYRR----LFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLA 205 (374)
T ss_dssp BCSEEEEEESCTTSC----CSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEecChhhhcc----cCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHH
Confidence 000122233333322 3789999999997633333211 2566
Q ss_pred HHHHHHhccccCCcEEeccC
Q 010913 403 SVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 403 ~vL~~~~r~LkpgG~li~~~ 422 (497)
.+|..+.+.|+|||++++..
T Consensus 206 ~fL~~ra~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 206 EFLRARAAEVKRGGAMFLVC 225 (374)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEE
Confidence 78999999999999999543
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.5e-05 Score=74.95 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=72.7
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..|.....+.++.+||||||++|.++..++.. |+..|+|+|+...-.+. -..++..+. ..|.++
T Consensus 84 ~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w--------------~lV~~~ 148 (321)
T 3lkz_A 84 RWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGW--------------NIVTMK 148 (321)
T ss_dssp HHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTG--------------GGEEEE
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCC--------------cceEEE
Confidence 34444456778899999999999999988776 88899999997641100 000001111 347888
Q ss_pred ec-chhhcccccCCCCCceeEEEeccccccccC-hhh---HHHHHHHHhccccCC-cEEec
Q 010913 366 QG-MVEELGESMQIQPHSVDVLVSEWMGYCLLY-ESM---LSSVLFARDQWLKPG-GAILP 420 (497)
Q Consensus 366 ~g-d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-~~~---l~~vL~~~~r~Lkpg-G~li~ 420 (497)
.+ |+..+ ++.++|+|+|.. +-.-.. ..+ -..+|.-+.++|++| |.+++
T Consensus 149 ~~~Dv~~l------~~~~~D~ivcDi-geSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 149 SGVDVFYR------PSECCDTLLCDI-GESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSCCTTSS------CCCCCSEEEECC-CCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eccCHhhC------CCCCCCEEEEEC-ccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 87 88765 346799999873 322111 111 123677778999998 77763
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=77.37 Aligned_cols=110 Identities=18% Similarity=0.194 Sum_probs=64.2
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHh-CCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD-NDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~-~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..|-+..-+.+|.+|||+||+.|..|..+++. +...|.|.++.... . ....... .|. .-+++
T Consensus 63 ~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv--------------~~i~~ 126 (269)
T 2px2_A 63 RWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGW--------------NIVTM 126 (269)
T ss_dssp HHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTG--------------GGEEE
T ss_pred HHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCc--------------eEEEe
Confidence 33444444578999999999999999999987 34344454443210 0 0000000 111 12466
Q ss_pred Eec-chhhcccccCCCCCceeEEEeccccccccC-hhhHH---HHHHHHhccccCCc-EEe
Q 010913 365 VQG-MVEELGESMQIQPHSVDVLVSEWMGYCLLY-ESMLS---SVLFARDQWLKPGG-AIL 419 (497)
Q Consensus 365 i~g-d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-~~~l~---~vL~~~~r~LkpgG-~li 419 (497)
.++ |+.++ ++.++|+|+|.... .-.. .-+-. .+|.-+.++|+||| .++
T Consensus 127 ~~G~Df~~~------~~~~~DvVLSDMAP-nSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 127 KSGVDVFYK------PSEISDTLLCDIGE-SSPSAEIEEQRTLRILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp ECSCCGGGS------CCCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred eccCCccCC------CCCCCCEEEeCCCC-CCCccHHHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 667 98874 35689999998422 2111 11111 25666779999999 666
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=7.9e-06 Score=79.81 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.++.+|||+||++|.++..+++. |+..|+|+|+...+...... .... ..++......+.-.
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~---------------~~~iv~~~~~~di~- 141 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTL---------------GWNIVKFKDKSNVF- 141 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBT---------------TGGGEEEECSCCTT-
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cccc---------------CCceEEeecCceee-
Confidence 467899999999999999999975 77889999997532100000 0000 11233233222211
Q ss_pred cccCCCCCceeEEEeccccccccChhh-----HHHHHHHHhccccCC-cEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESM-----LSSVLFARDQWLKPG-GAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~-----l~~vL~~~~r~Lkpg-G~li~~ 421 (497)
.+.+.++|+|+|..... ..... ...+|.-+.++|+|| |.++.-
T Consensus 142 ---~l~~~~~DlVlsD~APn--sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 142 ---TMPTEPSDTLLCDIGES--SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp ---TSCCCCCSEEEECCCCC--CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred ---ecCCCCcCEEeecCcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 24568899999975333 11111 123467778999999 999844
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=4.7e-05 Score=77.81 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCHhHHHHHHc------------------CCCEEEEEeCC-----------HHHHHHHHHHHHhCCCCCC
Q 010913 298 GAVVMDIGCGTGILSLFAAQA------------------GASRVIAVEAS-----------EKMAAVATQIAKDNDFWWD 348 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~------------------G~~~V~gvD~S-----------~~~i~~A~~~~~~~gl~~~ 348 (497)
..+|+|+|||+|..++.+... +.-+|+..|+. +.+.+.+++ ..|-
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~--- 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGR--- 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCC---
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccC---
Confidence 579999999999988876654 11378888987 444433222 2221
Q ss_pred CCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccCh------------------------------
Q 010913 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE------------------------------ 398 (497)
Q Consensus 349 ~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~------------------------------ 398 (497)
..+..|+.|....+-. ..+|.+++|+|+|+...+.+...
T Consensus 127 ----------~~~~~f~~gvpgSFy~-rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~a 195 (384)
T 2efj_A 127 ----------KIGSCLIGAMPGSFYS-RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKA 195 (384)
T ss_dssp ----------CTTSEEEEECCSCTTS-CCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHH
T ss_pred ----------CCCceEEEecchhhhh-ccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHH
Confidence 0123455554433321 13789999999997633322211
Q ss_pred ------hhHHHHHHHHhccccCCcEEecc
Q 010913 399 ------SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 399 ------~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++..+|..+.+.|+|||++++.
T Consensus 196 y~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~ 224 (384)
T 2efj_A 196 YLDQFTKDFTTFLRIHSEELISRGRMLLT 224 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 12334588889999999999843
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.74 E-value=8.5e-05 Score=79.45 Aligned_cols=94 Identities=16% Similarity=0.055 Sum_probs=66.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----C----------CCEEEEEeCCHHHHHHHHHHHHhCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----G----------ASRVIAVEASEKMAAVATQIAKDNDFWWDR 349 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G----------~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~ 349 (497)
...+.|.......++.+|+|-+||||.+.+.+.+. + ...++|+|+++.+...|+-++--.|+
T Consensus 204 ~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~---- 279 (530)
T 3ufb_A 204 PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL---- 279 (530)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC----
Confidence 44555555556678889999999999998877653 1 13699999999999999988777665
Q ss_pred CCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc
Q 010913 350 PQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM 391 (497)
Q Consensus 350 ~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~ 391 (497)
+...+..+|.............+||+|+++++
T Consensus 280 ----------~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 280 ----------EYPRIDPENSLRFPLREMGDKDRVDVILTNPP 311 (530)
T ss_dssp ----------SCCEEECSCTTCSCGGGCCGGGCBSEEEECCC
T ss_pred ----------ccccccccccccCchhhhcccccceEEEecCC
Confidence 23456677765432111123457999999975
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.2e-05 Score=66.46 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCC-HhHHHHHH-cCCCEEEEEeCCHHHH
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTG-ILSLFAAQ-AGASRVIAVEASEKMA 333 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG-~ls~~la~-~G~~~V~gvD~S~~~i 333 (497)
.+..+|.+.. .++.+|||||||.| ..+..|++ .|. .|+|+|+++..+
T Consensus 24 ~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av 72 (153)
T 2k4m_A 24 DLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHG 72 (153)
T ss_dssp HHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSST
T ss_pred HHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCcccc
Confidence 4555555543 45689999999999 59999997 788 899999998544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.62 E-value=8.3e-05 Score=73.49 Aligned_cols=47 Identities=32% Similarity=0.375 Sum_probs=43.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~ 343 (497)
.+|.+|||++||+|..++.+++.|. +++|+|+++.+++.|++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999987 9999999999999999998653
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.56 E-value=6.7e-05 Score=76.05 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc------------C-----CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA------------G-----ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~------------G-----~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
...-+|+|+||++|..++.+... | .-+|+..|+..+....+-+.+.. +. .
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~--~~-----------~ 116 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI--EN-----------D 116 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTT--SC-----------S
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcch--hc-----------c
Confidence 34578999999999876654332 2 13788999887766544333211 10 0
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccC------------------------------hhhHHHHHHHH
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY------------------------------ESMLSSVLFAR 408 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~------------------------------~~~l~~vL~~~ 408 (497)
..+..|+.|....+-. ..+|.+++|+|+|+...+.+.. ..++..+|..+
T Consensus 117 ~~~~~f~~gvpgSFy~-rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~R 195 (359)
T 1m6e_X 117 VDGVCFINGVPGSFYG-RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCR 195 (359)
T ss_dssp CTTCEEEEEEESCSSS-CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecchhhhh-ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123444443333211 2488999999999753222211 23556779999
Q ss_pred hccccCCcEEecc
Q 010913 409 DQWLKPGGAILPD 421 (497)
Q Consensus 409 ~r~LkpgG~li~~ 421 (497)
.+.|+|||++++.
T Consensus 196 a~EL~pGG~mvl~ 208 (359)
T 1m6e_X 196 AQEVVPGGRMVLT 208 (359)
T ss_dssp HHHBCTTCEEEEE
T ss_pred HHHhcCCceEEEE
Confidence 9999999999843
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00041 Score=69.12 Aligned_cols=85 Identities=18% Similarity=0.308 Sum_probs=64.5
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+.++..+.+.+|.+++|..||.|..|..+++. | ..+|+|+|.++.+++.|+ ++ . .+++++
T Consensus 47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~---------------~~Rv~l 108 (347)
T 3tka_A 47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D---------------DPRFSI 108 (347)
T ss_dssp HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C---------------CTTEEE
T ss_pred HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c---------------CCcEEE
Confidence 33455556788999999999999999999987 4 469999999999998773 22 1 258999
Q ss_pred EecchhhcccccCCC--CCceeEEEec
Q 010913 365 VQGMVEELGESMQIQ--PHSVDVLVSE 389 (497)
Q Consensus 365 i~gd~~~l~~~l~~~--~~~fDvIvs~ 389 (497)
++++..++...++-. .+++|.|+..
T Consensus 109 v~~nF~~l~~~L~~~g~~~~vDgILfD 135 (347)
T 3tka_A 109 IHGPFSALGEYVAERDLIGKIDGILLD 135 (347)
T ss_dssp EESCGGGHHHHHHHTTCTTCEEEEEEE
T ss_pred EeCCHHHHHHHHHhcCCCCcccEEEEC
Confidence 999998875332211 1369999965
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00052 Score=66.39 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=43.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl 345 (497)
.+|.+|||.+||+|..++.+++.|. +++|+|+++.+++.|+++++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence 6789999999999999999999987 999999999999999999987654
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00021 Score=69.60 Aligned_cols=103 Identities=9% Similarity=-0.006 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
.+..+||+-+|||.+++.+.+. ..+++.||.++..++..++++.. .++++++++|+...-..+
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~----------------~~~~~V~~~D~~~~L~~l 153 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF----------------NKKVYVNHTDGVSKLNAL 153 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT----------------TSCEEEECSCHHHHHHHH
T ss_pred cCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc----------------CCcEEEEeCcHHHHHHHh
Confidence 3567899999999999999985 47999999999888766665432 257999999975532111
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhc--cccCCcEEe
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQ--WLKPGGAIL 419 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r--~LkpgG~li 419 (497)
.-+..+||+|+..+. |.. ......++..+.+ .+.|+|+++
T Consensus 154 ~~~~~~fdLVfiDPP-Ye~--k~~~~~vl~~L~~~~~r~~~Gi~v 195 (283)
T 2oo3_A 154 LPPPEKRGLIFIDPS-YER--KEEYKEIPYAIKNAYSKFSTGLYC 195 (283)
T ss_dssp CSCTTSCEEEEECCC-CCS--TTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred cCCCCCccEEEECCC-CCC--CcHHHHHHHHHHHhCccCCCeEEE
Confidence 123457999998762 221 2355666666544 567999987
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0012 Score=66.84 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
++..|||||.|.|.+|..+++. .+++|++||+++.++...++.. .. ++++++.+|+..++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~----------------~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG----------------SPLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT----------------SSCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC----------------CCEEEEECCccchh
Confidence 4689999999999999999986 4569999999999998887765 21 58999999997653
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0021 Score=62.41 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCCCCCCEEEEEcC------CCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 293 PSLMKGAVVMDIGC------GTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 293 ~~~~~~~~VLDvGC------GtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
...+.|.+|||+|+ -+|. ..+.+.+. ..|+++|+.+-.. . .. .+
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s----------d---------------a~-~~ 156 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS----------D---------------AD-ST 156 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC----------S---------------SS-EE
T ss_pred EeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc----------C---------------CC-eE
Confidence 45678999999997 4555 34444433 2999999987211 0 12 45
Q ss_pred EecchhhcccccCCCCCceeEEEeccc----ccccc----ChhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWM----GYCLL----YESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~----~~~l~----~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++||...+. ...+||+|+|... +..-. ...-...++.-+.++|+|||.++
T Consensus 157 IqGD~~~~~-----~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 157 LIGDCATVH-----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp EESCGGGEE-----ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEccccccc-----cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 999987753 3588999999741 22100 01124566677789999999998
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0038 Score=63.26 Aligned_cols=97 Identities=24% Similarity=0.290 Sum_probs=65.5
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG- 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g- 367 (497)
....+.+|.+||-+|||. |.++..+|++ |+.+|+++|.++..++.|++. |. + .++..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga--------------~--~vi~~~ 243 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA--------------T--HVINSK 243 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC--------------S--EEEETT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC--------------C--EEecCC
Confidence 455678899999999986 7788888887 887899999999888777643 32 1 11221
Q ss_pred --ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 --MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 --d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++ ..+. ....+.+|+|+-.. + . ...+....+.|+|||+++
T Consensus 244 ~~~~~~~~~---~~~~gg~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv 286 (371)
T 1f8f_A 244 TQDPVAAIK---EITDGGVNFALEST-G----S----PEILKQGVDALGILGKIA 286 (371)
T ss_dssp TSCHHHHHH---HHTTSCEEEEEECS-C----C----HHHHHHHHHTEEEEEEEE
T ss_pred ccCHHHHHH---HhcCCCCcEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 11 1111 11123799999542 1 1 245677788999999987
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0057 Score=62.36 Aligned_cols=73 Identities=26% Similarity=0.175 Sum_probs=56.1
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc-c-
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES-M- 376 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~-l- 376 (497)
.+|||+.||.|.+++.+.++|+..|.|+|+++.+++..+.+. ....++.+|+.++... +
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-------------------~~~~~~~~DI~~~~~~~~~ 63 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-------------------PRSLHVQEDVSLLNAEIIK 63 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-------------------TTSEEECCCGGGCCHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-------------------CCCceEecChhhcCHHHHH
Confidence 479999999999999999999988889999998877666553 3457788998876411 0
Q ss_pred --CCCCCceeEEEecc
Q 010913 377 --QIQPHSVDVLVSEW 390 (497)
Q Consensus 377 --~~~~~~fDvIvs~~ 390 (497)
.+....+|+|+..+
T Consensus 64 ~~~~~~~~~D~i~ggp 79 (376)
T 3g7u_A 64 GFFKNDMPIDGIIGGP 79 (376)
T ss_dssp HHHCSCCCCCEEEECC
T ss_pred hhcccCCCeeEEEecC
Confidence 01346799999765
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0034 Score=63.21 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..+|||+.||.|.+++.+.++| +..|+++|+++.+++..+.+. +...++.+|+.++...
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~-------------------~~~~~~~~Di~~~~~~ 62 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-------------------PHTQLLAKTIEGITLE 62 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------------------TTSCEECSCGGGCCHH
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc-------------------cccccccCCHHHccHh
Confidence 3589999999999999999999 558999999998888777664 2335678898876410
Q ss_pred cCCCCCceeEEEecc
Q 010913 376 MQIQPHSVDVLVSEW 390 (497)
Q Consensus 376 l~~~~~~fDvIvs~~ 390 (497)
.++...+|+|+..+
T Consensus 63 -~~~~~~~D~l~~gp 76 (343)
T 1g55_A 63 -EFDRLSFDMILMSP 76 (343)
T ss_dssp -HHHHHCCSEEEECC
T ss_pred -HcCcCCcCEEEEcC
Confidence 01112589999765
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.19 E-value=0.011 Score=59.04 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..+.+|+|+.||.|.+++.+.++|+..|.++|+++.+++..+.+... .. .+|+.++...
T Consensus 9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~------------------~~---~~Di~~~~~~ 67 (327)
T 2c7p_A 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE------------------KP---EGDITQVNEK 67 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC------------------CC---BSCGGGSCGG
T ss_pred cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC------------------CC---cCCHHHcCHh
Confidence 34679999999999999999999998899999999888877776521 11 5788776421
Q ss_pred cCCCCCceeEEEecc
Q 010913 376 MQIQPHSVDVLVSEW 390 (497)
Q Consensus 376 l~~~~~~fDvIvs~~ 390 (497)
.-..+|+|+..+
T Consensus 68 ---~~~~~D~l~~gp 79 (327)
T 2c7p_A 68 ---TIPDHDILCAGF 79 (327)
T ss_dssp ---GSCCCSEEEEEC
T ss_pred ---hCCCCCEEEECC
Confidence 123589999754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0078 Score=60.09 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=63.9
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
....+.+|.+||-+|+|. |.++..+|++ |+ +|++++.++.-.+.+++ .|. + .++...
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa--------------~--~~i~~~ 218 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGA--------------E--VAVNAR 218 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTC--------------S--EEEETT
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCC--------------C--EEEeCC
Confidence 345678899999999986 8888888887 88 99999999987776654 342 1 112111
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
-.++...+.-..+.+|+|+-.. + -...+....++|+|||+++.
T Consensus 219 ~~~~~~~~~~~~g~~d~vid~~-g--------~~~~~~~~~~~l~~~G~iv~ 261 (340)
T 3s2e_A 219 DTDPAAWLQKEIGGAHGVLVTA-V--------SPKAFSQAIGMVRRGGTIAL 261 (340)
T ss_dssp TSCHHHHHHHHHSSEEEEEESS-C--------CHHHHHHHHHHEEEEEEEEE
T ss_pred CcCHHHHHHHhCCCCCEEEEeC-C--------CHHHHHHHHHHhccCCEEEE
Confidence 1111000000113689988532 1 13456677789999999884
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0068 Score=62.05 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g--- 367 (497)
..+.+|.+||-+|||. |.++..+|++ |+.+|+++|.++..++.+++ .|. .++..
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-----------------~~i~~~~~ 239 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF-----------------ETIDLRNS 239 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC-----------------EEEETTSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-----------------cEEcCCCc
Confidence 4567899999999986 7888888886 88799999999987766553 332 22221
Q ss_pred c--hhhcccccCCCCCceeEEEeccccccccC-----hhhHHHHHHHHhccccCCcEEec
Q 010913 368 M--VEELGESMQIQPHSVDVLVSEWMGYCLLY-----ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 d--~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-----~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+ ...+.. + .....+|+|+-..-+....+ .......+....++|+|||+++.
T Consensus 240 ~~~~~~~~~-~-~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 240 APLRDQIDQ-I-LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp SCHHHHHHH-H-HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred chHHHHHHH-H-hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 1 111110 0 12336999995421110000 00122356777889999999873
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.01 Score=60.17 Aligned_cols=100 Identities=23% Similarity=0.361 Sum_probs=64.9
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe---
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ--- 366 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~--- 366 (497)
...+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-.+.+++. |. + .++.
T Consensus 177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga--------------~--~vi~~~~ 236 (370)
T 4ej6_A 177 LSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GA--------------T--ATVDPSA 236 (370)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TC--------------S--EEECTTS
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC--------------C--EEECCCC
Confidence 34567899999999875 7778888887 888999999999877776653 32 1 1121
Q ss_pred cchh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 367 GMVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 367 gd~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++. .+........+.+|+|+-.. + . ...+....++|+|||.++.
T Consensus 237 ~~~~~~i~~~~~~~~gg~Dvvid~~-G----~----~~~~~~~~~~l~~~G~vv~ 282 (370)
T 4ej6_A 237 GDVVEAIAGPVGLVPGGVDVVIECA-G----V----AETVKQSTRLAKAGGTVVI 282 (370)
T ss_dssp SCHHHHHHSTTSSSTTCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHhhhhccCCCCCEEEECC-C----C----HHHHHHHHHHhccCCEEEE
Confidence 1211 11100002234899999532 1 1 2356677789999999883
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.012 Score=59.17 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=62.3
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc---
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM--- 368 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd--- 368 (497)
.+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.++.-.+.+++ .|. + .++..+
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------------~--~vi~~~~~~ 227 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGA--------------D--LVLQISKES 227 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--------------S--EEEECSSCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC--------------C--EEEcCcccc
Confidence 567899999999875 7778888886 88799999999987766653 343 1 222211
Q ss_pred hhhccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 VEELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 ~~~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++...+ ......+|+|+-.. + . ...+....++|+|||+++.
T Consensus 228 ~~~~~~~i~~~~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 271 (356)
T 1pl8_A 228 PQEIARKVEGQLGCKPEVTIECT-G----A----EASIQAGIYATRSGGTLVL 271 (356)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEE
T ss_pred cchHHHHHHHHhCCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEE
Confidence 11110000 01115699999542 1 1 2345666789999999883
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.041 Score=55.08 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCC-------CCCCCC
Q 010913 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDF-------WWDRPQ 351 (497)
Q Consensus 280 ~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl-------~~~~~~ 351 (497)
.|+..+.+.+...+...+...|+.+|||.......+... +..+++-||. |.+++.-++.+...+. ......
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~ 158 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTA 158 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhccccccccc
Confidence 566666555544322235689999999999998888874 3338888898 7777777777665420 000000
Q ss_pred CCCCCCCCCceEEEecchhhccc------ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 352 SEGNINNAGKMEVVQGMVEELGE------SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 352 ~~~~~~~~~~i~~i~gd~~~l~~------~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.......+++.+++.+|+.+... ..+ ......+++++.+... +.+.....+|..+.+.+ |+|.++
T Consensus 159 ~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~Y-L~~~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 159 KSPFLIDQGRYKLAACDLNDITETTRLLDVCT-KREIPTIVISECLLCY-MHNNESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp CTTEEEECSSEEEEECCTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGG-SCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred ccccccCCCceEEEecCCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhC-CCHHHHHHHHHHHHhhC-CCcEEE
Confidence 00001123678999999987431 122 3456889998875443 34567788888888776 677654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.013 Score=59.38 Aligned_cols=99 Identities=24% Similarity=0.299 Sum_probs=65.3
Q ss_pred HHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 289 ILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
+.....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.++.-++.|+ ..|. + .++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa--------------~--~vi~ 244 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGV--------------N--EFVN 244 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTC--------------C--EEEC
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCC--------------c--EEEc
Confidence 44556778899999999975 7788888887 9888999999987776655 3343 1 1221
Q ss_pred c-----chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC-cEEe
Q 010913 367 G-----MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG-GAIL 419 (497)
Q Consensus 367 g-----d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg-G~li 419 (497)
. ++. .+. ....+.+|+|+-.. + . ...+....+.|+|| |+++
T Consensus 245 ~~~~~~~~~~~i~---~~~~gg~D~vid~~-g----~----~~~~~~~~~~l~~g~G~iv 292 (378)
T 3uko_A 245 PKDHDKPIQEVIV---DLTDGGVDYSFECI-G----N----VSVMRAALECCHKGWGTSV 292 (378)
T ss_dssp GGGCSSCHHHHHH---HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEE
T ss_pred cccCchhHHHHHH---HhcCCCCCEEEECC-C----C----HHHHHHHHHHhhccCCEEE
Confidence 1 111 111 11234799999542 1 1 34567778899997 9987
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.024 Score=58.40 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHH-Hc-C-CCEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 295 LMKGAVVMDIGCGTGILSLFAA-QA-G-ASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la-~~-G-~~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
+.++.+|+||||+.|..+..++ +. | ..+|+++|+++...+..++++.. |+.. ..+++++..-+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~------------~~~v~~~~~al 291 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNF------------ASRITVHGCGA 291 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTT------------GGGEEEECSEE
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCC------------CCCEEEEEeEE
Confidence 4688999999999999999888 44 3 36999999999999999999987 4321 14788777655
Q ss_pred hh
Q 010913 370 EE 371 (497)
Q Consensus 370 ~~ 371 (497)
.+
T Consensus 292 ~~ 293 (409)
T 2py6_A 292 GE 293 (409)
T ss_dssp CS
T ss_pred EC
Confidence 43
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.021 Score=57.50 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=65.9
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe---
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ--- 366 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~--- 366 (497)
...+.+|.+||-+|+|. |.++..+|++ |+..|+++|.++.-.+.+++. .. ..+.+..
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~-----------------~~~~~~~~~~ 235 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP-----------------EVVTHKVERL 235 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT-----------------TCEEEECCSC
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch-----------------hccccccccc
Confidence 34567899999999975 7788888887 886699999999988888765 21 1222221
Q ss_pred --cch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 367 --GMV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 367 --gd~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++ ..+.. ......+|+|+-.. + . ...+....++|+|||+++.
T Consensus 236 ~~~~~~~~v~~--~t~g~g~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~ 281 (363)
T 3m6i_A 236 SAEESAKKIVE--SFGGIEPAVALECT-G----V----ESSIAAAIWAVKFGGKVFV 281 (363)
T ss_dssp CHHHHHHHHHH--HTSSCCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEE
T ss_pred chHHHHHHHHH--HhCCCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEE
Confidence 111 11110 02345799999542 1 1 2356667789999999883
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.015 Score=58.42 Aligned_cols=98 Identities=23% Similarity=0.329 Sum_probs=64.6
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG- 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g- 367 (497)
....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.++.-++.+++. |. + .++..
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga--------------~--~vi~~~ 219 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GA--------------T--DIINYK 219 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TC--------------C--EEECGG
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CC--------------c--eEEcCC
Confidence 345668899999999886 7788888887 887899999999877777654 32 1 22221
Q ss_pred --chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 --MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 --d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++. .+.. ......+|+|+-.. + . ...+....++|+|||+++
T Consensus 220 ~~~~~~~v~~--~t~g~g~D~v~d~~-g----~----~~~~~~~~~~l~~~G~~v 263 (352)
T 3fpc_A 220 NGDIVEQILK--ATDGKGVDKVVIAG-G----D----VHTFAQAVKMIKPGSDIG 263 (352)
T ss_dssp GSCHHHHHHH--HTTTCCEEEEEECS-S----C----TTHHHHHHHHEEEEEEEE
T ss_pred CcCHHHHHHH--HcCCCCCCEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 111 1110 02344799999532 1 1 135566678999999988
|
| >3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0097 Score=42.26 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=41.9
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.+..|-.|++.|.+...+..||+..++- ....|..|+..|.....|..||..
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------------~~~~C~~C~~~f~~~~~l~~H~~~ 54 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTGE---------------------------KPYKCEFCEYAAAQKTSLRYHLER 54 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHCC---------------------------CCEECSSSSCEESSHHHHHHHHHH
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCCC---------------------------CCcCCCCCcchhCCHHHHHHHHHH
Confidence 4679999999999999999999864431 113599999999999999999974
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.028 Score=56.81 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=63.6
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG- 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g- 367 (497)
....+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-++.+++ .|. + .++..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------------~--~vi~~~ 244 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGA--------------T--ECLNPK 244 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTC--------------S--EEECGG
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC--------------c--EEEecc
Confidence 445678899999999875 7777888887 88789999999877766653 343 1 11211
Q ss_pred ----chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC-cEEe
Q 010913 368 ----MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG-GAIL 419 (497)
Q Consensus 368 ----d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg-G~li 419 (497)
++. .+. ....+.+|+|+-.. + . ...+....++|+|+ |.++
T Consensus 245 ~~~~~~~~~i~---~~t~gg~Dvvid~~-g----~----~~~~~~~~~~l~~~~G~iv 290 (373)
T 1p0f_A 245 DYDKPIYEVIC---EKTNGGVDYAVECA-G----R----IETMMNALQSTYCGSGVTV 290 (373)
T ss_dssp GCSSCHHHHHH---HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEE
T ss_pred cccchHHHHHH---HHhCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCCEEE
Confidence 111 111 01124799999532 1 1 23566777899999 9987
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.033 Score=56.18 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=64.5
Q ss_pred HhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 290 LENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 290 ~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.....+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-++.+++. |. + .++..
T Consensus 183 ~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga--------------~--~vi~~ 242 (373)
T 2fzw_A 183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA--------------T--ECINP 242 (373)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC--------------S--EEECG
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CC--------------c--eEecc
Confidence 3445678899999999875 6777788876 887899999999877777643 32 1 11211
Q ss_pred -----chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC-cEEec
Q 010913 368 -----MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG-GAILP 420 (497)
Q Consensus 368 -----d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg-G~li~ 420 (497)
++. .+. ....+.+|+|+-.. + . ...+....++|+|+ |.++.
T Consensus 243 ~~~~~~~~~~v~---~~~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 290 (373)
T 2fzw_A 243 QDFSKPIQEVLI---EMTDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVSVV 290 (373)
T ss_dssp GGCSSCHHHHHH---HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred ccccccHHHHHH---HHhCCCCCEEEECC-C----c----HHHHHHHHHhhccCCcEEEE
Confidence 111 111 01124799999542 1 1 23566778899999 99873
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.018 Score=58.78 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=65.5
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g--- 367 (497)
..+.+|.+||-+|||. |.++..+|++ |+.+|+++|.++.-++.|++ .|. .++..
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa-----------------~~i~~~~~ 239 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF-----------------EIADLSLD 239 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC-----------------EEEETTSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC-----------------cEEccCCc
Confidence 4567899999999876 7788888887 88789999999987776654 342 12221
Q ss_pred c--hhhcccccCCCCCceeEEEeccccccc-------cChhhHHHHHHHHhccccCCcEEe
Q 010913 368 M--VEELGESMQIQPHSVDVLVSEWMGYCL-------LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d--~~~l~~~l~~~~~~fDvIvs~~~~~~l-------~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ ...+.. + .....+|+|+-.. +.-- .+.......+....++|++||.++
T Consensus 240 ~~~~~~v~~-~-t~g~g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 297 (398)
T 1kol_A 240 TPLHEQIAA-L-LGEPEVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIG 297 (398)
T ss_dssp SCHHHHHHH-H-HSSSCEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEE
T ss_pred chHHHHHHH-H-hCCCCCCEEEECC-CCcccccccccccccchHHHHHHHHHHHhcCCEEE
Confidence 1 111110 0 1234799999643 2110 011123346777788999999987
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.056 Score=55.30 Aligned_cols=46 Identities=30% Similarity=0.444 Sum_probs=38.3
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
.+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.++.-++.+++.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l 257 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL 257 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 678899999999875 6777788877 888999999999888777654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.051 Score=54.77 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=64.5
Q ss_pred HhCCCCC-----CCCEEEEEc-CCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 290 LENPSLM-----KGAVVMDIG-CGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 290 ~~~~~~~-----~~~~VLDvG-CGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.....+. +|.+||-+| +|. |.++..+|++ +..+|++++.++.-++.+++ .|. +.
T Consensus 159 ~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGa--------------d~ 220 (363)
T 4dvj_A 159 FDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGA--------------HH 220 (363)
T ss_dssp HTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTC--------------SE
T ss_pred HHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCC--------------CE
Confidence 3445555 789999998 554 8888899986 55599999999887776654 343 11
Q ss_pred eEEEecch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+--...++ ..+. ....+.+|+|+-.. + -...+....++|+|||.++.
T Consensus 221 vi~~~~~~~~~v~---~~~~~g~Dvvid~~-g--------~~~~~~~~~~~l~~~G~iv~ 268 (363)
T 4dvj_A 221 VIDHSKPLAAEVA---ALGLGAPAFVFSTT-H--------TDKHAAEIADLIAPQGRFCL 268 (363)
T ss_dssp EECTTSCHHHHHH---TTCSCCEEEEEECS-C--------HHHHHHHHHHHSCTTCEEEE
T ss_pred EEeCCCCHHHHHH---HhcCCCceEEEECC-C--------chhhHHHHHHHhcCCCEEEE
Confidence 11001111 1221 12346899998532 1 13456777889999999884
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.012 Score=58.88 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=61.6
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.+|.+||-+|+|. |.++..+|++ |+ +|++++.++.-.+.+++ .|. +. ++ .+...
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa--------------~~--v~-~~~~~ 230 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGV--------------KH--FY-TDPKQ 230 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTC--------------SE--EE-SSGGG
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCC--------------Ce--ec-CCHHH
Confidence 668899999999975 7778888887 88 99999999877766654 443 22 22 33333
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+ . ..+|+|+-.. + .. ..+....++|+|||.++.
T Consensus 231 ~------~-~~~D~vid~~-g----~~----~~~~~~~~~l~~~G~iv~ 263 (348)
T 3two_A 231 C------K-EELDFIISTI-P----TH----YDLKDYLKLLTYNGDLAL 263 (348)
T ss_dssp C------C-SCEEEEEECC-C----SC----CCHHHHHTTEEEEEEEEE
T ss_pred H------h-cCCCEEEECC-C----cH----HHHHHHHHHHhcCCEEEE
Confidence 2 2 2799999542 1 11 134556789999999883
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.12 Score=49.62 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-------C-CCEEEEEeCCHHHH------------------------HHHHHHHH---
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-------G-ASRVIAVEASEKMA------------------------AVATQIAK--- 341 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-------G-~~~V~gvD~S~~~i------------------------~~A~~~~~--- 341 (497)
-+..|+++|+-.|..++.++.. + ..+|+++|.-+.+- +..++.+.
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3569999999999988876653 2 36999999221111 11111111
Q ss_pred ---hCCCCCCCCCCCCCCCCCCceEEEecchhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCc
Q 010913 342 ---DNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (497)
Q Consensus 342 ---~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG 416 (497)
..+. ..++|+++.|++.+.-..+ ..+..++|+|+... - .+. .....+..+...|+|||
T Consensus 149 ~~~~~g~------------~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D-~Y~-~t~~~le~~~p~l~~GG 211 (257)
T 3tos_A 149 CSDFFGH------------VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---D-LYE-PTKAVLEAIRPYLTKGS 211 (257)
T ss_dssp TTSTTTT------------SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---C-CHH-HHHHHHHHHGGGEEEEE
T ss_pred hhhhcCC------------CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---c-ccc-hHHHHHHHHHHHhCCCc
Confidence 1121 1378999999997752110 02455799999653 2 233 33457888899999999
Q ss_pred EEeccCc
Q 010913 417 AILPDTA 423 (497)
Q Consensus 417 ~li~~~~ 423 (497)
+|+++..
T Consensus 212 vIv~DD~ 218 (257)
T 3tos_A 212 IVAFDEL 218 (257)
T ss_dssp EEEESST
T ss_pred EEEEcCC
Confidence 9996654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.027 Score=56.73 Aligned_cols=98 Identities=23% Similarity=0.246 Sum_probs=62.9
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
....+.+|.+||-+|+|. |.++..+|++ |+ +|++++.++.-++.+++. |. + .++..+
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga--------------~--~vi~~~ 241 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GA--------------D--HGINRL 241 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TC--------------S--EEEETT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CC--------------C--EEEcCC
Confidence 456778999999999875 7777788877 88 999999999877776553 32 1 122211
Q ss_pred hhhccccc-C-CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESM-Q-IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l-~-~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..++...+ . .....+|+|+-.. + . ..+....++|+|||.++
T Consensus 242 ~~~~~~~v~~~~~g~g~D~vid~~-g-----~----~~~~~~~~~l~~~G~iv 284 (363)
T 3uog_A 242 EEDWVERVYALTGDRGADHILEIA-G-----G----AGLGQSLKAVAPDGRIS 284 (363)
T ss_dssp TSCHHHHHHHHHTTCCEEEEEEET-T-----S----SCHHHHHHHEEEEEEEE
T ss_pred cccHHHHHHHHhCCCCceEEEECC-C-----h----HHHHHHHHHhhcCCEEE
Confidence 11110000 0 1234799999542 1 1 13455667899999988
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.017 Score=58.51 Aligned_cols=95 Identities=24% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+.+|.+||-+|+|. |.++..+|++ |+ +|++++.++.-++.+++. |. + .++...-.
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l----Ga--------------~--~vi~~~~~ 248 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GA--------------D--EVVNSRNA 248 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TC--------------S--EEEETTCH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC--------------c--EEeccccH
Confidence 3567899999999985 7778888876 88 799999998877777652 32 1 12221111
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+... .+. ..+|+|+... + .. ..+....+.|+|+|.++.
T Consensus 249 ~~~~--~~~-~g~Dvvid~~-g----~~----~~~~~~~~~l~~~G~iv~ 286 (369)
T 1uuf_A 249 DEMA--AHL-KSFDFILNTV-A----AP----HNLDDFTTLLKRDGTMTL 286 (369)
T ss_dssp HHHH--TTT-TCEEEEEECC-S----SC----CCHHHHHTTEEEEEEEEE
T ss_pred HHHH--Hhh-cCCCEEEECC-C----CH----HHHHHHHHHhccCCEEEE
Confidence 1110 112 5799999542 1 11 134556689999999873
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.032 Score=56.41 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=63.5
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG- 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g- 367 (497)
....+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-++.+++ .|. + .++..
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa--------------~--~vi~~~ 245 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGA--------------T--DFVNPN 245 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--------------C--EEECGG
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCC--------------c--eEEecc
Confidence 445678899999999875 6777788876 88789999999887776653 343 1 11211
Q ss_pred ----chhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC-cEEec
Q 010913 368 ----MVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG-GAILP 420 (497)
Q Consensus 368 ----d~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg-G~li~ 420 (497)
++.+ +. ....+.+|+|+-.. + . ...+....++|+|| |.++.
T Consensus 246 ~~~~~~~~~~~---~~~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 292 (374)
T 1cdo_A 246 DHSEPISQVLS---KMTNGGVDFSLECV-G----N----VGVMRNALESCLKGWGVSVL 292 (374)
T ss_dssp GCSSCHHHHHH---HHHTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred ccchhHHHHHH---HHhCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCcEEEE
Confidence 1111 11 01123799999542 1 1 23566777899999 99873
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.035 Score=56.34 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=62.3
Q ss_pred CCC-CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 292 NPS-LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 292 ~~~-~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
... +.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-++.+++ .|. + .++...
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa--------------~--~vi~~~ 248 (380)
T 1vj0_A 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGA--------------D--LTLNRR 248 (380)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTC--------------S--EEEETT
T ss_pred hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCC--------------c--EEEecc
Confidence 456 78899999999764 6777788877 85699999999987766653 343 1 222221
Q ss_pred ---hhhccccc-C-CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 ---VEELGESM-Q-IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ---~~~l~~~l-~-~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-.++...+ . .....+|+|+-.. + . ...+....++|+|||.++
T Consensus 249 ~~~~~~~~~~v~~~~~g~g~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv 295 (380)
T 1vj0_A 249 ETSVEERRKAIMDITHGRGADFILEAT-G----D----SRALLEGSELLRRGGFYS 295 (380)
T ss_dssp TSCHHHHHHHHHHHTTTSCEEEEEECS-S----C----TTHHHHHHHHEEEEEEEE
T ss_pred ccCcchHHHHHHHHhCCCCCcEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 11110000 0 1234699999542 1 1 124556678899999987
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.034 Score=56.27 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=63.9
Q ss_pred HhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 290 LENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 290 ~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.....+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.++.-++.+++ .|. + .++..
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------------~--~vi~~ 247 (376)
T 1e3i_A 188 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA--------------T--DCLNP 247 (376)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--------------S--EEECG
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC--------------c--EEEcc
Confidence 3445678899999999875 6777788876 88789999999877766653 343 1 11211
Q ss_pred -----chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC-cEEec
Q 010913 368 -----MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG-GAILP 420 (497)
Q Consensus 368 -----d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg-G~li~ 420 (497)
++. .+. ....+.+|+|+-.. + . ...+....++|++| |+++.
T Consensus 248 ~~~~~~~~~~v~---~~~~~g~Dvvid~~-G----~----~~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 248 RELDKPVQDVIT---ELTAGGVDYSLDCA-G----T----AQTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp GGCSSCHHHHHH---HHHTSCBSEEEESS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred ccccchHHHHHH---HHhCCCccEEEECC-C----C----HHHHHHHHHHhhcCCCEEEE
Confidence 111 111 01123799999532 1 1 23566778899999 99873
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.31 E-value=0.039 Score=55.71 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=63.1
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG- 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g- 367 (497)
....+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-++.+++ .|. + .++..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa--------------~--~vi~~~ 244 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGA--------------T--ECVNPQ 244 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--------------S--EEECGG
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC--------------c--eEeccc
Confidence 445678899999999875 6777778876 88789999999877766653 343 1 11211
Q ss_pred ----chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC-cEEec
Q 010913 368 ----MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG-GAILP 420 (497)
Q Consensus 368 ----d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg-G~li~ 420 (497)
++. .+. ....+.+|+|+-.. + . ...+....++|+|+ |.++.
T Consensus 245 ~~~~~~~~~~~---~~~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 245 DYKKPIQEVLT---EMSNGGVDFSFEVI-G----R----LDTMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp GCSSCHHHHHH---HHTTSCBSEEEECS-C----C----HHHHHHHHHHBCTTTCEEEE
T ss_pred ccchhHHHHHH---HHhCCCCcEEEECC-C----C----HHHHHHHHHHhhcCCcEEEE
Confidence 111 111 01124799999542 1 1 23566677899999 99873
|
| >1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.022 Score=40.33 Aligned_cols=52 Identities=17% Similarity=0.412 Sum_probs=42.3
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
|..|-.|+..|.+...+..|++..++- ....|..|+..|.+...|..||...
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------------~~~~C~~C~~~f~~~~~l~~H~~~h 52 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTDV---------------------------RPYHCTYCNFSFKTKGNLTKHMKSK 52 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSSC---------------------------CCEECSSSSCEESSHHHHHHHHHSS
T ss_pred CCcCCCCcCcCCCHHHHHHHHHhcCCC---------------------------CCccCCCCCchhcCHHHHHHHHHHh
Confidence 457999999999999999999864431 1135999999999999999998743
|
| >2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.014 Score=42.92 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=44.9
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.+..|-.|++.|.+...+..|++..|.- + .....|..|+..|.+...|..||...
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~---------~----------------~~~~~C~~C~k~f~~~~~L~~H~~~~ 63 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYVTSHKR---------N----------------VKVYPCPFCFKEFTRKDNMTAHVKII 63 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHHHHSSS---------S----------------CCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred cceECCCCcchhCCHHHHHHHHHHHcCC---------C----------------CcCeECCCCCCccCCHHHHHHHHHHH
Confidence 4789999999999999999999987741 0 01135999999999999999999754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.059 Score=53.81 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=62.6
Q ss_pred HHhCCCCC------CCCEEEEEc-CCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 289 ILENPSLM------KGAVVMDIG-CGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 289 i~~~~~~~------~~~~VLDvG-CGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
+.....+. +|.+||-+| +|. |.++..++++ |+ +|++++.++.-++.+++. |.
T Consensus 136 l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga-------------- 196 (346)
T 3fbg_A 136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GA-------------- 196 (346)
T ss_dssp HHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TC--------------
T ss_pred HHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CC--------------
Confidence 33455555 899999994 543 6677777776 88 999999999877777653 32
Q ss_pred CceEEEecch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 360 GKMEVVQGMV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 360 ~~i~~i~gd~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.+--...+. ..+. ......+|+|+... + -...+....++|+|+|.++
T Consensus 197 ~~vi~~~~~~~~~~~---~~~~~g~Dvv~d~~-g--------~~~~~~~~~~~l~~~G~iv 245 (346)
T 3fbg_A 197 DIVLNHKESLLNQFK---TQGIELVDYVFCTF-N--------TDMYYDDMIQLVKPRGHIA 245 (346)
T ss_dssp SEEECTTSCHHHHHH---HHTCCCEEEEEESS-C--------HHHHHHHHHHHEEEEEEEE
T ss_pred cEEEECCccHHHHHH---HhCCCCccEEEECC-C--------chHHHHHHHHHhccCCEEE
Confidence 1110001111 1121 12345799999532 1 1345667778999999986
|
| >2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.018 Score=43.80 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=45.7
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.+..|-.|++.|.+...+..||+..|.=+ .....|..|+..|.....|..||...
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~-------------------------~~~~~C~~C~~~f~~~~~L~~H~~~~ 68 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTEN-------------------------VAKFHCPHCDTVIARKSDLGVHLRKQ 68 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSS-------------------------CSSEECSSSSCEESSHHHHHHHHHHT
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCC-------------------------CCccCCCCCCCccCCHHHHHHHHHHh
Confidence 57899999999999999999998777521 01135999999999999999999865
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.07 Score=53.09 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=39.1
Q ss_pred HHhCCCCCCCCEEEEEcCCC--CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 289 ILENPSLMKGAVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt--G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
+.....+.+|.+||-+|+|. |.++..+++. |+ +|++++.++.-++.+++
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~ 187 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR 187 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence 34556788999999999984 6667777776 98 99999999887777765
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.044 Score=53.84 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCE--EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASR--VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~--V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..+.+|+|+-||.|.+++.+.++|... |.++|+++.+++..+.+. +...++.+|+.++.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-------------------~~~~~~~~DI~~i~ 74 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-------------------QGKIMYVGDVRSVT 74 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-------------------TTCEEEECCGGGCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-------------------CCCceeCCChHHcc
Confidence 456799999999999999999999865 799999998776544442 23467789998874
Q ss_pred cc-cCCCCCceeEEEecc
Q 010913 374 ES-MQIQPHSVDVLVSEW 390 (497)
Q Consensus 374 ~~-l~~~~~~fDvIvs~~ 390 (497)
.. ++ ....+|+|+..+
T Consensus 75 ~~~i~-~~~~~Dll~ggp 91 (295)
T 2qrv_A 75 QKHIQ-EWGPFDLVIGGS 91 (295)
T ss_dssp HHHHH-HTCCCSEEEECC
T ss_pred HHHhc-ccCCcCEEEecC
Confidence 21 11 124699999754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.046 Score=54.61 Aligned_cols=98 Identities=27% Similarity=0.320 Sum_probs=62.2
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG- 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g- 367 (497)
....+ +|.+||-+|+|. |.++..+|+. |+.+|++++.++.-++.+++. |. + .++..
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga--------------~--~~~~~~ 220 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GA--------------D--YVINPF 220 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TC--------------S--EEECTT
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CC--------------C--EEECCC
Confidence 34566 899999999964 6677777776 877899999998877766643 32 1 11211
Q ss_pred --chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 368 --MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 --d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++. .+.. + .....+|+|+... + . ...+....++|+++|.++.
T Consensus 221 ~~~~~~~v~~-~-~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 265 (348)
T 2d8a_A 221 EEDVVKEVMD-I-TDGNGVDVFLEFS-G----A----PKALEQGLQAVTPAGRVSL 265 (348)
T ss_dssp TSCHHHHHHH-H-TTTSCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CcCHHHHHHH-H-cCCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 111 1110 0 1234699999542 1 1 2356667789999999873
|
| >1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.024 Score=42.49 Aligned_cols=53 Identities=25% Similarity=0.461 Sum_probs=43.7
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.+..|-.|++.|.+...+..||+..++- ....|..|+..|.....|..||...
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~---------------------------~~~~C~~C~~~f~~~~~L~~H~~~H 65 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGE---------------------------KPYKCLECGKAFSQNSGLINHQRIH 65 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCS---------------------------CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCC---------------------------CCeECCCCCcccCCHHHHHHHHHhc
Confidence 5789999999999999999999854321 1135999999999999999999754
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.045 Score=54.25 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=52.9
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
+|||+-||.|.+++.+.++|..-|.++|+++.+++.-+.+. .-.++.+|+.++.. -.
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~--------------------~~~~~~~DI~~i~~---~~ 58 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH--------------------SAKLIKGDISKISS---DE 58 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC--------------------CSEEEESCGGGCCG---GG
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC--------------------CCCcccCChhhCCH---hh
Confidence 69999999999999999999988899999997766555442 22578899988752 12
Q ss_pred CCceeEEEecc
Q 010913 380 PHSVDVLVSEW 390 (497)
Q Consensus 380 ~~~fDvIvs~~ 390 (497)
-..+|+|+..+
T Consensus 59 ~~~~D~l~ggp 69 (331)
T 3ubt_Y 59 FPKCDGIIGGP 69 (331)
T ss_dssp SCCCSEEECCC
T ss_pred CCcccEEEecC
Confidence 34689999654
|
| >2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.024 Score=44.83 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=49.6
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
.+..|-.|+..|.+...+..||+..++-.. .....=+.-|...-.|..-++..... ..|..|+..|.+...|..||.
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 85 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCCCCCS-EECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHT
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcCCCCC-EeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence 578999999999999999999996654211 00111111222333344444443222 348889999988888888886
Q ss_pred H
Q 010913 123 E 123 (497)
Q Consensus 123 ~ 123 (497)
.
T Consensus 86 ~ 86 (96)
T 2dmd_A 86 S 86 (96)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.085 Score=47.87 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=58.2
Q ss_pred hCCCCCCCCEEEEEcCCC--CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe-
Q 010913 291 ENPSLMKGAVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ- 366 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt--G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~- 366 (497)
....+.+|++||.+|++. |.....+++. |+ +|++++.++...+.+++ .|. .. .+-.
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~--------------~~-~~d~~ 91 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGV--------------EY-VGDSR 91 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCC--------------SE-EEETT
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC--------------CE-EeeCC
Confidence 345677899999999643 5555555554 88 89999999876655432 332 11 1111
Q ss_pred -cch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 367 -GMV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 -gd~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+. ..+.. ......+|+|+.+. + ...+....+.|+|||+++
T Consensus 92 ~~~~~~~~~~--~~~~~~~D~vi~~~-g---------~~~~~~~~~~l~~~G~~v 134 (198)
T 1pqw_A 92 SVDFADEILE--LTDGYGVDVVLNSL-A---------GEAIQRGVQILAPGGRFI 134 (198)
T ss_dssp CSTHHHHHHH--HTTTCCEEEEEECC-C---------THHHHHHHHTEEEEEEEE
T ss_pred cHHHHHHHHH--HhCCCCCeEEEECC-c---------hHHHHHHHHHhccCCEEE
Confidence 111 11110 01234699999643 2 124667778999999988
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0083 Score=59.82 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl 345 (497)
.+|..|||..||+|..+..+.+.|. +.+|+|+++..+..|+++++..+.
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNI 299 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhccc
Confidence 6789999999999999999999987 999999999999999998866553
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.18 Score=49.73 Aligned_cols=130 Identities=11% Similarity=0.047 Sum_probs=83.6
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
..|+..+.+++...... ....|++||||-=.....+......+|+=|| -|..++..++.+...+.. .
T Consensus 85 ~~Rt~~~d~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~-----------~ 151 (310)
T 2uyo_A 85 AVRTNFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVT-----------P 151 (310)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCC-----------C
T ss_pred HHHHHHHHHHHHHHHHh-CCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCC-----------C
Confidence 35555555555443221 1246999999976655544422124899999 588898888888765431 1
Q ss_pred CCceEEEecchhhccc--cc---CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 359 AGKMEVVQGMVEELGE--SM---QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~--~l---~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..+..++.+|+.+ .. .+ .+.....=+++++.+.+.+ .......++..+...+.||+.|+++..
T Consensus 152 ~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl-~~~~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 152 TADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMYL-PATAQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp SSEEEEEECCTTS-CHHHHHHHTTCCTTSCEEEEECSCGGGS-CHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCCeEEEecchHh-hHHHHHHhccCCCCCCEEEEEechHhhC-CHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 3578899999875 21 01 1223445577777654444 345778899999999999999986654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.052 Score=53.85 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=63.0
Q ss_pred HHhCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 289 ILENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.....+.+|.+||-+|++ .|..+..+++. |+ +|++++.++.-++.+. +..|. + .++
T Consensus 141 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~---~~~g~--------------~--~~~ 200 (336)
T 4b7c_A 141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV---EELGF--------------D--GAI 200 (336)
T ss_dssp HHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH---HTTCC--------------S--EEE
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH---HHcCC--------------C--EEE
Confidence 3356677899999999983 46667777766 88 9999999987666552 22342 1 111
Q ss_pred ecchhhccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
...-.++...+ ....+.+|+|+... + ...+....+.|+|||.++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~d~vi~~~-g---------~~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 201 DYKNEDLAAGLKRECPKGIDVFFDNV-G---------GEILDTVLTRIAFKARIVL 246 (336)
T ss_dssp ETTTSCHHHHHHHHCTTCEEEEEESS-C---------HHHHHHHHTTEEEEEEEEE
T ss_pred ECCCHHHHHHHHHhcCCCceEEEECC-C---------cchHHHHHHHHhhCCEEEE
Confidence 11111110000 01135799999643 1 1256777899999999883
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.024 Score=57.01 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=60.7
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+.+|.+||-+|+|. |.++..+|++ |+ +|++++.++.-++.+++. |. + .++...-.
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----Ga--------------~--~v~~~~~~ 233 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GA--------------D--HYIATLEE 233 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TC--------------S--EEEEGGGT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----CC--------------C--EEEcCcCc
Confidence 4567899999999864 6777778876 88 799999998777776652 32 1 12221111
Q ss_pred -hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 371 -ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 371 -~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++... +. +.+|+|+... +.. . ...+....++|+|||.++.
T Consensus 234 ~~~~~~--~~-~~~D~vid~~-g~~--~----~~~~~~~~~~l~~~G~iv~ 274 (360)
T 1piw_A 234 GDWGEK--YF-DTFDLIVVCA-SSL--T----DIDFNIMPKAMKVGGRIVS 274 (360)
T ss_dssp SCHHHH--SC-SCEEEEEECC-SCS--T----TCCTTTGGGGEEEEEEEEE
T ss_pred hHHHHH--hh-cCCCEEEECC-CCC--c----HHHHHHHHHHhcCCCEEEE
Confidence 11111 12 5799999542 110 0 1123455689999999873
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.065 Score=53.58 Aligned_cols=96 Identities=24% Similarity=0.318 Sum_probs=60.6
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---c
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG---M 368 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g---d 368 (497)
.+.+|.+||-+|+|. |.++..+|++ |+ +|++++.++.-++.+++ .|. +.+ +-.. +
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa--------------~~~-~~~~~~~~ 224 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGA--------------DVT-LVVDPAKE 224 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTC--------------SEE-EECCTTTS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCC--------------CEE-EcCccccc
Confidence 567899999999875 6777778876 88 69999999987776653 343 111 1111 1
Q ss_pred -hhhcccccCCC---CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 -VEELGESMQIQ---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 -~~~l~~~l~~~---~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
...+.. ... ...+|+|+... + . ...+....++|+|+|.++.
T Consensus 225 ~~~~i~~--~~~~~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 269 (352)
T 1e3j_A 225 EESSIIE--RIRSAIGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLML 269 (352)
T ss_dssp CHHHHHH--HHHHHSSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHH--HhccccCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 111110 011 24699999542 1 1 2345666789999999883
|
| >2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.047 Score=41.03 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=43.6
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
..+..|-.|++.|.+...+..||+..++- ....|..|+..|.....|..||.-
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~---------------------------~~~~C~~C~k~f~~~~~L~~H~~~ 67 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKTVHTGE---------------------------KPYRCNICGAQFNRPANLKTHTRI 67 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHHHHCCC---------------------------CSEECTTTCCEESCHHHHHHHHHH
T ss_pred CCCeECCCCCceeCCHHHHHHHHHHcCCC---------------------------CCEECCCCCchhCCHHHHHHHHHh
Confidence 45789999999999999999999854320 113599999999999999999974
|
| >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.023 Score=44.86 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=50.6
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcc----cccccccCCccCCHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVA----ENRCWICGLTCQSNQDLQNH 120 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~----~~~c~~C~~~~~~~~~~~~H 120 (497)
.+..|-.|+..|.+...+..||+..++- -......=+.-|-..-.|..-+|.... ...|..|+..|.+...|..|
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H 84 (95)
T 2yt9_A 6 SGVACEICGKIFRDVYHLNRHKLSHSGE-KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84 (95)
T ss_dssp SCEECSSSCCEESSSHHHHHHHHHSCSS-CSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHH
T ss_pred CCeECCCCCCccCChHHHHHHHHhcCCC-CCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHH
Confidence 4789999999999999999999865442 111111112223333334455554432 23499999999999999999
Q ss_pred HHHh
Q 010913 121 LHEA 124 (497)
Q Consensus 121 m~~~ 124 (497)
|...
T Consensus 85 ~~~~ 88 (95)
T 2yt9_A 85 IKQV 88 (95)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.061 Score=52.88 Aligned_cols=90 Identities=20% Similarity=0.114 Sum_probs=60.7
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
....+.+|.+||-+|+|. |.++..+|++ |+ +|++++ ++.-.+.+++. |. -.++. |
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga----------------~~v~~-d 192 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GV----------------RHLYR-E 192 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TE----------------EEEES-S
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CC----------------CEEEc-C
Confidence 566778999999999964 7788888887 98 999999 88777766653 32 12232 3
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.. .+ ...+|+|+-.. +. . .+....++|+|+|+++.
T Consensus 193 ---~~---~v-~~g~Dvv~d~~-g~--------~-~~~~~~~~l~~~G~~v~ 227 (315)
T 3goh_A 193 ---PS---QV-TQKYFAIFDAV-NS--------Q-NAAALVPSLKANGHIIC 227 (315)
T ss_dssp ---GG---GC-CSCEEEEECC-----------------TTGGGEEEEEEEEE
T ss_pred ---HH---Hh-CCCccEEEECC-Cc--------h-hHHHHHHHhcCCCEEEE
Confidence 11 13 56899999432 11 1 12456789999999873
|
| >2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.035 Score=39.75 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=41.5
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
+..|-.|++.|.+...+..||+..++- ....|..|+..|.+...|..||..
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------------~~~~C~~C~~~f~~~~~l~~H~~~ 52 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNE---------------------------KPYPCGLCNRAFTRRDLLIRHAQK 52 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSS---------------------------CSEECTTTCCEESSHHHHHHHHTT
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCC---------------------------CCccCCCCCCccCCHHHHHHHHHH
Confidence 568999999999999999999864321 113599999999999999999853
|
| >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=44.46 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=39.2
Q ss_pred cceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcc--cccccccCCccCCHHHHHHHHHH
Q 010913 47 FLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVA--ENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 47 ~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~--~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
..|-.|+..|.+...+..||+..++-.. .....=+.-|...-.|..-++.... ...|..|+..|.+...|..||..
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 79 (82)
T 2kmk_A 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79 (82)
T ss_dssp EECSSSCCEESSHHHHHHHHHHHHTCCC-EECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred ccCCCCcccccCchhHHHHHHHcCCCCC-eeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence 4577777777777777777765433100 0000001111122223233332221 13488888888888888888764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.039 Score=55.01 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-h
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-E 370 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-~ 370 (497)
.+.+|.+||-+|+|. |.++..+|++ |..+|+++|.++.-++.+++ .|. +.+.-...+. .
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa--------------~~~i~~~~~~~~ 229 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGA--------------DAAVKSGAGAAD 229 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTC--------------SEEEECSTTHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC--------------CEEEcCCCcHHH
Confidence 467899999999976 7788888886 66699999999987776654 343 1111111111 1
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+.. + .....+|+|+-.. + . ...+....++|+|||.++.
T Consensus 230 ~v~~-~-t~g~g~d~v~d~~-G----~----~~~~~~~~~~l~~~G~iv~ 268 (345)
T 3jv7_A 230 AIRE-L-TGGQGATAVFDFV-G----A----QSTIDTAQQVVAVDGHISV 268 (345)
T ss_dssp HHHH-H-HGGGCEEEEEESS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred HHHH-H-hCCCCCeEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 1110 0 1234799999532 1 1 2356677889999999883
|
| >1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.031 Score=41.54 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=44.2
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
..+..|-.|++.|.+...+..||+..++- ....|..|+..|.....|..||..
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---------------------------~~~~C~~C~~~f~~~~~L~~H~~~ 59 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTD---------------------------RPFKCNYCSFDTKQPSNLSKHMKK 59 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCS---------------------------CSEECSSSSCEESSHHHHHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCC---------------------------CCEeCCCCCCccCCHHHHHHHHHH
Confidence 35789999999999999999999863320 112599999999999999999986
Q ss_pred h
Q 010913 124 A 124 (497)
Q Consensus 124 ~ 124 (497)
.
T Consensus 60 h 60 (70)
T 1x5w_A 60 F 60 (70)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.051 Score=43.80 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcc--cccccccCCccCCHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVA--ENRCWICGLTCQSNQDLQNHL 121 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~--~~~c~~C~~~~~~~~~~~~Hm 121 (497)
..+..|-.|...|.+...+..||+..++-.. .....=+.-|...-.|..-++.... ...|..|+..|.+...|..||
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~ 93 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCC-CBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHH
T ss_pred CcCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHH
Confidence 3578999999999999999999987664211 1111112223333333333333322 234999999999999999998
Q ss_pred HHh
Q 010913 122 HEA 124 (497)
Q Consensus 122 ~~~ 124 (497)
.-.
T Consensus 94 ~~H 96 (106)
T 2ee8_A 94 TLH 96 (106)
T ss_dssp HHT
T ss_pred HHh
Confidence 743
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.0067 Score=75.84 Aligned_cols=113 Identities=17% Similarity=0.051 Sum_probs=52.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-----CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-----ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-----~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
+.+.+..... .+..+||+||.|||..+..+.+. + ....+.+|+|+...+.|+++++..
T Consensus 1229 ~~~~~~~~~~-~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--------------- 1292 (2512)
T 2vz8_A 1229 CVDTALENMA-SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--------------- 1292 (2512)
T ss_dssp HHHHHHTTSS-SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------------
T ss_pred HHHHHHhcCC-CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------------
Confidence 4444443321 35679999999999875554433 2 247889999988777777665432
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+..-.-+..+. .++..++||+||+.. +++...++...|..++++|||||.+++.
T Consensus 1293 --di~~~~~d~~~~---~~~~~~~ydlvia~~---vl~~t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1293 --HVTQGQWDPANP---APGSLGKADLLVCNC---ALATLGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp --TEEEECCCSSCC---CC-----CCEEEEEC---C--------------------CCEEEEE
T ss_pred --cccccccccccc---ccCCCCceeEEEEcc---cccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 122111121111 023456799999543 5555567788999999999999998864
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.1 Score=51.45 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=63.1
Q ss_pred HHhCCCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 289 ILENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.....+.+|.+||-+|+ | .|.++..++++ |+ +|++++.++.-++.+++. |. . .++
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga---------------~-~~~ 190 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GA---------------W-ETI 190 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TC---------------S-EEE
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---------------C-EEE
Confidence 344556789999999994 3 46777777776 98 999999999877777643 32 1 112
Q ss_pred ecchhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
...-.++...+ ......+|+|+... +. ..+....++|+|||+++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~g~Dvvid~~-g~---------~~~~~~~~~l~~~G~iv~ 237 (325)
T 3jyn_A 191 DYSHEDVAKRVLELTDGKKCPVVYDGV-GQ---------DTWLTSLDSVAPRGLVVS 237 (325)
T ss_dssp ETTTSCHHHHHHHHTTTCCEEEEEESS-CG---------GGHHHHHTTEEEEEEEEE
T ss_pred eCCCccHHHHHHHHhCCCCceEEEECC-Ch---------HHHHHHHHHhcCCCEEEE
Confidence 11111110000 02345799999643 11 245566789999999883
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.11 Score=51.27 Aligned_cols=98 Identities=22% Similarity=0.216 Sum_probs=60.0
Q ss_pred HhCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 290 LENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 290 ~~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.....+.+|++||-.||+ .|.....+++. |+ +|++++.++..++.+++ .|. ...+-.
T Consensus 138 ~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~---------------~~~~d~ 197 (333)
T 1v3u_A 138 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGF---------------DAAFNY 197 (333)
T ss_dssp HTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC---------------SEEEET
T ss_pred HHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC---------------cEEEec
Confidence 345567889999999984 45555555554 88 99999999877766532 232 111111
Q ss_pred c---chhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 367 G---MVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 367 g---d~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
. ++.. +.. ...+.+|+++.+. + . ..+....++|+|||.++.
T Consensus 198 ~~~~~~~~~~~~---~~~~~~d~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~ 242 (333)
T 1v3u_A 198 KTVNSLEEALKK---ASPDGYDCYFDNV-G-----G----EFLNTVLSQMKDFGKIAI 242 (333)
T ss_dssp TSCSCHHHHHHH---HCTTCEEEEEESS-C-----H----HHHHHHHTTEEEEEEEEE
T ss_pred CCHHHHHHHHHH---HhCCCCeEEEECC-C-----h----HHHHHHHHHHhcCCEEEE
Confidence 1 1111 110 1125799999653 2 1 236677799999999873
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.041 Score=55.05 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=52.6
Q ss_pred CEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 299 AVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
.+|+|+.||.|.+++.+.++|. ..|.++|+++.+++.-+.+. +...++.+|+.++...
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~-------------------~~~~~~~~DI~~~~~~- 63 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF-------------------PETNLLNRNIQQLTPQ- 63 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------------------TTSCEECCCGGGCCHH-
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC-------------------CCCceeccccccCCHH-
Confidence 4799999999999999999986 67899999998776555553 2334677888876421
Q ss_pred CCCCCceeEEEecc
Q 010913 377 QIQPHSVDVLVSEW 390 (497)
Q Consensus 377 ~~~~~~fDvIvs~~ 390 (497)
.++...+|+++..+
T Consensus 64 ~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 64 VIKKWNVDTILMSP 77 (333)
T ss_dssp HHHHTTCCEEEECC
T ss_pred HhccCCCCEEEecC
Confidence 12223689999654
|
| >2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.037 Score=42.08 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=44.5
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.+..|-.|++.|.+...+..||+..++- .......|..|+..|.....|..||...
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~------------------------~~~~~~~C~~C~k~f~~~~~L~~H~~~~ 61 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLNWHQRKHAET------------------------VAALRFPCEFCGKRFEKPDSVAAHRSKS 61 (78)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHHH------------------------TTTCCEECTTTCCEESSHHHHHHHHHHT
T ss_pred cCeECCCCCCeeCCHHHHHHHHHHhhcc------------------------CCCcccCCCCCCchhCCHHHHHHHHHHh
Confidence 5789999999999999999999865431 0011135999999999999999999654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.1 Score=51.90 Aligned_cols=95 Identities=22% Similarity=0.213 Sum_probs=60.4
Q ss_pred CCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec--
Q 010913 293 PSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-- 367 (497)
..+.++.+||-+|+ |.|.....+++. |+ +|++++.++..++.+++. |. +. ++..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga--------------~~--~~d~~~ 220 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GA--------------DE--TVNYTH 220 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TC--------------SE--EEETTS
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CC--------------CE--EEcCCc
Confidence 46678999999998 457777777776 88 999999999877776542 32 11 1211
Q ss_pred -ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 368 -MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 -d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++ ..+.. . .....+|+|+... + . ..+....+.|+++|.++.
T Consensus 221 ~~~~~~~~~-~-~~~~~~d~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 221 PDWPKEVRR-L-TGGKGADKVVDHT-G-----A----LYFEGVIKATANGGRIAI 263 (343)
T ss_dssp TTHHHHHHH-H-TTTTCEEEEEESS-C-----S----SSHHHHHHHEEEEEEEEE
T ss_pred ccHHHHHHH-H-hCCCCceEEEECC-C-----H----HHHHHHHHhhccCCEEEE
Confidence 11 11110 0 1234799999653 2 1 134556678999999873
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.11 Score=51.63 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=62.2
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
.....+|.+||-.|+|. |.++..+|++ |+..++++|.++.-++.|++ .|.. ..+.....+.
T Consensus 155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~-------------~~i~~~~~~~ 217 (346)
T 4a2c_A 155 LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM-------------QTFNSSEMSA 217 (346)
T ss_dssp HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS-------------EEEETTTSCH
T ss_pred HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe-------------EEEeCCCCCH
Confidence 34567899999999976 5567777776 88889999999987766654 3431 0111111122
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+....+ .....+|+|+-.. + . ...+....++|+|||.++.
T Consensus 218 ~~~~~~~-~~~~g~d~v~d~~-G----~----~~~~~~~~~~l~~~G~~v~ 258 (346)
T 4a2c_A 218 PQMQSVL-RELRFNQLILETA-G----V----PQTVELAVEIAGPHAQLAL 258 (346)
T ss_dssp HHHHHHH-GGGCSSEEEEECS-C----S----HHHHHHHHHHCCTTCEEEE
T ss_pred HHHHHhh-cccCCcccccccc-c----c----cchhhhhhheecCCeEEEE
Confidence 1111000 1235688888432 1 1 3356666789999999883
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.064 Score=53.37 Aligned_cols=93 Identities=22% Similarity=0.187 Sum_probs=59.7
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---c
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG---M 368 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g---d 368 (497)
.+.+|.+||-+|+|. |.++..+++. |+ +|++++.++.-++.+++ .|. + .++.. +
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa--------------~--~~~d~~~~~ 219 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGA--------------D--LVVNPLKED 219 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTC--------------S--EEECTTTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCC--------------C--EEecCCCcc
Confidence 467899999999964 6677777776 88 99999999987776653 342 1 11111 1
Q ss_pred h-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 V-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 ~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+ ..+.. .. +.+|+|+... + . ...+....++|+++|.++.
T Consensus 220 ~~~~~~~---~~-~~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 259 (339)
T 1rjw_A 220 AAKFMKE---KV-GGVHAAVVTA-V----S----KPAFQSAYNSIRRGGACVL 259 (339)
T ss_dssp HHHHHHH---HH-SSEEEEEESS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHH---Hh-CCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 1 11110 11 4699999542 1 1 2355667789999999873
|
| >2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.058 Score=40.86 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=42.7
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
..+..|-.|++.|.+...+..||+..++- ....|..|+..|.....|..||.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------------~~~~C~~C~~~f~~~~~L~~H~~ 67 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGE---------------------------KPYKCDECGKAFIQRSHLIGHHR 67 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCS---------------------------CSEECSSSCCEESSHHHHHHHGG
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCC---------------------------cCeeCCCCCCccCCHHHHHHHHH
Confidence 35789999999999999999999854320 11359999999999999999985
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.067 Score=53.33 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=63.5
Q ss_pred HHhCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 289 ILENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.....+.+|.+||-+|++ .|.++..++++ |+ +|++++.++.-.+.+++. |. +. ++
T Consensus 151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga--------------~~--v~ 209 (342)
T 4eye_A 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GA--------------DI--VL 209 (342)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TC--------------SE--EE
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CC--------------cE--Ee
Confidence 3356677899999999983 46777777776 88 999999998777766653 32 11 22
Q ss_pred ecchhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
... .++...+ ......+|+|+... +. ..+....++|+|||.++.
T Consensus 210 ~~~-~~~~~~v~~~~~~~g~Dvvid~~-g~---------~~~~~~~~~l~~~G~iv~ 255 (342)
T 4eye_A 210 PLE-EGWAKAVREATGGAGVDMVVDPI-GG---------PAFDDAVRTLASEGRLLV 255 (342)
T ss_dssp ESS-TTHHHHHHHHTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEEE
T ss_pred cCc-hhHHHHHHHHhCCCCceEEEECC-ch---------hHHHHHHHhhcCCCEEEE
Confidence 211 1111000 02234799999643 21 135566789999999883
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.85 E-value=0.071 Score=52.03 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-h
Q 010913 295 LMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-E 370 (497)
Q Consensus 295 ~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-~ 370 (497)
+.+|.+||-+|+ |.|.++..+++. |+ +|++++.++.-.+.+++ .|. + .++...- .
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga--------------~--~~~~~~~~~ 181 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGA--------------E--EAATYAEVP 181 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTC--------------S--EEEEGGGHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC--------------C--EEEECCcch
Confidence 678999999998 346677777776 88 99999998876665543 342 1 1222111 2
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++... + ..+|+|+. . +. ..+....+.|+|+|+++
T Consensus 182 ~~~~~--~--~~~d~vid-~-g~---------~~~~~~~~~l~~~G~~v 215 (302)
T 1iz0_A 182 ERAKA--W--GGLDLVLE-V-RG---------KEVEESLGLLAHGGRLV 215 (302)
T ss_dssp HHHHH--T--TSEEEEEE-C-SC---------TTHHHHHTTEEEEEEEE
T ss_pred hHHHH--h--cCceEEEE-C-CH---------HHHHHHHHhhccCCEEE
Confidence 22111 2 57999995 3 21 13566678999999987
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.29 Score=48.07 Aligned_cols=111 Identities=11% Similarity=0.119 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCHhHHHHH----HcC-CC--EEEEEeCCH---------HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 298 GAVVMDIGCGTGILSLFAA----QAG-AS--RVIAVEASE---------KMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la----~~G-~~--~V~gvD~S~---------~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.-+|||+|=|||...+... +.+ .. +.+++|..+ ...+..........-. ....-.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~---------~~~~v~ 167 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY---------EGERLS 167 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE---------ECSSEE
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc---------cCCcEE
Confidence 4589999999998644322 222 22 457777521 1111222222211000 000114
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhH-HHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESML-SSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l-~~vL~~~~r~LkpgG~li~ 420 (497)
++++.||+.+.-. .++..+||+|+-..++..- .+.+. ..++..+.++++|||+++-
T Consensus 168 L~l~~GDa~~~l~--~l~~~~~Da~flDgFsP~k-NPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 168 LKVLLGDARKRIK--EVENFKADAVFHDAFSPYK-NPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp EEEEESCHHHHGG--GCCSCCEEEEEECCSCTTT-SGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEechHHHHHh--hhcccceeEEEeCCCCccc-CcccCCHHHHHHHHHHhCCCcEEEE
Confidence 5788899977532 1344589999976533221 12232 5799999999999999983
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.12 Score=51.30 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=61.4
Q ss_pred HhCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 290 LENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 290 ~~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.....+.+|.+||-+|++ .|.++..++++ |+ +|++++.++.-++.+++ .|. + .++.
T Consensus 141 ~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga--------------~--~~~~ 199 (334)
T 3qwb_A 141 NEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGA--------------E--YLIN 199 (334)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC--------------S--EEEE
T ss_pred HHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC--------------c--EEEe
Confidence 344567899999999953 36667777776 88 99999999887766554 332 1 1222
Q ss_pred cchhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 367 GMVEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 367 gd~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..-.++...+ ......+|+|+... +. ..+....++|+|||.++.
T Consensus 200 ~~~~~~~~~~~~~~~~~g~D~vid~~-g~---------~~~~~~~~~l~~~G~iv~ 245 (334)
T 3qwb_A 200 ASKEDILRQVLKFTNGKGVDASFDSV-GK---------DTFEISLAALKRKGVFVS 245 (334)
T ss_dssp TTTSCHHHHHHHHTTTSCEEEEEECC-GG---------GGHHHHHHHEEEEEEEEE
T ss_pred CCCchHHHHHHHHhCCCCceEEEECC-Ch---------HHHHHHHHHhccCCEEEE
Confidence 1111110000 01245799999643 21 245556689999999883
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.1 Score=51.97 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=59.5
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
.+ +|.+||-+|+|. |.++..+|++ |+ +|++++.++.-++.+++. |. + .++...-
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga--------------~--~vi~~~~ 225 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GA--------------D--YVSEMKD 225 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TC--------------S--EEECHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CC--------------C--EEecccc
Confidence 45 899999999974 6667777764 77 899999999877777653 32 1 1221111
Q ss_pred -hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 370 -EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 -~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+....+ .....+|+|+-.. + . ...+....++|+|||.++.
T Consensus 226 ~~~~~~~~-~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 267 (344)
T 2h6e_A 226 AESLINKL-TDGLGASIAIDLV-G----T----EETTYNLGKLLAQEGAIIL 267 (344)
T ss_dssp HHHHHHHH-HTTCCEEEEEESS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred chHHHHHh-hcCCCccEEEECC-C----C----hHHHHHHHHHhhcCCEEEE
Confidence 1110001 1234799999542 1 1 2356667789999999873
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.069 Score=53.21 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCC--CEE-EEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGA--SRV-IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~--~~V-~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+|+|+.||.|.+++.+.++|. ..| .|+|+++.+++..+.+.. .. ++.+|+.++..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~------------------~~--~~~~DI~~~~~ 69 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK------------------EE--VQVKNLDSISI 69 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC------------------CC--CBCCCTTTCCH
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC------------------CC--cccCChhhcCH
Confidence 46899999999999999999984 567 799999988877666641 11 45677776641
Q ss_pred ccCCCCCceeEEEecc
Q 010913 375 SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~ 390 (497)
. .++...+|+++..+
T Consensus 70 ~-~i~~~~~Dil~ggp 84 (327)
T 3qv2_A 70 K-QIESLNCNTWFMSP 84 (327)
T ss_dssp H-HHHHTCCCEEEECC
T ss_pred H-HhccCCCCEEEecC
Confidence 1 12223689999754
|
| >1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C | Back alignment and structure |
|---|
Probab=93.74 E-value=0.04 Score=42.79 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=44.4
Q ss_pred Ccceec--CCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHHHHH
Q 010913 46 GFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQNHL 121 (497)
Q Consensus 46 ~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~~Hm 121 (497)
+..|-+ |+..|.+...+..||+..++=. ......=+.-|...-.|..-++..... ..|..|+..|.+...|..||
T Consensus 4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 82 (90)
T 1a1h_A 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82 (90)
T ss_dssp CEECCSSSCCCEESSHHHHHHHHHHHHCCC-CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH
T ss_pred ceECCCCCCCCccCCHHHHHHHHHHhCCCC-CccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHH
Confidence 567774 8888888888888877544311 000001111122222233333332222 34999999999999999998
Q ss_pred HH
Q 010913 122 HE 123 (497)
Q Consensus 122 ~~ 123 (497)
.-
T Consensus 83 ~~ 84 (90)
T 1a1h_A 83 KI 84 (90)
T ss_dssp GG
T ss_pred HH
Confidence 63
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.17 Score=52.57 Aligned_cols=45 Identities=29% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-+|+ | .|.++..+|++ |+ +|++++.++.-++.+++
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~ 271 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA 271 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh
Confidence 56788999999998 4 37778888887 88 89999999887777754
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.14 Score=50.96 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=59.4
Q ss_pred CCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe-c-
Q 010913 293 PSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ-G- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~-g- 367 (497)
..+.+|++||-+|++ .|.....+++. |+ +|++++.++...+.+++ .|. + .++. .
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~--------------~--~~~d~~~ 223 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGG--------------E--VFIDFTK 223 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTC--------------C--EEEETTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCC--------------c--eEEecCc
Confidence 356789999999984 46666666665 88 99999998876665543 332 1 1111 1
Q ss_pred --chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 368 --MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 --d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+.-. ....+.+|+|+... + ....+....+.|+++|.++.
T Consensus 224 ~~~~~~~~~--~~~~~~~D~vi~~~-g--------~~~~~~~~~~~l~~~G~iv~ 267 (347)
T 2hcy_A 224 EKDIVGAVL--KATDGGAHGVINVS-V--------SEAAIEASTRYVRANGTTVL 267 (347)
T ss_dssp CSCHHHHHH--HHHTSCEEEEEECS-S--------CHHHHHHHTTSEEEEEEEEE
T ss_pred cHhHHHHHH--HHhCCCCCEEEECC-C--------cHHHHHHHHHHHhcCCEEEE
Confidence 1111100 00112699999653 1 12466778899999999873
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.11 Score=51.69 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=59.5
Q ss_pred CCCCCCCEEEEEcCCCC--HhHHHHHH-c-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 293 PSLMKGAVVMDIGCGTG--ILSLFAAQ-A-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG--~ls~~la~-~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
..+.++.+||-+|+|.| ..+..+++ . |+ +|+++|.++..++.+++. |. ...+-..+
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~---------------~~~~~~~~ 225 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GA---------------DYVINASM 225 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TC---------------SEEEETTT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CC---------------CEEecCCC
Confidence 45678999999999854 44445554 4 77 899999999877766543 32 11111111
Q ss_pred --h-hhcccccCCCC-CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 --V-EELGESMQIQP-HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 --~-~~l~~~l~~~~-~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
. ..+. .... +.+|+|+... +. ...+....++|+|+|.++.
T Consensus 226 ~~~~~~~~---~~~~~~~~d~vi~~~-g~--------~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 226 QDPLAEIR---RITESKGVDAVIDLN-NS--------EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp SCHHHHHH---HHTTTSCEEEEEESC-CC--------HHHHTTGGGGEEEEEEEEE
T ss_pred ccHHHHHH---HHhcCCCceEEEECC-CC--------HHHHHHHHHHHhcCCEEEE
Confidence 1 0011 0112 4799999643 11 2356677899999999873
|
| >2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.072 Score=43.63 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=50.1
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcC---cchhhhhhhhcCCc--cCceehhhhhHhhc--ccccccccCCccCCHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHC---FDFHSVKTELRLDF--YGSFKLINYIRSQV--AENRCWICGLTCQSNQDL 117 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~---Fd~~~~~~~~~ld~--Y~~iKliNyiR~~~--~~~~c~~C~~~~~~~~~~ 117 (497)
.+..|-.|++.|.+...+..||+. |+ -........=+--| ...-.|..-+|... ....|..|+..|.....|
T Consensus 18 ~~~~C~~C~k~f~~~~~L~~H~~~-~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L 96 (115)
T 2dmi_A 18 SKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDL 96 (115)
T ss_dssp CSEEBSSSSCEESSHHHHHHHHHH-TCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHH
T ss_pred CCEECCccCchhcCHHHHHHHHHH-hCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHH
Confidence 578999999999999999999997 32 11100000001111 12222222222222 223599999999999999
Q ss_pred HHHHHHhcc
Q 010913 118 QNHLHEAYN 126 (497)
Q Consensus 118 ~~Hm~~~~~ 126 (497)
..||....+
T Consensus 97 ~~H~~~hh~ 105 (115)
T 2dmi_A 97 SVHMIKTKH 105 (115)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhCC
Confidence 999987533
|
| >2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.053 Score=44.07 Aligned_cols=78 Identities=12% Similarity=0.180 Sum_probs=49.6
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
.+..| .|++.|.+...+..||+..++--. .....=+--|...-.|..-++..... ..|..|+..|.....|..||.
T Consensus 9 k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 86 (110)
T 2csh_A 9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT 86 (110)
T ss_dssp CCEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred CCEec-cCCCccCCHHHHHHHHHHcCCCcC-ccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHH
Confidence 47899 899999999999999997654211 11111111222233344444433222 249999999999999999997
Q ss_pred Hh
Q 010913 123 EA 124 (497)
Q Consensus 123 ~~ 124 (497)
..
T Consensus 87 ~~ 88 (110)
T 2csh_A 87 SC 88 (110)
T ss_dssp HH
T ss_pred Hc
Confidence 43
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.076 Score=52.73 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCH---HHHHHHHHHHHhCC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASE---KMAAVATQIAKDND 344 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~---~~i~~A~~~~~~~g 344 (497)
.+|..|||.-||+|..+..+.+.|. +.+|+|+++ ..++.|+++++..+
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence 6789999999999999999999987 999999999 99999999876554
|
| >2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.074 Score=42.60 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=43.9
Q ss_pred CCcceecCCCCCC-CHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYS-SCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 45 ~~~~CLFC~~~~~-s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.+..|-.|.+.|. +...+..||+..|+- . ....|..|++.|.....|..||..
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~~-----~---------------------~~~~C~~C~k~F~~~~~L~~H~~~ 76 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKL-----Q---------------------DALKCQHCRKQFKSKAGLNYHTMA 76 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHHHHHHHHHH-----H---------------------HHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred CCcCCCCCCCChhhhHHHHHHHHHHHcCC-----C---------------------CCEECCCCCCccCCHHHHHHHHHH
Confidence 4789999999999 999999999865431 0 012499999999999999999975
Q ss_pred h
Q 010913 124 A 124 (497)
Q Consensus 124 ~ 124 (497)
.
T Consensus 77 h 77 (98)
T 2gqj_A 77 E 77 (98)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.093 Score=43.23 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhh-----cccccccccCCccCCHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQ-----VAENRCWICGLTCQSNQDLQN 119 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~-----~~~~~c~~C~~~~~~~~~~~~ 119 (497)
.+..|-.|+..|.+...+..||+..++-..- ....=+.-|...-.|..-++.. .....|..|+..|.+...|..
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~ 84 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPF-ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRL 84 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHHHHHHHHSSCCSC-BCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHH
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHhCCCCCCe-ECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHH
Confidence 4688999999999999999999876653111 1111112223333344444321 112348889999988888888
Q ss_pred HHHH
Q 010913 120 HLHE 123 (497)
Q Consensus 120 Hm~~ 123 (497)
||..
T Consensus 85 H~~~ 88 (124)
T 2dlq_A 85 HMVS 88 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.06 Score=42.52 Aligned_cols=52 Identities=27% Similarity=0.450 Sum_probs=43.2
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.+-+|-.|++.|.+...+..||+..|+- | ...|..|+++|.....|..||+.
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~-----------------k----------~~~C~~C~k~F~~~~~L~~H~~~ 78 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAA-----------------Q----------VFPCKYCPATFYSSPGLTRHINK 78 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCS-----------------S----------SEECTTSSCEESSHHHHHHHHHT
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCC-----------------C----------ccCCCCCCCEeCCHHHHHHhCcc
Confidence 4578999999999999999999865541 0 12499999999999999999974
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.16 Score=50.01 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=59.4
Q ss_pred hCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|++ .|.....+++. |+ +|++++.++..++.+++. |. ...+-..
T Consensus 134 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~---------------~~~~~~~ 193 (327)
T 1qor_A 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GA---------------WQVINYR 193 (327)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TC---------------SEEEETT
T ss_pred HhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CC---------------CEEEECC
Confidence 35567889999999953 45555556655 88 999999998777766542 22 1111111
Q ss_pred --ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 --MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 --d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+.. ......+|+|+... + ...+....++|++||.++
T Consensus 194 ~~~~~~~~~~--~~~~~~~D~vi~~~-g---------~~~~~~~~~~l~~~G~iv 236 (327)
T 1qor_A 194 EEDLVERLKE--ITGGKKVRVVYDSV-G---------RDTWERSLDCLQRRGLMV 236 (327)
T ss_dssp TSCHHHHHHH--HTTTCCEEEEEECS-C---------GGGHHHHHHTEEEEEEEE
T ss_pred CccHHHHHHH--HhCCCCceEEEECC-c---------hHHHHHHHHHhcCCCEEE
Confidence 11 11110 01234699999653 2 124566678999999987
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.17 Score=50.86 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=60.4
Q ss_pred CCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 293 PSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
..+.+|.+||-+|+ |.|.++..+++. |+ +|++++.++.-++.+++ .|. + .++..+-
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga--------------~--~~~~~~~ 217 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGC--------------D--RPINYKT 217 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC--------------S--EEEETTT
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCC--------------c--EEEecCC
Confidence 45678999999993 457777778776 88 89999999877766654 342 1 1121111
Q ss_pred hhccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++...+ ......+|+|+... + . ..+....++|+++|.++
T Consensus 218 ~~~~~~~~~~~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv 258 (362)
T 2c0c_A 218 EPVGTVLKQEYPEGVDVVYESV-G----G-----AMFDLAVDALATKGRLI 258 (362)
T ss_dssp SCHHHHHHHHCTTCEEEEEECS-C----T-----HHHHHHHHHEEEEEEEE
T ss_pred hhHHHHHHHhcCCCCCEEEECC-C----H-----HHHHHHHHHHhcCCEEE
Confidence 1110000 01235799999642 1 1 35666778999999987
|
| >1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.066 Score=41.13 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=45.7
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.+..|-.|++.|.+...+..||+..|+-... .....|..|+..|.....|..||...
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~-----------------------~~~~~C~~C~~~f~~~~~L~~H~~~h 70 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFV-----------------------PAAFVCSKCGKTFTRRNTMARHADNC 70 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHTTCSSCC-----------------------CCCEECSSSCCEESCHHHHHHHHHHC
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCcCC-----------------------CcceECCCCCChhCCHHHHHHHHHHc
Confidence 4789999999999999999999987753210 01135999999999999999999854
|
| >2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.079 Score=43.70 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=50.1
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhc--CcchhhhhhhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSH--CFDFHSVKTELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQNH 120 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H--~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~~H 120 (497)
.+..|-.|+..|.+...+..|+...| .-.-......=+.-|-..-.|..-+|..... ..|..|+..|.+...|..|
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 113 (124)
T 2dlq_A 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113 (124)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHH
T ss_pred CCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHH
Confidence 46889999999999999999998643 2111111111111122223344444443322 3499999999999999999
Q ss_pred HHHh
Q 010913 121 LHEA 124 (497)
Q Consensus 121 m~~~ 124 (497)
|...
T Consensus 114 ~~~~ 117 (124)
T 2dlq_A 114 MIKL 117 (124)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9854
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.12 Score=51.22 Aligned_cols=97 Identities=20% Similarity=0.154 Sum_probs=60.7
Q ss_pred hCCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-+|+ |.|.....+++. |+ +|++++.++..++.+++ ..|. +. .+-..
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~---~~g~--------------~~-~~d~~ 209 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKT---KFGF--------------DD-AFNYK 209 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TSCC--------------SE-EEETT
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCC--------------ce-EEecC
Confidence 4556788999999998 346666666665 88 89999999876665542 2232 11 11111
Q ss_pred ---chhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 ---MVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 ---d~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.. +.. .....+|+|+... + . ..+....++|+|||.++
T Consensus 210 ~~~~~~~~~~~---~~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~~v 252 (345)
T 2j3h_A 210 EESDLTAALKR---CFPNGIDIYFENV-G-------G--KMLDAVLVNMNMHGRIA 252 (345)
T ss_dssp SCSCSHHHHHH---HCTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEE
T ss_pred CHHHHHHHHHH---HhCCCCcEEEECC-C-------H--HHHHHHHHHHhcCCEEE
Confidence 1111 110 1125799999643 1 1 25677788999999987
|
| >2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.13 Score=44.35 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=50.5
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhh--------hhhhhcCCccCceehhhhhHhhccc--ccccc--cCCcc
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHS--------VKTELRLDFYGSFKLINYIRSQVAE--NRCWI--CGLTC 111 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~--------~~~~~~ld~Y~~iKliNyiR~~~~~--~~c~~--C~~~~ 111 (497)
..+..|-.|++.|.+...+..||+..|.-.-.. ....=+.-|-..-.|..-++..... ..|.. |+..|
T Consensus 23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f 102 (155)
T 2rpc_A 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF 102 (155)
T ss_dssp CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEE
T ss_pred hcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCcc
Confidence 457899999999999999999999888754221 1111122233333344444443222 23776 88888
Q ss_pred CCHHHHHHHHH
Q 010913 112 QSNQDLQNHLH 122 (497)
Q Consensus 112 ~~~~~~~~Hm~ 122 (497)
.+...|..||.
T Consensus 103 ~~~~~L~~H~~ 113 (155)
T 2rpc_A 103 ARSENLKIHKR 113 (155)
T ss_dssp SCHHHHHHHHT
T ss_pred CCHHHHHHHHH
Confidence 88878888875
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.23 Score=48.77 Aligned_cols=93 Identities=23% Similarity=0.262 Sum_probs=58.4
Q ss_pred hCCCCCCCCEEEEEc-CCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIG-CGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvG-CGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-+| +|. |.++..+|++ |+ +|++++. +.-.+.+++ .|. + .++..
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~-~~~~~~~~~----lGa--------------~--~~i~~ 203 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTAS-KRNHAFLKA----LGA--------------E--QCINY 203 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEEC-HHHHHHHHH----HTC--------------S--EEEET
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEec-cchHHHHHH----cCC--------------C--EEEeC
Confidence 445678999999997 554 7788888887 88 8999984 443555543 343 1 12222
Q ss_pred chhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.-.+ +.. ....+|+|+-.. + -. .+....++|+|||+++
T Consensus 204 ~~~~~~~~----~~~g~D~v~d~~-g--------~~-~~~~~~~~l~~~G~iv 242 (321)
T 3tqh_A 204 HEEDFLLA----ISTPVDAVIDLV-G--------GD-VGIQSIDCLKETGCIV 242 (321)
T ss_dssp TTSCHHHH----CCSCEEEEEESS-C--------HH-HHHHHGGGEEEEEEEE
T ss_pred CCcchhhh----hccCCCEEEECC-C--------cH-HHHHHHHhccCCCEEE
Confidence 1111 211 125699999532 1 12 2366789999999988
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.027 Score=56.25 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=59.8
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec--
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-- 367 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-- 367 (497)
...+ +|.+||-+|+|. |.++..+|++ |+.+|++++.++.-++.+++. . +. ++..
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a-----------------~~--v~~~~~ 217 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--A-----------------DR--LVNPLE 217 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--C-----------------SE--EECTTT
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--H-----------------Hh--ccCcCc
Confidence 4566 899999999864 6677777776 877899999998766555432 1 11 1111
Q ss_pred -chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 368 -MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 -d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++. .+.. + . ...+|+|+... + . ...+....+.|+|+|.++.
T Consensus 218 ~~~~~~~~~-~-~-~~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 260 (343)
T 2dq4_A 218 EDLLEVVRR-V-T-GSGVEVLLEFS-G----N----EAAIHQGLMALIPGGEARI 260 (343)
T ss_dssp SCHHHHHHH-H-H-SSCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHH-h-c-CCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 111 1110 0 1 34699999542 1 1 2345667789999999873
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.12 Score=51.85 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=55.8
Q ss_pred CEEEEEcCCC-CHhH-HHHH-Hc-CCCEEEEEeCCHH---HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 299 AVVMDIGCGT-GILS-LFAA-QA-GASRVIAVEASEK---MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 299 ~~VLDvGCGt-G~ls-~~la-~~-G~~~V~gvD~S~~---~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+||-+|+|. |.++ ..+| ++ |+.+|++++.++. -.+.+++ .|. +.+.....++.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa--------------~~v~~~~~~~~~ 235 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA--------------TYVDSRQTPVED 235 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC--------------EEEETTTSCGGG
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC--------------cccCCCccCHHH
Confidence 8999999864 6677 7888 76 8866999999886 5665543 342 111000011111
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. .. .+.+|+|+-.. + . ...+....++|+|||+++
T Consensus 236 i~---~~-~gg~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv 270 (357)
T 2b5w_A 236 VP---DV-YEQMDFIYEAT-G----F----PKHAIQSVQALAPNGVGA 270 (357)
T ss_dssp HH---HH-SCCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEE
T ss_pred HH---Hh-CCCCCEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 11 12 23799998532 1 1 234666778999999987
|
| >2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.1 Score=41.24 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=49.0
Q ss_pred CCCcceec--CCCCCCCHHHHHHHhhhhcCcchhhhh-hhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHH
Q 010913 44 ESGFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVK-TELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQ 118 (497)
Q Consensus 44 ~~~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~-~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~ 118 (497)
..+..|-+ |+..|.+...+..||+..++-..-... ..=+.-|-..-.|..-++..... ..|..|+..|.+...|.
T Consensus 13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 92 (100)
T 2ebt_A 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92 (100)
T ss_dssp CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHH
T ss_pred CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHH
Confidence 35788998 999999999999999875542111100 00111222222333444433222 34888888888888888
Q ss_pred HHHHH
Q 010913 119 NHLHE 123 (497)
Q Consensus 119 ~Hm~~ 123 (497)
.||.-
T Consensus 93 ~H~~~ 97 (100)
T 2ebt_A 93 LHMKR 97 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.15 Score=50.98 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=61.2
Q ss_pred hCCCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-+|+ | .|.++..+++. |+ +|++++.++.-++.+++. |. + .++..
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga--------------~--~~~~~ 219 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GA--------------K--RGINY 219 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TC--------------S--EEEET
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CC--------------C--EEEeC
Confidence 4567789999999954 3 36677777776 88 899999999887777653 32 1 11211
Q ss_pred chhhccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 368 MVEELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 d~~~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.-.++...+ ......+|+|+... +. . .+....+.|+|||.++.
T Consensus 220 ~~~~~~~~~~~~~~~g~Dvvid~~-g~-----~----~~~~~~~~l~~~G~iv~ 263 (353)
T 4dup_A 220 RSEDFAAVIKAETGQGVDIILDMI-GA-----A----YFERNIASLAKDGCLSI 263 (353)
T ss_dssp TTSCHHHHHHHHHSSCEEEEEESC-CG-----G----GHHHHHHTEEEEEEEEE
T ss_pred CchHHHHHHHHHhCCCceEEEECC-CH-----H----HHHHHHHHhccCCEEEE
Confidence 111110000 01145799999653 21 1 34556789999999873
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.17 Score=50.66 Aligned_cols=97 Identities=18% Similarity=0.295 Sum_probs=59.8
Q ss_pred hCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|++ .|.....+++. |+ +|++++.++.-++.+++ .|. + .++..
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga--------------~--~~~d~ 222 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGA--------------H--EVFNH 222 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC--------------S--EEEET
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCC--------------C--EEEeC
Confidence 45567889999999973 35566666665 88 89999999877665543 332 1 11111
Q ss_pred ---ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 368 ---MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 ---d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+. ..+.. ......+|+|+... +. ..+....++|+|||.++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~D~vi~~~-G~---------~~~~~~~~~l~~~G~iv~ 267 (351)
T 1yb5_A 223 REVNYIDKIKK--YVGEKGIDIIIEML-AN---------VNLSKDLSLLSHGGRVIV 267 (351)
T ss_dssp TSTTHHHHHHH--HHCTTCEEEEEESC-HH---------HHHHHHHHHEEEEEEEEE
T ss_pred CCchHHHHHHH--HcCCCCcEEEEECC-Ch---------HHHHHHHHhccCCCEEEE
Confidence 11 11110 01234799999653 21 235566789999999884
|
| >2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A | Back alignment and structure |
|---|
Probab=92.56 E-value=0.074 Score=41.12 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=44.3
Q ss_pred CCcceec--CCCCCCCHHHHHHHhhhhcCcchhhhh-hhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHHH
Q 010913 45 SGFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVK-TELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQN 119 (497)
Q Consensus 45 ~~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~-~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~~ 119 (497)
.+..|-+ |+..|.+...+..||+..++-..-... ..=+.-|...-.|..-++..... ..|..|+..|.+...|..
T Consensus 4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 83 (89)
T 2wbs_A 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 83 (89)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHH
Confidence 4678999 999999999999999865442110000 00111122222233333332222 237777777777777777
Q ss_pred HHH
Q 010913 120 HLH 122 (497)
Q Consensus 120 Hm~ 122 (497)
||.
T Consensus 84 H~~ 86 (89)
T 2wbs_A 84 HMK 86 (89)
T ss_dssp HGG
T ss_pred HHH
Confidence 764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.25 Score=48.45 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=57.1
Q ss_pred EEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 300 VVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 300 ~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+||-+|+ | .|.++..+|++ |+ +|++++.++.-.+.+++. |. +.+ +-..+.....
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga--------------~~v-i~~~~~~~~~--- 205 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GA--------------NRI-LSRDEFAESR--- 205 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TC--------------SEE-EEGGGSSCCC---
T ss_pred eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CC--------------CEE-EecCCHHHHH---
Confidence 3999997 3 47788888887 88 899999999877777653 32 111 1111111111
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+....+|+|+-.. + ...+....++|+|+|+++.
T Consensus 206 ~~~~~~~d~v~d~~-g---------~~~~~~~~~~l~~~G~iv~ 239 (324)
T 3nx4_A 206 PLEKQLWAGAIDTV-G---------DKVLAKVLAQMNYGGCVAA 239 (324)
T ss_dssp SSCCCCEEEEEESS-C---------HHHHHHHHHTEEEEEEEEE
T ss_pred hhcCCCccEEEECC-C---------cHHHHHHHHHHhcCCEEEE
Confidence 23346799988532 1 1266777889999999883
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.31 Score=48.08 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=59.6
Q ss_pred hCCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|+ |.|.....+++. |+ +|++++.++..++.+++. |. .. ++..
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~---------------~~-~~d~ 197 (333)
T 1wly_A 139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GC---------------HH-TINY 197 (333)
T ss_dssp TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TC---------------SE-EEET
T ss_pred HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---------------CE-EEEC
Confidence 3456788999999996 456666666665 88 999999998777666542 32 11 1111
Q ss_pred ---ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 ---MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 ---d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+.. . .....+|+|+... +. ..+....++|+|||.++
T Consensus 198 ~~~~~~~~i~~-~-~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv 241 (333)
T 1wly_A 198 STQDFAEVVRE-I-TGGKGVDVVYDSI-GK---------DTLQKSLDCLRPRGMCA 241 (333)
T ss_dssp TTSCHHHHHHH-H-HTTCCEEEEEECS-CT---------TTHHHHHHTEEEEEEEE
T ss_pred CCHHHHHHHHH-H-hCCCCCeEEEECC-cH---------HHHHHHHHhhccCCEEE
Confidence 11 11110 0 1234699999653 21 23556678999999987
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.47 E-value=0.1 Score=51.13 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=43.0
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEecccccccc-----------------ChhhHHHHHHHHhccccCCcEEeccC
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-----------------YESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-----------------~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++++++||..+... .++.++||+|++++.-.... +...+..++.++.++|||||.+++..
T Consensus 20 ~~~~i~~gD~~~~l~--~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLA--SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHT--TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHh--hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 467899999988531 24678999999997432110 01123567888999999999998654
Q ss_pred c
Q 010913 423 A 423 (497)
Q Consensus 423 ~ 423 (497)
.
T Consensus 98 ~ 98 (297)
T 2zig_A 98 G 98 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.25 Score=49.75 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCCCEEEEEc-CC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIG-CG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvG-CG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
+.+|.+||-+| +| .|.++..+|+. |+ +|++++ ++.-.+.+ +..|. + .++...-.+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~----~~lGa--------------~--~v~~~~~~~ 238 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELV----RKLGA--------------D--DVIDYKSGS 238 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHH----HHTTC--------------S--EEEETTSSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHH----HHcCC--------------C--EEEECCchH
Confidence 67899999999 34 37777777776 87 899998 65544444 33443 1 112111111
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+...+ .....+|+|+-.. +. ....+....++|++||.++.
T Consensus 239 ~~~~~-~~~~g~D~vid~~-g~-------~~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 239 VEEQL-KSLKPFDFILDNV-GG-------STETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp HHHHH-HTSCCBSEEEESS-CT-------THHHHGGGGBCSSSCCEEEE
T ss_pred HHHHH-hhcCCCCEEEECC-CC-------hhhhhHHHHHhhcCCcEEEE
Confidence 10000 0124699998542 11 11244566789999999873
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.38 Score=47.60 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEcCCCC-HhHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh-
Q 010913 294 SLMKGAVVMDIGCGTG-ILSLFAAQ-AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE- 370 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG-~ls~~la~-~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~- 370 (497)
...+|.+||-+|+|.+ .++..+++ +|..+|+++|.++.-++.+++ .|.. ..+..-..+..
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~-------------~~i~~~~~~~~~ 222 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGAD-------------VTINSGDVNPVD 222 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCS-------------EEEEC-CCCHHH
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCe-------------EEEeCCCCCHHH
Confidence 4578999999999874 45555555 466699999999976655543 3421 11222222221
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+.. + .....+|+++-... . ...+....+.|+|+|.++.
T Consensus 223 ~v~~-~-t~g~g~d~~~~~~~-----~----~~~~~~~~~~l~~~G~~v~ 261 (348)
T 4eez_A 223 EIKK-I-TGGLGVQSAIVCAV-----A----RIAFEQAVASLKPMGKMVA 261 (348)
T ss_dssp HHHH-H-TTSSCEEEEEECCS-----C----HHHHHHHHHTEEEEEEEEE
T ss_pred Hhhh-h-cCCCCceEEEEecc-----C----cchhheeheeecCCceEEE
Confidence 1110 0 23445777774321 1 3356667789999999874
|
| >1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.092 Score=40.85 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=37.4
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
+..|-.|+..|.+...+..||+..++- ....|..|+..|.+...|..||..
T Consensus 3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~---------------------------~~~~C~~C~k~f~~~~~L~~H~~~ 53 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLTTHIRTHTGE---------------------------KPFACDICGRKFARSDERKRHRDI 53 (88)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCC---------------------------CCEECTTTCCEESSHHHHHHHHHH
T ss_pred CCcCCCCCCccCCHHHHHHHHHHcCCC---------------------------CCccCCCCCCccCCHHHHHHHHHH
Confidence 678999999999999999999864331 012366777777777777777654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.48 Score=40.44 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=55.4
Q ss_pred CCEEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 298 GAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..+|+-+|||. |. ++..|.+.|. .|+++|.++..++.+++ . .+.++.||..+...-
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~-----------------g~~~i~gd~~~~~~l 64 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----R-----------------GVRAVLGNAANEEIM 64 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T-----------------TCEEEESCTTSHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----c-----------------CCCEEECCCCCHHHH
Confidence 35788899875 43 3444555577 89999999987765543 2 346788887553210
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.......+|+|++.. ... .....+-...+.+.|+..++
T Consensus 65 ~~a~i~~ad~vi~~~-----~~~-~~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 65 QLAHLECAKWLILTI-----PNG-YEAGEIVASARAKNPDIEII 102 (140)
T ss_dssp HHTTGGGCSEEEECC-----SCH-HHHHHHHHHHHHHCSSSEEE
T ss_pred HhcCcccCCEEEEEC-----CCh-HHHHHHHHHHHHHCCCCeEE
Confidence 012235789888532 111 11222333456677887766
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.36 Score=48.21 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=58.7
Q ss_pred hCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|++ .|.....+++. |+ +|++++.++..++.+++. |. ...+-..
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~---------------~~~~~~~ 215 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GA---------------AAGFNYK 215 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TC---------------SEEEETT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CC---------------cEEEecC
Confidence 44567889999999953 35566666665 88 899999999877766432 32 1111111
Q ss_pred --ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 --MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 --d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+.. ......+|+|+... +. . .+....++|++||.++
T Consensus 216 ~~~~~~~~~~--~~~~~~~d~vi~~~-G~-----~----~~~~~~~~l~~~G~iv 258 (354)
T 2j8z_A 216 KEDFSEATLK--FTKGAGVNLILDCI-GG-----S----YWEKNVNCLALDGRWV 258 (354)
T ss_dssp TSCHHHHHHH--HTTTSCEEEEEESS-CG-----G----GHHHHHHHEEEEEEEE
T ss_pred ChHHHHHHHH--HhcCCCceEEEECC-Cc-----h----HHHHHHHhccCCCEEE
Confidence 11 11110 01234799999653 21 1 2455568899999987
|
| >4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.079 Score=38.83 Aligned_cols=51 Identities=27% Similarity=0.580 Sum_probs=41.6
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
-|..|-.|++.|.....+..||+. |. | .....|..||+.|.....|..||.
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~-Ht----------~----------------ekp~~C~~C~k~F~~~~~L~~H~~ 53 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRA-HL----------G----------------YRPRSCPECGKCFRDQSEVNRHLK 53 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHH-HH----------T----------------CCCEECTTTCCEESSHHHHHHHGG
T ss_pred CCccCCCCCCEeCCHHHHHHHHHH-hC----------C----------------CcCeECCCCCCCcCCHHHHHHHhC
Confidence 478999999999999999999974 31 1 011349999999999999999986
|
| >1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=91.95 E-value=0.11 Score=38.73 Aligned_cols=52 Identities=25% Similarity=0.503 Sum_probs=41.8
Q ss_pred CCCcceec--CCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHH
Q 010913 44 ESGFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHL 121 (497)
Q Consensus 44 ~~~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm 121 (497)
..+..|-+ |++.|.+...+..|++..++- ....|..|+..|.....|..||
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~---------------------------~~~~C~~C~~~f~~~~~l~~H~ 69 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQ---------------------------KPFQCRICMRNFSRSDHLTTHI 69 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHHHHHHHHHHCC---------------------------CCEECTTTCCEESCHHHHHHHH
T ss_pred CCccCCcCCCCCCccCCHHHHHHHHHhhCCC---------------------------CCeECCCCCchhCCHHHHHHHH
Confidence 35789986 999999999999999854320 1134999999999999999998
Q ss_pred H
Q 010913 122 H 122 (497)
Q Consensus 122 ~ 122 (497)
.
T Consensus 70 ~ 70 (73)
T 1f2i_G 70 R 70 (73)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.25 Score=49.33 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=59.2
Q ss_pred hCCCCCCC--CEEEEEcCCC--CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 291 ENPSLMKG--AVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 291 ~~~~~~~~--~~VLDvGCGt--G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
....+.+| .+||-.|++. |.....+++. |+++|++++.++.-++.+++. .|. . .++
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~---------------~-~~~ 212 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGF---------------D-AAI 212 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCC---------------S-EEE
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCC---------------c-eEE
Confidence 33456788 9999999843 5555566655 877999999998666555431 332 1 111
Q ss_pred ec---ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 366 QG---MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 366 ~g---d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. ++ ..+. ....+.+|+++... + ...+....++|++||+++
T Consensus 213 d~~~~~~~~~~~---~~~~~~~d~vi~~~-G---------~~~~~~~~~~l~~~G~iv 257 (357)
T 2zb4_A 213 NYKKDNVAEQLR---ESCPAGVDVYFDNV-G---------GNISDTVISQMNENSHII 257 (357)
T ss_dssp ETTTSCHHHHHH---HHCTTCEEEEEESC-C---------HHHHHHHHHTEEEEEEEE
T ss_pred ecCchHHHHHHH---HhcCCCCCEEEECC-C---------HHHHHHHHHHhccCcEEE
Confidence 11 11 1111 01122799999653 2 135667778999999987
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.26 Score=53.94 Aligned_cols=123 Identities=17% Similarity=0.109 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-----------CC--CEEEEEeC---CHHHHHHHH-----------HHHHhCCCCCCC
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-----------GA--SRVIAVEA---SEKMAAVAT-----------QIAKDNDFWWDR 349 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-----------G~--~~V~gvD~---S~~~i~~A~-----------~~~~~~gl~~~~ 349 (497)
+.-+|+|+|.|+|...+.+.++ .. -+++++|. +...+..|- +.+......- .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~ 136 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPL-A 136 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCC-S
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccC-C
Confidence 4569999999999876655442 11 27999999 444443322 2221110000 0
Q ss_pred CCCCC-CCCCCCceEEEecchhhcccccCC-CCCceeEEEeccccccccChhh-HHHHHHHHhccccCCcEEecc
Q 010913 350 PQSEG-NINNAGKMEVVQGMVEELGESMQI-QPHSVDVLVSEWMGYCLLYESM-LSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 350 ~~~~~-~~~~~~~i~~i~gd~~~l~~~l~~-~~~~fDvIvs~~~~~~l~~~~~-l~~vL~~~~r~LkpgG~li~~ 421 (497)
..+.. .....-.++++.||+.+.-..++. ....+|+++...+.... ...+ ...++..+.++++|||.+...
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~ 210 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-NPDMWNEQLFNAMARMTRPGGTFSTF 210 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-ChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 00000 000112678899999876322211 14689999976532111 1122 256888899999999998843
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.73 E-value=0.94 Score=43.22 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCC------------HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEAS------------EKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S------------~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.+|.+ ...++.+...+...+ .
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 71 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG---------------R 71 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT---------------S
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC---------------C
Confidence 568899999998876 4566777798 89999987 555555555555444 4
Q ss_pred ceEEEecchhhcccccCC------CCCceeEEEeccccccc----cChhhHH-----------HHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGMVEELGESMQI------QPHSVDVLVSEWMGYCL----LYESMLS-----------SVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~------~~~~fDvIvs~~~~~~l----~~~~~l~-----------~vL~~~~r~LkpgG~li 419 (497)
++.++.+|+.+...-..+ .-+.+|++|.+. +... .....+. .+++.+...++.+|.++
T Consensus 72 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA-g~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv 150 (287)
T 3pxx_A 72 KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANA-GICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASII 150 (287)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC-CCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEE
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC-CcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEE
Confidence 788999998765310000 013689999764 2111 1122222 23455667777888877
Q ss_pred c
Q 010913 420 P 420 (497)
Q Consensus 420 ~ 420 (497)
.
T Consensus 151 ~ 151 (287)
T 3pxx_A 151 T 151 (287)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.1 Score=52.32 Aligned_cols=94 Identities=22% Similarity=0.249 Sum_probs=57.0
Q ss_pred CCC-CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 294 SLM-KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 294 ~~~-~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
.+. +|.+||-+|+|. |.++..+|++ |+ +|++++.++.-.+.+++ ..|. +.+ +-..+..
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lGa--------------~~v-i~~~~~~ 236 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLGA--------------DDY-VIGSDQA 236 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSCC--------------SCE-EETTCHH
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcCC--------------cee-eccccHH
Confidence 456 899999999874 6677777776 88 89999999865554442 3343 111 1111211
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+. .. .+.+|+|+-.. +. . ..+....++|+|||.++
T Consensus 237 ~~~---~~-~~g~D~vid~~-g~----~----~~~~~~~~~l~~~G~iv 272 (357)
T 2cf5_A 237 KMS---EL-ADSLDYVIDTV-PV----H----HALEPYLSLLKLDGKLI 272 (357)
T ss_dssp HHH---HS-TTTEEEEEECC-CS----C----CCSHHHHTTEEEEEEEE
T ss_pred HHH---Hh-cCCCCEEEECC-CC----h----HHHHHHHHHhccCCEEE
Confidence 121 11 23699999542 11 1 12344567999999987
|
| >2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.35 Score=37.77 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=44.7
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
....|-.|++.|.+...+..||+..|.=.-.. -.|.. .-..|..|+..|.+...|..||.-.
T Consensus 24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~-------~~~~c-----------~~~~C~~C~k~f~~~~~L~~H~~~H 85 (95)
T 2ej4_A 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-------NNHVC-----------YWEECPREGKSFKAKYKLVNHIRVH 85 (95)
T ss_dssp SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTC-------SCCCC-----------CCTTCSSTTCCCSSHHHHHHHHHHH
T ss_pred CCCcccccccccCCHHHHHHHHHHhccCCCCC-------Cccce-----------eccCCCCCCcccCCHHHHHHHHHhc
Confidence 45679999999999999999999766421100 00100 0035999999999999999999853
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.31 Score=53.22 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-----------CC--CEEEEEeC---CHHHHHHHHH-----------HHHhCCCCCCC
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-----------GA--SRVIAVEA---SEKMAAVATQ-----------IAKDNDFWWDR 349 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-----------G~--~~V~gvD~---S~~~i~~A~~-----------~~~~~gl~~~~ 349 (497)
+.-+|||+|-|||...+.+.+. .. -+++++|. +...+..+.. ....... ..
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~ 143 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPM--PL 143 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCC--CC
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcc--cC
Confidence 3469999999999865554332 11 26899999 7766653332 2211100 00
Q ss_pred CCC-CC-CCCCCCceEEEecchhhcccccCCC-CCceeEEEeccccccccChhh-HHHHHHHHhccccCCcEEecc
Q 010913 350 PQS-EG-NINNAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYESM-LSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 350 ~~~-~~-~~~~~~~i~~i~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l~~~~~-l~~vL~~~~r~LkpgG~li~~ 421 (497)
.-. .. .....-.++++.||+.+.-..+... ...||+|+...+.... ...+ -..++..+.++++|||.+...
T Consensus 144 ~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 144 PGCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp SEEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred CCceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-ChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 000 00 0001135678889987763222111 4679999976533221 1222 257889999999999998843
|
| >1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.18 Score=40.71 Aligned_cols=76 Identities=22% Similarity=0.185 Sum_probs=47.9
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhh-cccccccccCCccCCHHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQ-VAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~-~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.+..|-.|.+.|.+...+..||+. |. -......=+.-|...-.|..-++.. .....|..|+..|.+...|..||..
T Consensus 15 ~~~~C~~C~~~f~~~~~l~~H~~~-H~--~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~ 91 (107)
T 1wjp_A 15 EVYQCRLCNAKLSSLLEQGSHERL-CR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91 (107)
T ss_dssp CCCBCTTTCCBCSSHHHHHHHHHH-HH--HSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHHHHHHHHHH
T ss_pred cCeECCCCCCccCCHHHHHHHHHH-CC--CCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCHHHHHHHHHH
Confidence 478999999999999999999986 41 0001111122222222333333311 1123499999999999999999973
|
| >2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A | Back alignment and structure |
|---|
Probab=91.62 E-value=0.074 Score=33.33 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=24.7
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCc
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCF 72 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~F 72 (497)
.-.|-||.+.++++..++.|.++.|..
T Consensus 9 kqhcrfckkkysdvknlikhire~hd~ 35 (37)
T 2elu_A 9 KQHCRFCKKKYSDVKNLIKHIRDAHDP 35 (37)
T ss_dssp CCEETTTTEECSSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457999999999999999999999974
|
| >2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.077 Score=45.47 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=52.0
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcc--cccccccCCccCCHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVA--ENRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~--~~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
-+..|-.|++.|.+...+..||+. |.=.-+.....=+--|...-.|..-+|.-.. ...|..||..|.+...|..||.
T Consensus 21 k~y~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~ 99 (133)
T 2lt7_A 21 VYYICIVCKRSYVCLTSLRRHFNI-HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99 (133)
T ss_dssp EEEEETTTCCEESCHHHHHHHHHH-HHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHH
T ss_pred cCeECCCCCCCcCCHHHHHHHHHH-cCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhH
Confidence 468999999999999999999985 5211111111112223344445555554322 2349999999999999999998
Q ss_pred Hh
Q 010913 123 EA 124 (497)
Q Consensus 123 ~~ 124 (497)
..
T Consensus 100 ~h 101 (133)
T 2lt7_A 100 SV 101 (133)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=91.29 E-value=0.22 Score=52.15 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.-+|+|+-||.|.+++.+.++|...|.++|+++.+++.-+.+... .+...++.+|+.++.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~----------------~p~~~~~~~DI~~i~ 147 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC----------------DPATHHFNEDIRDIT 147 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC----------------CTTTCEEESCTHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc----------------CCCcceeccchhhhh
Confidence 468999999999999999999997899999999776655444211 023456778888764
|
| >2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=91.11 E-value=0.21 Score=37.63 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=43.5
Q ss_pred CCcceec--CCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccc--cCCccCCHHHHHHH
Q 010913 45 SGFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWI--CGLTCQSNQDLQNH 120 (497)
Q Consensus 45 ~~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~--C~~~~~~~~~~~~H 120 (497)
.+..|-+ |++.|.+...+..||+..|.= .....|.. |+..|.+...|..|
T Consensus 6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~--------------------------~~~~~C~~~~C~k~f~~~~~L~~H 59 (79)
T 2dlk_A 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIH--------------------------QKSFSCPEPACGKSFNFKKHLKEH 59 (79)
T ss_dssp SSEECSSTTTCCEESSHHHHHHHHHHGGGS--------------------------CCCEECSCTTTCCEESSHHHHHHH
T ss_pred CCccCCCCCCcCccCCHHHHHHHHHHHhCC--------------------------CCCeECCCCCCcCccCCHHHHHHH
Confidence 4688998 999999999999999866631 01124888 99999999999999
Q ss_pred HHHh
Q 010913 121 LHEA 124 (497)
Q Consensus 121 m~~~ 124 (497)
|.-.
T Consensus 60 ~~~H 63 (79)
T 2dlk_A 60 MKLH 63 (79)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9843
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.29 Score=49.04 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=54.6
Q ss_pred CCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCH---HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 298 GAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASE---KMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 298 ~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~---~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
|.+||-+|+|. |.++..+++. |+ +|++++.++ .-++.+++. |. ..+..+ ++
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~----ga-----------------~~v~~~--~~ 236 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET----KT-----------------NYYNSS--NG 236 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH----TC-----------------EEEECT--TC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh----CC-----------------ceechH--HH
Confidence 89999999853 5556666665 88 999999987 666665543 32 111111 11
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHH-HHHhccccCCcEEec
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL-FARDQWLKPGGAILP 420 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL-~~~~r~LkpgG~li~ 420 (497)
...+.-....+|+|+... + .. ..+ ....+.|+|+|.++.
T Consensus 237 ~~~~~~~~~~~d~vid~~-g----~~----~~~~~~~~~~l~~~G~iv~ 276 (366)
T 2cdc_A 237 YDKLKDSVGKFDVIIDAT-G----AD----VNILGNVIPLLGRNGVLGL 276 (366)
T ss_dssp SHHHHHHHCCEEEEEECC-C----CC----THHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHhCCCCCEEEECC-C----Ch----HHHHHHHHHHHhcCCEEEE
Confidence 100000014699999643 1 11 134 667889999999873
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.14 Score=51.60 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=32.7
Q ss_pred CCC-CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLM-KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~-~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.+. +|.+||-+|+|. |.++..+|++ |+ +|++++.++.-++.++
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~ 228 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEAL 228 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHH
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 455 899999999864 6666777776 88 8999999986655444
|
| >1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C | Back alignment and structure |
|---|
Probab=90.93 E-value=0.17 Score=39.13 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.4
Q ss_pred cccccCCccCCHHHHHHHHHHh
Q 010913 103 RCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.|..|+..|.+...|..||...
T Consensus 36 ~C~~C~~~f~~~~~l~~H~~~h 57 (90)
T 1a1h_A 36 QCRICMRNFSRSDHLTTHIRTH 57 (90)
T ss_dssp ECTTTCCEESCHHHHHHHHHHH
T ss_pred cCCCCCcccCCHHHHHHHHHHc
Confidence 5999999999999999999843
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.87 Score=43.04 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCC--CCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 296 MKGAVVMDIGCG--TGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 296 ~~~~~VLDvGCG--tG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+++||-.|++ .|+ ++..+++.|+ +|+.++.++...+.+.+.....+ ..++.++.+|+.
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~ 69 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLD--------------RNDSIILPCDVT 69 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSS--------------SCCCEEEECCCS
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcC--------------CCCceEEeCCCC
Confidence 468899999987 565 5667777798 89999998766665555554433 136889999887
Q ss_pred hcccccCC------CCCceeEEEecccccc-------c--cChhhHH-----------HHHHHHhccccCCcEEe
Q 010913 371 ELGESMQI------QPHSVDVLVSEWMGYC-------L--LYESMLS-----------SVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~------~~~~fDvIvs~~~~~~-------l--~~~~~l~-----------~vL~~~~r~LkpgG~li 419 (497)
+...-..+ ..+.+|++|.+.-... + .....+. .+++.+...++++|.++
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv 144 (266)
T 3oig_A 70 NDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIV 144 (266)
T ss_dssp SSHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEE
T ss_pred CHHHHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEE
Confidence 64310000 0136899887531100 0 1111121 24556677788888877
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=0.36 Score=47.49 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=58.2
Q ss_pred CCCCCC-EEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 294 SLMKGA-VVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 294 ~~~~~~-~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
.+.+|. +||-+|+ | .|.++..+|++ |+ +|++++.++.-++.+++. |. +. ++..+-
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga--------------~~--v~~~~~ 204 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GA--------------SE--VISRED 204 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TC--------------SE--EEEHHH
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC--------------cE--EEECCC
Confidence 456675 8999998 3 46677777776 88 799999987766666542 32 11 121111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+......+....+|+|+-.. + . ..+....++|+|||+++.
T Consensus 205 ~~~~~~~~~~~~~~d~vid~~-g----~-----~~~~~~~~~l~~~G~iv~ 245 (330)
T 1tt7_A 205 VYDGTLKALSKQQWQGAVDPV-G----G-----KQLASLLSKIQYGGSVAV 245 (330)
T ss_dssp HCSSCCCSSCCCCEEEEEESC-C----T-----HHHHHHHTTEEEEEEEEE
T ss_pred chHHHHHHhhcCCccEEEECC-c----H-----HHHHHHHHhhcCCCEEEE
Confidence 000000012235799998542 1 1 246667789999999873
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=90.50 E-value=0.47 Score=48.96 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=35.2
Q ss_pred CCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-+|+ | .|.++..++++ |+ +|++++.++.-++.+++
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~ 263 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA 263 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence 56789999999998 3 36677777776 87 89999999887766643
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.32 Score=48.33 Aligned_cols=96 Identities=22% Similarity=0.243 Sum_probs=60.7
Q ss_pred hCCCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-+|+ | .|.++..++++ |+ +|+++ .++.-++.+++. |. .. +.
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l----Ga---------------~~--i~- 199 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL----GA---------------TP--ID- 199 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH----TS---------------EE--EE-
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc----CC---------------CE--ec-
Confidence 5567789999999995 3 36777777777 88 89999 888777666543 32 11 22
Q ss_pred chhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 368 MVEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 d~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.-.++...+ ......+|+|+-.. + . ..+....++|+|+|.++.
T Consensus 200 ~~~~~~~~~~~~~~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 200 ASREPEDYAAEHTAGQGFDLVYDTL-G----G-----PVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp TTSCHHHHHHHHHTTSCEEEEEESS-C----T-----HHHHHHHHHEEEEEEEEE
T ss_pred cCCCHHHHHHHHhcCCCceEEEECC-C----c-----HHHHHHHHHHhcCCeEEE
Confidence 111111000 01235799999542 1 1 255666789999999883
|
| >2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.33 Score=39.53 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=50.1
Q ss_pred CCcceec--CCCCCCCHHHHHHHhhhhcCcchhhhh-hhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHHH
Q 010913 45 SGFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVK-TELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQN 119 (497)
Q Consensus 45 ~~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~-~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~~ 119 (497)
.+..|-+ |+..|.+...+..||+..++-..-... ..=+.-|-..-.|..-++..... ..|..|+..|.+...|..
T Consensus 5 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 84 (119)
T 2jp9_A 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84 (119)
T ss_dssp CCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHH
T ss_pred eeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHH
Confidence 4688998 999999999999999865542110000 00111222233344444443322 349999999999999999
Q ss_pred HHHHh
Q 010913 120 HLHEA 124 (497)
Q Consensus 120 Hm~~~ 124 (497)
||...
T Consensus 85 H~~~h 89 (119)
T 2jp9_A 85 HTRTH 89 (119)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98743
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.87 E-value=0.25 Score=48.96 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=44.2
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccc-----------cChhhHHHHHHHHhccccCCcEEeccC
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL-----------LYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l-----------~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
....+++||..+.-. .++.++||+|++.+.-... .+...+..++.++.++|+|||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~--~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLE--SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGG--GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHh--hCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 467899999876422 2567899999998642211 012357788999999999999998643
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.69 E-value=2.6 Score=42.40 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
.+.+||.|+.+.|.++..++.. .++.+.=|-......+.++..|++.. ..+++... +
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~------------~~~~~~~~----~---- 94 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDE------------SSVKFLDS----T---- 94 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCG------------GGSEEEET----T----
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCc------------cceEeccc----c----
Confidence 5578999999999999988755 34555446666666778888998831 34665432 1
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.-.+..+|+|+.-+ -.....+...|..+...|+||+.++
T Consensus 95 ~~~~~~~~~v~~~l----pk~~~~l~~~L~~l~~~l~~~~~i~ 133 (375)
T 4dcm_A 95 ADYPQQPGVVLIKV----PKTLALLEQQLRALRKVVTSDTRII 133 (375)
T ss_dssp SCCCSSCSEEEEEC----CSCHHHHHHHHHHHHTTCCTTSEEE
T ss_pred cccccCCCEEEEEc----CCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 12356799998432 1234567788899999999999987
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=89.64 E-value=1.1 Score=42.80 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|--|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.++..| .++.++++|+.+.
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g---------------~~~~~~~~Dvt~~ 68 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG---------------KEVLGVKADVSKK 68 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEccCCCH
Confidence 478999999999987 5667788898 89999999988887777777665 3788899998765
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- ..-.-++.|++|.+.
T Consensus 69 ~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 69 KDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310 000125799999864
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=89.64 E-value=0.66 Score=46.29 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=29.3
Q ss_pred hCCCCCCC-CEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCH
Q 010913 291 ENPSLMKG-AVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASE 330 (497)
Q Consensus 291 ~~~~~~~~-~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~ 330 (497)
....+.+| .+||-+|+ | .|.++..+|+. |+ +|+++..+.
T Consensus 160 ~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~ 202 (364)
T 1gu7_A 160 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDR 202 (364)
T ss_dssp SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCC
T ss_pred HhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCc
Confidence 33467789 99999997 3 47778888887 88 788886544
|
| >2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=89.37 E-value=0.41 Score=38.21 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=41.5
Q ss_pred CCcceecCCCCC-CCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHH-HH
Q 010913 45 SGFLCLFCDAGY-SSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNH-LH 122 (497)
Q Consensus 45 ~~~~CLFC~~~~-~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~H-m~ 122 (497)
.+..|-.|++.| .+...+..||+.. += ....|-.|++.|.....|..| |.
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~h-~~---------------------------k~~~C~~Cgk~F~~~~~L~~H~~~ 84 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQ---------------------------EMFTCHHCGKQLRSLAGMKYHVMA 84 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHHH-CC---------------------------CCCCCSSSCCCCSSHHHHHHHHHH
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHHH-CC---------------------------CCeECCCCCCeeCCHHHHHHHhHH
Confidence 468999999999 9999999999853 21 012599999999999999999 65
Q ss_pred H
Q 010913 123 E 123 (497)
Q Consensus 123 ~ 123 (497)
-
T Consensus 85 ~ 85 (96)
T 2ctd_A 85 N 85 (96)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.12 E-value=0.29 Score=48.12 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=56.8
Q ss_pred CCCCCCC-EEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 293 PSLMKGA-VVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 293 ~~~~~~~-~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
..+.+|. +||-+|+ |.|.++..+|++ |+ +|++++.++.-++.+++ .|. +.+ +-..+
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa--------------~~~-i~~~~ 203 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGA--------------KEV-LARED 203 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTC--------------SEE-EECC-
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCC--------------cEE-EecCC
Confidence 3456675 8999997 346777778876 88 79999999766665543 343 111 11111
Q ss_pred h--hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 V--EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 ~--~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
. ..+. ......+|+|+-.. + . . .+....++|+|||+++.
T Consensus 204 ~~~~~~~---~~~~~~~d~vid~~-g----~-~----~~~~~~~~l~~~G~~v~ 244 (328)
T 1xa0_A 204 VMAERIR---PLDKQRWAAAVDPV-G----G-R----TLATVLSRMRYGGAVAV 244 (328)
T ss_dssp -----------CCSCCEEEEEECS-T----T-T----THHHHHHTEEEEEEEEE
T ss_pred cHHHHHH---HhcCCcccEEEECC-c----H-H----HHHHHHHhhccCCEEEE
Confidence 1 1111 12234799998542 1 1 1 34556788999999873
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=88.82 E-value=1.2 Score=39.56 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCC-CH-hHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 297 KGAVVMDIGCGT-GI-LSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~-ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+.+|+-+|||. |. ++..|.+. |. .|+++|.++..++.++ ..| +.++.+|..+..
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~----~~g-----------------~~~~~gd~~~~~ 95 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHR----SEG-----------------RNVISGDATDPD 95 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHH----HTT-----------------CCEEECCTTCHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHH----HCC-----------------CCEEEcCCCCHH
Confidence 466889999875 33 34455566 77 8999999997665443 233 345666654321
Q ss_pred cccCC-CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQI-QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~-~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.-... ....+|+|+... ........++ ...+.+.|++.++
T Consensus 96 ~l~~~~~~~~ad~vi~~~-----~~~~~~~~~~-~~~~~~~~~~~ii 136 (183)
T 3c85_A 96 FWERILDTGHVKLVLLAM-----PHHQGNQTAL-EQLQRRNYKGQIA 136 (183)
T ss_dssp HHHTBCSCCCCCEEEECC-----SSHHHHHHHH-HHHHHTTCCSEEE
T ss_pred HHHhccCCCCCCEEEEeC-----CChHHHHHHH-HHHHHHCCCCEEE
Confidence 00012 235689988532 1122222222 3445566777766
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.82 Score=42.97 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCCH---hHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 297 KGAVVMDIGCGTGI---LSLFAAQ-AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 297 ~~~~VLDvGCGtG~---ls~~la~-~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++++||-.|++.|+ ++..|++ .|+ +|++++.++.....+.+.+...+ .++.++.+|+.+.
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~Dl~~~ 66 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG---------------LSPRFHQLDIDDL 66 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT---------------CCCEEEECCTTCH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC---------------CeeEEEECCCCCH
Confidence 56889988866554 3445666 687 89999999876665555554443 3678888888764
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ ..+.+|+||.+.
T Consensus 67 ~~~~~~~~~~~~~~g~id~li~~A 90 (276)
T 1wma_A 67 QSIRALRDFLRKEYGGLDVLVNNA 90 (276)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 310000 013689999753
|
| >1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A | Back alignment and structure |
|---|
Probab=88.63 E-value=0.059 Score=41.97 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.+..|-.|+..|.+...+..|++..|+. .| .|..|+..|.+...|..||...
T Consensus 30 ~~~~C~~C~k~f~~~~~L~~H~~~h~~~--------------------~~--------~c~~C~~~f~~~~~L~~H~~~~ 81 (88)
T 1llm_C 30 KPFACDICGRKFARSDERKRHRDIQHIL--------------------PI--------LEDKVEELLSKNYHLENEVARL 81 (88)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHTHH--------------------HH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCccCCHHHHHHHHHHhCCC--------------------cc--------hHHHHHHHHHHHhhhHHHHHHH
Confidence 4689999999999999999999988731 01 3888999999999999999976
Q ss_pred cc
Q 010913 125 YN 126 (497)
Q Consensus 125 ~~ 126 (497)
..
T Consensus 82 h~ 83 (88)
T 1llm_C 82 KK 83 (88)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.56 E-value=1.6 Score=36.88 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCEEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 298 GAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++|+-+|||. |. ++..|++.|. .|+++|.++..++.+++ . .+.++.+|+.+...-
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~----~-----------------~~~~~~gd~~~~~~l 63 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLED----E-----------------GFDAVIADPTDESFY 63 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T-----------------TCEEEECCTTCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----C-----------------CCcEEECCCCCHHHH
Confidence 45789999865 22 3444555587 89999999977655442 2 346778887653210
Q ss_pred cCCCCCceeEEEec
Q 010913 376 MQIQPHSVDVLVSE 389 (497)
Q Consensus 376 l~~~~~~fDvIvs~ 389 (497)
.......+|+|+..
T Consensus 64 ~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 64 RSLDLEGVSAVLIT 77 (141)
T ss_dssp HHSCCTTCSEEEEC
T ss_pred HhCCcccCCEEEEe
Confidence 01234578998854
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=0.41 Score=48.44 Aligned_cols=42 Identities=26% Similarity=0.257 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQ-AGASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~-~G~~~V~gvD~S~~~i~~A~~ 338 (497)
.+|++|+-+|+|. |......++ .|+ +|+++|.++.-++.+.+
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDA 209 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHH
Confidence 4689999999864 433333333 388 89999999876665554
|
| >2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} | Back alignment and structure |
|---|
Probab=88.46 E-value=0.38 Score=40.04 Aligned_cols=51 Identities=25% Similarity=0.474 Sum_probs=38.2
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.+..|-.|++.|.+...+..||+. | . ....|..|+..|.....|..||...
T Consensus 73 ~~~~C~~C~k~f~~~~~l~~H~~~-H----~------------------------~~~~C~~C~k~f~~~~~l~~H~~~h 123 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSLKQHIRY-T----E------------------------HTKVCPVCKKEFTSTDSALDHVCKK 123 (129)
T ss_dssp CSEECTTTCCEESSHHHHHHHHHH-T----C------------------------CCCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred CCeECCCCCcccCCHhHHHHHHHH-C----C------------------------CCCCCCCCCcccCCHHHHHHHHHHH
Confidence 356777777777777777777764 4 0 1125999999999999999999854
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=0.86 Score=51.87 Aligned_cols=75 Identities=23% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc-
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE- 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~- 374 (497)
+..+++|+-||.|.+++.+.++|. ..|.|+|+++.+++.-+.+. +...++.+|+.++..
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-------------------p~~~~~~~DI~~l~~~ 599 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-------------------PGSTVFTEDCNILLKL 599 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-------------------TTSEEECSCHHHHHHH
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-------------------CCCccccccHHHHhhh
Confidence 446899999999999999999997 67889999998776544442 245667777654310
Q ss_pred --------c--cCC-CCCceeEEEecc
Q 010913 375 --------S--MQI-QPHSVDVLVSEW 390 (497)
Q Consensus 375 --------~--l~~-~~~~fDvIvs~~ 390 (497)
. ..+ ..+.+|+|+..+
T Consensus 600 ~~~~di~~~~~~~lp~~~~vDll~GGp 626 (1002)
T 3swr_A 600 VMAGETTNSRGQRLPQKGDVEMLCGGP 626 (1002)
T ss_dssp HHHTCSBCTTCCBCCCTTTCSEEEECC
T ss_pred ccchhhhhhhhhhcccCCCeeEEEEcC
Confidence 0 012 235799999754
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.20 E-value=2.7 Score=34.82 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCEEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 298 GAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+.+|+-+|+|. |. ++..+++.|. .|+++|.++..++.+.+ .. .+.++.++..+....
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~---~~-----------------~~~~~~~d~~~~~~l 62 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASA---EI-----------------DALVINGDCTKIKTL 62 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HC-----------------SSEEEESCTTSHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHH---hc-----------------CcEEEEcCCCCHHHH
Confidence 45788888854 22 2334445576 89999999876543332 12 235566665432100
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
.......+|+|+.... . ......+..+.+.++++-++
T Consensus 63 ~~~~~~~~d~vi~~~~-----~-~~~~~~~~~~~~~~~~~~ii 99 (140)
T 1lss_A 63 EDAGIEDADMYIAVTG-----K-EEVNLMSSLLAKSYGINKTI 99 (140)
T ss_dssp HHTTTTTCSEEEECCS-----C-HHHHHHHHHHHHHTTCCCEE
T ss_pred HHcCcccCCEEEEeeC-----C-chHHHHHHHHHHHcCCCEEE
Confidence 0112346899886421 1 12223344445557775433
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=88.15 E-value=0.47 Score=47.67 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
++++||-+|+|. |.....+++. |+ +|+++|.++.-++.+.+.
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~ 209 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETL 209 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHh
Confidence 458999999964 4444444444 88 999999998777666554
|
| >1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=0.4 Score=39.41 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=39.7
Q ss_pred CCccee--cCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc--ccccc--cCCccCCHHHHH
Q 010913 45 SGFLCL--FCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE--NRCWI--CGLTCQSNQDLQ 118 (497)
Q Consensus 45 ~~~~CL--FC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~--~~c~~--C~~~~~~~~~~~ 118 (497)
.+..|- .|+..|.+...+..||+ .|+-.. .....=+.-|-..-.|..-++..... ..|.. |+..|.+...|.
T Consensus 4 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~ 81 (124)
T 1ubd_C 4 RTIACPHKGCTKMFRDNSAMRKHLH-THGPRV-HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81 (124)
T ss_dssp -CEECCSTTCCCEESSHHHHHHHHG-GGSCCC-EECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred CcccCCCCCCcCccCCHHHHHHHHH-HcCCCC-eECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence 356676 67777777777777776 342110 00001111122222233333322211 23765 888888888888
Q ss_pred HHHHH
Q 010913 119 NHLHE 123 (497)
Q Consensus 119 ~Hm~~ 123 (497)
.||..
T Consensus 82 ~H~~~ 86 (124)
T 1ubd_C 82 THVRI 86 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=87.76 E-value=1.8 Score=42.57 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=56.9
Q ss_pred CCEEEEEcCCC-C-HhHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh-cc
Q 010913 298 GAVVMDIGCGT-G-ILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE-LG 373 (497)
Q Consensus 298 ~~~VLDvGCGt-G-~ls~~la~~G~~-~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~-l~ 373 (497)
..+|.-||+|. | .++..+++.|.. .|+++|.++..++.+.+ .|. +.-...+..+ .
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~----------------~~~~~~~~~~~~- 91 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGI----------------IDEGTTSIAKVE- 91 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTS----------------CSEEESCTTGGG-
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCC----------------cchhcCCHHHHh-
Confidence 36899999886 3 356666667763 89999999977665542 343 1112223332 1
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
....|+|+... .......++..+...|+||.+++
T Consensus 92 ------~~~aDvVilav------p~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 92 ------DFSPDFVMLSS------PVRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp ------GGCCSEEEECS------CGGGHHHHHHHHHHHSCTTCEEE
T ss_pred ------hccCCEEEEeC------CHHHHHHHHHHHhhccCCCcEEE
Confidence 23579988532 23345678888888899987765
|
| >2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 | Back alignment and structure |
|---|
Probab=87.70 E-value=0.44 Score=33.19 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=24.5
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcC
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
..+..|-.|++.|.....+..||+..|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~ 37 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVHT 37 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhcC
Confidence 3578999999999999999999986664
|
| >2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=87.36 E-value=0.33 Score=39.52 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=42.5
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHL 121 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm 121 (497)
..|..|-.|++.|.+...+..||+..|.-.. + ...-.|-.||..|.....|..||
T Consensus 16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~-------~----------------ekpf~C~~Cgk~F~~~~~L~~H~ 70 (102)
T 2ghf_A 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVV-------L----------------NSSYVCVECNFLTKRYDALSEHN 70 (102)
T ss_dssp CSSEECSSCSCEESCHHHHHHHHHHHCSSCC-------C----------------SCCEEETTTTEEESSTHHHHTHH
T ss_pred CcCcCCCCCCCccCCHHHHHHHHHhhCCCCC-------C----------------CCCcCCCCCCcccCCHHHHHHHH
Confidence 3578999999999999999999987662100 0 01124999999999999999994
|
| >2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A | Back alignment and structure |
|---|
Probab=87.32 E-value=0.29 Score=37.09 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=16.7
Q ss_pred cce--ecCCCCCCCHHHHHHHhhhhc
Q 010913 47 FLC--LFCDAGYSSCDTLFEHCRLSH 70 (497)
Q Consensus 47 ~~C--LFC~~~~~s~~~~l~Hm~~~H 70 (497)
..| -.|++.|.+...+..||+..+
T Consensus 2 ~~C~~~~C~~~f~~~~~l~~H~~~h~ 27 (85)
T 2j7j_A 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27 (85)
T ss_dssp EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHhC
Confidence 456 667777777777777776543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.20 E-value=2.6 Score=39.79 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~Dv~~ 71 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG---------------RRALSVGTDITD 71 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTC
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEEcCCCC
Confidence 3578999999999886 4667777798 89999999887776666665554 478899999876
Q ss_pred cccc------cCCCCCceeEEEecc
Q 010913 372 LGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~------l~~~~~~fDvIvs~~ 390 (497)
...- +.-.-+.+|++|.+.
T Consensus 72 ~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 72 DAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEECC
Confidence 5310 000124689999764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.02 E-value=0.82 Score=46.00 Aligned_cols=98 Identities=18% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCC-CHhHHH-HHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGT-GILSLF-AAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~-la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++++|+-+|+|. |..... ++..|+ +|+++|.++..++.+.+. .+. .+.....+..++.
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~---~g~---------------~~~~~~~~~~~l~ 224 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDV---FGG---------------RVITLTATEANIK 224 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---TTT---------------SEEEEECCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh---cCc---------------eEEEecCCHHHHH
Confidence 4568999999853 333332 333488 999999998766554432 221 2333222222322
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. -..+|+|+..... .....+.-+.....+.+||||.++
T Consensus 225 ~~----~~~~DvVi~~~g~---~~~~~~~li~~~~l~~mk~gg~iV 263 (369)
T 2eez_A 225 KS----VQHADLLIGAVLV---PGAKAPKLVTRDMLSLMKEGAVIV 263 (369)
T ss_dssp HH----HHHCSEEEECCC----------CCSCHHHHTTSCTTCEEE
T ss_pred HH----HhCCCEEEECCCC---CccccchhHHHHHHHhhcCCCEEE
Confidence 11 1368999865311 100011112345567789999887
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.02 E-value=1.6 Score=41.84 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+...++.+.+.+...+ .++.++.+|+.+.
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~Dv~d~ 89 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG---------------GQAIALEADVSDE 89 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEEccCCCH
Confidence 568899999988876 4556777798 99999999877766655554433 4788899998764
Q ss_pred ccccC------CCCCceeEEEecc
Q 010913 373 GESMQ------IQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~------~~~~~fDvIvs~~ 390 (497)
..-.. -.-+.+|++|.+.
T Consensus 90 ~~v~~~~~~~~~~~g~iD~lVnnA 113 (283)
T 3v8b_A 90 LQMRNAVRDLVLKFGHLDIVVANA 113 (283)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 31000 0114689999764
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* | Back alignment and structure |
|---|
Probab=86.99 E-value=0.33 Score=43.43 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=42.4
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
.+..|-.|+..|.+...+..||+..|+-..-. ...=+.-|...-.|..-++..... ..|..|+..|.+...|..||.
T Consensus 76 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~ 154 (190)
T 2i13_A 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYA-CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154 (190)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHTCCCEE-CTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH
T ss_pred CCccCcccCCccCCHHHHHHHHHhcCCCCCCc-CCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHH
Confidence 35678888888888888888877655421100 001111122222233334333222 237777777777777777776
Q ss_pred H
Q 010913 123 E 123 (497)
Q Consensus 123 ~ 123 (497)
.
T Consensus 155 ~ 155 (190)
T 2i13_A 155 T 155 (190)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* | Back alignment and structure |
|---|
Probab=86.92 E-value=0.36 Score=43.14 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=52.2
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc--ccccccCCccCCHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE--NRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~--~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
.+..|-.|+..|.+...+..||+..|+-..- ....=+.-|-..-.|..-++..... ..|..|+..|.+...|..||.
T Consensus 48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~-~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 126 (190)
T 2i13_A 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPY-KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126 (190)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHCCCCE-ECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHH
T ss_pred CCccCCCcCchhCCHHHHHHHHHhcCCCCCc-cCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH
Confidence 4789999999999999999999987653111 0111122233333344444443322 349999999999999999998
Q ss_pred Hh
Q 010913 123 EA 124 (497)
Q Consensus 123 ~~ 124 (497)
..
T Consensus 127 ~h 128 (190)
T 2i13_A 127 TH 128 (190)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=0.6 Score=40.50 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCCHHHH
Q 010913 295 LMKGAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMA 333 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S~~~i 333 (497)
..++.+|+-+|||. |. ++..|.+.|. .|+++|.++..+
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~ 55 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAF 55 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGG
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHH
Confidence 35678999999875 43 2334444577 899999987544
|
| >2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=86.78 E-value=0.83 Score=39.02 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=47.9
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhc--Ccchhhhhh-----hhcCCccCceehhhhhHhhcc--cccccc--cCCccCCH
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSH--CFDFHSVKT-----ELRLDFYGSFKLINYIRSQVA--ENRCWI--CGLTCQSN 114 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H--~Fd~~~~~~-----~~~ld~Y~~iKliNyiR~~~~--~~~c~~--C~~~~~~~ 114 (497)
+..|-.|++.|.+...+..||+..| .=.-..... .-+.-|...-.|..-++.... ...|.. |+..|.+.
T Consensus 3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 82 (155)
T 2gli_A 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRL 82 (155)
T ss_dssp BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSH
T ss_pred cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCH
Confidence 5689999999999999999999744 211111000 001112223334444444332 234875 99999999
Q ss_pred HHHHHHHHH
Q 010913 115 QDLQNHLHE 123 (497)
Q Consensus 115 ~~~~~Hm~~ 123 (497)
..|..||..
T Consensus 83 ~~l~~H~~~ 91 (155)
T 2gli_A 83 ENLKTHLRS 91 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999975
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=86.76 E-value=2.5 Score=41.74 Aligned_cols=118 Identities=10% Similarity=0.055 Sum_probs=74.0
Q ss_pred CCEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 298 GAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 298 ~~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
..+|--||+|+ | .++..+|.+|. .|+.+|+++..++.+.++++. .|..... ......-.++++. .+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~---~~~~~~l~~i~~~-~~ 80 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGS---LSAEEQLSLISSC-TN 80 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSS---SCHHHHHHTEEEE-CC
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCc---cCHHHHHhhcccc-cc
Confidence 46899999997 3 35667778898 899999999998887766542 2210000 0000000123332 23
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeec
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG 431 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~ 431 (497)
+.+. -...|+|+=. +.....--..++.++.++++|+.+|.-++.++....+.
T Consensus 81 l~~a-------~~~ad~ViEa----v~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia 132 (319)
T 3ado_A 81 LAEA-------VEGVVHIQEC----VPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLF 132 (319)
T ss_dssp HHHH-------TTTEEEEEEC----CCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHH
T ss_pred hHhH-------hccCcEEeec----cccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhh
Confidence 3221 2357888732 33445566789999999999999999888877655544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.68 E-value=1.1 Score=42.85 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|--|++.|+ .+..+++.|+ +|+.+|.++..++.+.+.+...| .++.++.+|+.+.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g---------------~~~~~~~~Dv~~~ 70 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG---------------YDAHGVAFDVTDE 70 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT---------------CCEEECCCCTTCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEeeCCCH
Confidence 579999999999887 5677888899 99999999988877777666665 3678888888664
Q ss_pred cc------ccCCCCCceeEEEecc
Q 010913 373 GE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~------~l~~~~~~fDvIvs~~ 390 (497)
.. .+.-.-++.|++|.+.
T Consensus 71 ~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 71 LAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECC
Confidence 31 0111246799999864
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.49 E-value=2.4 Score=36.40 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=52.8
Q ss_pred CCEEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCC-HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 298 GAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEAS-EKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 298 ~~~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S-~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+|+-+|+|. |. +...|.+.|. .|+++|.+ +..++...... . ..+.++.||..+...
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~-~-----------------~~~~~i~gd~~~~~~ 63 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRL-G-----------------DNADVIPGDSNDSSV 63 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHH-C-----------------TTCEEEESCTTSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhh-c-----------------CCCeEEEcCCCCHHH
Confidence 45688888753 22 2333444576 89999997 44333333221 1 246888898764321
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-....-...|+|++.. ........+....+.+.|...++
T Consensus 64 l~~a~i~~ad~vi~~~------~~d~~n~~~~~~a~~~~~~~~ii 102 (153)
T 1id1_A 64 LKKAGIDRCRAILALS------DNDADNAFVVLSAKDMSSDVKTV 102 (153)
T ss_dssp HHHHTTTTCSEEEECS------SCHHHHHHHHHHHHHHTSSSCEE
T ss_pred HHHcChhhCCEEEEec------CChHHHHHHHHHHHHHCCCCEEE
Confidence 0011245789888542 11233344445556666766665
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=86.33 E-value=2.1 Score=40.30 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..++++||-.|++.|+ ++..+++.|+ +|++++.++..++...+.+...+ .++.++.+|+.+
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~ 89 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG---------------GEAESHACDLSH 89 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CEEEEEECCTTC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC---------------CceeEEEecCCC
Confidence 3578999999987765 3555666788 89999999887776666665554 478899999876
Q ss_pred cccccCC------CCCceeEEEecc
Q 010913 372 LGESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~l~~------~~~~fDvIvs~~ 390 (497)
...-..+ ..+.+|++|.+.
T Consensus 90 ~~~v~~~~~~~~~~~g~id~lv~~A 114 (262)
T 3rkr_A 90 SDAIAAFATGVLAAHGRCDVLVNNA 114 (262)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECC
Confidence 5310000 114689999763
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=86.28 E-value=2.9 Score=39.36 Aligned_cols=80 Identities=28% Similarity=0.311 Sum_probs=55.9
Q ss_pred CCCCEEEEEcC-CCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGC-GTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGC-GtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+++||-.|+ |.|+ ++..+++.|+ +|+.++.+...++.+.+.+...+ ..++.++.+|+.+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~~Dl~~ 84 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLG--------------LGRVEAVVCDVTS 84 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTC--------------SSCEEEEECCTTC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC--------------CCceEEEEeCCCC
Confidence 56889999998 6776 5666777898 89999999887776666654443 2478999999876
Q ss_pred cccccCC------CCCceeEEEecc
Q 010913 372 LGESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~l~~------~~~~fDvIvs~~ 390 (497)
...-..+ .-+.+|++|.+.
T Consensus 85 ~~~v~~~~~~~~~~~g~id~li~~A 109 (266)
T 3o38_A 85 TEAVDALITQTVEKAGRLDVLVNNA 109 (266)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECC
Confidence 5310000 013689999764
|
| >2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* | Back alignment and structure |
|---|
Probab=86.15 E-value=0.46 Score=38.63 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=49.7
Q ss_pred CCcceec--CCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc--ccc--cccCCccCCHHHHH
Q 010913 45 SGFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE--NRC--WICGLTCQSNQDLQ 118 (497)
Q Consensus 45 ~~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~--~~c--~~C~~~~~~~~~~~ 118 (497)
.+..|-+ |+..|.+...+..||+..++-.. .....=+.-|...-.|..-+|..... ..| ..|+..|.+...|.
T Consensus 35 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~ 113 (119)
T 2jp9_A 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113 (119)
T ss_dssp CCEECCSTTCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHH
T ss_pred CCccCCCCCCcCccCCHHHHHHHHHHcCCCCC-ccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHH
Confidence 4678884 99999999999999987654211 11111122233333455555544332 348 78999999999999
Q ss_pred HHHH
Q 010913 119 NHLH 122 (497)
Q Consensus 119 ~Hm~ 122 (497)
.||.
T Consensus 114 ~H~~ 117 (119)
T 2jp9_A 114 RHHN 117 (119)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9986
|
| >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=86.14 E-value=0.32 Score=38.30 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=38.4
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRS 97 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~ 97 (497)
..++||-|.+.|.++. .|+.+.||..-...+.++||--=.-+---||.+.
T Consensus 20 d~iiClecGK~fK~Lk---RHL~~~hgltpeeYR~kwGlp~dyPmvA~~ya~~ 69 (87)
T 2jsp_A 20 DHIVCLECGGSFKSLK---RHLTTHHSMTPEEYREKWDLPVDYPMVAPAYAEA 69 (87)
T ss_dssp SCEECTBTCCEESBHH---HHHHHTTCSCHHHHHHHTTCGGGCCSBCTTTTTT
T ss_pred CceEecccchhhHHHH---HHHHHccCCCHHHHHHHhCCCCCCcccCHHHHHH
Confidence 4689999999999865 9999999999999999999743222333455444
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.10 E-value=2.4 Score=39.47 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 70 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG---------------GTAISVAVDVSDP 70 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CEEEEEECCTTSH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---------------CcEEEEEccCCCH
Confidence 468899999988775 4566677788 89999999887776666665543 4788999998765
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
.....+ .-+.+|++|.+.
T Consensus 71 ~~~~~~~~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 71 ESAKAMADRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310000 013689999764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=86.08 E-value=2 Score=40.97 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~Dv~d~ 85 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG---------------HDVDGSSCDVTST 85 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT---------------CCEEEEECCTTCH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEECCCCCH
Confidence 467899999988875 4566777798 89999999887776666665544 4788999998764
Q ss_pred ccccC------CCCCceeEEEecc
Q 010913 373 GESMQ------IQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~------~~~~~fDvIvs~~ 390 (497)
..-.. -.-+.+|++|.+.
T Consensus 86 ~~v~~~~~~~~~~~g~id~lv~nA 109 (279)
T 3sju_A 86 DEVHAAVAAAVERFGPIGILVNSA 109 (279)
T ss_dssp HHHHHHHHHHHHHHCSCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcEEEECC
Confidence 31000 0114689999764
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=1.6 Score=48.07 Aligned_cols=120 Identities=22% Similarity=0.231 Sum_probs=75.1
Q ss_pred CEEEEEcCCCC--HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC-CCCCCCCCCCceEEEecchhhcccc
Q 010913 299 AVVMDIGCGTG--ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRP-QSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 299 ~~VLDvGCGtG--~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~-~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++|--||+|+= .++..+|.+|. .|+.+|+++..++.+++.+...--..... ..........++.+ ..+...+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l--- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESCGGGG---
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCcHHHH---
Confidence 68999999983 35666777788 99999999999888776553210000000 00000001123332 2333333
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGR 432 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~ 432 (497)
...|+||=. +.....--..++.++..+++|+.+|.-++.++....+..
T Consensus 392 -----~~aDlVIEA----V~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~ 439 (742)
T 3zwc_A 392 -----STVDLVVEA----VFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS 439 (742)
T ss_dssp -----GSCSEEEEC----CCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT
T ss_pred -----hhCCEEEEe----ccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh
Confidence 247888832 345556677899999999999999998888776655543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=85.99 E-value=0.93 Score=45.46 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|.+||-+|++ .|.++..+|++ |+ +|+++- ++.-++.++ ..|. + .++...-.++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~----~lGa--------------~--~vi~~~~~~~ 220 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAK----SRGA--------------E--EVFDYRAPNL 220 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHH----HTTC--------------S--EEEETTSTTH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHH----HcCC--------------c--EEEECCCchH
Confidence 788999999984 57788888887 88 899985 776555444 3443 1 1222111111
Q ss_pred cccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccc-cCCcEEec
Q 010913 373 GESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL-KPGGAILP 420 (497)
Q Consensus 373 ~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~L-kpgG~li~ 420 (497)
...+ ....+.+|+|+-.. + . ...+....+.| ++||+++.
T Consensus 221 ~~~v~~~t~g~~d~v~d~~-g----~----~~~~~~~~~~l~~~~G~iv~ 261 (371)
T 3gqv_A 221 AQTIRTYTKNNLRYALDCI-T----N----VESTTFCFAAIGRAGGHYVS 261 (371)
T ss_dssp HHHHHHHTTTCCCEEEESS-C----S----HHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHccCCccEEEECC-C----c----hHHHHHHHHHhhcCCCEEEE
Confidence 0000 11234599999532 1 1 23455566778 69999883
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.96 E-value=2.3 Score=41.08 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~Dv~d~ 92 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG---------------FDAHGVVCDVRHL 92 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTCH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CceEEEEccCCCH
Confidence 578899999998875 4566777788 89999999988877766666554 3788999998765
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ ..+.+|++|.+.
T Consensus 93 ~~v~~~~~~~~~~~g~id~lvnnA 116 (301)
T 3tjr_A 93 DEMVRLADEAFRLLGGVDVVFSNA 116 (301)
T ss_dssp HHHHHHHHHHHHHHSSCSEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECC
Confidence 310000 013689999764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.64 E-value=1.6 Score=41.00 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~Dv~~~ 68 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG---------------GRIVARSLDARNE 68 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT---------------CEEEEEECCTTCH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CeEEEEECcCCCH
Confidence 467899999998876 4666777798 89999999877766666665554 4789999998765
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-. +.+|++|.+.
T Consensus 69 ~~v~~~~~~~~~~-g~id~lv~nA 91 (252)
T 3h7a_A 69 DEVTAFLNAADAH-APLEVTIFNV 91 (252)
T ss_dssp HHHHHHHHHHHHH-SCEEEEEECC
T ss_pred HHHHHHHHHHHhh-CCceEEEECC
Confidence 310 0001 5789999764
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=85.63 E-value=2.3 Score=42.16 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=29.7
Q ss_pred HHhCCCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCH
Q 010913 289 ILENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASE 330 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~ 330 (497)
+.....+.+|.+||-+|+ | .|.++..+|+. |+..|..++.++
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~ 203 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRP 203 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCS
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 334456789999999997 3 47788888887 884445555543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=1.2 Score=45.57 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred CCEEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 298 GAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+..|+-+|+|. |. ++..|.+.|. .|++||.++..++.+++ .| +.++.||+.+...-
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~----~g-----------------~~vi~GDat~~~~L 61 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRK----FG-----------------MKVFYGDATRMDLL 61 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHH----TT-----------------CCCEESCTTCHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHh----CC-----------------CeEEEcCCCCHHHH
Confidence 35688888865 32 2334444577 89999999998876653 23 46788888664311
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
....-..+|+||+.. ........+....+.+.|...++
T Consensus 62 ~~agi~~A~~viv~~------~~~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 62 ESAGAAKAEVLINAI------DDPQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp HHTTTTTCSEEEECC------SSHHHHHHHHHHHHHHCTTCEEE
T ss_pred HhcCCCccCEEEECC------CChHHHHHHHHHHHHhCCCCeEE
Confidence 112346789888532 12233334455567788887776
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.22 E-value=3.2 Score=39.59 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeC-CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEA-SEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~-S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.++. ++..++...+.+...+ .++.++.+|+.+
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Dv~d 90 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG---------------ARVIFLRADLAD 90 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT---------------CCEEEEECCTTS
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC---------------CcEEEEEecCCC
Confidence 568899999988876 4666777798 8999995 6655555555554444 478999999877
Q ss_pred cccccCC------CCCceeEEEecc
Q 010913 372 LGESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~l~~------~~~~fDvIvs~~ 390 (497)
...-..+ .-+.+|++|.+.
T Consensus 91 ~~~v~~~~~~~~~~~g~iD~lvnnA 115 (280)
T 4da9_A 91 LSSHQATVDAVVAEFGRIDCLVNNA 115 (280)
T ss_dssp GGGHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 5310000 013689999764
|
| >2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.11 E-value=0.3 Score=35.61 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=42.0
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccccccc-ccCCccCCHHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCW-ICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~-~C~~~~~~~~~~~~Hm~ 122 (497)
..+..|-+|++.|. ...+..|++. .+- ....|. .||..|.....|..||.
T Consensus 8 ~~~~~C~~C~k~f~-~~~L~~H~~~-~~~---------------------------~p~~C~~~C~k~f~~~~~L~~H~~ 58 (66)
T 2eod_A 8 KRTQPCTYCTKEFV-FDTIQSHQYQ-CPR---------------------------LPVACPNQCGVGTVAREDLPGHLK 58 (66)
T ss_dssp CCEEECSSSCCEEE-HHHHHHHHHH-CSS---------------------------SEEECTTCCSCCEEETTTHHHHHH
T ss_pred CCCeeccccCCccC-HHHHHHHHHH-cCC---------------------------cCccCCcccCcccccHHHHHHHHH
Confidence 45799999999999 9999999985 331 012488 89999988888999986
Q ss_pred HhccCc
Q 010913 123 EAYNLK 128 (497)
Q Consensus 123 ~~~~~~ 128 (497)
.|++
T Consensus 59 --~hc~ 62 (66)
T 2eod_A 59 --DSCN 62 (66)
T ss_dssp --TTSS
T ss_pred --hhcc
Confidence 3554
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.97 E-value=2.5 Score=39.71 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~Dv~d~ 73 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG---------------GKAIGLECNVTDE 73 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEECCCCCH
Confidence 568899999988876 4566777798 89999999887776666665554 4788899988765
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ .-+.+|++|.+.
T Consensus 74 ~~v~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 74 QHREAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310000 013689999764
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=84.96 E-value=2.2 Score=44.76 Aligned_cols=42 Identities=33% Similarity=0.304 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
..+|++|+-+|+|. |......++. |+ +|+++|.++.-...|.
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~ 314 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAM 314 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 46899999999875 4444444444 87 9999999987655443
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.92 E-value=0.71 Score=45.84 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred HHhCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 289 ILENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.....+.+|.+||-.|++ .|.++..+|++ |..+|++++ ++.-.+.++ .|. +.+.-.
T Consensus 134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga--------------~~~~~~ 193 (349)
T 4a27_A 134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSV--------------THLFDR 193 (349)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGS--------------SEEEET
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCC--------------cEEEcC
Confidence 3455677899999999983 36677778876 666999998 443333332 332 111111
Q ss_pred ecch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 366 QGMV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 366 ~gd~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+. ..+. ....+.+|+|+-.. + . . .+....++|+|||+++
T Consensus 194 ~~~~~~~~~---~~~~~g~Dvv~d~~-g----~----~-~~~~~~~~l~~~G~~v 235 (349)
T 4a27_A 194 NADYVQEVK---RISAEGVDIVLDCL-C----G----D-NTGKGLSLLKPLGTYI 235 (349)
T ss_dssp TSCHHHHHH---HHCTTCEEEEEEEC-C----------------CTTEEEEEEEE
T ss_pred CccHHHHHH---HhcCCCceEEEECC-C----c----h-hHHHHHHHhhcCCEEE
Confidence 1111 1111 12246799999532 1 1 1 2355678999999988
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=84.54 E-value=3.5 Score=39.07 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
-.+|+++|--|.+.|+ .+..+++.|+ +|+.+|.+.. +.+.+.++..| .++.++.+|+.+
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g---------------~~~~~~~~Dv~d 67 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDG---------------GNASALLIDFAD 67 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT---------------CCEEEEECCTTS
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhC---------------CcEEEEEccCCC
Confidence 4679999999999987 5777888899 8999998753 22334444554 368888888866
Q ss_pred cccc-cCCCCCceeEEEecc
Q 010913 372 LGES-MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~-l~~~~~~fDvIvs~~ 390 (497)
...- .-+..+.+|++|.+.
T Consensus 68 ~~~v~~~~~~g~iDiLVNNA 87 (247)
T 4hp8_A 68 PLAAKDSFTDAGFDILVNNA 87 (247)
T ss_dssp TTTTTTSSTTTCCCEEEECC
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 4311 012346799999764
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.41 E-value=2.8 Score=39.79 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+..
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG---------------GTALAQVLDVTDRH 66 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT---------------CEEEEEECCTTCHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEcCCCCHH
Confidence 57899999988876 4566777798 89999999887776666665554 47888888886643
Q ss_pred cccCC------CCCceeEEEecc
Q 010913 374 ESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 374 ~~l~~------~~~~fDvIvs~~ 390 (497)
.-..+ .-+.+|++|.+.
T Consensus 67 ~v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 67 SVAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 10000 114689999764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.29 E-value=4 Score=38.58 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+++||-.|++.|+ ++..+++.|+ +|++++.++..++...+.+...+ .++.++.+|+.+
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~Dl~~ 91 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG---------------AKVHTFVVDCSN 91 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTC
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC---------------CeEEEEEeeCCC
Confidence 3578899999977664 3445666688 89999999876665555554443 368899998866
Q ss_pred cccc------cCCCCCceeEEEecc
Q 010913 372 LGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~------l~~~~~~fDvIvs~~ 390 (497)
...- +.-.-+.+|+||.+.
T Consensus 92 ~~~v~~~~~~~~~~~g~iD~li~~A 116 (272)
T 1yb1_A 92 REDIYSSAKKVKAEIGDVSILVNNA 116 (272)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred HHHHHHHHHHHHHHCCCCcEEEECC
Confidence 4310 000124689999764
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.22 E-value=2.9 Score=38.77 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|++++.++...+...+.++..+ .++.++.+|+.+.
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 66 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG---------------FKARGLVLNISDI 66 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CceEEEEecCCCH
Confidence 357899999987775 4566677788 89999999987776666666554 3788999988664
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-..+.+|++|.+.
T Consensus 67 ~~~~~~~~~~~~~~~~id~li~~A 90 (247)
T 3lyl_A 67 ESIQNFFAEIKAENLAIDILVNNA 90 (247)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310 001134689999764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.20 E-value=5.3 Score=41.37 Aligned_cols=106 Identities=24% Similarity=0.272 Sum_probs=63.0
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC-------C-CCCCCCCCCCCCCCCCceEEEecc
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------D-FWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~-------g-l~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
.+|.-||+|+ | .++..++++|. .|+.+|.++..++.+++.+..+ | +.. .........+ ..+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~-------~~~~~~~~~i-~~~ 108 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG-------QASAKPKLRF-SSS 108 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTT-------CCCCCCCEEE-ESC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHhhh-cCC
Confidence 5799999997 3 35666777787 8999999998887776543210 1 000 0000011222 334
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
...+ ...|+||.... ....-...++..+...++|+.+|+.++..+
T Consensus 109 ~~~~--------~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~snTs~~ 153 (463)
T 1zcj_A 109 TKEL--------STVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCTNTSAL 153 (463)
T ss_dssp GGGG--------TTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred HHHH--------CCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEeCCCCc
Confidence 3222 35799985421 122234677888888999998887555443
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.10 E-value=2.6 Score=40.25 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|++++.+..-.+.+.+.+...+ ..++.++.+|+.+.
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~~Dl~~~ 74 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSN--------------HENVVFHQLDVTDP 74 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--------------CCSEEEEECCTTSC
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CCceEEEEccCCCc
Confidence 467899999988775 4556666788 99999999877766666555443 24789999998775
Q ss_pred -ccc------cCCCCCceeEEEecc
Q 010913 373 -GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 -~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-..+.+|++|.+.
T Consensus 75 ~~~v~~~~~~~~~~~g~iD~lv~nA 99 (311)
T 3o26_A 75 IATMSSLADFIKTHFGKLDILVNNA 99 (311)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECC
Confidence 210 000124689999764
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=83.96 E-value=2.4 Score=39.86 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=54.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~Dv~~~ 67 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP---------------GQILTVQMDVRNT 67 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST---------------TCEEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEEccCCCH
Confidence 468899999988775 4566777798 89999999887776666554332 4788999998764
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ .-+.+|++|.+.
T Consensus 68 ~~v~~~~~~~~~~~g~id~lv~nA 91 (257)
T 3imf_A 68 DDIQKMIEQIDEKFGRIDILINNA 91 (257)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310000 013689999764
|
| >2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=83.83 E-value=1.4 Score=37.49 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=15.5
Q ss_pred Ccceec--CCCCCCCHHHHHHHhhhhc
Q 010913 46 GFLCLF--CDAGYSSCDTLFEHCRLSH 70 (497)
Q Consensus 46 ~~~CLF--C~~~~~s~~~~l~Hm~~~H 70 (497)
+..|-+ |++.|.+...+..||+..+
T Consensus 67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~ 93 (155)
T 2gli_A 67 PHKCTFEGCRKSYSRLENLKTHLRSHT 93 (155)
T ss_dssp CCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred CccCCCCCCCCcccCHHHHHHHHHHcC
Confidence 456665 6666666666666666533
|
| >1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1 | Back alignment and structure |
|---|
Probab=83.82 E-value=0.77 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=21.0
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhc
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSH 70 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H 70 (497)
+..|-.|++.|.+...+..||+..+
T Consensus 1 ~~~C~~C~k~f~~~~~l~~H~~~h~ 25 (27)
T 1znf_A 1 XYKCGLCERSFVEKSALSRHQRVHK 25 (27)
T ss_dssp -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred CccCCCCCCcCCCHHHHHHHHHHcC
Confidence 3579999999999999999998643
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=83.65 E-value=0.37 Score=48.83 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
.++.+|+-+|+|. |......++. |+ +|+++|.++..++.+.+
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 3678999999985 5554444444 98 89999999876655543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=83.27 E-value=0.99 Score=44.57 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=43.1
Q ss_pred CceEEE-ecchhhcccccCCCCCceeEEEecccccccc---------ChhhHHHHHHHHhccccCCcEEeccC
Q 010913 360 GKMEVV-QGMVEELGESMQIQPHSVDVLVSEWMGYCLL---------YESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 360 ~~i~~i-~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~---------~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
....++ +||..+... .++.++||+|+..+. |... +...+...|.++.++|+|||.+++..
T Consensus 37 ~~~~l~i~gD~l~~L~--~l~~~svDlI~tDPP-Y~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLA--KLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp CEEEEEEECCHHHHHH--TSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceEEECCcHHHHHH--hCccCCcCEEEECCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 456788 999976532 245779999999864 3222 23356778888999999999998543
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=82.61 E-value=4 Score=38.59 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeC-CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEA-SEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~-S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
...+++||-.|++.|+ ++..+++.|+ +|+.++. ++...+...+.+...+ .++.++.+|+.
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~ 89 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKG---------------YKAAVIKFDAA 89 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT---------------CCEEEEECCTT
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC---------------CceEEEECCCC
Confidence 3578999999988876 4566777788 8999998 5555555555555554 37889999886
Q ss_pred hcccccCC------CCCceeEEEecc
Q 010913 371 ELGESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 371 ~l~~~l~~------~~~~fDvIvs~~ 390 (497)
+......+ ..+.+|++|.+.
T Consensus 90 ~~~~v~~~~~~~~~~~g~id~li~nA 115 (271)
T 4iin_A 90 SESDFIEAIQTIVQSDGGLSYLVNNA 115 (271)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 64310000 124689999764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.47 E-value=4.1 Score=39.22 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCC------------HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEAS------------EKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S------------~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..+++||-.|++.|+ ++..+++.|+ +|+++|.+ +..++.+.+.+...+ .
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 89 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG---------------R 89 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT---------------C
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcC---------------C
Confidence 568999999998886 4666777798 89999987 555555555554444 4
Q ss_pred ceEEEecchhhcccccCC------CCCceeEEEecc
Q 010913 361 KMEVVQGMVEELGESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~------~~~~fDvIvs~~ 390 (497)
++.++.+|+.+...-..+ .-+.+|++|.+.
T Consensus 90 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA 125 (299)
T 3t7c_A 90 RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANA 125 (299)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 788999998765310000 114689998764
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.32 E-value=3.5 Score=38.81 Aligned_cols=80 Identities=23% Similarity=0.222 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+- .++.++.+|+.+.
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~--------------~~~~~~~~Dv~~~ 72 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGS--------------GKVIGVQTDVSDR 72 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSS--------------SCEEEEECCTTSH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCC--------------CcEEEEEcCCCCH
Confidence 468899999988775 4556677798 899999998877766666554431 4788999998764
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ .-+.+|++|.+.
T Consensus 73 ~~v~~~~~~~~~~~g~id~lvnnA 96 (262)
T 3pk0_A 73 AQCDALAGRAVEEFGGIDVVCANA 96 (262)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 310000 013689999764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=82.29 E-value=3.6 Score=40.17 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+...+. ..++.++.+|+.+.
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~-------------~~~~~~~~~Dl~~~ 71 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGS-------------GPEVMGVQLDVASR 71 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-------------GGGEEEEECCTTCH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CCeEEEEECCCCCH
Confidence 467899999999886 4566777788 899999998877766665554332 13788999998764
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-..+.+|++|.+.
T Consensus 72 ~~v~~~~~~~~~~~g~id~lv~nA 95 (319)
T 3ioy_A 72 EGFKMAADEVEARFGPVSILCNNA 95 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECC
Confidence 310 000124689999764
|
| >2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.20 E-value=0.95 Score=33.25 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=40.9
Q ss_pred CCCcceec--CCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccc--cCCccCCHHHHHH
Q 010913 44 ESGFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWI--CGLTCQSNQDLQN 119 (497)
Q Consensus 44 ~~~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~--C~~~~~~~~~~~~ 119 (497)
..+..|-. |++.|.+...+..||+..++- ....|.+ |+..|.....|..
T Consensus 15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~---------------------------~~~~C~~~~C~k~f~~~~~l~~ 67 (72)
T 2epa_A 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGE---------------------------KPFSCSWKGCERRFARSDELSR 67 (72)
T ss_dssp CCCEECSSTTTCCEESSHHHHHHHHHHHSSS---------------------------CSEECCCTTCCCEESSHHHHHH
T ss_pred cCceeCCCCCCccccCCHHHHHHHHHhcCCC---------------------------CCccCCCCCCCcccCCHHHHHh
Confidence 45789988 999999999999999754321 0124865 9999999999999
Q ss_pred HHH
Q 010913 120 HLH 122 (497)
Q Consensus 120 Hm~ 122 (497)
||.
T Consensus 68 H~~ 70 (72)
T 2epa_A 68 HRR 70 (72)
T ss_dssp HTT
T ss_pred Hhh
Confidence 874
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=81.99 E-value=4.3 Score=38.61 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCC----------------HHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEAS----------------EKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S----------------~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
..+++||-.|++.|+ ++..+++.|+ +|+++|.+ ...++...+.+...+
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 75 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN------------ 75 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT------------
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC------------
Confidence 568999999999886 4666777798 89999987 555544444444433
Q ss_pred CCCCceEEEecchhhcccccCC------CCCceeEEEecc
Q 010913 357 NNAGKMEVVQGMVEELGESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~------~~~~fDvIvs~~ 390 (497)
.++.++.+|+.+...-..+ .-+.+|++|.+.
T Consensus 76 ---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 112 (286)
T 3uve_A 76 ---RRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANA 112 (286)
T ss_dssp ---CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred ---CceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 4788999988764310000 013689999764
|
| >1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A | Back alignment and structure |
|---|
Probab=81.96 E-value=1.5 Score=39.00 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=0.0
Q ss_pred CCCCcceec--CCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccc---cCCccCCHHHH
Q 010913 43 LESGFLCLF--CDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWI---CGLTCQSNQDL 117 (497)
Q Consensus 43 ~~~~~~CLF--C~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~---C~~~~~~~~~~ 117 (497)
...+..|-+ |++.|.+...+..||+..+| ..|.. |+..|.+...|
T Consensus 131 ~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~------------------------------~~C~~~~~C~~~f~~~~~l 180 (190)
T 1tf6_A 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG------------------------------YPCKKDDSCSFVGKTWTLY 180 (190)
T ss_dssp SSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS------------------------------CCCCSTTTCCCCCSCHHHH
T ss_pred CCCCccCCCCCCCchhcCHHHHHHHHHHhCC------------------------------CcCCCCCcCCCccccHHHH
Q ss_pred HHHHH
Q 010913 118 QNHLH 122 (497)
Q Consensus 118 ~~Hm~ 122 (497)
..||.
T Consensus 181 ~~H~~ 185 (190)
T 1tf6_A 181 LKHVA 185 (190)
T ss_dssp HHHHT
T ss_pred HHHHH
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.88 E-value=4.4 Score=38.45 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeC-------------CHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEA-------------SEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~-------------S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
...+++||-.|++.|+ ++..+++.|+ +|+++|. ++..++.+.+.+...+
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 76 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG-------------- 76 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--------------
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--------------
Confidence 3578999999998876 4666777798 8999997 5666655555555444
Q ss_pred CCceEEEecchhhcccccCC------CCCceeEEEecc
Q 010913 359 AGKMEVVQGMVEELGESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~------~~~~fDvIvs~~ 390 (497)
.++.++.+|+.+...-..+ .-+.+|++|.+.
T Consensus 77 -~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 113 (280)
T 3pgx_A 77 -RKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANA 113 (280)
T ss_dssp -CCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred -CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4788888888664310000 014689999764
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=81.83 E-value=3.5 Score=37.90 Aligned_cols=77 Identities=16% Similarity=0.051 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-hCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 298 GAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAK-DNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 298 ~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~-~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+++||-.|++.|+ ++..+++.|+ +|+.++.+..-++.+.+.+. ..+ .++.++.+|+.+..
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~~ 65 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQG---------------VEVFYHHLDVSKAE 65 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC---------------CCEEEEECCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcC---------------CeEEEEEeccCCHH
Confidence 5789999987765 4556666788 89999999876665554443 223 47889999987653
Q ss_pred cccCCC------CCceeEEEecc
Q 010913 374 ESMQIQ------PHSVDVLVSEW 390 (497)
Q Consensus 374 ~~l~~~------~~~fDvIvs~~ 390 (497)
.-..+- -+.+|++|.+.
T Consensus 66 ~v~~~~~~~~~~~g~id~li~~A 88 (235)
T 3l77_A 66 SVEEFSKKVLERFGDVDVVVANA 88 (235)
T ss_dssp HHHHHCC-HHHHHSSCSEEEECC
T ss_pred HHHHHHHHHHHhcCCCCEEEECC
Confidence 110011 13689999763
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=81.64 E-value=6.4 Score=37.26 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=53.0
Q ss_pred EEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 300 ~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+|.-||||. | .++..+++.|. +|+++|.++..++.+. ..|. ...+ ..+..+
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~~g~---------------~~~~-~~~~~~------ 54 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAV----ERQL---------------VDEA-GQDLSL------ 54 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH----HTTS---------------CSEE-ESCGGG------
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH----hCCC---------------Cccc-cCCHHH------
Confidence 577889886 3 24555666687 8999999987665443 2343 1111 222222
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
. ...|+|+... .......++..+...++||.+++
T Consensus 55 ~--~~~D~vi~av------~~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 55 L--QTAKIIFLCT------PIQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp G--TTCSEEEECS------CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred h--CCCCEEEEEC------CHHHHHHHHHHHHhhCCCCCEEE
Confidence 2 4689998542 23356678888888898887765
|
| >1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* | Back alignment and structure |
|---|
Probab=81.41 E-value=0.76 Score=37.67 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=50.1
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhh-hhhcCCccCceehhhhhHhhccc--ccccc--cCCccCCHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVK-TELRLDFYGSFKLINYIRSQVAE--NRCWI--CGLTCQSNQDLQN 119 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~-~~~~ld~Y~~iKliNyiR~~~~~--~~c~~--C~~~~~~~~~~~~ 119 (497)
.+..|-.|+..|.+...+..||+..++-..-... ..=+.-|...-.|..-+|..... ..|.. |+..|.+...|..
T Consensus 33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~ 112 (124)
T 1ubd_C 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112 (124)
T ss_dssp CCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHH
T ss_pred CCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHH
Confidence 3678999999999999999999865542111100 00111222333344444443322 34965 9999999999999
Q ss_pred HHHHh
Q 010913 120 HLHEA 124 (497)
Q Consensus 120 Hm~~~ 124 (497)
||...
T Consensus 113 H~~~H 117 (124)
T 1ubd_C 113 HILTH 117 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99853
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=81.35 E-value=4 Score=39.20 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|--|++.|+ .+..+++.|+ +|+.+|.++..++.+.+.+ + .++..+.+|+.+.
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g---------------~~~~~~~~Dv~~~ 87 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G---------------GGAVGIQADSANL 87 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C---------------TTCEEEECCTTCH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C---------------CCeEEEEecCCCH
Confidence 679999999999987 5677788899 9999999988776554433 2 3567788887664
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-++.|++|.+.
T Consensus 88 ~~v~~~~~~~~~~~G~iDiLVNNA 111 (273)
T 4fgs_A 88 AELDRLYEKVKAEAGRIDVLFVNA 111 (273)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310 001135799999764
|
| >1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A | Back alignment and structure |
|---|
Probab=81.24 E-value=0.93 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=22.7
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcC
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
+..|-.|+..|.....+..|++..|+
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred CccCCCCCCccCCHHHHHHHHHHHcc
Confidence 46799999999999999999987664
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=81.21 E-value=5.3 Score=37.10 Aligned_cols=79 Identities=27% Similarity=0.232 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|++++.++.......+.++..+ .++.++.+|+.+.
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~D~~~~ 74 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG---------------HDVSSVVMDVTNT 74 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CceEEEEecCCCH
Confidence 457899999977664 3445666688 89999999876655545544433 3688999988764
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ ..+.+|+||.+.
T Consensus 75 ~~~~~~~~~~~~~~~~id~vi~~A 98 (260)
T 3awd_A 75 ESVQNAVRSVHEQEGRVDILVACA 98 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310000 013689998753
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=81.07 E-value=5.4 Score=37.54 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-CCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKD-NDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+.. .+- .++.++.+|+.+
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~--------------~~~~~~~~Dv~~ 70 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPG--------------ARLFASVCDVLD 70 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTT--------------CCEEEEECCTTC
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC--------------ceEEEEeCCCCC
Confidence 568899999998876 4566777798 899999998877666555543 321 358889998876
Q ss_pred cccc------cCCCCCceeEEEecc
Q 010913 372 LGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~------l~~~~~~fDvIvs~~ 390 (497)
...- +.-.-+.+|++|.+.
T Consensus 71 ~~~v~~~~~~~~~~~g~id~lvnnA 95 (265)
T 3lf2_A 71 ALQVRAFAEACERTLGCASILVNNA 95 (265)
T ss_dssp HHHHHHHHHHHHHHHCSCSEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4310 000124689999764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=81.03 E-value=5.4 Score=37.10 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~Dv~~~ 68 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG---------------AKVHVLELDVADR 68 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEECCCCCH
Confidence 457899999988765 4556666788 89999999876665555554433 3688888888664
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ .-+.+|++|.+.
T Consensus 69 ~~~~~~~~~~~~~~g~id~lv~nA 92 (247)
T 2jah_A 69 QGVDAAVASTVEALGGLDILVNNA 92 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310000 014689999763
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=80.95 E-value=8 Score=36.93 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=62.8
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC---------CCCCCCCCCCCCCCCCCceEEEec
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN---------DFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~---------gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
++|.-||+|+ | .++..++++|. .|+.+|.++..++.+.+.+... ++.. ... .....++.+ ..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~----~~~-~~~~~~i~~-~~ 77 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAAD----GAA-QKALGGIRY-SD 77 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTT----THH-HHHHHHCEE-ES
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCH----HHH-HHHHcCeEE-eC
Confidence 5788889886 2 35566677788 9999999999888777653221 1100 000 000012332 23
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+..+. -...|+|+... -........++..+...++|+.+++-.+.+
T Consensus 78 ~~~~~-------~~~aDlVi~av----~~~~~~~~~v~~~l~~~~~~~~il~s~tS~ 123 (283)
T 4e12_A 78 DLAQA-------VKDADLVIEAV----PESLDLKRDIYTKLGELAPAKTIFATNSST 123 (283)
T ss_dssp CHHHH-------TTTCSEEEECC----CSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred CHHHH-------hccCCEEEEec----cCcHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 33322 23579998542 122235567888888999999887744433
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=80.91 E-value=5 Score=38.09 Aligned_cols=82 Identities=18% Similarity=0.119 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+.. ..++.++.+|+.+.
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~------------~~~~~~~~~Dv~~~ 75 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGAN------------GGAIRYEPTDITNE 75 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCS------------SCEEEEEECCTTSH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCC------------CceEEEEeCCCCCH
Confidence 468899999988775 4566777798 8999999988776666666544320 13788999998764
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ ..+.+|++|.+.
T Consensus 76 ~~v~~~~~~~~~~~g~id~lv~nA 99 (281)
T 3svt_A 76 DETARAVDAVTAWHGRLHGVVHCA 99 (281)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310000 014689999764
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.79 E-value=4.2 Score=38.46 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCC------------HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEAS------------EKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S------------~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..+++||-.|++.|+ ++..+++.|+ +|+++|.+ ...++...+.+...+ .
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 74 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG---------------S 74 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT---------------C
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC---------------C
Confidence 568999999988775 4666777798 89999987 555554444444433 4
Q ss_pred ceEEEecchhhcccccCC------CCCceeEEEecc
Q 010913 361 KMEVVQGMVEELGESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~------~~~~fDvIvs~~ 390 (497)
++.++.+|+.+...-..+ .-+.+|++|.+.
T Consensus 75 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA 110 (278)
T 3sx2_A 75 RIVARQADVRDRESLSAALQAGLDELGRLDIVVANA 110 (278)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 789999998764310000 014689999764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.75 E-value=5.4 Score=36.82 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch--
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-- 369 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-- 369 (497)
..++++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+. .++.++..++
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~d~d~ 75 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQ--------------PQPLIIALNLEN 75 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTS--------------CCCEEEECCTTT
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC--------------CCceEEEecccc
Confidence 3578999999988775 4556667788 899999998887777666665542 3566776665
Q ss_pred hhccc------ccCCCCCceeEEEecc
Q 010913 370 EELGE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 370 ~~l~~------~l~~~~~~fDvIvs~~ 390 (497)
.+... .+.-.-+.+|++|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~g~id~lv~nA 102 (247)
T 3i1j_A 76 ATAQQYRELAARVEHEFGRLDGLLHNA 102 (247)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 22110 0000113689999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 497 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 9e-49 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-44 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 2e-43 | |
| d1wira_ | 121 | g.37.1.5 (A:) Protein arginine N-methyltransferase | 2e-25 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 4e-09 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-07 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-07 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-07 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-07 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 1e-06 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-06 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-06 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 5e-06 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 6e-06 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 6e-06 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 1e-05 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 5e-05 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 7e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-04 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 1e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-04 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 2e-04 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.002 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 0.002 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 0.004 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 168 bits (426), Expect = 9e-49
Identities = 89/219 (40%), Positives = 126/219 (57%), Gaps = 25/219 (11%)
Query: 265 SYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVI 324
SY+ FGIH EM+ D+VRT +YR ++ N L K VV+D+G GTGIL +FAA+AGA +VI
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 325 AVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVD 384
+E S +I K N +G + +++ VD
Sbjct: 61 GIECSSISDYA-VKIVKANKLDHVVTIIKGKVEE-----------------VELPVEKVD 102
Query: 385 VLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG---RGGTSLPFWE 441
+++SEWMGYCL YESML++VL ARD+WL P G I PD AT++V + +WE
Sbjct: 103 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWE 162
Query: 442 NVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVL 480
NVYGF MSC+ +++ P+VDVVD LVT++ ++
Sbjct: 163 NVYGFDMSCIKDVAIKE----PLVDVVDPKQLVTNACLI 197
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 156 bits (394), Expect = 3e-44
Identities = 83/221 (37%), Positives = 132/221 (59%), Gaps = 25/221 (11%)
Query: 263 FGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASR 322
F SY +GIH EM+ DK+RT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA +
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 323 VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHS 382
V+ V+ SE + I + + +++G +EE+ +
Sbjct: 61 VLGVDQSEILYQAMDIIRLNKLED--------------TITLIKGKIEEV----HLPVEK 102
Query: 383 VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG---RGGTSLPF 439
VDV++SEWMGY LL+ESML SVL+A++++L GG++ PD T+ + + + F
Sbjct: 103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAF 162
Query: 440 WENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVL 480
W++VYGF MSC+ + V+ + +V+V+D L+++ +
Sbjct: 163 WDDVYGFKMSCMKKAVIPE----AVVEVLDPKTLISEPCGI 199
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 154 bits (389), Expect = 2e-43
Identities = 87/224 (38%), Positives = 126/224 (56%), Gaps = 25/224 (11%)
Query: 260 ESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG 319
+ YF SY +GIH EM+ D VRT SYR AI++N L K +V+D+GCGTGILS+FAA+ G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 320 ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379
A VI V+ S + +A ++ + N F G + + + +
Sbjct: 61 AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED-----------------VHLP 102
Query: 380 PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG---RGGTS 436
VD+++SEWMGY LLYESM+ +VL+ARD +L GG I PD ++ +AG
Sbjct: 103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEK 162
Query: 437 LPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVL 480
L +W++VYGF S V+ + PIVD V+ +++ T S L
Sbjct: 163 LNYWQDVYGFDYSPFVPLVLHE----PIVDTVERNNVNTTSDKL 202
|
| >d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 121 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: variant C2H2 finger domain: Protein arginine N-methyltransferase 3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.4 bits (245), Expect = 2e-25
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 24/133 (18%)
Query: 32 DWGDWSEDDGGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKL 91
G+ + CLFCD ++S + F HC+L H F+ S+ + L+FYG KL
Sbjct: 5 SSGEPAHG----RQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKL 60
Query: 92 INYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKLLY 151
IN+IR + E N + W+K++YLKP ++DD LL
Sbjct: 61 INFIRLKN--------------------PTVEYMNSIYNPVPWEKDEYLKPVLEDDLLLQ 100
Query: 152 SFGEDEVDEEDND 164
ED +
Sbjct: 101 FDVEDLYEPVSTP 113
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 55.1 bits (132), Expect = 4e-09
Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFW 346
I+ L G ++++G G+G +S + A G + VE E A +
Sbjct: 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI 136
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL 396
+ S +I + ++ ++ ++ + ++ + L
Sbjct: 137 GNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYL 186
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 50.7 bits (120), Expect = 1e-07
Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 15/132 (11%)
Query: 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
+ +A L +G V+D+GCG G L +AG V+ +E A A++
Sbjct: 12 FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 71
Query: 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSV 404
+ + M + + Y L
Sbjct: 72 RRFKVFFRAQDSYG---------------RHMDLGKEFDVISSQFSFHYAFSTSESLDIA 116
Query: 405 LFARDQWLKPGG 416
+ L+PGG
Sbjct: 117 QRNIARHLRPGG 128
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.1 bits (121), Expect = 1e-07
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 7/167 (4%)
Query: 256 KKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFA 315
+ + + Y ++ + + RT Y+ +L V+D+ CGTG+ S+
Sbjct: 15 EGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIML 74
Query: 316 AQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375
+ G V +V+AS+KM A + + + N ++ G+
Sbjct: 75 VEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD----KDVPAGDG 129
Query: 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422
+ + +S L ++PGG ++ D
Sbjct: 130 FDAVICLGNSF--AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (119), Expect = 2e-07
Identities = 35/270 (12%), Positives = 74/270 (27%), Gaps = 27/270 (10%)
Query: 151 YSFGEDEVDEEDNDAELMRDVMNFENISVDDGSSKDKSATNNCTADEIGKVAAVSTLNGH 210
+ D E +R V E I + ++ + T N
Sbjct: 20 LPVYDKHHDAAHEIIETIRWVC--EEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRA 77
Query: 211 PNMENSSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSYSSFG 270
+ + K + + L +V + + S
Sbjct: 78 IDSIHQLWKGTTQ--PMKLNTRPSTGLLRHILQQVY-----NHSVTDPEKLNNYEPFSPE 130
Query: 271 IHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEAS 329
++ E D V +++ + + +D+G G G + L A A VE +
Sbjct: 131 VYGETSFDLVA------QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKA 184
Query: 330 EKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE 389
+ A A + ++ W + + + +G +I + V+
Sbjct: 185 DIPAKYAETMDREFRKWMKWYGKK-----HAEYTLERGDFLSEEWRERI--ANTSVIFVN 237
Query: 390 WMGYCLLYESMLSSVLFARDQWLKPGGAIL 419
+ + L +K GG I+
Sbjct: 238 NFAFGPEVDHQLKERF----ANMKEGGRIV 263
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.5 bits (120), Expect = 2e-07
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 10/134 (7%)
Query: 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDF 345
+ + L KG MD+G G G + AA G + E + + + ++
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKK 265
Query: 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL 405
N + + V+ + I DV++ L++ L+ +
Sbjct: 266 RCKLYGMRLNNVEF---SLKKSFVDNNRVAELI--PQCDVILV----NNFLFDEDLNKKV 316
Query: 406 FARDQWLKPGGAIL 419
Q K G I+
Sbjct: 317 EKILQTAKVGCKII 330
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 22/131 (16%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD 348
+++ +L V+D+ G G ++ A +V+A + +E + VA + N
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQV 65
Query: 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR 408
E + + +S +
Sbjct: 66 EYVQGDAEQMPFTDERFHIV---------------------TCRIAAHHFPNPASFVSEA 104
Query: 409 DQWLKPGGAIL 419
+ LK GG +L
Sbjct: 105 YRVLKKGGQLL 115
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 14/135 (10%), Positives = 34/135 (25%), Gaps = 7/135 (5%)
Query: 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344
Q + +++ GA V+ CG + + G V+ E SE +
Sbjct: 8 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQP 66
Query: 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSV 404
+ + ++ + + + L M
Sbjct: 67 HITSQGDFKVYAAPGIEIWCGDFFA------LTARDIGHCAAFYDRAAMIALPADMRERY 120
Query: 405 LFARDQWLKPGGAIL 419
+ + + + L
Sbjct: 121 VQHLEALMPQACSGL 135
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 46.5 bits (109), Expect = 3e-06
Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 27/155 (17%)
Query: 265 SYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVI 324
S S IH +K + + G ++D+G G+G + A+
Sbjct: 7 SESEHRIHNPFTEEKYA------TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGT 60
Query: 325 AVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVD 384
++ S R + G + + + +
Sbjct: 61 GIDMSSLF----------TAQAKRRAEELGVSERVHFIH----NDAAGYVANEKCDVAAC 106
Query: 385 VLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419
V + G E +L+ Q LKPGG +L
Sbjct: 107 VGATWIAGGFAGAEELLA-------QSLKPGGIML 134
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 45.7 bits (107), Expect = 4e-06
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 22/131 (16%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD 348
+++ V+DIG G G +L + I V+A+++M VA+ A++
Sbjct: 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENV 66
Query: 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR 408
R Q + + + Y + S + +
Sbjct: 67 RFQQGTAESLPFPDDSFDII---------------------TCRYAAHHFSDVRKAVREV 105
Query: 409 DQWLKPGGAIL 419
+ LK G L
Sbjct: 106 ARVLKQDGRFL 116
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 5e-06
Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 23/183 (12%)
Query: 260 ESYFGSYSSFGIHREMISDKVRTDSYRQAILEN------PSLMKGAVVMDIGCGTGILSL 313
+ +F + + LE P ++G ++DIG G I +
Sbjct: 8 QKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQV 67
Query: 314 FAAQAGASRVIAVEASEKMAAVATQIAKDNDF----------------WWDRPQSEGNIN 357
AA + + +++ + K R + +
Sbjct: 68 LAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127
Query: 358 NAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLYESMLSSVLFARDQWLKPGG 416
A V++ V D +++ + L LKPGG
Sbjct: 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGG 187
Query: 417 AIL 419
++
Sbjct: 188 HLV 190
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (108), Expect = 6e-06
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS--RVIAVEASEKMAAVATQIAKDNDFW 346
IL + G V++ G G+G +SLF ++A S RVI+ E + +A + K
Sbjct: 90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV 387
W E +N ++ + + I+ + D +
Sbjct: 150 WKLSHVEEWPDN---VDFIHKDISGAT--EDIKSLTFDAVA 185
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 45.5 bits (107), Expect = 6e-06
Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 18/160 (11%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS--RVIAVEASEKMAAVATQIAKDNDFW 346
I + +G ++D G G+G + A+A S +V A E E+ A +A
Sbjct: 95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI 154
Query: 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLV--SEWMGYCLLYESMLSSV 404
+I+ + V + ++ + + L + C + ++
Sbjct: 155 ERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETL 214
Query: 405 LFARD--------------QWLKPGGAILPDTATMFVAGF 430
++ + + P + +
Sbjct: 215 KKLQELPFIRIEVWESLFRPYKPVPERLRPVDRMVAHTAY 254
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWW 347
+ N + G V+D G G GIL+ + GA V A + A + +F
Sbjct: 41 IYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 98
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 41.7 bits (97), Expect = 5e-05
Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 29/154 (18%)
Query: 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345
R I+ K V +D+GCGTG ++ RV A++ + + + + +
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVT-LELAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL 405
+ + +++G E + +D+ V G L +L
Sbjct: 81 GDN-------------VTLMEGDAPEALC----KIPDIDIAVVGGSG------GELQEIL 117
Query: 406 FARDQWLKPGG-----AILPDTATMFVAGFGRGG 434
LKPGG AIL +T + G
Sbjct: 118 RIIKDKLKPGGRIIVTAILLETKFEAMECLRDLG 151
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.3 bits (99), Expect = 7e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFW 346
I+ + GA V++ G G+G L+L +A A +VI+ E A + A+ N
Sbjct: 88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA----EHARRNVSG 143
Query: 347 W 347
Sbjct: 144 C 144
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE 353
+ ++++G G + + + VEASE+ + A KD + +
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFED 75
Query: 354 GNINNAGKMEVVQGMVEEL 372
+ V+ ++E +
Sbjct: 76 AQLPRRYDNIVLTHVLEHI 94
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA 318
Y + + R + + ++ L + G ++DIG G + L +A +
Sbjct: 18 YLRNN--YAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS 75
Query: 319 GASRVIAVEASEKMAAVATQIAKDN--DFWWDR 349
+ + E + ++ F W
Sbjct: 76 HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSM 108
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 24/167 (14%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILE--NPSLMKGAVVMDIGCGTGILSLFAAQAG 319
+ ++ I+ ++I V + I+E + + +D+ CGTG L+
Sbjct: 2 CYNKFAH--IYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF 59
Query: 320 ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379
+ + E ++ + Q ++ I
Sbjct: 60 KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI--------------------SNLNIN 99
Query: 380 PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426
+ ++ L A LK GG + D + +
Sbjct: 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 29/155 (18%)
Query: 264 GSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRV 323
G + + M S + R A +V+D+ G G LSL A G ++V
Sbjct: 78 GIKYKLDVAKIMFSPANVKERVRMA----KVAKPDELVVDMFAGIGHLSLPIAVYGKAKV 133
Query: 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSV 383
IA+E + N +M + +
Sbjct: 134 IAIEKDPYTFKFLVENIHLNKVE-------------DRMSAYNMDNRDF-----PGENIA 175
Query: 384 DVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418
D ++ MGY + + L K G I
Sbjct: 176 DRIL---MGYVVRTHEFIPKAL----SIAKDGAII 203
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.8 bits (86), Expect = 0.002
Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 23/236 (9%)
Query: 262 YFGSYSSF--GIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG 319
+ + + I+R I + + I + + + V+D+ CGTGI +
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPT-LELAER 62
Query: 320 ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379
V+ ++ E+M VA + AK+ + +
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKI--------------------EFLQGDVLEIAF 102
Query: 380 PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPF 439
+ D + + E L + + LKPGG + D F G
Sbjct: 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQ 162
Query: 440 WENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSVRFHNYKFLRYM 495
M E + + + + ++ + + + +R +
Sbjct: 163 KGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPREVRLL 218
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 14/131 (10%), Positives = 27/131 (20%), Gaps = 2/131 (1%)
Query: 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD 348
+ G V CG + + A G V+ VE SE +
Sbjct: 37 LDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEP 95
Query: 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR 408
+ G + + + ++ + +
Sbjct: 96 ITEIPGTKVFKSSSGNISLYCCSI-FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTM 154
Query: 409 DQWLKPGGAIL 419
L L
Sbjct: 155 FSLLGKKFQYL 165
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 36.0 bits (82), Expect = 0.004
Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 18/125 (14%)
Query: 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE 353
G V+D+ G+G L++ A G S + VE + K D
Sbjct: 11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKA----------QAIIQDNIIMT 60
Query: 354 GNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLK 413
N +++ + D++ + + + A L
Sbjct: 61 KAENRFTLLKMEAERA------IDCLTGRFDLVFLDPPYAKETIVATIE--ALAAKNLLS 112
Query: 414 PGGAI 418
+
Sbjct: 113 EQVMV 117
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| d1wira_ | 121 | Protein arginine N-methyltransferase 3 {Mouse (Mus | 99.97 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.96 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.96 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.96 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.76 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.75 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.74 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.73 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.73 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.68 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.68 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.66 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.65 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.65 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.63 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.63 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.63 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.63 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.62 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.61 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.6 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.6 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.6 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.6 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.59 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.56 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.55 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.53 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.5 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.49 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.49 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.47 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.47 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.47 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.47 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.46 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.45 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.43 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.43 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.43 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.41 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.39 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.38 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.36 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.36 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.36 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.35 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.35 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.34 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.32 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.31 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.31 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.3 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.3 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.29 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.28 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.26 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.23 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.2 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.19 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.18 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.08 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.07 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.0 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.98 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.94 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.88 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.84 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.76 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.75 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.73 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.67 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.65 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.65 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.6 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.56 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.54 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.52 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.51 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.51 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.47 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.46 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.38 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.33 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.32 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.28 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.27 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.25 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.25 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.2 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.15 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.06 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.99 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.97 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.89 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.69 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.51 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.48 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.36 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.35 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.33 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.26 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.97 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.93 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.92 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.83 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.78 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.76 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.76 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.74 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.63 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.46 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.24 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.93 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.7 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.63 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.62 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.24 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.96 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.85 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.75 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.7 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.59 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.51 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.41 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.39 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.28 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.28 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 94.21 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.19 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.25 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.65 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.64 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 92.46 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 92.19 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.93 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.83 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 91.78 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 91.61 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.55 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 91.42 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.31 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.82 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.75 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 90.27 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.25 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.21 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.05 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 89.95 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.94 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.8 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 89.51 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 89.49 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 89.22 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.22 | |
| d2adra2 | 31 | ADR1 {Synthetic, based on Saccharomyces cerevisiae | 89.16 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 88.9 | |
| d1x5wa2 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 88.81 | |
| d1klra_ | 30 | ZFY {Human (Homo sapiens) [TaxId: 9606]} | 88.65 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.52 | |
| d2ct1a2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 88.02 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.57 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.2 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.19 | |
| d2dlqa1 | 26 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 87.18 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 87.01 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 86.91 | |
| d2csha1 | 53 | Zinc finger protein 297b {Human (Homo sapiens) [Ta | 86.79 | |
| d1bboa2 | 29 | Enhancer binding protein {Human (Homo sapiens) [Ta | 86.78 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.73 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 86.0 | |
| d1x6ha2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 85.97 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 85.78 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 85.36 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 85.1 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 85.09 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.85 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 84.46 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 83.94 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 83.87 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 83.49 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 83.33 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 83.17 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 83.1 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 82.77 | |
| d2adra1 | 29 | ADR1 {Synthetic, based on Saccharomyces cerevisiae | 82.66 | |
| d2epsa1 | 39 | PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | 82.48 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.32 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 82.11 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 81.99 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 81.94 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.54 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 81.45 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 81.44 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 81.4 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.37 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 81.13 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 80.85 | |
| d2dmda2 | 26 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 80.42 | |
| d1a1ia2 | 28 | ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | 80.09 |
| >d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: variant C2H2 finger domain: Protein arginine N-methyltransferase 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5.9e-33 Score=234.49 Aligned_cols=93 Identities=35% Similarity=0.726 Sum_probs=79.4
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
..+++||||+++|++++.+++||+++|+|||..++++++||||++||||||||++++.+. .+.
T Consensus 13 ~~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~~~~~LDfY~~IKLINYIR~~~~~~~------------~~~----- 75 (121)
T d1wira_ 13 RQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTVE------------YMN----- 75 (121)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCCHHHHHHHHHHHHHTCCCHH------------HHH-----
T ss_pred cccceecccCCccCCHHHHHHHHHHhhCCCHHHHHHHcCCCccceEEEEeeeecccCchh------------hcc-----
Confidence 568999999999999999999999999999999999999999999999999999976432 111
Q ss_pred hccCcccCCCCCCCCcccccccCccccc-cccCC
Q 010913 124 AYNLKETKLRWDKEKYLKPFMQDDKLLY-SFGED 156 (497)
Q Consensus 124 ~~~~~~~~~~w~~d~yl~Pv~e~D~lL~-~~d~~ 156 (497)
+.. .+.+|++|+||+||||||+||+ .+|+.
T Consensus 76 --~~~-~~~~wddd~YL~PvledD~LL~~dlddl 106 (121)
T d1wira_ 76 --SIY-NPVPWEKDEYLKPVLEDDLLLQFDVEDL 106 (121)
T ss_dssp --SCC-SSCTTCCHHHHSCSSSSCHHHHSCGGGG
T ss_pred --ccc-ccccCCCcccccccCCCCcceeeecccc
Confidence 222 2568999999999999999994 45543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.8e-31 Score=263.46 Aligned_cols=202 Identities=44% Similarity=0.796 Sum_probs=180.4
Q ss_pred cccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 010913 260 ESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 260 ~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~ 339 (497)
+.||++|+++++|.+|++|.+|+..|+++|..+....+|++|||||||+|.+++.+|++|+++|+|+|.|+ ++..|+++
T Consensus 1 d~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~ 79 (328)
T d1g6q1_ 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKEL 79 (328)
T ss_dssp CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHH
T ss_pred CCcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHH
Confidence 36999999999999999999999999999998877789999999999999999999999999999999997 67789999
Q ss_pred HHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 340 AKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 340 ~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.+++ .++++++++++.++. ++..+||+|+++++++++.++.++..++.++.|+|||||+++
T Consensus 80 ~~~~~~-------------~~~i~~i~~~~~~l~----~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 80 VELNGF-------------SDKITLLRGKLEDVH----LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp HHHTTC-------------TTTEEEEESCTTTSC----CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred HHHhCc-------------cccceEEEeehhhcc----CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 999987 368999999999874 778999999999999999999999999999999999999999
Q ss_pred ccCceeEEeeecCCC---CCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHh
Q 010913 420 PDTATMFVAGFGRGG---TSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVS 483 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~---~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~ 483 (497)
|+.++++..++.... ....+|.++|||+++.+.... ...|.+..+.+..+++.|..+..+
T Consensus 143 P~~~~~~~~~v~~~~l~~~~~~~~~~~~G~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 205 (328)
T d1g6q1_ 143 PDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLV----LHEPIVDTVERNNVNTTSDKLIEF 205 (328)
T ss_dssp SCEEEEEEEEECCHHHHHHHHHHTTCBTTBCCTTHHHHH----TTSCEEECCCGGGBCBCCEEEEEE
T ss_pred eeecceeeecccCHHHHHHhccccccccccccchhhhhh----ccCcEEEEecCceeecCceeEEEe
Confidence 999999999987542 334589999999999987655 345789999999999888876544
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=5.9e-30 Score=256.06 Aligned_cols=198 Identities=47% Similarity=0.876 Sum_probs=176.7
Q ss_pred ccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCC
Q 010913 265 SYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND 344 (497)
Q Consensus 265 ~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~g 344 (497)
+|+++++|++|++|.+|+..|+++|..+..+.+|++|||||||+|.+++.+|++|+++|+|||.|+. ...|+++++.++
T Consensus 1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~ 79 (316)
T d1oria_ 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANK 79 (316)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTT
T ss_pred CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhC
Confidence 6889999999999999999999999988777899999999999999999999999989999999985 467888888898
Q ss_pred CCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 345 l~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+ .++|.++++++.++. ++.++||+|+++++++++.++..+..++.++.++|||||.++|..++
T Consensus 80 ~-------------~~~v~~~~~~~~~~~----~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~ 142 (316)
T d1oria_ 80 L-------------DHVVTIIKGKVEEVE----LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRAT 142 (316)
T ss_dssp C-------------TTTEEEEESCTTTCC----CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred C-------------ccccceEeccHHHcc----cccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEE
Confidence 8 368999999999974 77889999999999999999999999999999999999999999999
Q ss_pred eEEeeecCCC---CCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHhh
Q 010913 425 MFVAGFGRGG---TSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSV 484 (497)
Q Consensus 425 ~~~~~~~~~~---~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~ 484 (497)
++.+++.... ....+|.+++|++|+++...... .|.+....+..++++|..+..+.
T Consensus 143 ~~~~~v~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~----~~~v~~~~~~~~ls~p~~~~~~d 201 (316)
T d1oria_ 143 LYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIK----EPLVDVVDPKQLVTNACLIKEVD 201 (316)
T ss_dssp EEEEEECCHHHHHHHTTTTTCBTTBCCHHHHHHHHT----SCEEECCCGGGEEEEEEEEEEEE
T ss_pred EEEEEecCHHHHhhhcccccccccccchhhhhhhcc----ccEEEEecCceEeeCCEEeEEEc
Confidence 9999986542 34578999999999998876544 47899999999999998877654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.4e-29 Score=251.05 Aligned_cols=200 Identities=43% Similarity=0.837 Sum_probs=177.9
Q ss_pred ccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh
Q 010913 263 FGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (497)
Q Consensus 263 f~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~ 342 (497)
|++|+.+++|+.|++|..|++.|+++|..+....+|++|||||||+|.+++.+|++|+++|+|+|.|+.++ .|++.+..
T Consensus 1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~ 79 (311)
T d2fyta1 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRL 79 (311)
T ss_dssp CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHH
T ss_pred CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHH
Confidence 78999999999999999999999999999988899999999999999999999999999999999999876 46777777
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 343 ~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++ .+++.++++++.++. ++..+||+|+|+++++++.++..+..++.++.++|||||.++|..
T Consensus 80 ~~~-------------~~~i~~~~~~~~~l~----~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~ 142 (311)
T d2fyta1 80 NKL-------------EDTITLIKGKIEEVH----LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDI 142 (311)
T ss_dssp TTC-------------TTTEEEEESCTTTSC----CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCE
T ss_pred hCC-------------CccceEEEeeHHHhc----CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccc
Confidence 776 368999999999974 677899999999999999999999999999999999999999999
Q ss_pred ceeEEeeecCCC---CCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHhh
Q 010913 423 ATMFVAGFGRGG---TSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSV 484 (497)
Q Consensus 423 ~~~~~~~~~~~~---~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~ 484 (497)
.+++..++.... ....+|.+++|++++.+.+.... .|.+..+++..++++|..+..+.
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~G~d~~~~~~~~~~----~~~~~~~~~~~~ls~p~~~~~~d 203 (311)
T d2fyta1 143 CTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIP----EAVVEVLDPKTLISEPCGIKHID 203 (311)
T ss_dssp EEEEEEEECCHHHHHHHTGGGGCBTTBCCGGGHHHHTT----BCEEECCCGGGBCBCCEEEEEEE
T ss_pred cceEEEEecCHHHHHhhhccccccccccccchhhcccc----ccEEEecChhheecCCEeEEEec
Confidence 999999886432 34568999999999999866544 46899999999999998776654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=5.7e-19 Score=168.71 Aligned_cols=119 Identities=28% Similarity=0.433 Sum_probs=99.9
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+...++......++++|||||||||.++..+++.|+ +|+|||+|+.|++.|++++...++ ++++
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~---------------~i~~ 92 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL---------------KIEF 92 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---------------CCEE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc---------------cchh
Confidence 444455555567788999999999999999999998 899999999999999999988765 7999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+++|++++. + +++||+|+|.+....+.+.+++..+|..+.++|||||+++++..+
T Consensus 93 ~~~d~~~l~----~-~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 93 LQGDVLEIA----F-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EESCGGGCC----C-CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eehhhhhcc----c-ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 999999984 4 468999998654444556678889999999999999999976544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=2e-19 Score=170.76 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=101.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.+.+...+.+|.+|||||||||.++..+++.|. +|+|||+|+.|++.|++++..+++ +++.+
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~--------------~~~~~ 68 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV--------------ENVRF 68 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC--------------CSEEE
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccc--------------ccccc
Confidence 345677777889999999999999999999999986 899999999999999999988886 57999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+++|++++ +++.++||+|+|.. ++.+.+++..+|.++.++|||||.+++
T Consensus 69 ~~~d~~~~----~~~~~~fD~v~~~~---~l~~~~d~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 69 QQGTAESL----PFPDDSFDIITCRY---AAHHFSDVRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp EECBTTBC----CSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccc----cccccccceeeeec---eeecccCHHHHHHHHHHeeCCCcEEEE
Confidence 99999987 58899999999754 666667899999999999999999875
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.76 E-value=7.3e-19 Score=165.83 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=97.9
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
+++..++.++.+|||||||+|.++..+++.|+ +|+|+|+|+.|++.|++++...+. +++.+++++
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~--------------~~i~~~~~d 71 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH--------------QQVEYVQGD 71 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC--------------CSEEEEECC
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccc--------------ccccccccc
Confidence 44556788999999999999999999999987 899999999999999999988886 689999999
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++ +++.++||+|+|.. ++.|..++..+|.++.++|||||++++.
T Consensus 72 ~~~l----~~~~~~fD~v~~~~---~l~~~~d~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 72 AEQM----PFTDERFHIVTCRI---AAHHFPNPASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp C-CC----CSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccc----cccccccccccccc---cccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9987 58889999999754 6667788999999999999999998853
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2.9e-18 Score=163.83 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=102.7
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
+....+.+...+.+.+|.+|||||||+|.++..+++. |+ +|+|||+|+.|++.|++++...|+ .+
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl-------------~~ 83 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGV-------------SE 83 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTC-------------TT
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhc-------------cc
Confidence 3345566777888999999999999999999999887 65 999999999999999999999998 35
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+|+++.+|+.++ +++++||+|+|.. ++.|..++..++.++.++|||||++++..
T Consensus 84 ~v~~~~~d~~~~-----~~~~~fD~v~~~~---~~~~~~d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 84 RVHFIHNDAAGY-----VANEKCDVAACVG---ATWIAGGFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp TEEEEESCCTTC-----CCSSCEEEEEEES---CGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred cchhhhhHHhhc-----cccCceeEEEEEe---hhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence 899999999886 4678999999865 45566688999999999999999998653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.74 E-value=5.3e-18 Score=165.47 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=102.7
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
+.+...+.....+.++.+|||||||+|.++..+++. |+ +|+|||+|+.+++.|+++....|+ .++
T Consensus 53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl-------------~~~ 118 (282)
T d2o57a1 53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGL-------------ADN 118 (282)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTC-------------TTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccc-------------ccc
Confidence 345556667778899999999999999999999987 66 899999999999999999998888 368
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++++++++++ |+++++||+|+|.. ++.|.+++..+|.++.++|||||.+++.
T Consensus 119 v~~~~~d~~~l----~~~~~sfD~V~~~~---~l~h~~d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 119 ITVKYGSFLEI----PCEDNSYDFIWSQD---AFLHSPDKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp EEEEECCTTSC----SSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccccc----cccccccchhhccc---hhhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999987 58889999999765 5556678899999999999999999854
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.73 E-value=6.1e-18 Score=161.50 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++++|||||||+|.++..++++|. +|+|||+|+.|++.|++++...++ +++++++|+.++.
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~---------------~v~~~~~d~~~~~-- 97 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL---------------KPRLACQDISNLN-- 97 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC---------------CCEEECCCGGGCC--
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc---------------cceeeccchhhhc--
Confidence 4568999999999999999999988 999999999999999999988875 7999999999873
Q ss_pred cCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+ +++||+|+|.. ....+.+..++..+|..+.++|||||.++++.
T Consensus 98 --~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 98 --I-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp --C-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --c-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 3 56899999842 33345677889999999999999999998643
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=1.7e-17 Score=155.25 Aligned_cols=117 Identities=22% Similarity=0.307 Sum_probs=95.6
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
..+...+.+.. .++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|++++...+. .+
T Consensus 25 ~~~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~---------------~~ 86 (226)
T d1ve3a1 25 ETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES---------------NV 86 (226)
T ss_dssp HHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---------------CC
T ss_pred HHHHHHHHHhc--CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc---------------cc
Confidence 34445555543 5778999999999999999999987 899999999999999999877764 67
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++.+|+.++ +++.++||+|+|..+..++ ...++..+|.++.++|||||.+++..
T Consensus 87 ~~~~~d~~~l----~~~~~~fD~I~~~~~l~~~-~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 87 EFIVGDARKL----SFEDKTFDYVIFIDSIVHF-EPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp EEEECCTTSC----CSCTTCEEEEEEESCGGGC-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccc----cccCcCceEEEEecchhhC-ChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 8899999987 4788999999986533322 23478889999999999999988554
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.68 E-value=6.9e-17 Score=154.92 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=93.4
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++++|||||||+|..+..+++.|..+|+|||+|+.|++.|++++...+. ..++.++++|+....
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-------------~~~v~f~~~D~~~~~- 87 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-------------RFKVFFRAQDSYGRH- 87 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-------------SSEEEEEESCTTTSC-
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-------------CcceEEEEcchhhhc-
Confidence 468899999999999999999999888999999999999999999877665 358999999987653
Q ss_pred ccCCCCCceeEEEeccc-cccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWM-GYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~-~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
....++||+|+|... .|++..+..+..++..+.++|||||+++..+
T Consensus 88 --~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 88 --MDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp --CCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --ccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 124678999998764 3334456778899999999999999998643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=2.2e-17 Score=156.50 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.++..+++.|+ +|+|||+|+.|++.|+++. ...++.++++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~--------------------~~~~~~~~~~~l--- 96 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG--------------------VKNVVEAKAEDL--- 96 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT--------------------CSCEEECCTTSC---
T ss_pred CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc--------------------cccccccccccc---
Confidence 4778999999999999999999988 8999999999999998762 123677899887
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+++.++||+|+|.. .++.|.+++..+|.++.++|||||+++++..+
T Consensus 97 -~~~~~~fD~ii~~~--~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 97 -PFPSGAFEAVLALG--DVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp -CSCTTCEEEEEECS--SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -ccccccccceeeec--chhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 58889999999743 24455578889999999999999999976543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.66 E-value=1.9e-16 Score=144.97 Aligned_cols=114 Identities=24% Similarity=0.289 Sum_probs=96.8
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
..+..++....+.+|.+|||+|||+|.+++.+|+.+. +|+|+|+++.+++.|+++++.+|+ .++++
T Consensus 20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl-------------~~~v~ 85 (186)
T d1l3ia_ 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGL-------------GDNVT 85 (186)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTC-------------CTTEE
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCC-------------CcceE
Confidence 4566677777888999999999999999999998755 999999999999999999999998 36999
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++++.+.. .+...||+|++... . .....++..+.++|||||++++.
T Consensus 86 ~~~gda~~~~----~~~~~~D~v~~~~~---~---~~~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 86 LMEGDAPEAL----CKIPDIDIAVVGGS---G---GELQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp EEESCHHHHH----TTSCCEEEEEESCC---T---TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEECchhhcc----cccCCcCEEEEeCc---c---ccchHHHHHHHHHhCcCCEEEEE
Confidence 9999998874 56689999997542 1 23467899999999999998843
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.65 E-value=3e-16 Score=144.84 Aligned_cols=105 Identities=21% Similarity=0.265 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++++|||||||+|..+..++++|. +|+|||+|+.+++.|++++...++ +++.+..+|+..+.
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~--------------~~~~~~~~d~~~~~-- 91 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGL--------------DNLQTDLVDLNTLT-- 91 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--------------TTEEEEECCTTTCC--
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccc--------------cchhhhheeccccc--
Confidence 4556999999999999999999998 899999999999999999988887 57999999998873
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++||+|++..+.+++ .......++.++.++|+|||++++.
T Consensus 92 ---~~~~fD~I~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 92 ---FDGEYDFILSTVVMMFL-EAQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp ---CCCCEEEEEEESCGGGS-CTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ---ccccccEEEEeeeeecC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 46889999986644333 3456788999999999999998853
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.9e-16 Score=148.78 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=89.8
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+...++.+|||||||+|.++..+++.+..+|+|||+|+.|++.|++++...+. .+++++++|++++
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~--------------~~~~f~~~d~~~~ 121 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--------------RVRNYFCCGLQDF 121 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--------------GEEEEEECCGGGC
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc--------------ccccccccccccc
Confidence 34566789999999999999988777666999999999999999999877664 5789999999997
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
. ++.++||+|++..+.+++ ..+.+..++..+.++|||||.+++.
T Consensus 122 ~----~~~~~fD~I~~~~~l~h~-~~~~~~~~l~~i~~~Lk~~G~~~i~ 165 (222)
T d2ex4a1 122 T----PEPDSYDVIWIQWVIGHL-TDQHLAEFLRRCKGSLRPNGIIVIK 165 (222)
T ss_dssp C----CCSSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c----cccccccccccccccccc-hhhhhhhHHHHHHHhcCCcceEEEE
Confidence 4 678999999986533322 2234568999999999999999854
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=1.5e-15 Score=147.80 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=98.7
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.++..+.+.+|.+|||||||+|.++..+++. |+ +|+|||+|+.+++.|+++++..|+. .++
T Consensus 39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~-------------~~~ 104 (280)
T d2fk8a1 39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTN-------------RSR 104 (280)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCS-------------SCE
T ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccc-------------cch
Confidence 34566788889999999999999999999999987 77 9999999999999999999999883 578
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.+...|..++ +++||.|+|..|...+ .......++..+.++|||||++++.+
T Consensus 105 ~~~~~d~~~~-------~~~fD~i~si~~~eh~-~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 105 QVLLQGWEDF-------AEPVDRIVSIEAFEHF-GHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EEEESCGGGC-------CCCCSEEEEESCGGGT-CGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhhhhhhh-------ccchhhhhHhhHHHHh-hhhhHHHHHHHHHhccCCCceEEEEE
Confidence 8888776653 4689999998765443 33567899999999999999998643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.63 E-value=1e-15 Score=140.92 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=95.3
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.+.++..+.+.++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++++..+++.. .+++++
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~------------~~i~~~ 107 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDN------------YDIRVV 107 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTT------------SCEEEE
T ss_pred HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCcc------------ceEEEE
Confidence 34566667778899999999999999999998765 99999999999999999999998742 468999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+|+.+. +++++||+|+++.+.+. .......++..+.++|||||.+++
T Consensus 108 ~~d~~~~-----~~~~~fD~Ii~~~p~~~--~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 108 HSDLYEN-----VKDRKYNKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp ECSTTTT-----CTTSCEEEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred Ecchhhh-----hccCCceEEEEcccEEe--cchhhhhHHHHHHHhcCcCcEEEE
Confidence 9998763 56789999998875332 233467889999999999999873
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=3.3e-16 Score=153.35 Aligned_cols=133 Identities=21% Similarity=0.211 Sum_probs=95.2
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
..|...+.+.+...+...++++|||+|||+|.++..+++.|+ +|+|||+|+.|++.|+++....+... .
T Consensus 38 ~~r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~----------~ 106 (292)
T d1xvaa_ 38 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEP----------A 106 (292)
T ss_dssp CCBCHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSH----------H
T ss_pred hhhHHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhccccc----------c
Confidence 445666666666655556778999999999999999999998 89999999999999999887765410 0
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEecc--cccccc---ChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEW--MGYCLL---YESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~--~~~~l~---~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.....+...+...+...++ ...+||+|++.+ +.|... ...++..+|.++.++|||||+|+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 107 FDKWVIEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HHTCEEEECCGGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cceeeeeeccccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 0123455555544432222 357899999743 222211 134678899999999999999997543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=5e-16 Score=148.95 Aligned_cols=109 Identities=24% Similarity=0.377 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....+.+... ..+|++|||+|||+|.+++.+++.|+ +|+|+|+|+.+++.|+++++.|++ ++
T Consensus 108 ~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~---------------~~ 169 (254)
T d2nxca1 108 RLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV---------------RP 169 (254)
T ss_dssp HHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC---------------CC
T ss_pred hHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC---------------ce
Confidence 3344445443 36899999999999999999999987 899999999999999999999987 56
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++++++.+. ++.++||+|+++.. ...+..++..+.++|||||++++
T Consensus 170 ~~~~~d~~~~-----~~~~~fD~V~ani~------~~~l~~l~~~~~~~LkpGG~lil 216 (254)
T d2nxca1 170 RFLEGSLEAA-----LPFGPFDLLVANLY------AELHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp EEEESCHHHH-----GGGCCEEEEEEECC------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEecccccc-----ccccccchhhhccc------cccHHHHHHHHHHhcCCCcEEEE
Confidence 7899998765 45679999997642 23467788899999999999984
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.62 E-value=2.9e-16 Score=143.25 Aligned_cols=123 Identities=15% Similarity=0.056 Sum_probs=91.2
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+.+.+|.+|||+|||+|..+..+|++|. +|+|||+|+.|++.|+++++..+... ............++++.+++.
T Consensus 14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~ 90 (201)
T d1pjza_ 14 SSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHIT--SQGDFKVYAAPGIEIWCGDFF 90 (201)
T ss_dssp HHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEE--EETTEEEEECSSSEEEEECCS
T ss_pred HHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchh--hhhhhhhccccccceeccccc
Confidence 334678999999999999999999999998 99999999999999999885543210 000000111235678888887
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++. +.....||+|++..+..+ ........++..+.++|||||.+++
T Consensus 91 ~l~---~~~~~~~D~i~~~~~l~~-l~~~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 91 ALT---ARDIGHCAAFYDRAAMIA-LPADMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp SST---HHHHHSEEEEEEESCGGG-SCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred ccc---cccccceeEEEEEeeeEe-cchhhhHHHHHHHHHhcCCCcEEEE
Confidence 764 234568999998754433 3445678899999999999999874
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=3.5e-15 Score=145.83 Aligned_cols=120 Identities=23% Similarity=0.159 Sum_probs=99.3
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
....+.+...+.+.+|.+|||||||.|.++..+|+. |+ +|+||++|+.+++.|++++...|+. .+
T Consensus 47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~-------------~~ 112 (291)
T d1kpia_ 47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSP-------------RR 112 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCS-------------SC
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccc-------------hh
Confidence 345667888889999999999999999999998876 87 9999999999999999999999883 57
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccC------hhhHHHHHHHHhccccCCcEEeccCc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY------ESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~------~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+...|... ++++||.|+|..|..++.. ......++..+.++|||||++++.+.
T Consensus 113 v~~~~~d~~~-------~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 113 KEVRIQGWEE-------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp EEEEECCGGG-------CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred hhhhhhcccc-------cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 8888877643 4678999999775544322 24578999999999999999985543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=3.8e-15 Score=145.19 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
....+.+...+.+.+|.+|||||||.|.+++.+|+. |+ +|+||.+|+..++.|++++...|+. ++
T Consensus 48 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~-------------~~ 113 (285)
T d1kpga_ 48 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENL-------------RS 113 (285)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCC-------------SC
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhh-------------hh
Confidence 355677888899999999999999999999998887 87 9999999999999999999888873 68
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++..+|..++ +++||.|+|.+|...+.+ .....++.++.++|||||.+++.+
T Consensus 114 v~~~~~d~~~~-------~~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 114 KRVLLAGWEQF-------DEPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp EEEEESCGGGC-------CCCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hHHHHhhhhcc-------cccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEE
Confidence 99999998764 368999999776544332 456789999999999999998544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.60 E-value=2e-15 Score=141.90 Aligned_cols=107 Identities=16% Similarity=0.242 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..++.+|||||||||.++..+++. +..+|+|||+|+.|++.|++++...+. ..++.+..+++.+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-------------~~~~~~~~~d~~~ 103 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-------------EIPVEILCNDIRH 103 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-------------SSCEEEECSCTTT
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-------------cchhhhccchhhc
Confidence 467899999999999999999974 234999999999999999999887665 3578888888866
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ +...+|+|++..+.+ ..+..++..+|..++++|||||.+++.
T Consensus 104 ~------~~~~~d~i~~~~~l~-~~~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 104 V------EIKNASMVILNFTLQ-FLPPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp C------CCCSEEEEEEESCGG-GSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred c------ccccceeeEEeeecc-ccChhhHHHHHHHHHHhCCCCceeecc
Confidence 4 457889999765332 335568889999999999999999854
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.60 E-value=5.7e-16 Score=145.87 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++++|||||||+|.++..+++.|. +|+|||+|+.+++.|+++. ..++.++.++++++.
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~------------------~~~~~~~~~~~~~~~-- 77 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL------------------KDGITYIHSRFEDAQ-- 77 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS------------------CSCEEEEESCGGGCC--
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc------------------ccccccccccccccc--
Confidence 5678999999999999999999887 8999999999999998763 246899999998873
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHh-ccccCCcEEeccCce
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD-QWLKPGGAILPDTAT 424 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~-r~LkpgG~li~~~~~ 424 (497)
.+++||+|++.. ++.|..++..+|.++. ++|||||.+++..++
T Consensus 78 ---~~~~fD~I~~~~---vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 78 ---LPRRYDNIVLTH---VLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp ---CSSCEEEEEEES---CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ---cccccccccccc---eeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 368999999644 6777788899999987 899999999965543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.60 E-value=2e-15 Score=147.09 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=96.4
Q ss_pred HHHHHHHHhCC-CCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 283 DSYRQAILENP-SLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 283 ~~y~~~i~~~~-~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
+.|.+++.... .+.++.+|||||||+|.++..+++. +. .+|+|+|+|+.+++.|++++...++
T Consensus 12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-------------- 77 (281)
T d2gh1a1 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-------------- 77 (281)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--------------
T ss_pred HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--------------
Confidence 34566665543 5678899999999999999999986 32 4899999999999999999887764
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++++++|+.++. + +++||+|+|.. ++.|.+++..+|.++.++|||||.+++..
T Consensus 78 -~~~f~~~d~~~~~----~-~~~fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 78 -DSEFLEGDATEIE----L-NDKYDIAICHA---FLLHMTTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp -EEEEEESCTTTCC----C-SSCEEEEEEES---CGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -ccccccccccccc----c-cCCceEEEEeh---hhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 7999999998863 4 46899999765 66666788999999999999999988544
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.59 E-value=1.8e-15 Score=145.29 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=90.5
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.++......++.+|||+|||+|.++..++..+..+|+|||+|+.|++.|++++... ++++++++
T Consensus 84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~----------------~~~~~~~~ 147 (254)
T d1xtpa_ 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----------------PVGKFILA 147 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----------------SEEEEEES
T ss_pred HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc----------------ccceeEEc
Confidence 34455556678899999999999999888765669999999999999999876432 46899999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++++. +++++||+|++.++.+++ ...++..+|.++.++|||||.+++.
T Consensus 148 d~~~~~----~~~~~fD~I~~~~vl~hl-~d~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 148 SMETAT----LPPNTYDLIVIQWTAIYL-TDADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp CGGGCC----CCSSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccc----cCCCccceEEeecccccc-chhhhHHHHHHHHHhcCCCcEEEEE
Confidence 999874 678899999987743332 2234668999999999999999853
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=5.4e-16 Score=143.77 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..++ +++|||+|+.|++.|+++ ++.+++++++++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~---------------------~~~~~~~d~~~l--- 85 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR---------------------GVFVLKGTAENL--- 85 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT---------------------TCEEEECBTTBC---
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc---------------------cccccccccccc---
Confidence 456789999999999887763 579999999999988753 578999999987
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEe---eecCCCCCCCccccccCccccccc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA---GFGRGGTSLPFWENVYGFTMSCVG 452 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~---~~~~~~~~~~fw~~v~g~~~~~~~ 452 (497)
++++++||+|+|.. ++.|.+++..+|.++.++|+|||.+++...+.... ..........++.+...+....+.
T Consensus 86 -~~~~~~fD~I~~~~---~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 161 (208)
T d1vlma_ 86 -PLKDESFDFALMVT---TICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELM 161 (208)
T ss_dssp -CSCTTCEEEEEEES---CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHH
T ss_pred -cccccccccccccc---ccccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHH
Confidence 47889999999754 66677789999999999999999998654432110 011111111122333345566677
Q ss_pred hHHHhhhcC
Q 010913 453 REVVQDAAG 461 (497)
Q Consensus 453 ~~~~~~~~~ 461 (497)
..+...+|.
T Consensus 162 ~~l~~~Gf~ 170 (208)
T d1vlma_ 162 DLMRKAGFE 170 (208)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHcCCe
Confidence 777777754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.3e-15 Score=139.00 Aligned_cols=132 Identities=13% Similarity=-0.042 Sum_probs=96.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCC---CCCCCCCCCCCc
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDR---PQSEGNINNAGK 361 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~---~~~~~~~~~~~~ 361 (497)
+.+.+.....+.++.+|||+|||+|..+..+|+.|+ +|+|||+|+.+++.|++.....+..... ...........+
T Consensus 33 l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (229)
T d2bzga1 33 LKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN 111 (229)
T ss_dssp HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence 334444444567889999999999999999999999 9999999999999998876432210000 000111122357
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++++|+.++. +...+.||+|+...+.++ .+......++..+.++|||||.+++.
T Consensus 112 v~~~~~d~~~l~---~~~~~~fd~i~~~~~l~~-~~~~~r~~~~~~~~~~LkpgG~~~l~ 167 (229)
T d2bzga1 112 ISLYCCSIFDLP---RTNIGKFDMIWDRGALVA-INPGDRKCYADTMFSLLGKKFQYLLC 167 (229)
T ss_dssp EEEEESCGGGGG---GSCCCCEEEEEESSSTTT-SCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEcchhhcc---ccccCceeEEEEEEEEEe-ccchhhHHHHHHHHhhcCCcceEEEE
Confidence 999999998885 456789999998754433 34567888999999999999998743
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=8.7e-15 Score=138.18 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||||||+|..+..+++.+..+|+|||+|+.+++.|++++...+ .++.++.+++..+..
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~~~- 115 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---------------HKVIPLKGLWEDVAP- 115 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---------------SEEEEEESCHHHHGG-
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc---------------ccccccccccccccc-
Confidence 5789999999999999999999865689999999999999999987665 378888888877642
Q ss_pred cCCCCCceeEEEecc--ccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEW--MGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~--~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+++.++||+|+... ..+.+.+..++..++.++.|+|||||++++
T Consensus 116 -~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 116 -TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp -GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred -ccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 46788999998643 344566777889999999999999999874
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.53 E-value=1e-14 Score=139.18 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=89.3
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..|+..+.+.+|.+|||+|||+|.++..+|++ | ..+|+++|.++.+++.|+++++..+. ..++++
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-------------~~nv~~ 141 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-------------IGNVRT 141 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-------------CTTEEE
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-------------CCceEE
Confidence 34667788999999999999999999999987 4 45999999999999999999987654 268999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..+|+.+. ++...||+|+... .++..++..+.++|||||+++...+
T Consensus 142 ~~~Di~~~-----~~~~~fD~V~ld~--------p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 142 SRSDIADF-----ISDQMYDAVIADI--------PDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp ECSCTTTC-----CCSCCEEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred EEeeeecc-----cccceeeeeeecC--------CchHHHHHHHHHhcCCCceEEEEeC
Confidence 99999875 5678999999642 2445688999999999999985433
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.50 E-value=1.7e-14 Score=127.48 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+|||||.+++.++.+|+++|++||.++.+++.+++++..+++. ++++++++|+..+.
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~-------------~~~~ii~~D~~~~l-- 77 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-------------NRFTLLKMEAERAI-- 77 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-------------GGEEEECSCHHHHH--
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc-------------cchhhhcccccccc--
Confidence 579999999999999999999999999999999999999999999999873 57999999998863
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHH--hccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~--~r~LkpgG~li~~ 421 (497)
....++||+|++.++.. .......+..+ .++|+|||.+++.
T Consensus 78 -~~~~~~fDiIf~DPPy~----~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 78 -DCLTGRFDLVFLDPPYA----KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp -HHBCSCEEEEEECCSSH----HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -cccccccceeEechhhc----cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 34568899999886422 22334455544 4689999999864
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=3.8e-14 Score=140.64 Aligned_cols=125 Identities=26% Similarity=0.262 Sum_probs=97.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+..+... +.+|++|||+|||+|.+++.+++.|+++|+++|+|+.+++.|+++++.||+. +++++
T Consensus 135 ~r~~~~~~--~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~-------------~~~~~ 199 (324)
T d2as0a2 135 NRLALEKW--VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-------------DRMKF 199 (324)
T ss_dssp HHHHHGGG--CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-------------GGEEE
T ss_pred HHHHHHhh--cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC-------------cccee
Confidence 34444333 3579999999999999999999999989999999999999999999999983 58999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccC------hhhHHHHHHHHhccccCCcEEeccCce
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY------ESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~------~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+++|+.+....++....+||+|++.++...... ......++..+.++|+|||+|+..+|+
T Consensus 200 ~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 200 IVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred eechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999987754323345678999999865332211 123355788889999999999966654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=7.3e-14 Score=129.94 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=89.6
Q ss_pred HHHHHHh--CCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 285 YRQAILE--NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 285 y~~~i~~--~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
....|+. .+.+.||.+|||+|||+|..+..+++. |.++|+|||+|+.|++.|+++++.. ++
T Consensus 42 laa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~----------------~n 105 (209)
T d1nt2a_ 42 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----------------NN 105 (209)
T ss_dssp HHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC----------------SS
T ss_pred HHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc----------------CC
Confidence 3445553 467889999999999999999999987 6679999999999999999998765 47
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.+++...... +.....+|+|++. +.+..+...++.++.++|||||.+++
T Consensus 106 i~~i~~d~~~~~~~-~~~~~~vd~v~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 106 IIPLLFDASKPWKY-SGIVEKVDLIYQD-----IAQKNQIEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp EEEECSCTTCGGGT-TTTCCCEEEEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEeeccCcccc-ccccceEEEEEec-----ccChhhHHHHHHHHHHHhccCCeEEE
Confidence 89999998876421 1223456666542 34556778899999999999999974
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=5.4e-14 Score=135.83 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||||||+|.++..+++.+ ..+|+|||+|+.|++.|+++. .++.++++|+.++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-------------------~~~~~~~~d~~~l-- 141 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------------------PQVTFCVASSHRL-- 141 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------------------TTSEEEECCTTSC--
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------------------ccccceeeehhhc--
Confidence 567899999999999999999984 349999999999999988762 4789999999987
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
|+++++||+|++.. .+.+ +.++.|+|||||.+++.++
T Consensus 142 --~~~~~sfD~v~~~~---~~~~-------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 142 --PFSDTSMDAIIRIY---APCK-------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp --SBCTTCEEEEEEES---CCCC-------HHHHHHHEEEEEEEEEEEE
T ss_pred --cCCCCCEEEEeecC---CHHH-------HHHHHHHhCCCcEEEEEee
Confidence 58899999999753 2222 4678899999999996543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.4e-14 Score=135.46 Aligned_cols=171 Identities=15% Similarity=0.107 Sum_probs=102.7
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC-----CCCC----------C
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE-----GNIN----------N 358 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~-----~~~~----------~ 358 (497)
...+|.+|||||||+|.++..+++.++.+|+|+|+|+.|++.|++++...+......... .... .
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 346789999999999999988888877789999999999999999987665311000000 0000 0
Q ss_pred CCce-EEEecchhhcccccCCCCCceeEEEeccccccc-cChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCC
Q 010913 359 AGKM-EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL-LYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTS 436 (497)
Q Consensus 359 ~~~i-~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l-~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~ 436 (497)
...+ ......+..-....+++.++||+|++..+.+.+ ....++..++..+.++|||||.+++....... .+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~-~~~~~--- 203 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP-SYMVG--- 203 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEEET---
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc-cceec---
Confidence 0000 111111111111124667899999975532222 23357889999999999999999853321100 00000
Q ss_pred CCccccccCccccccchHHHhhhcCCCeEeeeC
Q 010913 437 LPFWENVYGFTMSCVGREVVQDAAGIPIVDVVD 469 (497)
Q Consensus 437 ~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~ 469 (497)
...-..+.+....+...+..++|....++++.
T Consensus 204 -~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~ 235 (257)
T d2a14a1 204 -KREFSCVALEKGEVEQAVLDAGFDIEQLLHSP 235 (257)
T ss_dssp -TEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred -cccccccCCCHHHHHHHHHHCCCEEEEEEEec
Confidence 00112445678888888888887644444443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.47 E-value=1.2e-13 Score=130.41 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=88.5
Q ss_pred HHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 285 YRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 285 y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
...+|+. ..++.+|.+|||+|||+|..+..+|+. +.+.|+|||+|+.|++.|++++... +
T Consensus 59 laA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~----------------~ 122 (230)
T d1g8sa_ 59 LAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----------------E 122 (230)
T ss_dssp HHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----------------T
T ss_pred HHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh----------------c
Confidence 3344443 566889999999999999999999998 4469999999999999999886554 4
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++..+.++..... +.....+|++++. ..+.+..+...++.++.++|||||.+++
T Consensus 123 ni~~i~~d~~~~~---~~~~~~~~v~~i~---~~~~~~~~~~~~l~~~~r~LKpgG~~~i 176 (230)
T d1g8sa_ 123 NIIPILGDANKPQ---EYANIVEKVDVIY---EDVAQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp TEEEEECCTTCGG---GGTTTCCCEEEEE---ECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccceEEEeeccCc---ccccccceeEEee---ccccchHHHHHHHHHHHHhcccCceEEE
Confidence 6788888887764 3445556665532 2345567788999999999999999873
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=4.7e-14 Score=135.41 Aligned_cols=117 Identities=25% Similarity=0.259 Sum_probs=95.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.=...|+..+.+.||.+|||+|||+|.+++.+|++ | ..+|+++|+++.+++.|+++++..+.. ...+
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~-----------~~~n 151 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-----------PPDN 151 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-----------CCTT
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC-----------CCce
Confidence 34456777888999999999999999999999998 4 469999999999999999988753210 1368
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.++++|+.+. +++.++||.|+.. .+++..++..+.++|||||.++.-.+
T Consensus 152 v~~~~~d~~~~----~~~~~~fDaV~ld--------lp~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 152 WRLVVSDLADS----ELPDGSVDRAVLD--------MLAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp EEEECSCGGGC----CCCTTCEEEEEEE--------SSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred EEEEecccccc----cccCCCcceEEEe--------cCCHHHHHHHHHhccCCCCEEEEEeC
Confidence 99999999886 4788999999853 24556789999999999999984433
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=1.6e-13 Score=128.02 Aligned_cols=108 Identities=23% Similarity=0.191 Sum_probs=86.9
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+++.+.+.+|.+|||||||+|.++..+|+. | ..+|+++|+++.+++.|+++++..++ .++.
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~--------------~n~~ 129 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI--------------ENVI 129 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC--------------CSEE
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc--------------cccc
Confidence 344566778899999999999999999999987 4 35899999999999999999999887 6889
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+|+.+.. ...++||+|++.. .+.+. +. .+.+.|||||+|+.
T Consensus 130 ~~~~d~~~~~----~~~~~fD~I~~~~---~~~~~--p~----~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 130 FVCGDGYYGV----PEFSPYDVIFVTV---GVDEV--PE----TWFTQLKEGGRVIV 173 (213)
T ss_dssp EEESCGGGCC----GGGCCEEEEEECS---BBSCC--CH----HHHHHEEEEEEEEE
T ss_pred cccCchHHcc----ccccchhhhhhhc---cHHHh--HH----HHHHhcCCCcEEEE
Confidence 9999988753 4567899999765 33322 22 34577999999874
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.45 E-value=1.3e-13 Score=127.61 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=86.8
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+..|||||||+|..+..+|+. +...++|||+++.++..|.+++...++ +||.++++|+..+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l--------------~Nv~~~~~Da~~l~~-- 93 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA--------------QNVKLLNIDADTLTD-- 93 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC--------------SSEEEECCCGGGHHH--
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc--------------cCchhcccchhhhhc--
Confidence 458999999999999999988 456999999999999999999999998 689999999987742
Q ss_pred CCCCCceeEEEeccccccccChhh--------HHHHHHHHhccccCCcEEeccC
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESM--------LSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~--------l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++++++|.|+... ...+... -..+|..+.|+|||||.|++.+
T Consensus 94 ~~~~~~~d~v~i~f---p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 94 VFEPGEVKRVYLNF---SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp HCCTTSCCEEEEES---CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccCchhhhcccccc---ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 26789999998543 2332221 1579999999999999998543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=9.6e-14 Score=137.32 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+|||+|.+++.+|+. +.+|+++|+|+.+++.|+++++.||+ ++++++++|+.++...
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl--------------~~~~~i~~d~~~~~~~ 208 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL--------------GNVRVLEANAFDLLRR 208 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC--------------TTEEEEESCHHHHHHH
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCC--------------CCcceeeccHHHHhhh
Confidence 47899999999999999998864 55999999999999999999999998 5799999999876433
Q ss_pred cCCCCCceeEEEeccccccccC------hhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLY------ESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~------~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
++....+||+|++.+..+.... ......++..+.++|||||.|+..+|+.
T Consensus 209 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 209 LEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp HHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred hHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 3345678999999865332211 2234567888999999999999766653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.43 E-value=2.5e-13 Score=129.93 Aligned_cols=111 Identities=23% Similarity=0.285 Sum_probs=88.5
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.++......+.++|||||||+|.++..++++ +..+++++|+ +.+++.|++++...++ .+++.++
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-------------~~rv~~~ 135 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-------------SDRVDVV 135 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-------------TTTEEEE
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc-------------ccchhhc
Confidence 34455556677799999999999999999988 4459999998 4588999999998887 3689999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+|+.+. .+.+||+|++.. ++++. .....+|.+++++|||||.|++
T Consensus 136 ~~D~~~~------~~~~~D~v~~~~---vlh~~~d~~~~~~L~~~~~~LkPGG~l~i 183 (253)
T d1tw3a2 136 EGDFFEP------LPRKADAIILSF---VLLNWPDHDAVRILTRCAEALEPGGRILI 183 (253)
T ss_dssp ECCTTSC------CSSCEEEEEEES---CGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccchhh------cccchhheeecc---ccccCCchhhHHHHHHHHHhcCCCcEEEE
Confidence 9998653 245799999654 44443 3456789999999999999884
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=1.2e-13 Score=132.94 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.-...|+..+.+.+|.+|||+|||+|.++..+|++ | ..+|+++|+++.+++.|+++++..++. ++
T Consensus 90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~-------------~~ 156 (266)
T d1o54a_ 90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-------------ER 156 (266)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-------------GG
T ss_pred HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc-------------cC
Confidence 33445778889999999999999999999999987 3 359999999999999999999998873 58
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+..+|+... +....||.|+.. .+++..++..+.++|||||.++..
T Consensus 157 v~~~~~d~~~~-----~~~~~~D~V~~d--------~p~p~~~l~~~~~~LKpGG~lv~~ 203 (266)
T d1o54a_ 157 VTIKVRDISEG-----FDEKDVDALFLD--------VPDPWNYIDKCWEALKGGGRFATV 203 (266)
T ss_dssp EEEECCCGGGC-----CSCCSEEEEEEC--------CSCGGGTHHHHHHHEEEEEEEEEE
T ss_pred cEEEecccccc-----ccccceeeeEec--------CCCHHHHHHHHHhhcCCCCEEEEE
Confidence 89999987653 567889999843 245677899999999999999843
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=6e-13 Score=128.32 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=102.8
Q ss_pred chhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCC
Q 010913 269 FGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWW 347 (497)
Q Consensus 269 ~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~ 347 (497)
|.+....+--+..|+...+.++.... ..+.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++++..+++
T Consensus 81 ~~v~~~VlIPRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-- 157 (274)
T d2b3ta1 81 LFVSPATLIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-- 157 (274)
T ss_dssp EECCTTSCCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC--
T ss_pred EEEeccccccccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc--
Confidence 34555555556667877777766543 45678999999999999999887 556999999999999999999999987
Q ss_pred CCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEecccccc----------ccCh------------hhHHHHH
Q 010913 348 DRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYC----------LLYE------------SMLSSVL 405 (497)
Q Consensus 348 ~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~----------l~~~------------~~l~~vL 405 (497)
.+|+++++|+.+. ++..+||+|||++.-.- +.++ .....++
T Consensus 158 ------------~~v~~~~~d~~~~-----~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~ 220 (274)
T d2b3ta1 158 ------------KNIHILQSDWFSA-----LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHII 220 (274)
T ss_dssp ------------CSEEEECCSTTGG-----GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHH
T ss_pred ------------ccceeeecccccc-----cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHH
Confidence 5799999998764 55679999999964211 1111 2245688
Q ss_pred HHHhccccCCcEEecc
Q 010913 406 FARDQWLKPGGAILPD 421 (497)
Q Consensus 406 ~~~~r~LkpgG~li~~ 421 (497)
....++|+|||.+++.
T Consensus 221 ~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 221 EQSRNALVSGGFLLLE 236 (274)
T ss_dssp HHHGGGEEEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEE
Confidence 8899999999999853
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=4.1e-13 Score=133.34 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=91.2
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCCCCCCC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQSEGNI 356 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~-------gl~~~~~~~~~~~ 356 (497)
..+.++....+.++.+|||||||+|.+++.+|+. |+.+|+|||+|+.+++.|++..+.. |+.
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~---------- 208 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK---------- 208 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc----------
Confidence 3455667778899999999999999999998876 7779999999999999998765532 221
Q ss_pred CCCCceEEEecchhhcccccCCCCC--ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 357 NNAGKMEVVQGMVEELGESMQIQPH--SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~~~~--~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..+|++++||+.+.. +... .+|+|+++. +.+.+.+...|.++.+.|||||.++.
T Consensus 209 --~~~i~~~~gd~~~~~----~~~~~~~advi~~~~----~~f~~~~~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 209 --HAEYTLERGDFLSEE----WRERIANTSVIFVNN----FAFGPEVDHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp --CCCEEEEECCTTSHH----HHHHHHHCSEEEECC----TTTCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred --CCceEEEECcccccc----cccccCcceEEEEcc----eecchHHHHHHHHHHHhCCCCcEEEE
Confidence 258999999998763 3333 357787543 33456778899999999999999984
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.38 E-value=4.2e-13 Score=132.39 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||++||+|.+++.+++.|+..|++||+|+.+++.|++++..|++. ..+++++++|+.+.-..
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~------------~~~~~~i~~d~~~~l~~ 210 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD------------MANHQLVVMDVFDYFKY 210 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC------------CTTEEEEESCHHHHHHH
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc------------CcceEEEEccHHHHHHH
Confidence 579999999999999999999999999999999999999999999999983 25799999999765322
Q ss_pred cCCCCCceeEEEeccccccc------cChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 376 MQIQPHSVDVLVSEWMGYCL------LYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l------~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+.....+||+|++.+..+.- .-......++..+.++|+|||+|+.++|+
T Consensus 211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 22345789999998753321 11234567888899999999999976664
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.36 E-value=1.4e-12 Score=120.68 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=86.3
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
...|||||||+|.++..+|+. +...++|+|+++.++..|.+++...++ +++.++.+|+..+..
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l--------------~Ni~~~~~da~~l~~-- 95 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV--------------PNIKLLWVDGSDLTD-- 95 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--------------SSEEEEECCSSCGGG--
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc--------------ccceeeecCHHHHhh--
Confidence 358999999999999999998 556999999999999999999999887 689999999988753
Q ss_pred CCCCCceeEEEeccccccccChh--------hHHHHHHHHhccccCCcEEeccC
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYES--------MLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~--------~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++..++|.|++.. ...+.. .-..+|..+.++|||||.|++.|
T Consensus 96 ~~~~~~~~~i~i~f---PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 96 YFEDGEIDRLYLNF---SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp TSCTTCCSEEEEES---CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred hccCCceehhcccc---cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 36788999998543 111111 12678999999999999998654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=1.1e-12 Score=125.93 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+|||+|.+++.+|+.|+.+|+|+|+|+.+++.|+++++.|++. ++++++++|+.++
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~-------------~~v~~~~~D~~~~--- 169 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-------------DRMSAYNMDNRDF--- 169 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-------------TTEEEECSCTTTC---
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC-------------ceEEEEEcchHHh---
Confidence 689999999999999999999998779999999999999999999999983 5899999999887
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+.+.||.|++..+.+. ..++..+.+.|+|||.|.
T Consensus 170 --~~~~~~D~Ii~~~p~~~-------~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 170 --PGENIADRILMGYVVRT-------HEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp --CCCSCEEEEEECCCSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred --ccCCCCCEEEECCCCch-------HHHHHHHHhhcCCCCEEE
Confidence 34678999996543222 235566678899999885
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=2.4e-12 Score=120.85 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=90.1
Q ss_pred HHHHHH---hCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 285 YRQAIL---ENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 285 y~~~i~---~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
...+|+ ..+.+.||.+|||+|||+|..+..+|+. | .++|+|||+|+.+++.|+++++..
T Consensus 58 laa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---------------- 121 (227)
T d1g8aa_ 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---------------- 121 (227)
T ss_dssp HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----------------
T ss_pred HHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc----------------
Confidence 344454 3456889999999999999999999998 5 469999999999999999987654
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++..+.++...... .+.....+|+|++. +.+......++.++.++|||||.+++.
T Consensus 122 ~~~~~i~~d~~~~~~-~~~~~~~vD~i~~d-----~~~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 122 RNIVPILGDATKPEE-YRALVPKVDVIFED-----VAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp TTEEEEECCTTCGGG-GTTTCCCEEEEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEEECCCccc-ccccccceEEEEEE-----ccccchHHHHHHHHHHhcccCCeEEEE
Confidence 367778888765432 23445789999864 244567788999999999999998843
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=8.4e-13 Score=130.35 Aligned_cols=124 Identities=22% Similarity=0.251 Sum_probs=89.6
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...|+..+.+.+|.+|||+|||+|.+++.+|++ | .++|+++|+++.+++.|+++++..+.... ........+++.
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~---~~~~~~~~~nv~ 163 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK---LSHVEEWPDNVD 163 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHT---TTCSSCCCCCEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhh---hhhhhcccccee
Confidence 445677778999999999999999999999998 4 36999999999999999999875431100 000112247899
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++++|+..... .++...||.|+... +.+..+|..+.++|||||+|+.-.
T Consensus 164 ~~~~di~~~~~--~~~~~~fD~V~LD~--------p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 164 FIHKDISGATE--DIKSLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp EEESCTTCCC---------EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred EEecchhhccc--ccCCCCcceEeecC--------cCHHHHHHHHHHhccCCCEEEEEe
Confidence 99999987641 24567899998532 234458889999999999998433
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=6.7e-13 Score=128.42 Aligned_cols=112 Identities=16% Similarity=0.096 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc------CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA------GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~------G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
.++.+|||||||+|.++..+++. +. ..++|||+|+.|++.|++++...... ..-++.+...+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~-----------~~~~~~~~~~~ 107 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL-----------ENVKFAWHKET 107 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC-----------TTEEEEEECSC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc-----------ccccccchhhh
Confidence 44558999999999988777653 21 26899999999999999987543211 01234556666
Q ss_pred hhhccc--ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 369 VEELGE--SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 369 ~~~l~~--~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+.. ..+.+.++||+|++.. ++.+.+++..+|..+.++|+|||.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~fD~I~~~~---~l~~~~d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 108 SSEYQSRMLEKKELQKWDFIHMIQ---MLYYVKDIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp HHHHHHHHTTSSSCCCEEEEEEES---CGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhhcchhcccCCCCceeEEEEcc---ceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 654311 1245688999999654 6777788999999999999999998743
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.5e-12 Score=122.15 Aligned_cols=105 Identities=23% Similarity=0.316 Sum_probs=81.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.+|.+|||||||+|..+..+|+. | ..+|+|+|+++.+++.|+++++..++. +....++.++.+|+..
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~---------~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT---------LLSSGRVQLVVGDGRM 143 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH---------HHHTSSEEEEESCGGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc---------cccccceEEEEeeccc
Confidence 5689999999999999999999987 4 459999999999999999998776541 1112578999999887
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.. .+..+||+|++.. .+.+. ..++.+.|||||+|+.
T Consensus 144 ~~----~~~~~fD~I~~~~---~~~~i------p~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 144 GY----AEEAPYDAIHVGA---AAPVV------PQALIDQLKPGGRLIL 179 (224)
T ss_dssp CC----GGGCCEEEEEECS---BBSSC------CHHHHHTEEEEEEEEE
T ss_pred cc----chhhhhhhhhhhc---chhhc------CHHHHhhcCCCcEEEE
Confidence 53 4567899999754 33222 1345688999999984
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.32 E-value=1.8e-12 Score=126.54 Aligned_cols=112 Identities=20% Similarity=0.095 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||++||||.+++.+++.|+ +|++||.|+.+++.|++++..||+.. .+++++++|+.++-..
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~------------~~~~~i~~D~~~~l~~ 197 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQ------------APIRWICEDAMKFIQR 197 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTT------------SCEEEECSCHHHHHHH
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccC------------CcEEEEeCCHHHhHHH
Confidence 5688999999999999999999998 89999999999999999999998842 4799999999876322
Q ss_pred cCCCCCceeEEEeccccccccC-------hhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLY-------ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~-------~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
......+||+||+.+..+.... ......++..+.++|+|||.+++
T Consensus 198 ~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll 249 (309)
T d2igta1 198 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV 249 (309)
T ss_dssp HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 2223578999999875443211 34456677888999999997653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.31 E-value=6.4e-12 Score=120.22 Aligned_cols=112 Identities=24% Similarity=0.229 Sum_probs=88.9
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
...++........++|||||||+|.++..++++ +..+++++|+ +.++..|++++...++ .+++.+
T Consensus 70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~-------------~~ri~~ 135 (256)
T d1qzza2 70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-------------ADRVTV 135 (256)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-------------TTTEEE
T ss_pred HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC-------------cceeee
Confidence 344555666667789999999999999999998 4459999998 6789999999988887 368999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEec
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++..+. . +.++|+|++.. +|++. .....+|.+++++|||||.+++
T Consensus 136 ~~~d~~~~-----~-p~~~D~v~~~~---vLh~~~d~~~~~lL~~i~~~LkpgG~llI 184 (256)
T d1qzza2 136 AEGDFFKP-----L-PVTADVVLLSF---VLLNWSDEDALTILRGCVRALEPGGRLLV 184 (256)
T ss_dssp EECCTTSC-----C-SCCEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeecccc-----c-cccchhhhccc---cccccCcHHHHHHHHHHHhhcCCcceeEE
Confidence 99988652 3 34699999654 55443 3456789999999999998874
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.9e-12 Score=124.44 Aligned_cols=163 Identities=18% Similarity=0.134 Sum_probs=95.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC-CCC------C---------CCC
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRP-QSE------G---------NIN 357 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~-~~~------~---------~~~ 357 (497)
...+|.+|||||||+|.+++..+..+..+|+|+|+|+.|++.|++.++..+...... ... . ...
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 456789999999999999876666555699999999999999998876543210000 000 0 000
Q ss_pred CCCceEEEecchhhcc--cccCCCCCceeEEEeccccccc-cChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCC
Q 010913 358 NAGKMEVVQGMVEELG--ESMQIQPHSVDVLVSEWMGYCL-LYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGG 434 (497)
Q Consensus 358 ~~~~i~~i~gd~~~l~--~~l~~~~~~fDvIvs~~~~~~l-~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~ 434 (497)
......++..|+..-. ...+.+.++||+|++......+ ....++..++.++.++|||||.|+.....-.. .+..+.
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~-~~~~~~ 209 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-WYLAGE 209 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-EEEETT
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCc-ccccCC
Confidence 0001233444553321 1123445689999975532222 22346889999999999999999843211000 000000
Q ss_pred CCCCccccccCccccccchHHHhhhcC
Q 010913 435 TSLPFWENVYGFTMSCVGREVVQDAAG 461 (497)
Q Consensus 435 ~~~~fw~~v~g~~~~~~~~~~~~~~~~ 461 (497)
..| ..+.+....+...+...+|.
T Consensus 210 --~~~--~~~~~t~e~v~~~l~~aGf~ 232 (263)
T d2g72a1 210 --ARL--TVVPVSEEEVREALVRSGYK 232 (263)
T ss_dssp --EEE--ECCCCCHHHHHHHHHHTTEE
T ss_pred --ccc--ccCCCCHHHHHHHHHHCCCe
Confidence 001 23456777788778877764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.30 E-value=4.9e-12 Score=118.37 Aligned_cols=103 Identities=24% Similarity=0.269 Sum_probs=81.3
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.+++.+.+.+|.+|||||||+|.++..+|+.+. +|+++|+++.+++.|+++.... .++.++.+
T Consensus 61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~----------------~nv~~~~~ 123 (224)
T d1vbfa_ 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY----------------NNIKLILG 123 (224)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC----------------SSEEEEES
T ss_pred HHHHHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc----------------cccccccC
Confidence 356677889999999999999999999999865 9999999999999999886543 48999999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
|..... ...++||+|++.. .+.+. + ..+.+.|||||+|+.
T Consensus 124 d~~~g~----~~~~pfD~Iiv~~---a~~~i--p----~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 124 DGTLGY----EEEKPYDRVVVWA---TAPTL--L----CKPYEQLKEGGIMIL 163 (224)
T ss_dssp CGGGCC----GGGCCEEEEEESS---BBSSC--C----HHHHHTEEEEEEEEE
T ss_pred chhhcc----hhhhhHHHHHhhc---chhhh--h----HHHHHhcCCCCEEEE
Confidence 987642 2357899999654 33222 2 234578999999883
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.30 E-value=2.5e-12 Score=116.82 Aligned_cols=110 Identities=19% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
...|.+|||++||||.+++.++.+|+.+|++||.++.+++.+++++...+. ..+++++++|+..+-.
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-------------~~~~~i~~~D~~~~l~ 105 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-------------PEKFEVRKMDANRALE 105 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-------------GGGEEEEESCHHHHHH
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-------------ccccccccccchhhhh
Confidence 357899999999999999999999999999999999999999999988876 2589999999977532
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHH--hccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~--~r~LkpgG~li~~ 421 (497)
.+.-...+||+|+..++ |.. .....++..+ ..+|+|+|++++.
T Consensus 106 ~~~~~~~~fDlIflDPP-Y~~---~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 106 QFYEEKLQFDLVLLDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp HHHHTTCCEEEEEECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhcccCCCcceEEechh-hhh---hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 11124568999998874 221 2334455554 3589999999854
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=3.9e-12 Score=114.27 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.+|.+|||+|||+|.+++.++.+|+ +|+++|.++.+++.|+++++.+++. .++....++.....
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~-------------~~v~~~~~d~~~~~- 103 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLG-------------ARVVALPVEVFLPE- 103 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCC-------------CEEECSCHHHHHHH-
T ss_pred ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccc-------------cceeeeehhccccc-
Confidence 46789999999999999999999998 8999999999999999999999872 35554444432111
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
......+||+|+++++ |.......+..++. ..+|+|||++++.
T Consensus 104 -~~~~~~~fD~If~DPP-Y~~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 104 -AKAQGERFTVAFMAPP-YAMDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp -HHHTTCCEEEEEECCC-TTSCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred -ccccCCccceeEEccc-cccCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 1234678999999864 22222223333332 3689999998853
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=4.4e-12 Score=115.24 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..+.+|||++||||.+++.++.+|+.+|++||.++.+++.+++++...+. .++.++.+|+..+.
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~--------------~~~~ii~~d~~~~l-- 105 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA--------------GNARVVNSNAMSFL-- 105 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC--------------CSEEEECSCHHHHH--
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc--------------cceeeeeecccccc--
Confidence 36789999999999999999999999999999999999999999988776 57899999998763
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHH--hccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~--~r~LkpgG~li~~ 421 (497)
.....+||+|++.++ |. ......++..+ ..+|+|+|++++.
T Consensus 106 -~~~~~~fDlIf~DPP-Y~---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 106 -AQKGTPHNIVFVDPP-FR---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp -SSCCCCEEEEEECCS-SS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -cccccccCEEEEcCc-cc---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 345678999999864 22 12334455554 3579999999854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=1.2e-11 Score=125.08 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=85.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
+...|+....+.+|.+|||||||+|.+++.+|+. |+++|+|||+|+.+++.|+++++..+... .........+.
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~-----~~~g~~~~~~~ 278 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRC-----KLYGMRLNNVE 278 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHH-----HHTTBCCCCEE
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhh-----hhhccccccce
Confidence 4455667778999999999999999999999877 87799999999999999998876432100 00000012233
Q ss_pred E-EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 364 V-VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~-i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+ +.++...... ....-..+|+|+.+. +.+.+.+...|.++.+.|||||.|+.
T Consensus 279 ~~~~~~f~~~~~-~d~~~~~adVV~inn----~~f~~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 279 FSLKKSFVDNNR-VAELIPQCDVILVNN----FLFDEDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp EEESSCSTTCHH-HHHHGGGCSEEEECC----TTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeeeechhhccc-cccccccceEEEEec----ccCchHHHHHHHHHHHhcCCCcEEEE
Confidence 3 3343322110 001123578888543 34567888999999999999999884
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.23 E-value=1.6e-11 Score=114.06 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=85.3
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..+++.+.+.+|.+|||||||+|..+..+|+. |. +|+++|.++.+++.|++++...|+ .++.++
T Consensus 68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~--------------~nv~~~ 132 (215)
T d1jg1a_ 68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGV--------------KNVHVI 132 (215)
T ss_dssp HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTC--------------CSEEEE
T ss_pred HHHHHhhccCccceEEEecCCCChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCC--------------ceeEEE
Confidence 44556667899999999999999999999987 64 799999999999999999999987 689999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++|+.... ...++||+|++.. .... .+.. +...|||||+|+
T Consensus 133 ~gd~~~g~----~~~~pfD~Iiv~~---a~~~--ip~~----l~~qL~~gGrLv 173 (215)
T d1jg1a_ 133 LGDGSKGF----PPKAPYDVIIVTA---GAPK--IPEP----LIEQLKIGGKLI 173 (215)
T ss_dssp ESCGGGCC----GGGCCEEEEEECS---BBSS--CCHH----HHHTEEEEEEEE
T ss_pred ECccccCC----cccCcceeEEeec---cccc--CCHH----HHHhcCCCCEEE
Confidence 99998753 3467899999754 3322 2233 345799999998
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.20 E-value=4.4e-11 Score=110.07 Aligned_cols=76 Identities=33% Similarity=0.405 Sum_probs=67.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
....|++|||+|||||.+++.++..|+.+|+|||+++.+++.|+++++.++. ++.++.+|+..+
T Consensus 43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~---------------~~~~~~~d~~~~- 106 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---------------KFKVFIGDVSEF- 106 (201)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---------------SEEEEESCGGGC-
T ss_pred CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC---------------CceEEECchhhh-
Confidence 4467899999999999999999999988999999999999999999888765 688999998764
Q ss_pred cccCCCCCceeEEEeccc
Q 010913 374 ESMQIQPHSVDVLVSEWM 391 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~ 391 (497)
..+||+|+++++
T Consensus 107 ------~~~fD~Vi~nPP 118 (201)
T d1wy7a1 107 ------NSRVDIVIMNPP 118 (201)
T ss_dssp ------CCCCSEEEECCC
T ss_pred ------CCcCcEEEEcCc
Confidence 457999999875
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=2.2e-11 Score=116.89 Aligned_cols=136 Identities=20% Similarity=0.214 Sum_probs=96.1
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC
Q 010913 271 IHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRP 350 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~ 350 (497)
+....+--+..|+.+.+.++......+..+|+|+|||+|.+++.+++.+..+|+|+|+|+.+++.|+++++.+++.
T Consensus 84 v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~---- 159 (271)
T d1nv8a_ 84 VEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS---- 159 (271)
T ss_dssp CCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT----
T ss_pred EecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCC----
Confidence 3334444455566666666554333445689999999999999998887679999999999999999999999983
Q ss_pred CCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEecccccc---------ccChhh---------HHHHHHHHhccc
Q 010913 351 QSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYC---------LLYESM---------LSSVLFARDQWL 412 (497)
Q Consensus 351 ~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~---------l~~~~~---------l~~vL~~~~r~L 412 (497)
.++.+..++..+.. +...++||+|||++. |. ..|++. +..+.+-+.++|
T Consensus 160 ---------~~~~i~~~~~~~~~---~~~~~~fDlIVsNPP-YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L 226 (271)
T d1nv8a_ 160 ---------DRFFVRKGEFLEPF---KEKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD 226 (271)
T ss_dssp ---------TSEEEEESSTTGGG---GGGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC
T ss_pred ---------ceeEEeeccccccc---ccccCcccEEEEccc-ccCcccccceeeeeccccccccccchHHHHHHHHHHhc
Confidence 57889999887652 223478999999963 11 112211 122222256899
Q ss_pred cCCcEEeccCc
Q 010913 413 KPGGAILPDTA 423 (497)
Q Consensus 413 kpgG~li~~~~ 423 (497)
+|||.+++...
T Consensus 227 ~~~G~l~~Eig 237 (271)
T d1nv8a_ 227 TSGKIVLMEIG 237 (271)
T ss_dssp CTTCEEEEECC
T ss_pred CCCCEEEEEEC
Confidence 99999985443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.18 E-value=3.2e-11 Score=110.41 Aligned_cols=71 Identities=24% Similarity=0.289 Sum_probs=62.6
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
-..|++|||+|||||.+++.+++.|+++|+|||+++.+++.|++++ .++.++.+|+.++
T Consensus 46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-------------------~~~~~~~~D~~~l-- 104 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-------------------GGVNFMVADVSEI-- 104 (197)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-------------------TTSEEEECCGGGC--
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-------------------ccccEEEEehhhc--
Confidence 3579999999999999999999999989999999999999998874 4678999999775
Q ss_pred ccCCCCCceeEEEeccc
Q 010913 375 SMQIQPHSVDVLVSEWM 391 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~ 391 (497)
+++||+|++++.
T Consensus 105 -----~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 105 -----SGKYDTWIMNPP 116 (197)
T ss_dssp -----CCCEEEEEECCC
T ss_pred -----CCcceEEEeCcc
Confidence 367999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.08 E-value=1.1e-10 Score=109.02 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=77.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc----CC---CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA----GA---SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~----G~---~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.+.++.+|||||||||.++..+++. |. .+|++||.++.+++.|++++...++. .....++.++.
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~---------~~~~~nv~~~~ 147 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS---------MLDSGQLLIVE 147 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH---------HHHHTSEEEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh---------hcCccEEEEEe
Confidence 6789999999999999999888876 22 38999999999999999886543210 00014799999
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+|..... .+.++||+|++.. .+...+ . .+.+.|||||+++
T Consensus 148 ~d~~~~~----~~~~~fD~Iiv~~---a~~~~p--~----~l~~~Lk~gG~lV 187 (223)
T d1r18a_ 148 GDGRKGY----PPNAPYNAIHVGA---AAPDTP--T----ELINQLASGGRLI 187 (223)
T ss_dssp SCGGGCC----GGGCSEEEEEECS---CBSSCC--H----HHHHTEEEEEEEE
T ss_pred ccccccc----ccccceeeEEEEe---echhch--H----HHHHhcCCCcEEE
Confidence 9998753 3567899999754 332221 2 3467999999997
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=1.6e-10 Score=107.37 Aligned_cols=109 Identities=17% Similarity=0.336 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++++|||+|||+|..++.+|++ + .++|+++|+++.+++.|+++++..|+. ++|+++.|+..++-
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~-------------~~i~l~~Gd~~e~l 121 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ-------------DKVTILNGASQDLI 121 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG-------------GGEEEEESCHHHHG
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC-------------ccceeeeccccccc
Confidence 46789999999999999999986 2 359999999999999999999998883 58999999998763
Q ss_pred ccc--CCCCCceeEEEeccccccccChh-hHHHHHHHHhccccCCcEEeccC
Q 010913 374 ESM--QIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 374 ~~l--~~~~~~fDvIvs~~~~~~l~~~~-~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
..+ .+...+||+|+... . +.. .....+.+..++|||||+|+++.
T Consensus 122 ~~l~~~~~~~~~D~ifiD~---~--~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLDH---W--KDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp GGHHHHSCCCCEEEEEECS---C--GGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred cchhhcccccccceeeecc---c--ccccccHHHHHHHhCccCCCcEEEEeC
Confidence 211 13456899999542 1 111 12334666789999999998664
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=4.5e-10 Score=102.31 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=88.8
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.++..+.+.++.+|||++||+|..+..++++ +..+|+|+|.++.|++.|++++...+ .++.+++
T Consensus 14 evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~---------------~r~~~~~ 78 (192)
T d1m6ya2 14 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---------------DRVSLFK 78 (192)
T ss_dssp HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---------------TTEEEEE
T ss_pred HHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc---------------ccccchh
Confidence 3444456688999999999999999998887 55699999999999999999986654 5899999
Q ss_pred cchhhccccc-CCCCCceeEEEeccccccc-------cChhhHHHHHHHHhccccCCcEEe
Q 010913 367 GMVEELGESM-QIQPHSVDVLVSEWMGYCL-------LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 gd~~~l~~~l-~~~~~~fDvIvs~~~~~~l-------~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+++.++...+ .+..++||.|+... |..- .........|..+.++|+|||.++
T Consensus 79 ~~f~~~~~~~~~~~~~~vdgIl~Dl-GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ 138 (192)
T d1m6ya2 79 VSYREADFLLKTLGIEKVDGILMDL-GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIV 138 (192)
T ss_dssp CCGGGHHHHHHHTTCSCEEEEEEEC-SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEE
T ss_pred HHHhhHHHHHHHcCCCCcceeeecc-chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeee
Confidence 9887754211 23457899998542 2110 123456788999999999999987
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=6.2e-10 Score=103.52 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+.++||+||||+|..++.+|++ + .++|+++|.++...+.|+++++..|+ .++++++.|++.+.
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-------------~~~i~~~~Gda~e~ 123 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-------------EHKIDLRLKPALET 123 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-------------TTTEEEEESCHHHH
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-------------cceEEEEEeehhhc
Confidence 356789999999999999999987 2 35999999999999999999999998 36899999998664
Q ss_pred cccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
...+ ....++||+|+... ........+..+.+.|+|||+|+++..
T Consensus 124 l~~~~~~~~~~~fD~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDA------DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred chhhhhhcccCCccEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 2111 12357899999542 223445677788899999999996544
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.94 E-value=1.9e-09 Score=97.37 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
.+.+|||+.||||.+++.++.+||.+|+.||.+...+...+++++..++.. ....++..++......
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~------------~~~~~~~~d~~~~l~~- 109 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS------------EQAEVINQSSLDFLKQ- 109 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT------------TTEEEECSCHHHHTTS-
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccc------------cccccccccccccccc-
Confidence 678999999999999999999999999999999999999999999887632 3577788887665321
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHH--hccccCCcEEeccC
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPDT 422 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~--~r~LkpgG~li~~~ 422 (497)
.....+||+|++.++ |.. .....++..+ ..+|+++|++++.+
T Consensus 110 ~~~~~~fDlIFlDPP-Y~~---~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 110 PQNQPHFDVVFLDPP-FHF---NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCSSCCEEEEEECCC-SSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccCCcccEEEechh-Hhh---hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 123457999999874 221 2344555555 35899999998543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=7.1e-09 Score=98.21 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc-
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE- 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~- 374 (497)
+..+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.|++. +++.+++.+....-.
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~-------------~~~~~~~~~~~~~~~~ 127 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-------------DLIKVVKVPQKTLLMD 127 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-------------TTEEEEECCTTCSSTT
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC-------------cceeeeeeccHHhhhh
Confidence 4569999999999999998887 3349999999999999999999999983 688888866543210
Q ss_pred c-cCCCCCceeEEEeccccc
Q 010913 375 S-MQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 375 ~-l~~~~~~fDvIvs~~~~~ 393 (497)
. .....++||+|+|++..+
T Consensus 128 ~~~~~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 128 ALKEESEIIYDFCMCNPPFF 147 (250)
T ss_dssp TSTTCCSCCBSEEEECCCCC
T ss_pred hhhhcccCceeEEEecCccc
Confidence 0 012356899999998544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.84 E-value=2e-09 Score=100.52 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++++||+||+++|..++.+|++ + .++|+.+|.++..++.|++++.+.|+. ++|+++.|++.+.-
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~-------------~~i~~~~g~a~~~L 124 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-------------HKIDFREGPALPVL 124 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-------------GGEEEEESCHHHHH
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc-------------cceeeeehHHHHHH
Confidence 46789999999999999999986 3 359999999999999999999999983 68999999997763
Q ss_pred cccC---CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQ---IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~---~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..+. ...++||+|+... ........+..+.++|+|||+|+.+..
T Consensus 125 ~~l~~~~~~~~~fD~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 125 DEMIKDEKNHGSYDFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHHHHCGGGTTCBSEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHHhccccCCceeEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 2211 1246899999642 223455677778899999999997654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=2.3e-08 Score=99.45 Aligned_cols=116 Identities=19% Similarity=0.170 Sum_probs=86.8
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.+.+.+.++......++.+|||+.||+|.+++.+|+.+. +|+|||.++.+++.|+++++.||+ .+
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i--------------~n 261 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGL--------------QN 261 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTC--------------CS
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhccc--------------cc
Confidence 345555566666667889999999999999999998755 999999999999999999999998 68
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.++.+++++..........++|+||..+.-..+ ..++..+.+ ++|.-+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~------~~~~~~l~~-~~~~~ivY 312 (358)
T d1uwva2 262 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVY 312 (358)
T ss_dssp EEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEE
T ss_pred ceeeecchhhhhhhhhhhhccCceEEeCCCCccH------HHHHHHHHH-cCCCEEEE
Confidence 9999999887532222335679999987743332 234444444 35665554
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.75 E-value=4.8e-08 Score=88.65 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCCCH----hHHHHHHc-CC----CEEEEEeCCHHHHHHHHHHHHhCCCCCCCC-----CC---------
Q 010913 296 MKGAVVMDIGCGTGI----LSLFAAQA-GA----SRVIAVEASEKMAAVATQIAKDNDFWWDRP-----QS--------- 352 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~----ls~~la~~-G~----~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~-----~~--------- 352 (497)
.+..+||++|||||. +++.+... +. -+|+|+|+|+.+++.|++......-....+ .+
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345799999999997 45555543 11 279999999999998885321100000000 00
Q ss_pred ---CCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 353 ---EGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 353 ---~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.........+.+...+..... +.+.++||+|+|-.+... +..+....++..+.+.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~fDvI~CRNVLiY-f~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQ---YNVPGPFDAIFCRNVMIY-FDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSS---CCCCCCEEEEEECSSGGG-SCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccc---cCCCCCccEEEeehhHHh-cCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 000000112344444433321 234678999999663222 34556688999999999999999844
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.73 E-value=2.5e-08 Score=93.35 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....+.|.....+.++.+|||||||+|.+|..+++.+. +|+|||+++.++..++++.... +++
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~----------------~n~ 69 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH----------------DNF 69 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC----------------CSE
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc----------------cch
Confidence 35667788888889999999999999999999999876 9999999999999888775332 589
Q ss_pred EEEecchhhcccccCCCCCceeEEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
+++++|+.+++ ++......||++.
T Consensus 70 ~i~~~D~l~~~----~~~~~~~~vv~NL 93 (235)
T d1qama_ 70 QVLNKDILQFK----FPKNQSYKIFGNI 93 (235)
T ss_dssp EEECCCGGGCC----CCSSCCCEEEEEC
T ss_pred hhhhhhhhhcc----ccccccceeeeee
Confidence 99999999875 4444445677763
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.67 E-value=1.7e-08 Score=98.61 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+++||.||.|.|..+..+++. +..+|++||+++.+++.|++.+...+- .....++++++.+|+..+-
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~---------~~~~d~rv~i~~~Da~~~l- 145 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ---------GAFDDPRAVLVIDDARAYL- 145 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT---------TGGGCTTEEEEESCHHHHH-
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc---------CccCCCceEEEEchHHHHh-
Confidence 45689999999999999999888 567999999999999999988643110 0112468999999998873
Q ss_pred ccCCCCCceeEEEecccccccc-C-hhh--HHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLL-Y-ESM--LSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~-~-~~~--l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.-...+||+|++........ . ... -..++..+.+.|+|||+++...
T Consensus 146 --~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 146 --ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp --HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred --hhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 23467899999754211110 0 111 1568899999999999998544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=8.8e-08 Score=87.72 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|+|+|+|.|.-++.+|-. +..+|+.+|.+..-+...++.+...++ .++++++++++++.
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L--------------~nv~v~~~R~E~~~- 128 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL--------------ENIEPVQSRVEEFP- 128 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--------------SSEEEEECCTTTSC-
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC--------------cceeeeccchhhhc-
Confidence 35679999999999999999876 556999999999999999999999998 68999999999873
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...+||+|+|-.+ ..+..++.-....+++||.++
T Consensus 129 ----~~~~fD~V~sRA~-------~~~~~ll~~~~~~l~~~g~~~ 162 (207)
T d1jsxa_ 129 ----SEPPFDGVISRAF-------ASLNDMVSWCHHLPGEQGRFY 162 (207)
T ss_dssp ----CCSCEEEEECSCS-------SSHHHHHHHHTTSEEEEEEEE
T ss_pred ----cccccceehhhhh-------cCHHHHHHHHHHhcCCCcEEE
Confidence 4568999998653 346778888899999999988
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=2e-08 Score=97.06 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+++||-||.|.|..+..+++. +..+|++||+++.+++.|++.+..+.- ....++++++.+|+..+-
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~----------~~~d~rv~v~~~Da~~~l- 156 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC----------GFDDPRAEIVIANGAEYV- 156 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG----------GGGCTTEEEEESCHHHHG-
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc----------cccCCCcEEEhhhHHHHH-
Confidence 45689999999999999999998 567999999999999999987654310 112378999999998874
Q ss_pred ccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.-..++||+|++............ -..++..+.+.|+|||+++....
T Consensus 157 --~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 157 --RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp --GGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred --hcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 334678999997642211000011 25788999999999999985443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.60 E-value=3.3e-08 Score=94.88 Aligned_cols=118 Identities=18% Similarity=0.081 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++++||.||+|.|..+..+++.+..+|++||+++.+++.|++.+..+... .........++++++.+|+..+-
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~----~~~~~~~~d~rv~i~~~Da~~~l-- 144 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGL----LEAMLNGKHEKAKLTIGDGFEFI-- 144 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTH----HHHHHTTCCSSEEEEESCHHHHH--
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccch----hhhhhccCCCCceEEEChHHHHH--
Confidence 467899999999999999998887779999999999999999876322100 00000112368999999998763
Q ss_pred cCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~ 422 (497)
. ..++||+|++...... ..... -..++..+.+.|+|||+++...
T Consensus 145 -~-~~~~yDvIi~D~~~~~-~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 145 -K-NNRGFDVIIADSTDPV-GPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp -H-HCCCEEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -h-ccCCCCEEEEeCCCCC-CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 1 3578999997643211 11111 1568999999999999998543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.56 E-value=7.1e-08 Score=94.62 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc----C--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA----G--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~----G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
...++.+|||.|||+|.++..+.+. + ..+++|+|+++.++..|+.++...+. ...+..+
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~---------------~~~~~~~ 178 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---------------KMTLLHQ 178 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---------------CCEEEES
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh---------------hhhhhcc
Confidence 3467789999999999998887653 2 23799999999999999988876654 5677777
Q ss_pred chhhcccccCCCCCceeEEEeccccccccCh---------------hhHHHHHHHHhccccCCcEEe
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYE---------------SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~---------------~~l~~vL~~~~r~LkpgG~li 419 (497)
+.... .+..+||+|+++++....... ..-..++..+.+.|+|||+++
T Consensus 179 d~~~~-----~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 179 DGLAN-----LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp CTTSC-----CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccc-----cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 76543 456789999999752211111 112346788899999999876
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.54 E-value=5.7e-08 Score=91.46 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=75.3
Q ss_pred HHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+..... .....+|||||||+|.++..++++ +.-+++..|+.+ .++ ..+. .++++
T Consensus 69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~-------------~~ri~ 127 (244)
T d1fp1d2 69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIE-------NAPP-------------LSGIE 127 (244)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHT-------TCCC-------------CTTEE
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhh-------ccCC-------------CCCeE
Confidence 344454444 345589999999999999999988 545999999843 322 2222 36899
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.+. .| ..|+++... +|++. +....+|+.+++.|+|||.|++.
T Consensus 128 ~~~gd~~~~-----~p--~~D~~~l~~---vLh~~~de~~~~iL~~~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 128 HVGGDMFAS-----VP--QGDAMILKA---VCHNWSDEKCIEFLSNCHKALSPNGKVIIV 177 (244)
T ss_dssp EEECCTTTC-----CC--CEEEEEEES---SGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EecCCcccc-----cc--cceEEEEeh---hhhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999998652 33 459999544 55443 44668899999999999998843
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.52 E-value=7.7e-08 Score=92.03 Aligned_cols=115 Identities=11% Similarity=0.009 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+++||-||.|.|..+..+.+. +..+|+.||+++.+++.|++.+..+.- ....++++++.+|+...-
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~----------~~~d~r~~i~~~D~~~~l- 142 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG----------KLDDPRVDVQVDDGFMHI- 142 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT----------TTTSTTEEEEESCSHHHH-
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc----------cccCCCeEEEechHHHHH-
Confidence 45689999999999999999997 678999999999999999997654211 112478999999988763
Q ss_pred ccCCCCCceeEEEeccccccccChh-hHHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~-~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.-...+||+|+.......-.... --..++..+.+.|+|||+++....
T Consensus 143 --~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 143 --AKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp --HTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred --hhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 23467899999864211100000 124688889999999999985443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.9e-08 Score=92.85 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+++||-||.|.|..+..+.+. +..+|++||+++.+++.|++.+..+.- ....++++++.+|+..+-
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~----------~~~d~rv~i~~~Da~~~l- 145 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI----------GYSSSKLTLHVGDGFEFM- 145 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG----------GGGCTTEEEEESCHHHHH-
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc----------ccCCCCceEEEccHHHHH-
Confidence 45689999999999999999998 678999999999999999987653210 112479999999988763
Q ss_pred ccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.-..++||+|++...... ..... -..++..+.+.|+|||+++...
T Consensus 146 --~~~~~~yDvIi~D~~~p~-~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 146 --KQNQDAFDVIITDSSDPM-GPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp --HTCSSCEEEEEEECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred --hcCCCCCCEEEEcCCCCC-CcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 234678999998643211 11111 2357889999999999998543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.51 E-value=8.7e-08 Score=92.90 Aligned_cols=114 Identities=17% Similarity=0.076 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+++||-||.|.|..+..+++. +..+|++||+++.+++.|++.+..+. .....++++++.+|+..+-
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~----------~~~~dprv~i~i~Da~~~l- 173 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS----------CGFSHPKLDLFCGDGFEFL- 173 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS----------GGGGCTTEEEECSCHHHHH-
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhc----------cccCCCCeEEEEchHHHHH-
Confidence 45689999999999999999997 55799999999999999998764432 1123478999999998773
Q ss_pred ccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.-...+||+|++...... .... .-..++..+.+.|+|||+++....
T Consensus 174 --~~~~~~yDvII~D~~dp~-~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 174 --KNHKNEFDVIITDSSDPV-GPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp --HHCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred --HhCCCCCCEEEEcCCCCC-CcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 235678999998642211 1111 125678899999999999995543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.47 E-value=1.6e-07 Score=90.55 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+++||-||.|.|..+..+.+. +..+|++||+++.+++.|++.+..+.- ....++++++.+|+...-.
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~----------~~~~~r~~i~~~Da~~~l~ 148 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI----------GYEDPRVNLVIGDGVAFLK 148 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG----------GGGSTTEEEEESCHHHHHH
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc----------cccCCCcEEEEccHHHHHh
Confidence 45689999999999999999998 667999999999999999987643210 1124789999999877631
Q ss_pred ccCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
....++||+|+....... ..... -..++..+++.|+|||+++....
T Consensus 149 --~~~~~~yDvIi~D~~dp~-~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 149 --NAAEGSYDAVIVDSSDPI-GPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp --TSCTTCEEEEEECCCCTT-SGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred --hccccCccEEEEcCCCCC-CcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 134568999997642211 11111 25688999999999999996544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.46 E-value=9.5e-09 Score=96.89 Aligned_cols=85 Identities=15% Similarity=0.233 Sum_probs=69.3
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.|.....+.++.+|||||||+|.+|..+++.|. +|+|||+++.+++.+++++.. .+++++
T Consensus 17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~----------------~~n~~i 79 (245)
T d1yuba_ 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL----------------NTRVTL 79 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT----------------CSEEEE
T ss_pred HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh----------------ccchhh
Confidence 445566777788999999999999999999999976 999999999888776654322 258999
Q ss_pred EecchhhcccccCCCCCceeEEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
+++|+.+++ ++...++.|+++.
T Consensus 80 i~~D~l~~~----~~~~~~~~vv~NL 101 (245)
T d1yuba_ 80 IHQDILQFQ----FPNKQRYKIVGNI 101 (245)
T ss_dssp CCSCCTTTT----CCCSSEEEEEEEC
T ss_pred hhhhhhccc----cccceeeeEeeee
Confidence 999999885 6677788888874
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.38 E-value=3.3e-07 Score=83.98 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
...++|+......++.+|||.|||+|.++..+.+. ....++|+|+++..+.. ...
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~-----------------------~~~ 62 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL-----------------------PPW 62 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC-----------------------CTT
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh-----------------------ccc
Confidence 45566777777788999999999999988877765 34589999999854321 134
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccC-------------------------hh-hHHHHHHHHhccccCC
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-------------------------ES-MLSSVLFARDQWLKPG 415 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-------------------------~~-~l~~vL~~~~r~Lkpg 415 (497)
..++.++.... ....+||+|++++....... .. ....++....+.|+||
T Consensus 63 ~~~~~~~~~~~-----~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~ 137 (223)
T d2ih2a1 63 AEGILADFLLW-----EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG 137 (223)
T ss_dssp EEEEESCGGGC-----CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEE
T ss_pred ceeeeeehhcc-----ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccC
Confidence 57788887665 34678999999864211110 00 1234567788999999
Q ss_pred cEEe
Q 010913 416 GAIL 419 (497)
Q Consensus 416 G~li 419 (497)
|.++
T Consensus 138 G~~~ 141 (223)
T d2ih2a1 138 GVLV 141 (223)
T ss_dssp EEEE
T ss_pred CceE
Confidence 9987
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.33 E-value=1.2e-06 Score=81.70 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+.+|+|||+|.|.-++.+|-. +..+|+.+|.+..-+...+..+...|+ .++.++++.++++..
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L--------------~n~~i~~~R~E~~~~ 134 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL--------------ENTTFCHDRAETFGQ 134 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC--------------SSEEEEESCHHHHTT
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC--------------CCcEEEeehhhhccc
Confidence 35679999999999999988875 667999999999999999999999998 689999999998752
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.- -...+||+|+|-.+ +.+..++.-...++++||.++
T Consensus 135 ~~-~~~~~~D~v~sRAv-------a~l~~ll~~~~~~l~~~g~~i 171 (239)
T d1xdza_ 135 RK-DVRESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFV 171 (239)
T ss_dssp CT-TTTTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEE
T ss_pred cc-cccccceEEEEhhh-------hCHHHHHHHHhhhcccCCEEE
Confidence 11 12468999998652 356778888999999999988
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=8.1e-07 Score=85.23 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=85.9
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
...+|.+|||+.+|.|.=+..++..+ ...|+|+|+++.-+...+++++..|+ .++.+...+....
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~--------------~~~~~~~~~~~~~ 164 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--------------KATVKQGDGRYPS 164 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--------------CCEEEECCTTCTH
T ss_pred CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc--------------cceeeeccccccc
Confidence 45789999999999999998888773 36899999999999999999999987 3455554443322
Q ss_pred ccccCCCCCceeEEEecc----ccccccC---------------hhhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 373 GESMQIQPHSVDVLVSEW----MGYCLLY---------------ESMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~----~~~~l~~---------------~~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
. .....+||.|+... .|..-.+ ......+|..+.+.|||||.|+-++|++.
T Consensus 165 ~---~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 165 Q---WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp H---HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred h---hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 1 13457899999743 2221111 11125788889999999999999999874
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.7e-06 Score=82.51 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=70.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.|.....+.++.+||+||+|+|.+|..+++.|. +|++||+++.++...++.+..... .++++
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~-------------~~~~~ 73 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-------------ASKLQ 73 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-------------GGGEE
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhcc-------------ccchh
Confidence 4556666767778899999999999999999999986 999999999999999988765543 25899
Q ss_pred EEecchhhcccccCCCCCceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
++.+|+...+ + ..+..||++.
T Consensus 74 ~i~~D~l~~~----~--~~~~~vV~NL 94 (278)
T d1zq9a1 74 VLVGDVLKTD----L--PFFDTCVANL 94 (278)
T ss_dssp EEESCTTTSC----C--CCCSEEEEEC
T ss_pred hhHHHHhhhh----h--hhhhhhhcch
Confidence 9999998764 2 2356788774
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.27 E-value=1.7e-06 Score=84.15 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||+.||.|.=+..++.. +...|+++|.++.-+...++++++.|+ .++.++..+...
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~--------------~~i~~~~~d~~~ 178 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV--------------LNVILFHSSSLH 178 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC--------------CSEEEESSCGGG
T ss_pred cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh--------------hccccccccccc
Confidence 4578999999999999988888776 345899999999999999999998887 578888888776
Q ss_pred cccccCCCCCceeEEEecc----cccccc--------Ch-------hhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 372 LGESMQIQPHSVDVLVSEW----MGYCLL--------YE-------SMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~----~~~~l~--------~~-------~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
+. .....||.|+... .|..-. .. .....+|....++|||||.|+.+||++.
T Consensus 179 ~~----~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 179 IG----ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp GG----GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred cc----cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 64 3467899999743 111100 11 1124677888999999999999999873
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.25 E-value=5e-07 Score=84.80 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
..+|||||||+|.++..++++ +.-+++..|..+ .++ ..+. .++|+++.+|+.+.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~-------------~~rv~~~~gD~f~~---- 135 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VVE-------NLSG-------------SNNLTYVGGDMFTS---- 135 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHT-------TCCC-------------BTTEEEEECCTTTC----
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HHH-------hCcc-------------cCceEEEecCcccC----
Confidence 478999999999999999988 445999999853 332 2222 36899999998752
Q ss_pred CCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCC---cEEe
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPG---GAIL 419 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~Lkpg---G~li 419 (497)
. ..+|+++... +|++.+ ....+|+.+++.|+|| |+++
T Consensus 136 -~--p~aD~~~l~~---vLHdw~d~~~~~iL~~~~~al~pgg~~~~ll 177 (244)
T d1fp2a2 136 -I--PNADAVLLKY---ILHNWTDKDCLRILKKCKEAVTNDGKRGKVT 177 (244)
T ss_dssp -C--CCCSEEEEES---CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred -C--CCCcEEEEEe---ecccCChHHHHHHHHHHHHHcCcccCCcEEE
Confidence 2 2579999544 555443 4467899999999998 5565
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.25 E-value=1e-06 Score=78.87 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=82.6
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++..+.+.+|.+++|..+|.|..+..+.+.+. +|+|+|..+.++..|++.. ..++.+++++
T Consensus 10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~------------------~~~~~~~~~~ 70 (182)
T d1wg8a2 10 ALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH------------------LPGLTVVQGN 70 (182)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC------------------CTTEEEEESC
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc------------------ccceeEeehH
Confidence 34444568999999999999999999998865 9999999999998887641 2579999999
Q ss_pred hhhcccccC-CCCCceeEEEeccccccccC-------hhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESMQ-IQPHSVDVLVSEWMGYCLLY-------ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l~-~~~~~fDvIvs~~~~~~l~~-------~~~l~~vL~~~~r~LkpgG~li 419 (497)
..++...++ ...+++|.|+... |..-.. ...+...|..+...|+|||.++
T Consensus 71 f~~~~~~l~~~~~~~vdgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ 128 (182)
T d1wg8a2 71 FRHLKRHLAALGVERVDGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLV 128 (182)
T ss_dssp GGGHHHHHHHTTCSCEEEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHcCCCccCEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEE
Confidence 877653221 3356899999752 322111 1234557888899999999987
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.20 E-value=2.1e-06 Score=85.34 Aligned_cols=114 Identities=15% Similarity=-0.004 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC-CCCCCCCceEEEecchhhccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQ-AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE-GNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~-~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~-~~~~~~~~i~~i~gd~~~l~~ 374 (497)
++.+|||..||||..++.+|+ .|+..|+++|+|+.+++.++++++.|++.+...... ........+.+.+.|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~- 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM- 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH-
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh-
Confidence 678999999999999997666 488899999999999999999999998642111000 01111235777888876553
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
......||+|...+.|. +..+|..+.+.++.||+|.+
T Consensus 124 --~~~~~~fDvIDiDPfGs-------~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 124 --AERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp --HHSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEE
T ss_pred --HhhcCcCCcccCCCCCC-------cHHHHHHHHHHhccCCEEEE
Confidence 12356799999876432 24577888888999999884
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=7.1e-06 Score=78.84 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=84.2
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||++||.|.-+..+|.. +...|+|+|+++.-++.+++++++.|+ .++.+...|...
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~--------------~~~~~~~~d~~~ 156 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV--------------SCCELAEEDFLA 156 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC--------------CSEEEEECCGGG
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc--------------cceeeeehhhhh
Confidence 3578999999999999988888765 456899999999999999999999998 579999999887
Q ss_pred cccccCCCCCceeEEEeccc----cccccC----------------hhhH-HHHHHHHhccccCCcEEeccCceeE
Q 010913 372 LGESMQIQPHSVDVLVSEWM----GYCLLY----------------ESML-SSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~----~~~l~~----------------~~~l-~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
+....+ ..++||.|+.... |..-.+ ...+ ..++..+. .|+|||+|+-+||++.
T Consensus 157 ~~~~~~-~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 157 VSPSDP-RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp SCTTCG-GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred hccccc-ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 642111 1357999997642 110000 0111 23444445 4799999999999873
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=1.3e-06 Score=81.84 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=72.6
Q ss_pred HHHHhCCCC-CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSL-MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~-~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..++..... ....+|||||||+|.++..++++ +.-+++++|..+. ++ .... .+++.+
T Consensus 70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~~~-------------~~r~~~ 128 (243)
T d1kyza2 70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DAPS-------------YPGVEH 128 (243)
T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TCCC-------------CTTEEE
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hccc-------------CCceEE
Confidence 344444443 34579999999999999999998 4459999999763 21 1111 368999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.+. .|. .|+++.. ++++. ......+|+++++.|+|||.+++.
T Consensus 129 ~~~d~~~~-----~P~--ad~~~l~---~vlh~~~d~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 129 VGGDMFVS-----IPK--ADAVFMK---WICHDWSDEHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp EECCTTTC-----CCC--CSCEECS---SSSTTSCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred eccccccc-----CCC--cceEEEE---EEeecCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99998653 333 4566633 33333 355778999999999999998743
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=1.3e-06 Score=82.09 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=58.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.|.....+.++..||+||||+|.++..+++.+. +|+|||+++.+++..++.... .+++++
T Consensus 9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~----------------~~~~~i 71 (252)
T d1qyra_ 9 VIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFL----------------GPKLTI 71 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTT----------------GGGEEE
T ss_pred HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhh----------------ccchhH
Confidence 444555555677899999999999999999999876 899999999999877754321 258999
Q ss_pred Eecchhhcc
Q 010913 365 VQGMVEELG 373 (497)
Q Consensus 365 i~gd~~~l~ 373 (497)
+.+|+..++
T Consensus 72 i~~D~l~~~ 80 (252)
T d1qyra_ 72 YQQDAMTFN 80 (252)
T ss_dssp ECSCGGGCC
T ss_pred Hhhhhhhhc
Confidence 999998764
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.99 E-value=9.8e-06 Score=81.88 Aligned_cols=119 Identities=20% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----CC----------CEEEEEeCCHHHHHHHHHHHHhCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----GA----------SRVIAVEASEKMAAVATQIAKDNDFWWDR 349 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G~----------~~V~gvD~S~~~i~~A~~~~~~~gl~~~~ 349 (497)
...+.|...+...++.+|+|..||+|.+...+.++ +. ..++|+|+++.+...|+-++.-.|+..
T Consensus 149 ~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~-- 226 (425)
T d2okca1 149 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT-- 226 (425)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS--
T ss_pred hhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc--
Confidence 34555666556677899999999999998887764 11 249999999999999998887777531
Q ss_pred CCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccC--------------hhhHHHHHHHHhccccCC
Q 010913 350 PQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY--------------ESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 350 ~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~--------------~~~l~~vL~~~~r~Lkpg 415 (497)
....+..+|.... .+..+||+|+++++...... ...-..++..+.+.|+||
T Consensus 227 ----------~~~~i~~~d~l~~-----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~ 291 (425)
T d2okca1 227 ----------DRSPIVCEDSLEK-----EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 291 (425)
T ss_dssp ----------SCCSEEECCTTTS-----CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred ----------ccceeecCchhhh-----hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence 3455677776553 35678999999974321100 011235788889999999
Q ss_pred cEEe
Q 010913 416 GAIL 419 (497)
Q Consensus 416 G~li 419 (497)
|.+.
T Consensus 292 G~~~ 295 (425)
T d2okca1 292 GRAA 295 (425)
T ss_dssp EEEE
T ss_pred CeEE
Confidence 9876
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=1e-05 Score=72.06 Aligned_cols=100 Identities=20% Similarity=0.268 Sum_probs=70.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+.++.+|||+||++|.++..+++. +...|+|+|+.+. ..+ .++.++++++.+.
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i--------------~~~~~~~~d~~~~ 74 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI--------------VGVDFLQGDFRDE 74 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC--------------TTEEEEESCTTSH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc--------------CCceEeecccccc
Confidence 367899999999999999998876 4469999998761 112 5788999998654
Q ss_pred ccc----cCCCCCceeEEEeccccccccC--------hhhHHHHHHHHhccccCCcEEe
Q 010913 373 GES----MQIQPHSVDVLVSEWMGYCLLY--------ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 373 ~~~----l~~~~~~fDvIvs~~~~~~l~~--------~~~l~~vL~~~~r~LkpgG~li 419 (497)
... ......++|+|+|.....+-.. .......+.-+.++|+|||.++
T Consensus 75 ~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV 133 (180)
T d1ej0a_ 75 LVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV 133 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEE
Confidence 210 0124578999999864333111 1112456666789999999998
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.89 E-value=8e-06 Score=75.67 Aligned_cols=118 Identities=13% Similarity=0.218 Sum_probs=71.8
Q ss_pred hcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC
Q 010913 276 ISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRP 350 (497)
Q Consensus 276 l~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~ 350 (497)
++.+.-...|.+.|.. .++++||+||++.|..++.++.. + .++|+|+|+.+.....+.
T Consensus 63 ~k~p~d~~~~~eli~~----~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------------- 125 (232)
T d2bm8a1 63 LKDPDTQAVYHDMLWE----LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------------- 125 (232)
T ss_dssp CSCHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-------------
T ss_pred ccCHHHHHHHHHHHHH----hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-------------
Confidence 3344444455555543 35789999999999877766542 2 359999999764322111
Q ss_pred CCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 351 QSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 351 ~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
...++|+++.||..+......+....+|.|+... ...+...+..+ ...++|+|||++++.
T Consensus 126 ------~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~---~H~~~~v~~~~--~~~~lLk~GG~iIve 185 (232)
T d2bm8a1 126 ------SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN---AHANTFNIMKW--AVDHLLEEGDYFIIE 185 (232)
T ss_dssp ------GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES---SCSSHHHHHHH--HHHHTCCTTCEEEEC
T ss_pred ------ccccceeeeecccccHHHHHHHHhcCCCEEEEcC---CcchHHHHHHH--HHhcccCcCCEEEEE
Confidence 1126899999987554311123345678887543 22233333332 346899999998854
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.69 E-value=4.1e-05 Score=71.27 Aligned_cols=86 Identities=16% Similarity=-0.006 Sum_probs=62.3
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
.+|||.-||.|..++.+|..|+ +|+++|.++.+....++.+....... ........+++++.+|..++- .-
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~-----~~~~~~~~ri~li~~Ds~~~L---~~ 160 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADA-----EIGGWLQERLQLIHASSLTAL---TD 160 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCT-----TTHHHHHHHEEEEESCHHHHS---TT
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCc-----hhHHHHhhhheeecCcHHHHH---hc
Confidence 4899999999999999999998 89999999988777666554321100 000000247999999988763 22
Q ss_pred CCCceeEEEeccccc
Q 010913 379 QPHSVDVLVSEWMGY 393 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~ 393 (497)
...+||+|+..+|..
T Consensus 161 ~~~~~DvIYlDPMFp 175 (250)
T d2oyra1 161 ITPRPQVVYLDPMFP 175 (250)
T ss_dssp CSSCCSEEEECCCCC
T ss_pred cCCCCCEEEECCCCc
Confidence 356799999988754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.51 E-value=0.00045 Score=63.55 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=67.1
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..|.....+.++.+|+|+|||.|..+..++... ...|.|+++--.... . ...+ .....+-+++.
T Consensus 56 ~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e---~--P~~~----------~~~~~ni~~~~ 120 (257)
T d2p41a1 56 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE---E--PIPM----------STYGWNLVRLQ 120 (257)
T ss_dssp HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC---C--CCCC----------CSTTGGGEEEE
T ss_pred HHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc---C--Cccc----------cccccccccch
Confidence 334444556788899999999999999999773 247888887421100 0 0000 00011234444
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccC----hhhHHHHHHHHhccccCCcEEec
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLY----ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~----~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++-.. ..++..+|+|+|.. +-.-.. ......+|.-+.++|+|||.++.
T Consensus 121 ~~~dv~-----~l~~~~~D~vlcDm-~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 121 SGVDVF-----FIPPERCDTLLCDI-GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp CSCCTT-----TSCCCCCSEEEECC-CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred hhhhHH-----hcCCCcCCEEEeeC-CCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence 433211 24678899999973 221111 11223677778899999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.48 E-value=0.00014 Score=64.14 Aligned_cols=105 Identities=26% Similarity=0.374 Sum_probs=66.9
Q ss_pred HHHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc-eEE
Q 010913 288 AILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK-MEV 364 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~-i~~ 364 (497)
.+.+...+.+|.+||-+|||. |.+...+|++ |+.+|+++|.++.-++.|++. |. +. +..
T Consensus 19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga--------------~~vi~~ 80 (182)
T d1vj0a2 19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA--------------DLTLNR 80 (182)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC--------------SEEEET
T ss_pred HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cc--------------eEEEec
Confidence 444556678999999999985 7788888887 888999999999888777653 32 11 111
Q ss_pred Eecchhhcccc-cC-CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEELGES-MQ-IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~-l~-~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...+..+.... .. .....+|+|+-.. + . ...+....++|+|||+++
T Consensus 81 ~~~~~~~~~~~i~~~~~~~g~Dvvid~v-G----~----~~~~~~a~~~l~~~G~iv 128 (182)
T d1vj0a2 81 RETSVEERRKAIMDITHGRGADFILEAT-G----D----SRALLEGSELLRRGGFYS 128 (182)
T ss_dssp TTSCHHHHHHHHHHHTTTSCEEEEEECS-S----C----TTHHHHHHHHEEEEEEEE
T ss_pred cccchHHHHHHHHHhhCCCCceEEeecC-C----c----hhHHHHHHHHhcCCCEEE
Confidence 11121111000 00 2345699998532 1 1 224566678999999986
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.36 E-value=0.00016 Score=64.73 Aligned_cols=104 Identities=21% Similarity=0.108 Sum_probs=69.4
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe--
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ-- 366 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~-- 366 (497)
....+.+|.+||-+|||. |.++..++++ |+.+|+++|.++.-++.|++. |. ..++.
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga----------------~~~~~~~ 78 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----------------EIADLSL 78 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----------------EEEETTS
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc----------------cEEEeCC
Confidence 346788999999999998 6677777776 888999999999888777654 32 12221
Q ss_pred -cch----hhcccccCCCCCceeEEEecccc------ccccChhhHHHHHHHHhccccCCcEEe
Q 010913 367 -GMV----EELGESMQIQPHSVDVLVSEWMG------YCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 -gd~----~~l~~~l~~~~~~fDvIvs~~~~------~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++ .++ .....+|+++-..-. ............+....++++|||+++
T Consensus 79 ~~~~~~~i~~~-----t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~ 137 (195)
T d1kola2 79 DTPLHEQIAAL-----LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIG 137 (195)
T ss_dssp SSCHHHHHHHH-----HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEE
T ss_pred CcCHHHHHHHH-----hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEE
Confidence 111 122 235579999843210 011111223568888999999999987
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00022 Score=73.66 Aligned_cols=124 Identities=15% Similarity=-0.007 Sum_probs=78.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----CC---------------CEEEEEeCCHHHHHHHHHHHHhCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----GA---------------SRVIAVEASEKMAAVATQIAKDND 344 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G~---------------~~V~gvD~S~~~i~~A~~~~~~~g 344 (497)
...+.|...+...++.+|+|..||+|.+...+.+. .. ..++|+|+++.+...|+-++--.|
T Consensus 151 ~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 151 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred chhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 34455555556677889999999999998877653 11 258999999999999988876665
Q ss_pred CCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccc----------cChhh-HHHHHHHHhcccc
Q 010913 345 FWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL----------LYESM-LSSVLFARDQWLK 413 (497)
Q Consensus 345 l~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l----------~~~~~-l~~vL~~~~r~Lk 413 (497)
... +.. ..-.+..++....+ .....+||+|+++++...- ..... -..++..+.+.|+
T Consensus 231 ~~~-------~i~--~~~~~~~~~~l~~d---~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk 298 (524)
T d2ar0a1 231 IEG-------NLD--HGGAIRLGNTLGSD---GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH 298 (524)
T ss_dssp CCC-------BGG--GTBSEEESCTTSHH---HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE
T ss_pred ccc-------ccc--ccchhhhhhhhhhc---ccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcc
Confidence 411 000 01123333332211 1235689999999743111 01111 1247888899999
Q ss_pred CCcEEe
Q 010913 414 PGGAIL 419 (497)
Q Consensus 414 pgG~li 419 (497)
|||++.
T Consensus 299 ~gGr~a 304 (524)
T d2ar0a1 299 PGGRAA 304 (524)
T ss_dssp EEEEEE
T ss_pred ccCcEE
Confidence 999866
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.33 E-value=0.00033 Score=61.23 Aligned_cols=103 Identities=23% Similarity=0.288 Sum_probs=67.9
Q ss_pred HHHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.++....+.+|.+||-+|||. |.++..++++ |+..|+++|.++.-++.|++. |. ..++
T Consensus 19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga----------------~~~i 78 (174)
T d1f8fa2 19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA----------------THVI 78 (174)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC----------------SEEE
T ss_pred HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC----------------eEEE
Confidence 345566788999999999986 5567777776 998999999999888777764 32 1233
Q ss_pred ecchhhcccc-cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 366 QGMVEELGES-MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 366 ~gd~~~l~~~-l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+-.++.+. ..+.++.||+|+-.. + . ...+....++++|+|.++
T Consensus 79 ~~~~~~~~~~i~~~t~gg~D~vid~~-G----~----~~~~~~~~~~~~~~G~i~ 124 (174)
T d1f8fa2 79 NSKTQDPVAAIKEITDGGVNFALEST-G----S----PEILKQGVDALGILGKIA 124 (174)
T ss_dssp ETTTSCHHHHHHHHTTSCEEEEEECS-C----C----HHHHHHHHHTEEEEEEEE
T ss_pred eCCCcCHHHHHHHHcCCCCcEEEEcC-C----c----HHHHHHHHhcccCceEEE
Confidence 2222211100 012345899998432 1 1 345666788999999987
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.26 E-value=0.00016 Score=63.50 Aligned_cols=101 Identities=25% Similarity=0.351 Sum_probs=66.5
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
....+.+|.+||-+|||. |.++..+++. |+.+|+++|.++.-++.|++. |. ..++.-.
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga----------------~~~i~~~ 80 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA----------------TDILNYK 80 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC----------------SEEECGG
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc----------------ccccccc
Confidence 345778999999999997 8888888888 888999999999888777654 22 1222211
Q ss_pred hhhcccc-cC-CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 VEELGES-MQ-IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 ~~~l~~~-l~-~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
-.++.+. .. .....+|+|+-.. + . ...+....++|+|+|.++.
T Consensus 81 ~~~~~~~v~~~t~g~G~D~vid~~-g----~----~~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 81 NGHIEDQVMKLTNGKGVDRVIMAG-G----G----SETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp GSCHHHHHHHHTTTSCEEEEEECS-S----C----TTHHHHHHHHEEEEEEEEE
T ss_pred chhHHHHHHHHhhccCcceEEEcc-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 1111000 00 2345699998532 1 1 2345666789999999983
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.99 E-value=0.00093 Score=58.41 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=67.9
Q ss_pred HHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 289 ILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
+.....+.+|.+||-+|||. |.+++.++++ |+..|+++|.++.-++.|++. |. ..++.
T Consensus 20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga----------------~~~i~ 79 (174)
T d1e3ia2 20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA----------------TDCLN 79 (174)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC----------------SEEEC
T ss_pred HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC----------------CcccC
Confidence 44566788999999999998 8889999988 998999999999877666653 42 12222
Q ss_pred cc-----hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC-cEEe
Q 010913 367 GM-----VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG-GAIL 419 (497)
Q Consensus 367 gd-----~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg-G~li 419 (497)
.. ...... ......+|+++-.. + ....+....+.|+|| |.++
T Consensus 80 ~~~~~~~~~~~~~--~~~~~G~d~vie~~-G--------~~~~~~~a~~~~~~g~G~~v 127 (174)
T d1e3ia2 80 PRELDKPVQDVIT--ELTAGGVDYSLDCA-G--------TAQTLKAAVDCTVLGWGSCT 127 (174)
T ss_dssp GGGCSSCHHHHHH--HHHTSCBSEEEESS-C--------CHHHHHHHHHTBCTTTCEEE
T ss_pred CccchhhhhhhHh--hhhcCCCcEEEEec-c--------cchHHHHHHHHhhcCCeEEE
Confidence 11 111100 01246799998432 1 144677788899996 9987
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00063 Score=59.08 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe-cchh
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ-GMVE 370 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~-gd~~ 370 (497)
.+.+|.+||-+|||+ |.++..++++ |+.+|+++|.++.-++.|++. |. +.+.... .+..
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga--------------~~~~~~~~~~~~ 84 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GA--------------DLVLQISKESPQ 84 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC--------------SEEEECSSCCHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CC--------------cccccccccccc
Confidence 567899999999987 6667777777 888999999999888777653 42 1111111 1111
Q ss_pred hccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+....+ ......+|+|+-.. + . ...+....++++|||+++
T Consensus 85 ~~~~~~~~~~g~g~Dvvid~~-G----~----~~~~~~a~~~~~~gG~iv 125 (171)
T d1pl8a2 85 EIARKVEGQLGCKPEVTIECT-G----A----EASIQAGIYATRSGGTLV 125 (171)
T ss_dssp HHHHHHHHHHTSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEE
T ss_pred cccccccccCCCCceEEEecc-C----C----chhHHHHHHHhcCCCEEE
Confidence 110000 01245789998532 1 1 346677788999999987
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.93 E-value=0.0011 Score=57.17 Aligned_cols=97 Identities=23% Similarity=0.320 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch--
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-- 369 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-- 369 (497)
.+.+|.+||-+|||. |.++..++++ |+ +|+++|.++.-++.|++. |. ...+..-..
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga---------------~~~~~~~~~~~ 82 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GA---------------DVTLVVDPAKE 82 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TC---------------SEEEECCTTTS
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CC---------------cEEEecccccc
Confidence 568899999999995 7777778877 87 999999999888777764 22 222221111
Q ss_pred --hhccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 --EELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 --~~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+....+ ......+|+|+-.. + . ...+....++|+|+|+++
T Consensus 83 ~~~~~~~~~~~~~g~g~D~vid~~-g----~----~~~~~~a~~~~~~~G~iv 126 (170)
T d1e3ja2 83 EESSIIERIRSAIGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLM 126 (170)
T ss_dssp CHHHHHHHHHHHSSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEE
T ss_pred ccchhhhhhhcccccCCceeeecC-C----C----hHHHHHHHHHHhcCCceE
Confidence 0000000 01245789998432 1 1 345666778999999988
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.92 E-value=0.0011 Score=57.48 Aligned_cols=95 Identities=22% Similarity=0.276 Sum_probs=62.7
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc---
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM--- 368 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd--- 368 (497)
.+.+|.+||-+|+|. |.++..++++ |+..|+++|.++.-++.+++. |. ..++..+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga----------------~~~i~~~~~~ 88 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA----------------DHVVDARRDP 88 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC----------------SEEEETTSCH
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc----------------ceeecCcccH
Confidence 457899999999987 5566777766 888999999999777666643 32 1223222
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..... ......+|+|+-.. + . ...+....++|+|||+++
T Consensus 89 ~~~~~~--~~~~~g~d~vid~~-g----~----~~~~~~a~~~l~~~G~iv 128 (172)
T d1h2ba2 89 VKQVME--LTRGRGVNVAMDFV-G----S----QATVDYTPYLLGRMGRLI 128 (172)
T ss_dssp HHHHHH--HTTTCCEEEEEESS-C----C----HHHHHHGGGGEEEEEEEE
T ss_pred HHHHHH--hhCCCCceEEEEec-C----c----chHHHHHHHHHhCCCEEE
Confidence 111110 12345699998532 1 1 335677789999999988
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00035 Score=60.66 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=61.9
Q ss_pred CCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-ch
Q 010913 293 PSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-MV 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-d~ 369 (497)
..+.+|.+||-+|+| .|.++..+++. |+ +|+++|.++.-++.|++. |. + .++.. +-
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga--------------~--~~i~~~~~ 81 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GA--------------D--HYIATLEE 81 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TC--------------S--EEEEGGGT
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CC--------------c--EEeeccch
Confidence 467899999999998 47788888877 88 899999999888777654 32 1 22221 11
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+.. ....+.+|+|+..... .... .+....+.|+|+|+++
T Consensus 82 ~~~~---~~~~~~~d~vi~~~~~---~~~~----~~~~~~~~l~~~G~iv 121 (168)
T d1piwa2 82 GDWG---EKYFDTFDLIVVCASS---LTDI----DFNIMPKAMKVGGRIV 121 (168)
T ss_dssp SCHH---HHSCSCEEEEEECCSC---STTC----CTTTGGGGEEEEEEEE
T ss_pred HHHH---HhhhcccceEEEEecC---Cccc----hHHHHHHHhhccceEE
Confidence 1111 1124579998853211 1110 1334578999999988
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.78 E-value=0.0021 Score=56.04 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=41.4
Q ss_pred HHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 289 ILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
+++...+.+|.+||-+|||. |.++..++++ |+.+|+++|.++.-++.|++.
T Consensus 19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence 45566789999999999996 5567777776 988999999999888777653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.0019 Score=56.09 Aligned_cols=100 Identities=16% Similarity=0.300 Sum_probs=64.2
Q ss_pred HHhCCCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EE
Q 010913 289 ILENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EV 364 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~ 364 (497)
+.....+.+|.+||-.|+ | .|.+++.+|++ |+ +|++++.++.-.+.+++ .|. +.+ ..
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga--------------~~vi~~ 80 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGA--------------HEVFNH 80 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC--------------SEEEET
T ss_pred HHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCc--------------cccccc
Confidence 445567789999999997 3 46778888887 88 89999999876655543 443 111 11
Q ss_pred Eecchhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-..+..+ +.. ......+|+|+... . ...+....++|+|+|+++
T Consensus 81 ~~~~~~~~i~~--~t~~~g~d~v~d~~--------g--~~~~~~~~~~l~~~G~iv 124 (174)
T d1yb5a2 81 REVNYIDKIKK--YVGEKGIDIIIEML--------A--NVNLSKDLSLLSHGGRVI 124 (174)
T ss_dssp TSTTHHHHHHH--HHCTTCEEEEEESC--------H--HHHHHHHHHHEEEEEEEE
T ss_pred ccccHHHHhhh--hhccCCceEEeecc--------c--HHHHHHHHhccCCCCEEE
Confidence 1111111 110 12456799999542 1 235666778999999988
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.76 E-value=0.00062 Score=58.72 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=37.1
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-+|||. |.++..+++. |+ +|+++|.++.-++.+++
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARK 69 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhc
Confidence 4568899999999986 7778888887 76 99999999987776664
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.74 E-value=0.0011 Score=63.79 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+.+|||||+|.|.+|..+..+ ++.+|++||+++..+...++... .++++++.+|+..+
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-----------------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-----------------GSPLQILKRDPYDW 102 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-----------------TSSCEEECSCTTCH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-----------------CCCcEEEeCchhhc
Confidence 35779999999999999999987 56799999999999988876642 14789999998755
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.63 E-value=0.0025 Score=55.66 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=41.9
Q ss_pred HHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 289 ILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
+.....+.+|.+||-+|||. |.++..++++ |+.+|+++|.++.-++.|++.
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 45556678999999999996 5566666766 888999999999999888876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0015 Score=56.34 Aligned_cols=95 Identities=24% Similarity=0.220 Sum_probs=61.7
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.+|.+||-+|||. |.++..++++ |+ +++++|.++.-.+.+++. |. + .++...-
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Ga--------------d--~~i~~~~ 83 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GA--------------D--EVVNSRN 83 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TC--------------S--EEEETTC
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CC--------------c--EEEECch
Confidence 35678999999999986 7778888887 88 778899998766666543 32 1 2232221
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.... ......+|+++-.. + .. ..+....+.|+|+|+++
T Consensus 84 ~~~~---~~~~~~~D~vid~~-g----~~----~~~~~~~~~l~~~G~iv 121 (168)
T d1uufa2 84 ADEM---AAHLKSFDFILNTV-A----AP----HNLDDFTTLLKRDGTMT 121 (168)
T ss_dssp HHHH---HTTTTCEEEEEECC-S----SC----CCHHHHHTTEEEEEEEE
T ss_pred hhHH---HHhcCCCceeeeee-e----cc----hhHHHHHHHHhcCCEEE
Confidence 1111 12346799998532 1 11 12445568999999988
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.24 E-value=0.0037 Score=53.80 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 292 NPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
...+.++.+||-+||| .|.++..++++ |...|++++.++.-++.+++. |. . .++..+
T Consensus 22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga---------------~-~~i~~~ 81 (170)
T d1jvba2 22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA---------------D-YVINAS 81 (170)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC---------------S-EEEETT
T ss_pred HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CC---------------c-eeeccC
Confidence 3467899999999974 35566666665 878999999999877777754 32 1 222222
Q ss_pred hhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-.++.+.+ ...+..||+|+-.. + -...+....++|+|||.++
T Consensus 82 ~~~~~~~~~~~~~~~~~d~vid~~-g--------~~~~~~~a~~~l~~~G~iv 125 (170)
T d1jvba2 82 MQDPLAEIRRITESKGVDAVIDLN-N--------SEKTLSVYPKALAKQGKYV 125 (170)
T ss_dssp TSCHHHHHHHHTTTSCEEEEEESC-C--------CHHHHTTGGGGEEEEEEEE
T ss_pred CcCHHHHHHHHhhcccchhhhccc-c--------cchHHHhhhhhcccCCEEE
Confidence 11111000 02356799998542 1 1345566789999999987
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.93 E-value=0.0059 Score=52.09 Aligned_cols=44 Identities=27% Similarity=0.370 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
.+.+|.+||-.|||+ |.+...+++. |+ +|++++.++.-++.+++
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE 69 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh
Confidence 467899999999997 5566677776 67 89999999987766654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.70 E-value=0.019 Score=49.23 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=63.8
Q ss_pred HHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 289 ILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
+.+...+.+|.+||-+|||. |.++..++++ |+..|+++|.++.-.+.|++. |. -.++.
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga----------------~~~i~ 79 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA----------------TECIN 79 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC----------------SEEEC
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC----------------cEEEe
Confidence 45566789999999999984 4456666666 988999999999877777754 32 12221
Q ss_pred cc-----hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 367 GM-----VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 gd-----~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. +..... ......+|+|+-.. + . ...+.....++++||.++
T Consensus 80 ~~~~~~~~~~~~~--~~~~~g~D~vid~~-G----~----~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 80 PQDFSKPIQEVLI--EMTDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVS 126 (176)
T ss_dssp GGGCSSCHHHHHH--HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEE
T ss_pred CCchhhHHHHHHH--HHcCCCCcEeeecC-C----C----HHHHHHHHHhhcCCceeE
Confidence 11 111000 01245799999532 1 1 345666778899987765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.63 E-value=0.0037 Score=53.92 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|+-||+|. |..+...|+. |+ .|+++|.++..++..+.... .++.....+-..+.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~------------------~~~~~~~~~~~~l~ 90 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG------------------SRVELLYSNSAEIE 90 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG------------------GGSEEEECCHHHHH
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc------------------ccceeehhhhhhHH
Confidence 3678999999997 6667776666 88 99999999988877666542 34566555554443
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. -...|+||+..+ +.....+.-+-+++.+.+|||..++
T Consensus 91 ~~----~~~aDivI~aal---ipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 91 TA----VAEADLLIGAVL---VPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp HH----HHTCSEEEECCC---CTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred Hh----hccCcEEEEeee---cCCcccCeeecHHHHhhcCCCcEEE
Confidence 21 236899997642 2222222223456678899999887
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.023 Score=48.81 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=64.6
Q ss_pred HHHhCCCCCCCCEEEEEcCCC--CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 288 AILENPSLMKGAVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGt--G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.+...+.+|.+||-.|+|. |.+...+|+. |+ +|++++.|+.-.+.+++. |- + .+
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----Ga--------------~--~v 77 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GA--------------W--QV 77 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TC--------------S--EE
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----CC--------------e--EE
Confidence 344556778999999997775 5677788887 87 999999999888777654 32 1 22
Q ss_pred Eecchhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+-.++.+.+ ......+|+|+... + .+ .+......|+|+|.++
T Consensus 78 i~~~~~d~~~~v~~~t~g~g~d~v~d~~-g-----~~----~~~~~~~~l~~~G~~v 124 (179)
T d1qora2 78 INYREEDLVERLKEITGGKKVRVVYDSV-G-----RD----TWERSLDCLQRRGLMV 124 (179)
T ss_dssp EETTTSCHHHHHHHHTTTCCEEEEEECS-C-----GG----GHHHHHHTEEEEEEEE
T ss_pred EECCCCCHHHHHHHHhCCCCeEEEEeCc-c-----HH----HHHHHHHHHhcCCeee
Confidence 221111211000 02356799988542 1 11 3455678999999876
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.24 E-value=0.02 Score=49.36 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=62.7
Q ss_pred HHHhCCCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 288 AILENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.....+.+|.+||-.|+ | .|.++..+|+. |+ +|+++.-++.-.+.++ ..|. +. +
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~----~~Ga--------------~~--v 74 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGV--------------EY--V 74 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCC--------------SE--E
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccc----cccc--------------cc--c
Confidence 3445667789999999884 3 36677788887 87 8888888876555444 3443 22 2
Q ss_pred Eecchhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 365 VQGMVEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 365 i~gd~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+...-.++.+.+ ......||+|+... . ...+....++|+|+|+++.
T Consensus 75 i~~~~~~~~~~v~~~t~~~g~d~v~d~~-----g-----~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 75 GDSRSVDFADEILELTDGYGVDVVLNSL-----A-----GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp EETTCSTHHHHHHHHTTTCCEEEEEECC-----C-----THHHHHHHHTEEEEEEEEE
T ss_pred ccCCccCHHHHHHHHhCCCCEEEEEecc-----c-----chHHHHHHHHhcCCCEEEE
Confidence 221111111000 02356799999642 1 1245556789999999883
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.96 E-value=0.0083 Score=51.75 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=58.9
Q ss_pred CCCCCCCEEEEEcC-CC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc-
Q 010913 293 PSLMKGAVVMDIGC-GT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM- 368 (497)
Q Consensus 293 ~~~~~~~~VLDvGC-Gt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd- 368 (497)
..+.+|.+||-.|+ |. |.++..+|++ |+ +|++++.++.-.+.+++ .|. +.+ +-..+
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa--------------~~~-i~~~~~ 82 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGA--------------EEA-ATYAEV 82 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTC--------------SEE-EEGGGH
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----ccc--------------cee-eehhhh
Confidence 56789999999985 33 5677778887 87 89999999876655553 443 222 11122
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.... .....+|+|+-. .+ . .+....++|+|+|+++
T Consensus 83 ~~~~-----~~~~g~D~v~d~-~G------~----~~~~~~~~l~~~G~~v 117 (171)
T d1iz0a2 83 PERA-----KAWGGLDLVLEV-RG------K----EVEESLGLLAHGGRLV 117 (171)
T ss_dssp HHHH-----HHTTSEEEEEEC-SC------T----THHHHHTTEEEEEEEE
T ss_pred hhhh-----hccccccccccc-cc------h----hHHHHHHHHhcCCcEE
Confidence 1222 124579999852 22 1 2345568999999988
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.85 E-value=0.021 Score=51.72 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=41.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
.+|..|||.-||+|..+..+.+.|- +.+|+|+++..++.|++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 6899999999999999999999886 99999999999999999874
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.75 E-value=0.028 Score=52.61 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=52.2
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
+|||+-||.|.+++.+.++|...|.++|+++.+++..+.+. .-.++.+|+.++.. -.
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~--------------------~~~~~~~Di~~~~~---~~ 58 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH--------------------SAKLIKGDISKISS---DE 58 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC--------------------CSEEEESCTTTSCG---GG
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC--------------------CCCCccCChhhCCH---hH
Confidence 69999999999999999999977889999997776555442 22567799988752 12
Q ss_pred CCceeEEEecc
Q 010913 380 PHSVDVLVSEW 390 (497)
Q Consensus 380 ~~~fDvIvs~~ 390 (497)
-..+|+++..+
T Consensus 59 ~~~~dll~~g~ 69 (324)
T d1dcta_ 59 FPKCDGIIGGP 69 (324)
T ss_dssp SCCCSEEEECC
T ss_pred cccccEEeecc
Confidence 34689999654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.70 E-value=0.018 Score=50.04 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=61.7
Q ss_pred HHhCCCCCCCCEEEEEcCCC--CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 289 ILENPSLMKGAVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt--G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.......+|.+||--|++. |.+++.+|+. |+ +|+++--|+.-.+.+++. |- +.+.-.
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~l----Ga--------------~~vi~~ 83 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----GA--------------KEVLAR 83 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----TC--------------SEEEEC
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhc----cc--------------ceeeec
Confidence 44556667889999999755 5677788877 77 899999988777666543 42 111111
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.....+.. ....++.+|+|+-.. + ...+....++|+|||+++
T Consensus 84 ~~~~~~~~--~~~~~~gvD~vid~v-g---------g~~~~~~l~~l~~~Griv 125 (176)
T d1xa0a2 84 EDVMAERI--RPLDKQRWAAAVDPV-G---------GRTLATVLSRMRYGGAVA 125 (176)
T ss_dssp C-----------CCSCCEEEEEECS-T---------TTTHHHHHHTEEEEEEEE
T ss_pred chhHHHHH--HHhhccCcCEEEEcC-C---------chhHHHHHHHhCCCceEE
Confidence 11111110 123467899998542 1 113556678999999998
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.59 E-value=0.076 Score=45.65 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=64.8
Q ss_pred HHHhCCCCCCCCEEEEEcCCC--CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 288 AILENPSLMKGAVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGt--G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.....+.+|.+||-.|+|. |..+..+++. |+ +|+++.-++.-.+.+++ .|. + .+
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~----~Ga--------------~--~v 78 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGF--------------D--AA 78 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC--------------S--EE
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh----hhh--------------h--hh
Confidence 345566788999999989876 4567778887 77 99999999876655544 342 1 12
Q ss_pred Eecchhhcccc--cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEELGES--MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~--l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+-+++.+. .......+|+|+-.. + ...+....++|+|||.++
T Consensus 79 i~~~~~~~~~~~~~~~~~~Gvd~v~D~v-G---------~~~~~~~~~~l~~~G~~v 125 (182)
T d1v3va2 79 FNYKTVNSLEEALKKASPDGYDCYFDNV-G---------GEFLNTVLSQMKDFGKIA 125 (182)
T ss_dssp EETTSCSCHHHHHHHHCTTCEEEEEESS-C---------HHHHHHHGGGEEEEEEEE
T ss_pred cccccccHHHHHHHHhhcCCCceeEEec-C---------chhhhhhhhhccCCCeEE
Confidence 22111111000 012456799999432 1 235677889999999988
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.51 E-value=0.092 Score=44.24 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=56.4
Q ss_pred EEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 300 VVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 300 ~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+|.=||+|. +.++..+.+.|. +|+++|.++..++.|++ .++ +.....+.+.+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~----~~~----------------~~~~~~~~~~~----- 55 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQL----------------VDEAGQDLSLL----- 55 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTS----------------CSEEESCGGGG-----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH----hhc----------------cceeeeecccc-----
Confidence 577788884 345666777787 99999999887765554 332 11122223222
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...|+|+... .......++.++...|+|+.+++
T Consensus 56 ---~~~DiIilav------p~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 56 ---QTAKIIFLCT------PIQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp ---TTCSEEEECS------CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ---cccccccccC------cHhhhhhhhhhhhhhccccccee
Confidence 4579988432 34567789999999999988775
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.41 E-value=0.018 Score=53.91 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=42.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~ 343 (497)
.+|.+|||.-||+|..+..+.+.|- +.+|+|+++..++.|++++...
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 6889999999999999999999987 9999999999999999887543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.39 E-value=0.099 Score=50.26 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=36.2
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccC------------------------------hhhHHHHHHHHhccccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY------------------------------ESMLSSVLFARDQWLKP 414 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~------------------------------~~~l~~vL~~~~r~Lkp 414 (497)
+.|....- -+|.+++++++|....+.|.. ..++..+|..+.+-|+|
T Consensus 126 vpGSFY~r----LfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 201 (359)
T d1m6ex_ 126 VPGSFYGR----LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP 201 (359)
T ss_dssp EESCSSSC----CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT
T ss_pred cCCchhhh----cCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555442 278999999998652222210 23667899999999999
Q ss_pred CcEEec
Q 010913 415 GGAILP 420 (497)
Q Consensus 415 gG~li~ 420 (497)
||++++
T Consensus 202 GG~mvl 207 (359)
T d1m6ex_ 202 GGRMVL 207 (359)
T ss_dssp TCEEEE
T ss_pred CcEEEE
Confidence 999984
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.28 E-value=0.092 Score=44.39 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=57.4
Q ss_pred EEEEEcCCC-C-HhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 300 VVMDIGCGT-G-ILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 300 ~VLDvGCGt-G-~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+|+=||||. | .++..+.+.|. .+|+|+|.++..++.|++. +. +.....+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~----------------~~~~~~~~~~~---- 58 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI----------------IDEGTTSIAKV---- 58 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS----------------CSEEESCGGGG----
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc----------------chhhhhhhhhh----
Confidence 588899986 3 35666666674 4899999999888776654 22 22222222221
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.....|+|+.. .+......++..+...++++.+++
T Consensus 59 --~~~~~dlIila------~p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 59 --EDFSPDFVMLS------SPVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp --GGTCCSEEEEC------SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred --hcccccccccc------CCchhhhhhhhhhhcccccccccc
Confidence 23457998843 234566778889999999886665
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.28 E-value=0.029 Score=52.95 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..+.+|||+-||-|.+++.+.++|..-|.++|+++.+++..+.+.. .. .++|+.++..
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~------------------~~---~~~Di~~~~~- 66 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG------------------EK---PEGDITQVNE- 66 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS------------------CC---CBSCGGGSCG-
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC------------------CC---CcCchhcCch-
Confidence 4678999999999999999999999788899999988877666641 11 2477777652
Q ss_pred cCCCCCceeEEEecc
Q 010913 376 MQIQPHSVDVLVSEW 390 (497)
Q Consensus 376 l~~~~~~fDvIvs~~ 390 (497)
-....+|+|+..+
T Consensus 67 --~~~~~~Dll~ggp 79 (327)
T d2c7pa1 67 --KTIPDHDILCAGF 79 (327)
T ss_dssp --GGSCCCSEEEEEC
T ss_pred --hhcceeeeeeccc
Confidence 2234689999654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=94.21 E-value=0.046 Score=46.77 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=62.4
Q ss_pred HHhCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 289 ILENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+..+....++.+||--|++ .|.++..+|++ |+ +|+++--|+.-.+.+++. |. +.+ +
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Ga--------------d~v--i 73 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GA--------------SEV--I 73 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TC--------------SEE--E
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----cc--------------cce--E
Confidence 4555555567778877753 46778888888 98 899999998766666544 32 222 2
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+-...........+.+|+|+-.. + ...+.+..+.|+|+|+++
T Consensus 74 ~~~~~~~~~~~~~~~~gvd~vid~v-g---------g~~~~~~~~~l~~~G~iv 117 (167)
T d1tt7a2 74 SREDVYDGTLKALSKQQWQGAVDPV-G---------GKQLASLLSKIQYGGSVA 117 (167)
T ss_dssp EHHHHCSSCCCSSCCCCEEEEEESC-C---------THHHHHHHTTEEEEEEEE
T ss_pred eccchhchhhhcccCCCceEEEecC-c---------HHHHHHHHHHhccCceEE
Confidence 2111101100123456799998432 1 235667789999999988
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.19 E-value=0.031 Score=51.22 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=43.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~ 343 (497)
.+|..|||.-||+|..++++.+.|- +.+|+|+++...+.|++++...
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999887 9999999999999999998653
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.12 Score=47.23 Aligned_cols=81 Identities=14% Similarity=0.203 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++|++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.++..+. +.++.++++|+.+.
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-------------~~~~~~~~~Dls~~ 73 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGY-------------PGTLIPYRCDLSNE 73 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-------------SSEEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CceEEEEEccCCCH
Confidence 579999999999987 4667777899 899999999888877777766654 24788889998764
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+.+|++|.+.
T Consensus 74 ~~v~~~v~~~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 74 EDILSMFSAIRSQHSGVDICINNA 97 (257)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECC
T ss_pred HHHHHHHHHHHHhcCCCCEEEecc
Confidence 310 001135689998764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.65 E-value=0.19 Score=43.31 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCCCCCC--CEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 292 NPSLMKG--AVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 292 ~~~~~~~--~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
...+.+| .+||-.|+ |.|.+++.+|+. |+..|+++..++..... ..+..|. + .++.
T Consensus 23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~---l~~~~ga--------------d--~vi~ 83 (187)
T d1vj1a2 23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLF---LTSELGF--------------D--AAVN 83 (187)
T ss_dssp HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHH---HHHHSCC--------------S--EEEE
T ss_pred HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhh---hhhcccc--------------e--EEee
Confidence 3344555 78999884 568899999997 98889988888654432 2233442 1 2222
Q ss_pred c---chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 367 G---MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 g---d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
. +..+.-. ...+..+|+|+-.. + ...+....++|+|+|+++
T Consensus 84 ~~~~~~~~~~~--~~~~~GvDvv~D~v-G---------g~~~~~~~~~l~~~G~iv 127 (187)
T d1vj1a2 84 YKTGNVAEQLR--EACPGGVDVYFDNV-G---------GDISNTVISQMNENSHII 127 (187)
T ss_dssp TTSSCHHHHHH--HHCTTCEEEEEESS-C---------HHHHHHHHTTEEEEEEEE
T ss_pred ccchhHHHHHH--HHhccCceEEEecC-C---------chhHHHHhhhccccccEE
Confidence 2 2221111 11246799999432 1 235677789999999997
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.64 E-value=0.079 Score=45.06 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCH-hHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 288 AILENPSLMKGAVVMDIGCGTGI-LSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~-ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
.+.....+.+|.+||-+|||.+. ++..++++ |+..|+++|.++.-++.|++
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 34556678999999999999854 44444444 88899999999987776664
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.047 Score=51.47 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCC--EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGAS--RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~--~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+.+|+|+.||.|.+++.+.++|.. -|.++|+.+.+++..+.+. +...++.+|+.++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-------------------~~~~~~~~di~~~~~~ 62 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-------------------PHTQLLAKTIEGITLE 62 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------------------TTSCEECSCGGGCCHH
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-------------------CCCCcccCchhhCCHh
Confidence 458999999999999998888873 4789999998776655542 2345677888766421
Q ss_pred cCCCCCceeEEEecc
Q 010913 376 MQIQPHSVDVLVSEW 390 (497)
Q Consensus 376 l~~~~~~fDvIvs~~ 390 (497)
.++...+|+++..+
T Consensus 63 -~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 63 -EFDRLSFDMILMSP 76 (343)
T ss_dssp -HHHHHCCSEEEECC
T ss_pred -HcCCCCccEEEeec
Confidence 12234689999754
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=92.19 E-value=0.13 Score=46.83 Aligned_cols=116 Identities=15% Similarity=0.053 Sum_probs=74.7
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHcCC-----------------------------------------CEEEEEeCC
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGA-----------------------------------------SRVIAVEAS 329 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~G~-----------------------------------------~~V~gvD~S 329 (497)
.......+..++|--||+|.+.+.+|-... ..++|.|++
T Consensus 44 ~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d 123 (249)
T d1o9ga_ 44 ARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSY 123 (249)
T ss_dssp HTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred hhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccC
Confidence 344445667899999999999887665311 135688888
Q ss_pred HHHHHHH---HHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc-CCCCCceeEEEeccc-cccccCh-----h
Q 010913 330 EKMAAVA---TQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-QIQPHSVDVLVSEWM-GYCLLYE-----S 399 (497)
Q Consensus 330 ~~~i~~A---~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l-~~~~~~fDvIvs~~~-~~~l~~~-----~ 399 (497)
+.++..| ++++...|+ ...|.+.+.|+.+..... ..++...++||+++. |.=+... .
T Consensus 124 ~~ai~~A~~~r~n~~~Agl-------------~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~ 190 (249)
T d1o9ga_ 124 LEAAQAARRLRERLTAEGG-------------ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQ 190 (249)
T ss_dssp HHHHHHHHHHHHHHHHTTS-------------SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHcCC-------------CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHH
Confidence 8888887 457888887 357899999886543100 013466799999973 2223211 2
Q ss_pred hHHHHHHHHhccccCCcEEe
Q 010913 400 MLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 400 ~l~~vL~~~~r~LkpgG~li 419 (497)
.+..+...+.+.|.....++
T Consensus 191 ~~~~~~~~l~~~~p~~s~~~ 210 (249)
T d1o9ga_ 191 PVAGLLRSLASALPAHAVIA 210 (249)
T ss_dssp HHHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHHccCCCCcEEE
Confidence 35566666777775444444
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.93 E-value=0.047 Score=47.36 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
.++.+||-||+|+ |..+...|.. |+ .|+++|.++..++..+..
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL 71 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 3578999999998 5566666655 88 999999998766655543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.83 E-value=0.23 Score=45.15 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.++..| .++.++.+|+.+.
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g---------------~~~~~~~~Dv~~~ 66 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG---------------VEARSYVCDVTSE 66 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT---------------SCEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEccCCCH
Confidence 579999999999886 5677888898 89999999998888887777665 3688888888654
Q ss_pred cc------ccCCCCCceeEEEec
Q 010913 373 GE------SMQIQPHSVDVLVSE 389 (497)
Q Consensus 373 ~~------~l~~~~~~fDvIvs~ 389 (497)
.. .+.-.-+..|++|.+
T Consensus 67 ~~v~~~~~~~~~~~g~iDilVnn 89 (260)
T d1zema1 67 EAVIGTVDSVVRDFGKIDFLFNN 89 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCeehhh
Confidence 31 000112579999875
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.48 Score=40.95 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=71.7
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCC-CCCCCCCCCceEEEecc
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQ-SEGNINNAGKMEVVQGM 368 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~-------gl~~~~~~-~~~~~~~~~~i~~i~gd 368 (497)
++|--||+|+ | .++..++.+|. .|+.+|.++..++.+++.+... ++...... .......-.++.+.. +
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence 5788999987 3 35666777798 9999999999998887766431 21000000 000000001222222 2
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeec
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG 431 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~ 431 (497)
..+. -...|+|+=. .....+--..++.++.++++|+.+|..++.++....+.
T Consensus 83 ~~~a-------~~~ad~ViEa----v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la 134 (192)
T d1f0ya2 83 AASV-------VHSTDLVVEA----IVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 134 (192)
T ss_dssp HHHH-------TTSCSEEEEC----CCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHH
T ss_pred hHhh-------hcccceehhh----cccchhHHHHHHHHHhhhcccCceeeccCcccccchhh
Confidence 2221 2357888743 23344556789999999999999998777766554443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.61 E-value=0.22 Score=45.66 Aligned_cols=81 Identities=23% Similarity=0.228 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++|+++|-.|++.|+ ++..+++.|+ +|+.++.++.-++.+.+.+...+.. ..++.++.+|+.+.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~------------~~~~~~~~~Dvs~~ 69 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVS------------EKQVNSVVADVTTE 69 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCC------------GGGEEEEECCTTSH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CCceEEEEccCCCH
Confidence 678999999999886 5677888898 8999999999888888877766542 24688999988664
Q ss_pred ccc------cCCCCCceeEEEec
Q 010913 373 GES------MQIQPHSVDVLVSE 389 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~ 389 (497)
..- +.-.-+.+|++|.+
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnn 92 (272)
T d1xkqa_ 70 DGQDQIINSTLKQFGKIDVLVNN 92 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCceEEEeC
Confidence 310 00112578999976
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.27 Score=44.35 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..|++||-.|++.|+ ++..+++.|+ +|+.+|.++.-++...+.+...+ .++.++.+|+.+.
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~---------------~~~~~~~~Dvs~~ 68 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG---------------AKVHTFVVDCSNR 68 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEeeCCCH
Confidence 578999999999997 6778888899 89999999988877777776654 4788999998776
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-..+..|+++.+.
T Consensus 69 ~~v~~~~~~i~~~~g~idilinna 92 (244)
T d1yb1a_ 69 EDIYSSAKKVKAEIGDVSILVNNA 92 (244)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECC
T ss_pred HHHHHHHHHHHHHcCCCceeEeec
Confidence 420 001245699988764
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=91.42 E-value=0.7 Score=42.83 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=81.2
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+|+..+-+.+........ ..|+.+|||-=.-...+...+..+++=||. +.+++.-++.+...+...
T Consensus 72 ~~Rtr~~D~~~~~~~~~g~-~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~----------- 138 (297)
T d2uyoa1 72 AVRTNFFDTYFNNAVIDGI-RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTP----------- 138 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCC-----------
T ss_pred HHHHHHHHHHHHHHHhhCC-CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCC-----------
Confidence 3555555555544332222 345569999766555553222347888886 667777777777766421
Q ss_pred CCceEEEecchhhc-ccc---cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 359 AGKMEVVQGMVEEL-GES---MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 359 ~~~i~~i~gd~~~l-~~~---l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
..+..++..|+.+- ... ..+.+...=+++++.+.+. +.+.....+|..+.....||+.|+++..
T Consensus 139 ~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl~i~EGvl~Y-L~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 139 TADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLMY-LPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp SSEEEEEECCTTSCHHHHHHHTTCCTTSCEEEEECSCGGG-SCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CceEEEecccccchHHHHHHhcCCCCCCCEEEEEcccccc-CCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 24567777776531 111 1133455567777765443 3567789999999999999999987643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.31 E-value=0.32 Score=39.14 Aligned_cols=90 Identities=10% Similarity=0.096 Sum_probs=52.5
Q ss_pred EEEEEcCCCCHhHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 300 VVMDIGCGTGILSLFAA----QAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la----~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+|+-+|+| .++..++ +.|. .|+.+|.++..++.+.+. . .+.++.||..+...-
T Consensus 2 ~IvI~G~G--~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~-----------------~~~vi~Gd~~~~~~l 58 (132)
T d1lssa_ 2 YIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I-----------------DALVINGDCTKIKTL 58 (132)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C-----------------SSEEEESCTTSHHHH
T ss_pred EEEEECCC--HHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---h-----------------hhhhccCcccchhhh
Confidence 57777765 4444444 4576 899999999887765543 1 357888988665311
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
....-..+|++++.. ......-++....+.+.+..++
T Consensus 59 ~~~~i~~a~~vv~~t------~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 59 EDAGIEDADMYIAVT------GKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp HHTTTTTCSEEEECC------SCHHHHHHHHHHHHHTTCCCEE
T ss_pred hhcChhhhhhhcccC------CcHHHHHHHHHHHHHcCCceEE
Confidence 123346788888532 1112222333344556776444
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.82 E-value=0.17 Score=43.04 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=38.1
Q ss_pred HHhCCCCCCCCEEEEEcCCCCH-hHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 289 ILENPSLMKGAVVMDIGCGTGI-LSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~-ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
+.....+.+|.+||-+|+|.+. +...+++. |+.+|+++|.++.-.+.+++.
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 4556678999999999997533 34444444 888999999999877766654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.75 E-value=0.37 Score=43.73 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|++||-.|++.|+ ++..+++.|+ +|+.++.++.-++.+.+.++..+. .+.++.+|+.+.
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~---------------~~~~~~~D~s~~ 67 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL---------------NVEGSVCDLLSR 67 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---------------CEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC---------------CceEEEeecCCH
Confidence 479999999999886 5667788898 999999999888888887777663 678888888665
Q ss_pred ccc-------cCCCCCceeEEEecc
Q 010913 373 GES-------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~-------l~~~~~~fDvIvs~~ 390 (497)
..- .....+..|+++.+.
T Consensus 68 ~~~~~~~~~~~~~~~g~idilinna 92 (258)
T d1ae1a_ 68 TERDKLMQTVAHVFDGKLNILVNNA 92 (258)
T ss_dssp HHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCcEEEeccc
Confidence 410 011235789988753
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.27 E-value=0.33 Score=44.07 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++|+++|-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+.. ..++.++.+|+.+.
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~------------~~~~~~~~~Dvt~~ 69 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVS------------EQNVNSVVADVTTD 69 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC------------GGGEEEEECCTTSH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC------------cCceEEEEccCCCH
Confidence 578999999999887 5677888898 8999999998888777777666542 24689999998654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-++.|++|.+.
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnA 93 (264)
T d1spxa_ 70 AGQDEILSTTLGKFGKLDILVNNA 93 (264)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCEeeccc
Confidence 310 001125789998763
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=90.25 E-value=0.42 Score=43.34 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++.-++.+.+.+...+ .++.++.+|+.+.
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g---------------~~~~~~~~Dv~~~ 69 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG---------------FKVEASVCDLSSR 69 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CEEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CCceEEEeeCCCH
Confidence 479999999999886 5777888898 89999999988887777776665 3788888888653
Q ss_pred cc------cc-CCCCCceeEEEecc
Q 010913 373 GE------SM-QIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~------~l-~~~~~~fDvIvs~~ 390 (497)
.. .+ .....+.|++|.+.
T Consensus 70 ~~v~~~~~~~~~~~~~~idilvnnA 94 (259)
T d2ae2a_ 70 SERQELMNTVANHFHGKLNILVNNA 94 (259)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCceEEEECC
Confidence 31 00 00134799999763
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.21 E-value=0.33 Score=44.38 Aligned_cols=82 Identities=23% Similarity=0.243 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++|+++|-.|++.|+ ++..+++.|+ +|+.+|.++.-++.+.+.+...+.. ..++.++.+|+.+.
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~------------~~~~~~~~~Dv~~~ 68 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVP------------AEKINAVVADVTEA 68 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC------------GGGEEEEECCTTSH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCC------------CcceEEEEeeCCCH
Confidence 578999999999886 5677788898 8999999998888777777766542 24788999998665
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- ..-.-+++|++|.+.
T Consensus 69 ~~v~~~~~~~~~~~G~iDilVnnA 92 (274)
T d1xhla_ 69 SGQDDIINTTLAKFGKIDILVNNA 92 (274)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCceEEEeec
Confidence 310 000125789999763
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.05 E-value=0.4 Score=43.43 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.+...+. ..++.++.+|+.+.
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~-------------~~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAP-------------DAEVLTTVADVSDE 67 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCT-------------TCCEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCC-------------CCeEEEEeccCCCH
Confidence 578999999999987 5778888898 899999999888776665544332 24788889988664
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- ..-.-+..|++|.+.
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 68 AQVEAYVTATTERFGRIDGFFNNA 91 (258)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 310 000125789999763
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=89.95 E-value=0.77 Score=39.21 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=58.4
Q ss_pred HHHhCCCCCCCCEEEEEcCCC---CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 288 AILENPSLMKGAVVMDIGCGT---GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGt---G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.....+.+|.+||-+.+|+ |..++.+|++ |+ +|+++--++...+...+.++..|. +.
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa--------------d~-- 81 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA--------------TQ-- 81 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC--------------SE--
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc--------------cE--
Confidence 344556778898888884443 4567778887 98 788774443333334444455553 12
Q ss_pred EEecc---hhhcccc----cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 364 VVQGM---VEELGES----MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 364 ~i~gd---~~~l~~~----l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.-+ ..++... .......+|+|+-.. . ...+....+.|+|+|+++
T Consensus 82 vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~v------g----~~~~~~~~~~l~~~G~~v 134 (189)
T d1gu7a2 82 VITEDQNNSREFGPTIKEWIKQSGGEAKLALNCV------G----GKSSTGIARKLNNNGLML 134 (189)
T ss_dssp EEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESS------C----HHHHHHHHHTSCTTCEEE
T ss_pred EEeccccchhHHHHHHHHHHhhccCCceEEEECC------C----cchhhhhhhhhcCCcEEE
Confidence 22221 1111000 001245699998431 1 123455568999999988
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.94 E-value=0.34 Score=44.09 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.+... .++.++.+|+.+.
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~----------------~~~~~~~~Dv~~~ 66 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP----------------DVISFVHCDVTKD 66 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT----------------TTEEEEECCTTCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCC----------------CceEEEEccCCCH
Confidence 579999999999886 4666777898 8999999998777666555332 4678888888654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-+.+|++|.+.
T Consensus 67 ~~v~~~~~~~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 67 EDVRNLVDTTIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCcceecccc
Confidence 310 000135789999753
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.80 E-value=0.75 Score=39.11 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=60.8
Q ss_pred HHhCCCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 289 ILENPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.......++.+||-.|+. .|.+++.+|++ |+ +|+++.-++.-.+.+++. |. -.++
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~l----Ga----------------d~vi 81 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSL----GA----------------SRVL 81 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TE----------------EEEE
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhh----cc----------------cccc
Confidence 3444444455678876643 35577788887 88 899999998877666544 31 2333
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.-+-.+.. ..+....+|.|+-.. + ...+....+.|+++|+++
T Consensus 82 ~~~~~~~~--~~l~~~~~~~vvD~V-g---------g~~~~~~l~~l~~~Griv 123 (177)
T d1o89a2 82 PRDEFAES--RPLEKQVWAGAIDTV-G---------DKVLAKVLAQMNYGGCVA 123 (177)
T ss_dssp EGGGSSSC--CSSCCCCEEEEEESS-C---------HHHHHHHHHTEEEEEEEE
T ss_pred ccccHHHH--HHHHhhcCCeeEEEc-c---------hHHHHHHHHHhccccceE
Confidence 33322221 134456789887321 1 235667778999999998
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.4 Score=43.41 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.++..| .++.++++|+.+.
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g---------------~~~~~~~~Dvs~~ 72 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG---------------GQAFACRCDITSE 72 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC---------------CcEEEEEccCCCH
Confidence 579999999988886 4566777798 89999999988887777777665 3688889998764
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-+.+|++|.+.
T Consensus 73 ~~~~~~~~~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 73 QELSALADFAISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEeeeCC
Confidence 310 000125799998763
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.49 E-value=0.45 Score=42.88 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..++++|-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.++..+ .++.++.+|+.+.
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g---------------~~~~~~~~Dvt~~ 71 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG---------------YESSGYAGDVSKK 71 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEccCCCH
Confidence 568999999988875 3555666688 89999999988887777776655 3688889988764
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-+.+|++|.+.
T Consensus 72 ~~v~~~~~~~~~~~g~iDilvnna 95 (251)
T d2c07a1 72 EEISEVINKILTEHKNVDILVNNA 95 (251)
T ss_dssp HHHHHHHHHHHHHCSCCCEEEECC
T ss_pred HHHHHHHHHHHHhcCCceeeeecc
Confidence 310 001236799998764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=89.22 E-value=0.42 Score=46.35 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=43.2
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-C--CCEEEEEeCCHHHHHHHHHHHHhCCC
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-G--ASRVIAVEASEKMAAVATQIAKDNDF 345 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G--~~~V~gvD~S~~~i~~A~~~~~~~gl 345 (497)
+.++.+++|||+-.|..+..+++. + ..+|+++|+++...+..+++++.+.+
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 567889999999999988876654 2 35999999999999999999988765
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.22 E-value=0.48 Score=42.95 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.++.++.-++.+.+.+...+ .++.++.+|+.+.
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~---------------~~~~~~~~Dv~~~ 69 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG---------------FQVTGSVCDASLR 69 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CceEEEeccCCCH
Confidence 479999999999987 5777888899 89999999988877777776654 3688888888654
Q ss_pred ccc------c-CCCCCceeEEEecc
Q 010913 373 GES------M-QIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l-~~~~~~fDvIvs~~ 390 (497)
... + ..-.+.+|++|.+.
T Consensus 70 ~~v~~~~~~~~~~~~g~idilvnnA 94 (259)
T d1xq1a_ 70 PEREKLMQTVSSMFGGKLDILINNL 94 (259)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcccccccc
Confidence 310 0 00135799999763
|
| >d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ADR1 species: Synthetic, based on Saccharomyces cerevisiae sequence
Probab=89.16 E-value=0.074 Score=31.28 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=25.4
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcc
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFD 73 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd 73 (497)
|..|.+|.+.|+--+-+|.|..+-|+=+
T Consensus 1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~ 28 (31)
T d2adra2 1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN 28 (31)
T ss_dssp SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred CcccccccchhhHHHHHHHHHHHHhcCc
Confidence 5789999999999999999999999743
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.90 E-value=0.47 Score=43.17 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=68.3
Q ss_pred CCEE-EEEcCCCCH---hHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 298 GAVV-MDIGCGTGI---LSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 298 ~~~V-LDvGCGtG~---ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
|++| |--|++.|+ ++..+++. |+ +|+.++.++.-++.+.+.++..+ .++.++.+|+.+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~Dvs~~ 65 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG---------------LSPRFHQLDIDDL 65 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT---------------CCCEEEECCTTCH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEEecCCH
Confidence 5566 667877776 34556666 55 99999999998888888777665 3678899998765
Q ss_pred ccc------cCCCCCceeEEEecccccccc---C---hhhH-----------HHHHHHHhccccCCcEEe
Q 010913 373 GES------MQIQPHSVDVLVSEWMGYCLL---Y---ESML-----------SSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~~~~~l~---~---~~~l-----------~~vL~~~~r~LkpgG~li 419 (497)
..- +.-.-+.+|++|.+. +.... . .... -.+.+.+...|+++|.++
T Consensus 66 ~sv~~~~~~~~~~~g~iDiLVnNA-Gi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~iv 134 (275)
T d1wmaa1 66 QSIRALRDFLRKEYGGLDVLVNNA-GIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVV 134 (275)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECC-CCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcC-CcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 420 101135799999874 22111 0 0111 134555677888899887
|
| >d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.075 Score=30.54 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.6
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcC
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
|..|-||..-......+-.|+++.|+
T Consensus 2 PFkC~~CsFDtkq~SnL~kH~kk~H~ 27 (29)
T d1x5wa2 2 PFKCNYCSFDTKQPSNLSKHMKKFHG 27 (29)
T ss_dssp SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred CcccceecccccCcchHHHHHHHHcc
Confidence 68999999888889999999999997
|
| >d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZFY species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.65 E-value=0.13 Score=29.50 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=24.5
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCc
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCF 72 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~F 72 (497)
|-.|.+|+..+.+..-+-.|.+++|+-
T Consensus 2 py~cqyc~yrsadssnlkthiktkhsk 28 (30)
T d1klra_ 2 TYQCQYCEFRSADSSNLKTHIKTKHSK 28 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred Cccccccccccccchhhhhhhhccccc
Confidence 568999999999999999999999974
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.52 E-value=0.64 Score=41.88 Aligned_cols=77 Identities=19% Similarity=0.193 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 298 GAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 298 ~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
|+++|--|++.|+ ++..+++.|+ +|+.++.++..++.+.+.++..+ .++.++.+|+.+...
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g---------------~~~~~~~~Dvs~~~~ 65 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG---------------VEADGRTCDVRSVPE 65 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTCHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEeecCCHHH
Confidence 6788999998886 5667788898 89999999988887777777665 378889999866531
Q ss_pred c------cCCCCCceeEEEecc
Q 010913 375 S------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 375 ~------l~~~~~~fDvIvs~~ 390 (497)
- +.-.-++.|++|.+.
T Consensus 66 v~~~~~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 66 IEALVAAVVERYGPVDVLVNNA 87 (257)
T ss_dssp HHHHHHHHHHHTCSCSEEEECC
T ss_pred HHHHHHHHHHHhCCCCEEEecc
Confidence 0 001136799999763
|
| >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcriptional repressor CTCF species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.1 Score=32.53 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=26.9
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcc
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFD 73 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd 73 (497)
+-|..|-+|++.|.....+-.||+..|+=|
T Consensus 6 ekP~~C~~C~k~F~~~~~L~~H~~~~H~~~ 35 (36)
T d2ct1a2 6 EKPYECYICHARFTQSGTMKMHILQKHTEN 35 (36)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred CCCEeCCCCcccccchHHHHHHcccccCCC
Confidence 358999999999999999999999999744
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.57 E-value=1.1 Score=41.30 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCCCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 293 PSLMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
+...+|+++|-.|++.|+ ++..+++.|+ +|+.++.++.-++.+.+.+..... .....++.++.+|+
T Consensus 7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~----------~~~~~~~~~~~~Dv 75 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLP----------PTKQARVIPIQCNI 75 (297)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSC----------TTCCCCEEEEECCT
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhc----------cccCceEEEEeccC
Confidence 345789999999999887 4567777898 899999998877666555543211 01124788899988
Q ss_pred hhcccc------cCCCCCceeEEEecc
Q 010913 370 EELGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 370 ~~l~~~------l~~~~~~fDvIvs~~ 390 (497)
.+.... ..-.-+..|++|.+.
T Consensus 76 s~~~~v~~~~~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 76 RNEEEVNNLVKSTLDTFGKINFLVNNG 102 (297)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 765310 000125789999764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.20 E-value=0.84 Score=41.70 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHH-HhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIA-KDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~-~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
.++|+++|-.|++.|+ ++..+++.|+ +|+.+|.+..-++.+.+.+ ...+ .++.++.+|+.
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g---------------~~~~~~~~D~~ 85 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG---------------NKVHAIQCDVR 85 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS---------------SCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC---------------CceEEEEeccc
Confidence 3578999999998885 5666777798 9999999987766555443 3333 46788888886
Q ss_pred hcccc------cCCCCCceeEEEecc
Q 010913 371 ELGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 371 ~l~~~------l~~~~~~fDvIvs~~ 390 (497)
+.... .....+.+|+++.+.
T Consensus 86 ~~~~v~~~~~~~~~~~g~iDilvnnA 111 (294)
T d1w6ua_ 86 DPDMVQNTVSELIKVAGHPNIVINNA 111 (294)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred ChHHHHHHhhhhhhhccccchhhhhh
Confidence 54310 011246789998753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.19 E-value=0.69 Score=41.56 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.+....- ..++.++.+|+.+..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~-------------~~~~~~~~~Dv~~~~ 67 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFE-------------PQKTLFIQCDVADQQ 67 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSC-------------GGGEEEEECCTTSHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcC-------------CCcEEEEEeecCCHH
Confidence 58999999999886 4667777898 899999999877766665543211 247888999987653
Q ss_pred cc------cCCCCCceeEEEecc
Q 010913 374 ES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 374 ~~------l~~~~~~fDvIvs~~ 390 (497)
.- +.-.-+++|++|.+.
T Consensus 68 ~v~~~~~~~~~~~G~iDilVnnA 90 (254)
T d2gdza1 68 QLRDTFRKVVDHFGRLDILVNNA 90 (254)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHcCCcCeecccc
Confidence 10 000125789999764
|
| >d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: GLI-Krueppel family member HKR3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.18 E-value=0.19 Score=27.53 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=19.1
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 010913 103 RCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.|..|...|-.+..++.||..
T Consensus 4 kcsscsqqfmqkkdlqshmik 24 (26)
T d2dlqa1 4 KCSSCSQQFMQKKDLQSHMIK 24 (26)
T ss_dssp ECSSSCCEESSHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999975
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=87.01 E-value=1.2 Score=37.99 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=39.9
Q ss_pred hCCCCCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh
Q 010913 291 ENPSLMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~ 342 (497)
......+|++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+..
T Consensus 16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~ 69 (191)
T d1luaa1 16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNK 69 (191)
T ss_dssp HTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHH
T ss_pred HcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHh
Confidence 33445789999999988876 5667778898 899999998887766666544
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=86.91 E-value=0.59 Score=42.02 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+.. ..++.++.+|+.+.
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~----------------~~~~~~~~~Dv~~~ 66 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT----------------PDQIQFFQHDSSDE 66 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC----------------TTTEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC----------------CCcEEEEEccCCCH
Confidence 578999999998886 4667788899 899999999877766665532 24788899998764
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-+++|++|.+.
T Consensus 67 ~~v~~~~~~~~~~~G~iDiLVnnA 90 (251)
T d1zk4a1 67 DGWTKLFDATEKAFGPVSTLVNNA 90 (251)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCceEEEecc
Confidence 310 000125789998764
|
| >d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 297b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.79 E-value=0.17 Score=34.23 Aligned_cols=49 Identities=18% Similarity=0.399 Sum_probs=39.2
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHH
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
|..| =|++.|.....+..|++ .|.= ...-.|..||..|.....|..||.
T Consensus 3 ~y~C-~Cgk~F~~~~~l~~H~~-~Ht~--------------------------ekpy~C~~C~k~F~~~~~L~~H~r 51 (53)
T d2csha1 3 LYPC-QCGKSFTHKSQRDRHMS-MHLG--------------------------LRPYGCGVCGKKFKMKHHLVGHMK 51 (53)
T ss_dssp CEEC-TTSCEESSHHHHHHHHH-HHSC--------------------------CCSEECTTTSCEESSSHHHHHHHT
T ss_pred CCCC-CCCCeECCHHHhHHHhh-cccc--------------------------ccCCcCCCcCCEecCHHHHHHHHh
Confidence 6789 49999999999999987 4431 011249999999999999999985
|
| >d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Enhancer binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.78 E-value=0.18 Score=28.86 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=22.7
Q ss_pred cccccCCccCCHHHHHHHHHHhccCc
Q 010913 103 RCWICGLTCQSNQDLQNHLHEAYNLK 128 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~~~~~~ 128 (497)
.|-+|+-.|.++-.|-.||+.|.|.+
T Consensus 3 ~C~~CnF~FKTKGNLTKHmkSKaH~k 28 (29)
T d1bboa2 3 HCTYCNFSFKTKGNLTKHMKSKAHSK 28 (29)
T ss_dssp ECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred ccceeeeeEeeccchhHhhhhhhhcc
Confidence 48899999999999999999887654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.73 E-value=1.9 Score=35.77 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=58.9
Q ss_pred CEEEEEcCCCCH--hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 299 AVVMDIGCGTGI--LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 299 ~~VLDvGCGtG~--ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++|--||+|... ++..|+++|. .|+.+|.++.-++..++.-... . +............+..+..+.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~e~---- 69 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAII-A------EGPGLAGTAHPDLLTSDIGLA---- 69 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEE-E------ESSSCCEEECCSEEESCHHHH----
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCc-h------hhhhhhhhhhhhhhhhhhHhH----
Confidence 578889999744 4666777788 9999999987776554431000 0 000000000011112222221
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
-..+|+|+... .......++.++..+|+++..++.
T Consensus 70 ---~~~aD~iii~v------~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 70 ---VKDADVILIVV------PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ---HTTCSEEEECS------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ---hcCCCEEEEEE------chhHHHHHHHHhhhccCCCCEEEE
Confidence 13589988432 334567899999999999987763
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.00 E-value=0.59 Score=42.38 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=54.7
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
+.+|+++|-.|++.|+ ++..+++.|+ +|+.++.++.-++.+.+......- ..+.++..+..+
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~--------------~~~~~~~~d~~~ 75 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGA--------------ASAHYIAGTMED 75 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC--------------SEEEEEECCTTC
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhc--------------ccchhhhhhhhh
Confidence 3678999999999997 5777888898 999999999888776655433221 366777777654
Q ss_pred cccc------cCCCCCceeEEEecc
Q 010913 372 LGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~------l~~~~~~fDvIvs~~ 390 (497)
.... ..-..+..|+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~li~na 100 (269)
T d1xu9a_ 76 MTFAEQFVAQAGKLMGGLDMLILNH 100 (269)
T ss_dssp HHHHHHHHHHHHHHHTSCSEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcccccccc
Confidence 3210 001134578777653
|
| >d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcriptional repressor CTCF species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.97 E-value=0.16 Score=31.61 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcc
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFD 73 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd 73 (497)
-|..|-.|++.|.....+..||+..|+=+
T Consensus 7 kPy~C~~C~k~F~~~~~L~~H~r~H~~~~ 35 (36)
T d1x6ha2 7 KPYACSHCDKTFRQKQLLDMHFKRYHDPN 35 (36)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred CCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence 58999999999999999999999887644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.78 E-value=0.83 Score=41.03 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHH-HhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIA-KDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~-~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.+ +..| .++.++.+|+.+
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g---------------~~~~~~~~Dv~~ 66 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG---------------VETMAFRCDVSN 66 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC---------------CCEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC---------------CcEEEEEccCCC
Confidence 478999999999886 5677888899 8999999987766554443 3333 367888898865
Q ss_pred cccc------cCCCCCceeEEEecc
Q 010913 372 LGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~------l~~~~~~fDvIvs~~ 390 (497)
...- +.-.-+++|++|.+.
T Consensus 67 ~~~v~~~~~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 67 YEEVKKLLEAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4310 000125799999764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.36 E-value=1.2 Score=39.96 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=55.2
Q ss_pred CEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 299 AVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 299 ~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.+...| .++.++.+|+.+...-
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g---------------~~~~~~~~Dv~~~~~v 65 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG---------------GHAVAVKVDVSDRDQV 65 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---------------CCEEEEECCTTSHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEeeCCCHHHH
Confidence 456888988886 4667777898 89999999988887777776665 3788889998765310
Q ss_pred ------cCCCCCceeEEEecc
Q 010913 376 ------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 376 ------l~~~~~~fDvIvs~~ 390 (497)
+.-.-+++|++|.+.
T Consensus 66 ~~~~~~~~~~~g~iDilVnnA 86 (255)
T d1gega_ 66 FAAVEQARKTLGGFDVIVNNA 86 (255)
T ss_dssp HHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHHHhCCccEEEecc
Confidence 001136799999763
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.10 E-value=1.1 Score=40.53 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCC-HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEAS-EKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S-~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+|++||-.|++.|+ ++..+++.|+ +|+.++.+ +..++.+.+.++..+ .++.++.+|+.+
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g---------------~~~~~~~~D~~~ 79 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG---------------SDAACVKANVGV 79 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT---------------CCEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhC---------------CceeeEeCCCCC
Confidence 578999999999986 5777888899 89999887 455565666666665 368888888866
Q ss_pred ccc------ccCCCCCceeEEEecc
Q 010913 372 LGE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~------~l~~~~~~fDvIvs~~ 390 (497)
... .+.-..+..|++|.+.
T Consensus 80 ~~~v~~~~~~~~~~~g~idilV~na 104 (272)
T d1g0oa_ 80 VEDIVRMFEEAVKIFGKLDIVCSNS 104 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCcccccc
Confidence 431 0001135689988764
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=0.91 Score=40.76 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++...+. . .++.++.+|+.+.
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~---~----------------~~~~~~~~Dvs~~ 63 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQE---L----------------PGAVFILCDVTQE 63 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C----------------TTEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---c----------------CCCeEEEccCCCH
Confidence 579999999999886 5677778898 899999998766544332 2 3577888888654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- ..-.-++.|++|.+.
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnA 87 (250)
T d1ydea1 64 DDVKTLVSETIRRFGRLDCVVNNA 87 (250)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHhcCCCCEEEecc
Confidence 310 001125789999764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.85 E-value=0.3 Score=44.08 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=41.5
Q ss_pred eEEEecchhhcccccCCCCCceeEEEecccccc--------ccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYC--------LLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~--------l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
-.++.||..++-. .++++++|+|+..+.-.. ..+...+..++.++.|+|||||.++.
T Consensus 5 ~~~~~~D~le~l~--~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~ 69 (279)
T d1eg2a_ 5 HVYDVCDCLDTLA--KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAI 69 (279)
T ss_dssp EEEEECCHHHHHH--TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEechHHHHHh--hCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 3577888777543 367899999999874211 12234567888999999999999884
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.46 E-value=1 Score=40.21 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.+ + +++.++.+|+.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~---------------~~~~~~~~Dv~~ 63 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAEL---A---------------DAARYVHLDVTQ 63 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---G---------------GGEEEEECCTTC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---h---------------CcceEEEeecCC
Confidence 4678999999999886 5667888899 8999999987665444332 2 467888888866
Q ss_pred ccc------ccCCCCCceeEEEecc
Q 010913 372 LGE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~------~l~~~~~~fDvIvs~~ 390 (497)
... .+.-.-+.+|++|.+.
T Consensus 64 ~~~v~~~~~~~~~~~g~idilinnA 88 (244)
T d1nffa_ 64 PAQWKAAVDTAVTAFGGLHVLVNNA 88 (244)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEECC
Confidence 431 0001125689998763
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=83.94 E-value=0.75 Score=36.61 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=52.7
Q ss_pred CCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCce
Q 010913 306 CGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSV 383 (497)
Q Consensus 306 CGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~f 383 (497)
||.|..+..+++. |. .|+.+|.++..++.++ .. .+.++.||..+...-....-.+.
T Consensus 6 ~G~g~~g~~l~~~L~~~-~i~vi~~d~~~~~~~~----~~-----------------~~~~i~Gd~~~~~~L~~a~i~~A 63 (129)
T d2fy8a1 6 CGWSESTLECLRELRGS-EVFVLAEDENVRKKVL----RS-----------------GANFVHGDPTRVSDLEKANVRGA 63 (129)
T ss_dssp ESCCHHHHHHHHTSCGG-GEEEEESCTTHHHHHH----HT-----------------TCEEEESCTTSHHHHHHTTCTTC
T ss_pred ECCCHHHHHHHHHHcCC-CCEEEEcchHHHHHHH----hc-----------------CccccccccCCHHHHHHhhhhcC
Confidence 5667788888876 44 7889999998765443 22 46888899765431112334567
Q ss_pred eEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 384 DVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 384 DvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.+++.. .......++-...|-+.|...++
T Consensus 64 ~~vi~~~------~~d~~n~~~~~~~r~~~~~~~ii 93 (129)
T d2fy8a1 64 RAVIVNL------ESDSETIHCILGIRKIDESVRII 93 (129)
T ss_dssp SEEEECC------SSHHHHHHHHHHHHHHCSSSCEE
T ss_pred cEEEEec------cchhhhHHHHHHHHHHCCCceEE
Confidence 8887432 22223333444556788887665
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.87 E-value=1.1 Score=40.07 Aligned_cols=75 Identities=24% Similarity=0.226 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|++||-.|++.|+ ++..+++.|+ +|+.+|.++.-++.+.+. . ..+..++.|+.+.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~---~----------------~~~~~~~~Dv~d~ 64 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRE---C----------------PGIEPVCVDLGDW 64 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---S----------------TTCEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHh---c----------------CCCeEEEEeCCCH
Confidence 589999999999886 5677777898 899999998766544332 2 2466777777554
Q ss_pred ccc--cCCCCCceeEEEecc
Q 010913 373 GES--MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~--l~~~~~~fDvIvs~~ 390 (497)
..- +--.-+++|++|.+.
T Consensus 65 ~~v~~~~~~~g~iDilVnnA 84 (244)
T d1pr9a_ 65 EATERALGSVGPVDLLVNNA 84 (244)
T ss_dssp HHHHHHHTTCCCCCEEEECC
T ss_pred HHHHHHHHHhCCceEEEecc
Confidence 210 001236799999764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.49 E-value=1.2 Score=40.04 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.+ + .++.++.+|+.+.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~---------------~~~~~~~~Dvt~~ 63 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G---------------PAACAIALDVTDQ 63 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C---------------TTEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C---------------CceEEEEeeCCCH
Confidence 478999999999886 5677778898 8999999987665444433 2 4678888888665
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- ..-.-+..|++|.+.
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnA 87 (256)
T d1k2wa_ 64 ASIDRCVAELLDRWGSIDILVNNA 87 (256)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCccEEEeec
Confidence 310 000125789999764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=83.33 E-value=0.85 Score=41.06 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCC-HHHHHHHHHHH-HhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEAS-EKMAAVATQIA-KDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S-~~~i~~A~~~~-~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.++.+ +..++.+.+.+ ...+ .++.++.+|+.
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g---------------~~~~~~~~Dv~ 65 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHG---------------VKVLYDGADLS 65 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHT---------------SCEEEECCCTT
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcC---------------CcEEEEECCCC
Confidence 578999999999887 5667888899 89999987 45555554443 3333 37888999987
Q ss_pred hcccc------cCCCCCceeEEEecc
Q 010913 371 ELGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 371 ~l~~~------l~~~~~~fDvIvs~~ 390 (497)
+...- +.-.-++.|++|.+.
T Consensus 66 ~~~~v~~~~~~~~~~~G~iDiLVnnA 91 (260)
T d1x1ta1 66 KGEAVRGLVDNAVRQMGRIDILVNNA 91 (260)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEeec
Confidence 65310 000125799999763
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=83.17 E-value=1.1 Score=40.17 Aligned_cols=74 Identities=28% Similarity=0.250 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++|+++|-.|++.|+ ++..+++.|+ +|+.+|.++...+.+++. ...+++.|+.+
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~---------------------~~~~~~~Dv~~ 59 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI---------------------GGAFFQVDLED 59 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH---------------------TCEEEECCTTC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc---------------------CCeEEEEeCCC
Confidence 4689999999988886 4667778898 899999998765544432 23567777765
Q ss_pred ccc------ccCCCCCceeEEEecc
Q 010913 372 LGE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~------~l~~~~~~fDvIvs~~ 390 (497)
... .+.-.-++.|++|.+.
T Consensus 60 ~~~v~~~~~~~~~~~G~iDiLVnnA 84 (248)
T d2d1ya1 60 ERERVRFVEEAAYALGRVDVLVNNA 84 (248)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 431 0001125789998763
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=83.10 E-value=1.3 Score=39.88 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCH-HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASE-KMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~-~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.++.+. ..++.+.+.++..+ .++.++.+|+.+
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g---------------~~~~~~~~Dvt~ 68 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG---------------GEAIAVKGDVTV 68 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT---------------CEEEEEECCTTS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcC---------------CcEEEEEccCCC
Confidence 478999999999986 4667778898 899999874 45555555565554 378888999866
Q ss_pred cccc------cCCCCCceeEEEecc
Q 010913 372 LGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~------l~~~~~~fDvIvs~~ 390 (497)
...- +.-.-+++|++|.+.
T Consensus 69 ~~~v~~~~~~~~~~~G~iDiLVnnA 93 (261)
T d1geea_ 69 ESDVINLVQSAIKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCEeeccc
Confidence 4310 000125789999764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.77 E-value=1.2 Score=39.53 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
++|+++|-.|++.|+ ++..+++.|+ +|+.++.++.-++.+.+. . ..+..+..|+.+.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~---~----------------~~~~~~~~Dv~~~ 62 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKE---C----------------PGIEPVCVDLGDW 62 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---S----------------TTCEEEECCTTCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---c----------------CCCeEEEEeCCCH
Confidence 578999999999886 5667778898 899999998665443332 2 2466777777654
Q ss_pred ccc--cCCCCCceeEEEecc
Q 010913 373 GES--MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~--l~~~~~~fDvIvs~~ 390 (497)
..- .--.-++.|++|.+.
T Consensus 63 ~~v~~~~~~~g~iDilVnnA 82 (242)
T d1cyda_ 63 DATEKALGGIGPVDLLVNNA 82 (242)
T ss_dssp HHHHHHHTTCCCCSEEEECC
T ss_pred HHHHHHHHHcCCCeEEEECC
Confidence 310 001236799999763
|
| >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ADR1 species: Synthetic, based on Saccharomyces cerevisiae sequence
Probab=82.66 E-value=0.4 Score=28.19 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=19.0
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 010913 103 RCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.|..||+.|.....|..||.-
T Consensus 4 ~C~~C~k~F~~~~~L~~H~r~ 24 (29)
T d2adra1 4 VCEVCTRAFARQEHLKRHYRS 24 (29)
T ss_dssp CCTTTCCCBSCHHHHHHHHHT
T ss_pred CCCCCCCCCCCchHcccccCc
Confidence 599999999999999999974
|
| >d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.48 E-value=0.26 Score=31.26 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=24.7
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcC
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
-|..|-.|++.|+....+..||+..|.
T Consensus 4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht 30 (39)
T d2epsa1 4 KPYICQSCGKGFSRPDHLNGHIKQVHT 30 (39)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred CCccCCCCCCCcCChHHhhccCcCccC
Confidence 478999999999999999999998775
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.32 E-value=0.62 Score=42.03 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=54.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQ-IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~-~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
++|++||-.|++.|+ ++..+++.|+ +|+.++.++.-+..+.+ ..+..| .++.++.+|+.+
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g---------------~~~~~~~~Dv~~ 70 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG---------------VKTKAYQCDVSN 70 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT---------------CCEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC---------------CceEEEEccCCC
Confidence 578999999988886 5677788899 89999998765544433 334333 368888998866
Q ss_pred cccc------cCCCCCceeEEEecc
Q 010913 372 LGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~------l~~~~~~fDvIvs~~ 390 (497)
...- +.-.-+..|++|.+.
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 71 TDIVTKTIQQIDADLGPISGLIANA 95 (260)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCcEecccc
Confidence 5310 001236799998764
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=82.11 E-value=1.4 Score=39.09 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+|+++|-.|++.|+ ++..+++.|+ +|+.++.+...++ +..+..+ .++.++++|+.+
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~---~~~~~~~---------------~~~~~~~~Dls~ 62 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLA---EAVAALE---------------AEAIAVVADVSD 62 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH---HHHHTCC---------------SSEEEEECCTTS
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH---HHHHHcC---------------CceEEEEecCCC
Confidence 3679999999999886 4666777798 9999999987554 3333332 467888898865
Q ss_pred cccc------cCCCCCceeEEEecc
Q 010913 372 LGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~------l~~~~~~fDvIvs~~ 390 (497)
.... +.-.-+++|++|.+.
T Consensus 63 ~~~i~~~~~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 63 PKAVEAVFAEALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred HHHHHHHHHHHHHHhCCccEecccc
Confidence 4310 000125789998763
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=81.99 E-value=1.4 Score=39.28 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.++.++..++...+.+. .++..+.+|+.+.
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~------------------~~~~~~~~Dv~~~ 62 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG------------------ANGKGLMLNVTDP 62 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG------------------GGEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC------------------CCCcEEEEEecCH
Confidence 478999999999886 5667777898 99999999887765554442 3567778887654
Q ss_pred cc------ccCCCCCceeEEEecc
Q 010913 373 GE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~------~l~~~~~~fDvIvs~~ 390 (497)
.. .+.-.-++.|++|.+.
T Consensus 63 ~~v~~~~~~~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 63 ASIESVLEKIRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECC
T ss_pred HHhhhhhhhhhcccCCcceehhhh
Confidence 31 0001235799999763
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=81.94 E-value=1.2 Score=40.07 Aligned_cols=76 Identities=24% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++.-++.. .+..+ .++.++++|+.+.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~---~~~~~---------------~~~~~~~~Dv~~~ 63 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAAT---ARELG---------------DAARYQHLDVTIE 63 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH---HHTTG---------------GGEEEEECCTTCH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH---HHHhC---------------CceEEEEcccCCH
Confidence 578999999999986 4777888899 899999998655433 33322 4788899998654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-+++|++|.+.
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnA 87 (254)
T d1hdca_ 64 EDWQRVVAYAREEFGSVDGLVNNA 87 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCccEEEecC
Confidence 310 000125789988763
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.54 E-value=1.4 Score=39.35 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+.+ + .+..++.+|+.+.
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~Dv~~~ 64 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G---------------ERSMFVRHDVSSE 64 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C---------------TTEEEECCCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C---------------CCeEEEEeecCCH
Confidence 578999999988886 5667777898 8999999987766554443 2 3567788887654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+..|++|.+.
T Consensus 65 ~~~~~~~~~~~~~~g~iDilVnnA 88 (253)
T d1hxha_ 65 ADWTLVMAAVQRRLGTLNVLVNNA 88 (253)
T ss_dssp HHHHHHHHHHHHHHCSCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCeEEecc
Confidence 310 001135789999864
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=81.45 E-value=1.7 Score=38.81 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEE-EeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIA-VEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~g-vD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..|++||-.|++.|+ ++..+++.|+ +|+. ...++..++.+.+.+...| .++.++.+|+.+
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g---------------~~~~~~~~D~~~ 67 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLG---------------AQGVAIQADISK 67 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT---------------CCEEEEECCTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcC---------------CCceEecCCCCC
Confidence 579999999988774 5667778899 6665 5677777777777777766 378889999865
Q ss_pred ccc------ccCCCCCceeEEEecc
Q 010913 372 LGE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~------~l~~~~~~fDvIvs~~ 390 (497)
... .+....+..|++|.+.
T Consensus 68 ~~~v~~~~~~~~~~~g~idilinna 92 (259)
T d1ja9a_ 68 PSEVVALFDKAVSHFGGLDFVMSNS 92 (259)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEecc
Confidence 431 0111235699999764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=81.44 E-value=0.64 Score=37.10 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=37.8
Q ss_pred EEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 300 VVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 300 ~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+++-+|+|. |. ++..|.+.|. .|+.+|.++..++.++ .. ...++.||..+...-..
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~----~~-----------------~~~~~~gd~~~~~~l~~ 59 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYA----SY-----------------ATHAVIANATEENELLS 59 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTT----TT-----------------CSEEEECCTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHH----Hh-----------------CCcceeeecccchhhhc
Confidence 355566653 22 2334444577 8999999998776543 22 23566788755431111
Q ss_pred CCCCceeEEEe
Q 010913 378 IQPHSVDVLVS 388 (497)
Q Consensus 378 ~~~~~fDvIvs 388 (497)
..-...|++++
T Consensus 60 a~i~~a~~vi~ 70 (134)
T d2hmva1 60 LGIRNFEYVIV 70 (134)
T ss_dssp HTGGGCSEEEE
T ss_pred cCCccccEEEE
Confidence 12346787764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=81.40 E-value=1.3 Score=39.45 Aligned_cols=74 Identities=22% Similarity=0.164 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++..++.+.+. . ++.++.+|+.+.
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~---~-----------------~~~~~~~Dv~~~ 61 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEA---V-----------------GAHPVVMDVADP 61 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT---T-----------------TCEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH---c-----------------CCeEEEEecCCH
Confidence 478999999999986 4667777898 899999998766544332 1 456778887654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-+.+|++|.+.
T Consensus 62 ~~v~~~~~~~~~~~g~iDilVnnA 85 (242)
T d1ulsa_ 62 ASVERGFAEALAHLGRLDGVVHYA 85 (242)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHHHHhcCCceEEEECC
Confidence 310 000124699998753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.37 E-value=0.56 Score=42.97 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=43.8
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEecccccccc------------ChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL------------YESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~------------~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.=.+++||..++-.. ++++++|+|+..+. |... +...+..++.++.++|+|+|.+++...
T Consensus 12 ~~~l~~GD~le~l~~--l~~~sVdli~tDPP-Y~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~ 83 (320)
T d1booa_ 12 NGSMYIGDSLELLES--FPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 83 (320)
T ss_dssp SEEEEESCHHHHGGG--SCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEehhHHHHHhh--CccCCCCEEEECCC-CcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence 348999998876543 56899999999863 2211 123456789999999999999985443
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=81.13 E-value=1.7 Score=39.30 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|++||-.|++.|+ ++..+++.|+ +|+.+|.++..++...+.. + .++..+.+|+.+.
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~---------------~~~~~~~~Dv~~~ 63 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---G---------------DNVLGIVGDVRSL 63 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G---------------GGEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C---------------CCeeEEecccccH
Confidence 478999999998886 5677778898 9999999987665444332 2 3688888887654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... ..-.-+.+|++|.+.
T Consensus 64 ~~~~~~~~~~~~~~g~idilvnnA 87 (276)
T d1bdba_ 64 EDQKQAASRCVARFGKIDTLIPNA 87 (276)
T ss_dssp HHHHHHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHHHHHHHhCCcccccccc
Confidence 310 001135689998753
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=80.85 E-value=1.6 Score=38.80 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.++. +.+...++..| .++.++.+|+.+.
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g---------------~~~~~~~~Dvs~~ 64 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLG---------------RRVLTVKCDVSQP 64 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT---------------CCEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcC---------------CcEEEEEeeCCCH
Confidence 578999999998886 5667778899 8999998764 23344444444 4788899998665
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-+++|++|.+.
T Consensus 65 ~~v~~~~~~~~~~~G~iDilVnnA 88 (247)
T d2ew8a1 65 GDVEAFGKQVISTFGRCDILVNNA 88 (247)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 310 000125799999763
|
| >d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.42 E-value=0.65 Score=25.61 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.2
Q ss_pred CcceecCCCCCCCHHHHHHHhhhh
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLS 69 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~ 69 (497)
|-.|-+|++-|+--+.+-.||+..
T Consensus 1 phkc~~c~kcfsrkdklk~hmr~h 24 (26)
T d2dmda2 1 PHKCEVCGKCFSRKDKLKTHMRCH 24 (26)
T ss_dssp CCCBTTTTBCCCCHHHHHHHGGGC
T ss_pred CCccchhhhHhcchhHHHHHhhcc
Confidence 457999999999999999999864
|
| >d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.09 E-value=0.47 Score=27.64 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=19.0
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 010913 103 RCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.|..|++.|.....|..||.-
T Consensus 5 ~C~~C~k~F~~~~~L~~H~r~ 25 (28)
T d1a1ia2 5 QCRICMRNFSRSDHLTTHIRT 25 (28)
T ss_dssp ECTTTCCEESCHHHHHHHHHH
T ss_pred cCCCCcCEecccccccccCCC
Confidence 599999999999999999974
|