Citrus Sinensis ID: 010914

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------

MGLPELSPLPLHRRRRLLRRQVLERLFSLQLAMHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP

cccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc

ccccccccccHHHHHHHHHHHHHHHccccHHccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccEEEcccccEEEEcccEccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEccccccccccccccccc

mglpelsplplhRRRRLLRRQVLERLFSLQLAmhgssihasnsvlgstrmdnsfvvlpkqrpqshgvpprprgssaqseasqsgkamdESFVVIYKsesasdgggphipppeggtngpmqpnnsgfhSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTnvlndafpiwhdgefgtinnfrlgrlpkipvewDEINAAWGQACLLLHTMCqyfrpkfpyrikiipmgsyprimdsnnntyelfgpvnlfwsTRYDKAMTLFLSCLKDFAEfanskdqennippdkcfklpykiendkvenySITQSFNKQENWTKALKYTLCNLKWALFWFVgntnfqpvsamsspaeVSAVGSLYAkrgadlksvgrnlskp

mglpelsplplhrRRRLLRRQVLERLFSlqlamhgssiHASNSVLGSTRMDNSFVVLPKQrpqshgvpprprgssAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSqtqveqplCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFanskdqennippdkcFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAkrgadlksvgrnlskp

MGlpelsplplhrrrrllrrqvlerlFSLQLAMHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRgssaqseasqsgKAMDESFVVIYKSESASDgggphipppeggTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLkeklkieeeerkleaaieeteKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP

****************LLRRQVLERLFSLQLAMHG********************************************************VVI********************************HSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL**********************************************FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFAN*********PDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQP**********************************

*************************************************************************************************************************************KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEAC***************************************************************ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFAN************CFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFV*****************************************

MGLPELSPLPLHRRRRLLRRQVLERLFSLQLAMHGSSIHASNSVLGSTRMDNSFVVLPK***************************MDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP

**LPELSPLPLHRRRRLLRRQVLERLFS******************************K******************************S*****K*****************************FHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT**************************************

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MGLPELSPLPLHRRRRLLRRQVLERLFSLQLAMHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		497	2.2.26 [Sep-21-2011]
Q9M367		517	Beclin-1-like protein OS=	yes	no	0.915	0.880	0.803	0.0
Q54JI9		855	Beclin-1-like protein B O	yes	no	0.625	0.363	0.389	6e-61
Q6GP52		445	Beclin-1 OS=Xenopus laevi	N/A	no	0.774	0.865	0.325	1e-59
Q4A1L3		445	Beclin-1 OS=Xenopus tropi	yes	no	0.774	0.865	0.325	4e-59
O88597		448	Beclin-1 OS=Mus musculus	yes	no	0.764	0.848	0.328	4e-57
Q5ZKS6		447	Beclin-1 OS=Gallus gallus	yes	no	0.766	0.852	0.327	5e-57
Q91XJ1		448	Beclin-1 OS=Rattus norveg	yes	no	0.764	0.848	0.328	6e-57
Q4A1L4		448	Beclin-1 OS=Bos taurus GN	yes	no	0.764	0.848	0.328	2e-56
Q14457		450	Beclin-1 OS=Homo sapiens	yes	no	0.768	0.848	0.324	2e-56
Q4A1L5		448	Beclin-1 OS=Sus scrofa GN	yes	no	0.760	0.843	0.328	3e-56

>sp\|Q9M367\|BECN1_ARATH Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2	Back alignment and function desciption

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/458 (80%), Positives = 402/458 (87%), Gaps = 3/458 (0%)

Query: 32  AMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRG-SSAQSEASQSGKAMDE 89
           A  GSSIH +NSVLGSTRMDNSFVVLP+ +P QS G+PPRPRG SS Q +A+QSGKAM+E
Sbjct: 51  ATQGSSIHGANSVLGSTRMDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEE 110

Query: 90  SFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQP 149
           SFVV+YKSE  SD GG H    E G NGP+  N SGF++TI VL RAF+IA +QTQVEQP
Sbjct: 111 SFVVVYKSEPVSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQP 170

Query: 150 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERK 209
           LCLECMRVLSDKL+KEV+DVTRD+EAYEAC+QRLEGE +DVLSEADFLKEK KIEEEERK
Sbjct: 171 LCLECMRVLSDKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERK 230

Query: 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 269
           L AAIEETEKQNAEVN +LKELE K  RF ELE+RYWQEFNNFQFQLIAHQEERDAI +K
Sbjct: 231 LVAAIEETEKQNAEVNHQLKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAK 290

Query: 270 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLL 329
           IEVSQAHLELL +TNVL DAFPI +DGEFGTINNFRLGRLP I VEWDEINAAWGQACLL
Sbjct: 291 IEVSQAHLELLNKTNVLIDAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLL 350

Query: 330 LHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCL 389
           LHTMC YFRPKF  ++KI PMGSYPRI+DSNN TYELFGPVNLFWSTRYDKAMTL+L CL
Sbjct: 351 LHTMCNYFRPKFQCQVKIQPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCL 410

Query: 390 KDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLK 449
           KDFA+FANSKDQENNIPPD C  LPYKIE DKV  YSITQSFNKQE+WTKALKYTLCNLK
Sbjct: 411 KDFADFANSKDQENNIPPDNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLK 470

Query: 450 WALFWFVGNTNFQPVSA-MSSPAEVSAVGSLYAKRGAD 486
           WAL+WFVGNTNFQP+SA +S P+ +SA GSLYAKRG D
Sbjct: 471 WALYWFVGNTNFQPLSATVSLPSNISAAGSLYAKRGPD 508

Arabidopsis thaliana (taxid: 3702)

>sp\|Q54JI9\|BECNB_DICDI Beclin-1-like protein B OS=Dictyostelium discoideum GN=atg6B PE=3 SV=1	Back alignment and function description

>sp\|Q6GP52\|BECN1_XENLA Beclin-1 OS=Xenopus laevis GN=becn1 PE=2 SV=1	Back alignment and function description

>sp\|Q4A1L3\|BECN1_XENTR Beclin-1 OS=Xenopus tropicalis GN=becn1 PE=2 SV=1	Back alignment and function description

>sp\|O88597\|BECN1_MOUSE Beclin-1 OS=Mus musculus GN=Becn1 PE=1 SV=3	Back alignment and function description

>sp\|Q5ZKS6\|BECN1_CHICK Beclin-1 OS=Gallus gallus GN=BECN1 PE=2 SV=1	Back alignment and function description

>sp\|Q91XJ1\|BECN1_RAT Beclin-1 OS=Rattus norvegicus GN=Becn1 PE=1 SV=1	Back alignment and function description

>sp\|Q4A1L4\|BECN1_BOVIN Beclin-1 OS=Bos taurus GN=BECN1 PE=2 SV=1	Back alignment and function description

>sp\|Q14457\|BECN1_HUMAN Beclin-1 OS=Homo sapiens GN=BECN1 PE=1 SV=2	Back alignment and function description

>sp\|Q4A1L5\|BECN1_PIG Beclin-1 OS=Sus scrofa GN=BECN1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		497
225454518		522	PREDICTED: beclin 1 protein [Vitis vinif	0.937	0.892	0.845	0.0
73587480		505	beclin 1 protein [Malus x domestica]	0.921	0.906	0.831	0.0
224067974		516	predicted protein [Populus trichocarpa]	0.927	0.893	0.837	0.0
255564727		523	Beclin-1, putative [Ricinus communis] gi	0.937	0.891	0.832	0.0
351724517		509	beclin 1 protein [Glycine max] gi\|735874	0.921	0.899	0.822	0.0
357456733		517	Beclin 1 protein [Medicago truncatula] g	0.919	0.883	0.836	0.0
357456731		567	Beclin 1 protein [Medicago truncatula] g	0.919	0.805	0.741	0.0
356508412		509	PREDICTED: beclin-1-like protein-like is	0.925	0.903	0.821	0.0
73587476		511	beclin 1 protein [Gossypium raimondii]	0.925	0.900	0.832	0.0
73587482		508	beclin 1 protein [Medicago truncatula]	0.917	0.897	0.829	0.0

>gi\|225454518\|ref\|XP_002277370.1\| PREDICTED: beclin 1 protein [Vitis vinifera] gi\|297745431\|emb\|CBI40511.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/473 (84%), Positives = 428/473 (90%), Gaps = 7/473 (1%)

Query: 32  AMHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESF 91
            M GS IH + SVLGST MD+SFVVLPKQR Q+ GVPPRPRG + Q + SQSGKAM+ESF
Sbjct: 50  GMQGSLIHGAGSVLGSTHMDHSFVVLPKQRNQAQGVPPRPRGGAVQPDVSQSGKAMEESF 109

Query: 92  VV-------IYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQT 144
           V+       +YK ESA++G G H+P PEGG +G +QPNNSGFH+TITVLKRAF+IAT+Q 
Sbjct: 110 VMLPPAPASVYKCESAAEGSGTHLPSPEGGPSGHLQPNNSGFHTTITVLKRAFDIATTQI 169

Query: 145 QVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIE 204
           QVEQPLCLECMRVLSDKLDKEV+DV RDI+AYEACLQRLEGEARDVLSEADFLKEKLKIE
Sbjct: 170 QVEQPLCLECMRVLSDKLDKEVEDVNRDIQAYEACLQRLEGEARDVLSEADFLKEKLKIE 229

Query: 205 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 264
           EEERKLEAAIEETEKQ A+VNAE+KELELKS RFKELEERYW EFNNFQFQL +HQEERD
Sbjct: 230 EEERKLEAAIEETEKQCAQVNAEMKELELKSSRFKELEERYWHEFNNFQFQLTSHQEERD 289

Query: 265 AISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWG 324
           AI +KIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWG
Sbjct: 290 AILAKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWG 349

Query: 325 QACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTL 384
           QACLLLHTM QYFRPKF YRIKIIPMGSYPRI DSNN+TYELFGPVNLFWSTRYDKAMTL
Sbjct: 350 QACLLLHTMVQYFRPKFQYRIKIIPMGSYPRITDSNNSTYELFGPVNLFWSTRYDKAMTL 409

Query: 385 FLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYT 444
           FL+CLKDFA+FANSKDQENNIPP+KCFKLPYKIENDKVENYSITQSFNKQENWTKALKYT
Sbjct: 410 FLTCLKDFADFANSKDQENNIPPEKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYT 469

Query: 445 LCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP 497
           LCNLKWAL+WFVGNTNFQP+SAM S  EVSAVGSLY KR AD KS  RN S P
Sbjct: 470 LCNLKWALYWFVGNTNFQPLSAMVSSPEVSAVGSLYTKRIADSKSEARNSSSP 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|73587480\|emb\|CAJ27522.1\| beclin 1 protein [Malus x domestica]	Back alignment and taxonomy information

>gi\|224067974\|ref\|XP_002302626.1\| predicted protein [Populus trichocarpa] gi\|222844352\|gb\|EEE81899.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255564727\|ref\|XP_002523358.1\| Beclin-1, putative [Ricinus communis] gi\|223537446\|gb\|EEF39074.1\| Beclin-1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|351724517\|ref\|NP_001238340.1\| beclin 1 protein [Glycine max] gi\|73587474\|emb\|CAJ27519.1\| beclin 1 protein [Glycine max]	Back alignment and taxonomy information

>gi\|357456733\|ref\|XP_003598647.1\| Beclin 1 protein [Medicago truncatula] gi\|355487695\|gb\|AES68898.1\| Beclin 1 protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357456731\|ref\|XP_003598646.1\| Beclin 1 protein [Medicago truncatula] gi\|355487694\|gb\|AES68897.1\| Beclin 1 protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356508412\|ref\|XP_003522951.1\| PREDICTED: beclin-1-like protein-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|73587476\|emb\|CAJ27520.1\| beclin 1 protein [Gossypium raimondii]	Back alignment and taxonomy information

>gi\|73587482\|emb\|CAJ27523.1\| beclin 1 protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		497
TAIR\|locus:2076715		517	ATG6 "AT3G61710" [Arabidopsis	0.915	0.880	0.733	1.6e-180
MGI\|MGI:1891828		448	Becn1 "beclin 1, autophagy rel	0.615	0.683	0.358	3.8e-53
UNIPROTKB\|Q14457		450	BECN1 "Beclin-1" [Homo sapiens	0.615	0.68	0.355	6.3e-53
UNIPROTKB\|Q4A1L4		448	BECN1 "Beclin-1" [Bos taurus (	0.615	0.683	0.355	8e-53
UNIPROTKB\|E2RNW7		463	AARSD1 "Uncharacterized protei	0.615	0.660	0.355	8e-53
UNIPROTKB\|Q4A1L5		448	BECN1 "Beclin-1" [Sus scrofa (	0.615	0.683	0.355	8e-53
UNIPROTKB\|Q5R878		450	BECN1 "Beclin-1" [Pongo abelii	0.615	0.68	0.355	8e-53
UNIPROTKB\|F1S1F6		448	BECN1 "Beclin-1" [Sus scrofa (	0.615	0.683	0.355	2.1e-52
UNIPROTKB\|Q6GP52		445	becn1 "Beclin-1" [Xenopus laev	0.615	0.687	0.355	2.7e-52
RGD\|620190		448	Becn1 "beclin 1, autophagy rel	0.615	0.683	0.355	2.7e-52

TAIR\|locus:2076715 ATG6 "AT3G61710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
 Identities = 336/458 (73%), Positives = 368/458 (80%)

Query:    32 AMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRXXXXXX-XXXXXXKAMDE 89
             A  GSSIH +NSVLGSTRMDNSFVVLP+ +P QS G+PPRPR             KAM+E
Sbjct:    51 ATQGSSIHGANSVLGSTRMDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEE 110

Query:    90 SFVVIYKSESASDXXXXXXXXXXXXTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQP 149
             SFVV+YKSE  SD             NGP+  N SGF++TI VL RAF+IA +QTQVEQP
Sbjct:   111 SFVVVYKSEPVSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQP 170

Query:   150 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLXXXXXXXXXXXX 209
             LCLECMRVLSDKL+KEV+DVTRD+EAYEAC+QRLEGE +DVLSEADFL            
Sbjct:   171 LCLECMRVLSDKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERK 230

Query:   210 XXXXXXXXXKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 269
                      KQNAEVN +LKELE K  RF ELE+RYWQEFNNFQFQLIAHQEERDAI +K
Sbjct:   231 LVAAIEETEKQNAEVNHQLKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAK 290

Query:   270 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLL 329
             IEVSQAHLELL +TNVL DAFPI +DGEFGTINNFRLGRLP I VEWDEINAAWGQACLL
Sbjct:   291 IEVSQAHLELLNKTNVLIDAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLL 350

Query:   330 LHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCL 389
             LHTMC YFRPKF  ++KI PMGSYPRI+DSNN TYELFGPVNLFWSTRYDKAMTL+L CL
Sbjct:   351 LHTMCNYFRPKFQCQVKIQPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCL 410

Query:   390 KDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLK 449
             KDFA+FANSKDQENNIPPD C  LPYKIE DKV  YSITQSFNKQE+WTKALKYTLCNLK
Sbjct:   411 KDFADFANSKDQENNIPPDNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLK 470

Query:   450 WALFWFVGNTNFQPVSA-MSSPAEVSAVGSLYAKRGAD 486
             WAL+WFVGNTNFQP+SA +S P+ +SA GSLYAKRG D
Sbjct:   471 WALYWFVGNTNFQPLSATVSLPSNISAAGSLYAKRGPD 508

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0000045 "autophagic vacuole assembly" evidence=IGI

GO:0000407 "pre-autophagosomal structure" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IGI

GO:0009846 "pollen germination" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

MGI\|MGI:1891828 Becn1 "beclin 1, autophagy related" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14457 BECN1 "Beclin-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4A1L4 BECN1 "Beclin-1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RNW7 AARSD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4A1L5 BECN1 "Beclin-1" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R878 BECN1 "Beclin-1" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1F6 BECN1 "Beclin-1" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6GP52 becn1 "Beclin-1" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

RGD\|620190 Becn1 "beclin 1, autophagy related" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M367	BECN1_ARATH	No assigned EC number	0.8034	0.9154	0.8800	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		497
pfam04111		356	pfam04111, APG6, Autophagy protein Apg6	6e-76
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	3e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	6e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.003
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
pfam12325		121	pfam12325, TMF_TATA_bd, TATA element modulatory fa	0.004
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004

>gnl\|CDD\|217902 pfam04111, APG6, Autophagy protein Apg6	Back alignment and domain information

 Score =  242 bits (619), Expect = 6e-76
 Identities = 119/356 (33%), Positives = 185/356 (51%), Gaps = 40/356 (11%)

Query: 130 ITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD 189
           +  +   F+I +SQT ++ PLC EC  +L ++LD E+ D  ++ + Y+  L +LE +  +
Sbjct: 2   VKAMTNLFDILSSQTNIDHPLCEECADILLERLDSELRDAEKERDTYKQYLSKLESQNVE 61

Query: 190 VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 249
           + +      E  ++++EE +L   +EE EK++ +++ EL EL+ + ++ +  E +Y +E+
Sbjct: 62  ISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREY 121

Query: 250 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 309
           N F    +  ++   ++  + E S   L+ L++TN+ N  F I H G F TIN  RLGRL
Sbjct: 122 NLFDRNNLQLEDNLQSLELQYEYSLNQLDKLRKTNIFNATFHISHSGPFATINGLRLGRL 181

Query: 310 PKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIM----DSNNNT-- 363
           P + V W EINAAWGQ  LLL  + +     F  R +++P GS+  I     +S      
Sbjct: 182 PSVVVPWKEINAAWGQTVLLLAALAKKLGLNFV-RYRLVPFGSHSYIEKLMVNSVEYNNS 240

Query: 364 --------------YELFGPVNL--FWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP 407
                          +L+    L  FW T++DKAM  FL CL  F         +     
Sbjct: 241 TTNAPGDWLILPVELDLYFSGGLKFFWDTKFDKAMVAFLDCLSQFTREVEKIATQ----- 295

Query: 408 DKCFKLPYKIENDK-----VEN----YSITQSFNKQENWTKALKYTLCNLKWALFW 454
              F LPY++E++K     VEN    YSI   FN  E WTKALK+ L NLKW L W
Sbjct: 296 ---FLLPYQMESEKGKINDVENSGGSYSIKYQFNSDEQWTKALKFMLTNLKWLLAW 348

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		497
KOG2751		447	consensus Beclin-like protein [Signal transduction	100.0
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	100.0
PF10186		302	Atg14: UV radiation resistance protein and autopha	99.43
KOG2751		447	consensus Beclin-like protein [Signal transduction	99.1
KOG2896		377	consensus UV radiation resistance associated prote	98.57
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	97.42
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	96.9
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.83
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	96.05
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.82
PRK03918		880	chromosome segregation protein; Provisional	95.75
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	95.67
PF11932		251	DUF3450: Protein of unknown function (DUF3450); In	95.63
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	95.6
KOG0979		1072	consensus Structural maintenance of chromosome pro	95.59
PHA02562		562	46 endonuclease subunit; Provisional	95.59
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.5
PRK11637		428	AmiB activator; Provisional	95.31
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.3
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.1
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	95.0
PRK11637		428	AmiB activator; Provisional	94.99
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	94.92
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	94.54
COG4942		420	Membrane-bound metallopeptidase [Cell division and	94.46
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	94.42
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	94.37
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	94.3
KOG0996		1293	consensus Structural maintenance of chromosome pro	94.25
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	94.22
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.18
TIGR02894		161	DNA_bind_RsfA transcription factor, RsfA family. I	94.09
PRK09039		343	hypothetical protein; Validated	94.09
PRK03918		880	chromosome segregation protein; Provisional	93.9
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.81
PRK02224		880	chromosome segregation protein; Provisional	93.74
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	93.7
PHA02562		562	46 endonuclease subunit; Provisional	93.7
PRK02224		880	chromosome segregation protein; Provisional	93.69
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	93.51
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	93.44
PRK10884		206	SH3 domain-containing protein; Provisional	93.41
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	93.4
KOG4360		596	consensus Uncharacterized coiled coil protein [Fun	93.36
PF10146		230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.27
COG2433		652	Uncharacterized conserved protein [Function unknow	93.25
PRK04863		1486	mukB cell division protein MukB; Provisional	93.19
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	92.98
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.85
COG4026		290	Uncharacterized protein containing TOPRIM domain,	92.83
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	92.8
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.7
PF10211		189	Ax_dynein_light: Axonemal dynein light chain; Inte	92.55
PF05266		190	DUF724: Protein of unknown function (DUF724); Inte	92.55
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	92.53
PRK04778		569	septation ring formation regulator EzrA; Provision	92.52
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.46
COG4372		499	Uncharacterized protein conserved in bacteria with	92.39
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	92.28
PF15035		182	Rootletin: Ciliary rootlet component, centrosome c	92.07
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	92.02
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	91.98
PRK04863		1486	mukB cell division protein MukB; Provisional	91.83
TIGR01000		457	bacteriocin_acc bacteriocin secretion accessory pr	91.78
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.68
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.67
KOG0964		1200	consensus Structural maintenance of chromosome pro	91.58
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.57
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.56
PRK10884		206	SH3 domain-containing protein; Provisional	91.55
KOG1962		216	consensus B-cell receptor-associated protein and r	91.47
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.45
PF06156		107	DUF972: Protein of unknown function (DUF972); Inte	91.41
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	91.36
PF06120		301	Phage_HK97_TLTM: Tail length tape measure protein;	91.34
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	91.29
COG4985		289	ABC-type phosphate transport system, auxiliary com	91.28
PF00038		312	Filament: Intermediate filament protein; InterPro:	91.2
KOG0996		1293	consensus Structural maintenance of chromosome pro	91.02
PF15285		25	BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB:	90.79
PRK04778		569	septation ring formation regulator EzrA; Provision	90.73
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.67
PF10146		230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.55
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	90.19
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	90.11
KOG2072		988	consensus Translation initiation factor 3, subunit	90.02
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.01
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	90.0
KOG4673		961	consensus Transcription factor TMF, TATA element m	90.0
PRK01156		895	chromosome segregation protein; Provisional	89.96
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	89.94
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.92
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.77
PRK01156		895	chromosome segregation protein; Provisional	89.77
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.73
COG4942		420	Membrane-bound metallopeptidase [Cell division and	89.68
COG2433		652	Uncharacterized conserved protein [Function unknow	89.61
PRK09039		343	hypothetical protein; Validated	89.54
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	89.42
PF07106		169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.21
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	89.15
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	89.14
PF10212		518	TTKRSYEDQ: Predicted coiled-coil domain-containing	89.05
TIGR02977		219	phageshock_pspA phage shock protein A. Members of	88.97
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	88.89
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.74
PF00038		312	Filament: Intermediate filament protein; InterPro:	88.7
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	88.7
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	88.68
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	88.65
PF05384		159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	88.57
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.18
KOG0288		459	consensus WD40 repeat protein TipD [General functi	87.99
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	87.99
COG4372		499	Uncharacterized protein conserved in bacteria with	87.93
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.9
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.84
COG5185		622	HEC1 Protein involved in chromosome segregation, i	87.75
KOG2264		907	consensus Exostosin EXT1L [Signal transduction mec	87.7
PF10186		302	Atg14: UV radiation resistance protein and autopha	87.51
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	87.37
KOG1962		216	consensus B-cell receptor-associated protein and r	87.27
PF14662		193	CCDC155: Coiled-coil region of CCDC155	87.08
KOG0933		1174	consensus Structural maintenance of chromosome pro	87.03
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	86.94
TIGR01010		362	BexC_CtrB_KpsE polysaccharide export inner-membran	86.91
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.82
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	86.68
TIGR03752		472	conj_TIGR03752 integrating conjugative element pro	86.52
KOG0933		1174	consensus Structural maintenance of chromosome pro	86.5
KOG0982		502	consensus Centrosomal protein Nuf [Cell cycle cont	86.38
PRK00409		782	recombination and DNA strand exchange inhibitor pr	86.07
PF05266		190	DUF724: Protein of unknown function (DUF724); Inte	85.98
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	85.92
PF05700		221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	85.9
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	85.85
KOG2391		365	consensus Vacuolar sorting protein/ubiquitin recep	85.76
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	85.59
TIGR01069		771	mutS2 MutS2 family protein. Function of MutS2 is u	85.45
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	85.26
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	84.85
PRK11519		719	tyrosine kinase; Provisional	84.84
PF11932		251	DUF3450: Protein of unknown function (DUF3450); In	84.64
PRK10698		222	phage shock protein PspA; Provisional	84.42
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	84.32
TIGR02894		161	DNA_bind_RsfA transcription factor, RsfA family. I	84.29
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	84.24
KOG1899		861	consensus LAR transmembrane tyrosine phosphatase-i	83.85
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	83.62
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	83.52
PRK09841		726	cryptic autophosphorylating protein tyrosine kinas	83.46
PRK00409		782	recombination and DNA strand exchange inhibitor pr	83.37
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	83.26
KOG0964		1200	consensus Structural maintenance of chromosome pro	83.15
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	83.03
KOG4438		446	consensus Centromere-associated protein NUF2 [Cell	83.01
PF06005		72	DUF904: Protein of unknown function (DUF904); Inte	82.86
PF11414		84	Suppressor_APC: Adenomatous polyposis coli tumour	82.8
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	82.69
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	82.6
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	82.54
PF06005		72	DUF904: Protein of unknown function (DUF904); Inte	82.41
PRK00106		535	hypothetical protein; Provisional	82.4
PRK10361		475	DNA recombination protein RmuC; Provisional	82.32
PRK13169		110	DNA replication intiation control protein YabA; Re	82.27
PRK09841		726	cryptic autophosphorylating protein tyrosine kinas	82.2
PF12329		74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	82.09
TIGR03752		472	conj_TIGR03752 integrating conjugative element pro	82.04
PRK12704		520	phosphodiesterase; Provisional	81.71
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	81.56
KOG4460		741	consensus Nuclear pore complex, Nup88/rNup84 compo	81.5
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	81.49
KOG3647		338	consensus Predicted coiled-coil protein [General f	81.31
TIGR01069		771	mutS2 MutS2 family protein. Function of MutS2 is u	81.26
TIGR01000		457	bacteriocin_acc bacteriocin secretion accessory pr	81.25
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	81.2
TIGR02231		525	conserved hypothetical protein. This family consis	81.13
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	81.02
TIGR02338		110	gimC_beta prefoldin, beta subunit, archaeal. Chape	80.87
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	80.81
KOG4360		596	consensus Uncharacterized coiled coil protein [Fun	80.79
PF08647		96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	80.52
PF11180		192	DUF2968: Protein of unknown function (DUF2968); In	80.1
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	80.1
PF10234		267	Cluap1: Clusterin-associated protein-1; InterPro:	80.04

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=4.1e-104  Score=813.62  Aligned_cols=416  Identities=52%  Similarity=0.866  Sum_probs=377.0

Q ss_pred             ccccccccccccccccccccccCcccccCCCCC-CCCCCCCCCCCCCCCcccccCCCCCCCceEEEecCCCCCCCCCCCC
Q 010914           30 QLAMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHI  108 (497)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~d~s~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~eS~v~l~~~~~~~~~~~~~~  108 (497)
                      .+.-...++|+..++.++.+||.+++|+|.+.+ |..+.|+++++++. ++.. ++.++.++||+.+......+....+-
T Consensus        17 ~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~~~~~~~p~r~~~~~~~   94 (447)
T KOG2751|consen   17 PCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSVVVYFSPPVRDSDTEHN   94 (447)
T ss_pred             hhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccceecccCcccccccccc
Confidence            344456789999999999999999999998865 88888999988876 4443 68888999999988766544333333


Q ss_pred             CCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010914          109 PPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR  188 (497)
Q Consensus       109 ~~~~~~~~~~~~~~~~~ls~~i~~l~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~  188 (497)
                      .....+..+....+.+++++++++++++|+|+|+|++||||+|.||++.|++.|+++++.+++|+++|++|+++|+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~  174 (447)
T KOG2751|consen   95 LSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQ  174 (447)
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            33333333445667789999999999999999999999999999999999999999999999999999999999998764


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010914          189 DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS  268 (497)
Q Consensus       189 ~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~  268 (497)
                      + .+++++.+|+++++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+++++.+++++++||++
T Consensus       175 ~-~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~  253 (447)
T KOG2751|consen  175 D-VSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEA  253 (447)
T ss_pred             c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence            3 478899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeee
Q 010914          269 KIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKII  348 (497)
Q Consensus       269 q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~kf~y~YkLv  348 (497)
                      |+++++.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++|++++|++|. +|+||
T Consensus       254 q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~-~y~lv  332 (447)
T KOG2751|consen  254 QIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFV-RYRLV  332 (447)
T ss_pred             HHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccc-eeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             ecCCCceeeecCC---ceeecc--cCCCCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCccc
Q 010914          349 PMGSYPRIMDSNN---NTYELF--GPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVE  423 (497)
Q Consensus       349 PmGS~SkI~~~~~---~~~eLy--g~~~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~kdkIg  423 (497)
                      ||||+|+|+....   ..+++|  |+.+|||++|||+||+|||+||+||++++++++        +.+.+||.|++|+|+
T Consensus       333 p~GshSyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~--------~~~~lPy~ie~d~i~  404 (447)
T KOG2751|consen  333 PMGSHSYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKD--------TSFNLPYDIEKDKLN  404 (447)
T ss_pred             cccchhHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcC--------cccCCcchhhccccc
Confidence            9999999987543   456777  445899999999999999999999999999876        469999999999999


Q ss_pred             ee----eEEecCCCCchhhHHHHHHHhhHHHHHHHHhh
Q 010914          424 NY----SITQSFNKQENWTKALKYTLCNLKWALFWFVG  457 (497)
Q Consensus       424 g~----SIkl~~n~~e~WTkAlK~lLtNlKWlLaw~~~  457 (497)
                      |.    +|++.||++++||+||||||||+||++|||+.
T Consensus       405 d~~~~y~i~~~fN~De~WTrALkFmLTnlK~~~A~vss  442 (447)
T KOG2751|consen  405 DPSSSYSIKVQFNSDENWTRALKFMLTNLKWLLAWVSS  442 (447)
T ss_pred             CCccceeEEeeecchHHHHHHHHHHHhccHHHHHHHhh
Confidence            86    59999999999999999999999999999984

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]	Back alignment and domain information

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG2433 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility	Back alignment and domain information

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>COG2433 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif	Back alignment and domain information

>TIGR02977 phageshock_pspA phage shock protein A	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>TIGR01069 mutS2 MutS2 family protein	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11519 tyrosine kinase; Provisional	Back alignment and domain information

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>PRK10698 phage shock protein PspA; Provisional	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional	Back alignment and domain information

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation	Back alignment and domain information

>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PRK10361 DNA recombination protein RmuC; Provisional	Back alignment and domain information

>PRK13169 DNA replication intiation control protein YabA; Reviewed	Back alignment and domain information

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional	Back alignment and domain information

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures	Back alignment and domain information

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]	Back alignment and domain information

>TIGR01069 mutS2 MutS2 family protein	Back alignment and domain information

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>TIGR02231 conserved hypothetical protein	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]	Back alignment and domain information

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []	Back alignment and domain information

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		497
4ddp_A		210	Crystal Structure Of Beclin 1 Evolutionarily Conser		3e-42
3vp7_A		220	Crystal Structure Of The Beta-Alpha Repeated, Autop		4e-15

>pdb|4DDP|A Chain A, Crystal Structure Of Beclin 1 Evolutionarily Conserved Domain(Ecd) Length = 210

Back alignment and structure

Iteration: 1

Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/207 (42%), Positives = 120/207 (57%), Gaps = 22/207 (10%) Query: 261 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEIN 320 +E ++ +++ +Q L+ LK+TNV N F IWH G+FGTINNFRLGRLP +PVEW+EIN Sbjct: 5 DELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEIN 64 Query: 321 AAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYEL----FGPVNLFWST 376 AAWGQ LLLH + KF R +++P G++ + + + EL G + FW Sbjct: 65 AAWGQTVLLLHALANKMGLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDN 123 Query: 377 RYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYK--IENDKVEN-------YSI 427 ++D AM FL C++ F E + F LPY+ +E K+E+ YSI Sbjct: 124 KFDHAMVAFLDCVQQFKEEVEKGETR--------FCLPYRMDVEKGKIEDTGGSGGSYSI 175 Query: 428 TQSFNKQENWTKALKYTLCNLKWALFW 454 FN +E WTKALK+ L NLKW L W Sbjct: 176 KTQFNSEEQWTKALKFMLTNLKWGLAW 202

PyMOL of 4ddp

>pdb|3VP7|A Chain A, Crystal Structure Of The Beta-Alpha Repeated, Autophagy-Specific (Bara) Domain Of Vps30ATG6 Length = 220

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		497
4ddp_A		210	Beclin-1; ECD, autophagy, membrane binding, membra	5e-81
3vp7_A		220	Vacuolar protein sorting-associated protein 30; ta	5e-73
3q8t_A		96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	3e-21
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-09
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-04
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	7e-06
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-05
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-04

>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens} Length = 210	Back alignment and structure

 Score =  249 bits (638), Expect = 5e-81
 Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 22/211 (10%)

Query: 257 IAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEW 316
           +   +E  ++ +++  +Q  L+ LK+TNV N  F IWH G+FGTINNFRLGRLP +PVEW
Sbjct: 1   LELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEW 60

Query: 317 DEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYEL----FGPVNL 372
           +EINAAWGQ  LLLH +      KF  R +++P G++  +    + + EL     G +  
Sbjct: 61  NEINAAWGQTVLLLHALANKMGLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRF 119

Query: 373 FWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDK---------VE 423
           FW  ++D AM  FL C++ F E             +  F LPY+++ +K           
Sbjct: 120 FWDNKFDHAMVAFLDCVQQFKEEVEKG--------ETRFCLPYRMDVEKGKIEDTGGSGG 171

Query: 424 NYSITQSFNKQENWTKALKYTLCNLKWALFW 454
           +YSI   FN +E WTKALK+ L NLKW L W
Sbjct: 172 SYSIKTQFNSEEQWTKALKFMLTNLKWGLAW 202

PyMOL of 4ddp

>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae} Length = 220	Back alignment and structure

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Length = 96	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		497
4ddp_A		210	Beclin-1; ECD, autophagy, membrane binding, membra	100.0
3vp7_A		220	Vacuolar protein sorting-associated protein 30; ta	100.0
3q8t_A		96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	99.72
2p1l_B		31	Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2	98.33
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.4
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	96.28
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.04
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	95.66
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	95.64
3q8t_A		96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	95.61
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	95.2
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	95.13
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	95.11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.01
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.22
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	94.17
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	94.11
3hnw_A		138	Uncharacterized protein; coiled-coil, structural g	94.05
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	93.33
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	91.86
2v4h_A		110	NF-kappa-B essential modulator; transcription, met	90.36
1l8d_A		112	DNA double-strand break repair RAD50 ATPase; zinc	89.61
3bas_A		89	Myosin heavy chain, striated muscle/general contro	89.46
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	89.23
3s4r_A		93	Vimentin; alpha-helix, cytoskeleton, intermediate	89.13
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	88.06
3a7p_A		152	Autophagy protein 16; coiled-coil, coiled coil, cy	87.98
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.83
3a7p_A		152	Autophagy protein 16; coiled-coil, coiled coil, cy	87.46
3hnw_A		138	Uncharacterized protein; coiled-coil, structural g	87.14
3bas_A		89	Myosin heavy chain, striated muscle/general contro	86.28
1deq_A		390	Fibrinogen (alpha chain); coiled-coil, blood clott	85.86
2jee_A		81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	84.16
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	83.38
2zqm_A		117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	83.03
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	82.85
3iox_A		497	AGI/II, PA; alpha helix, PPII helix, supersandwich	81.77
3mq9_A		471	Bone marrow stromal antigen 2 fused to maltose-BI	81.69
1l8d_A		112	DNA double-strand break repair RAD50 ATPase; zinc	80.94
3nmd_A		72	CGMP dependent protein kinase; leucine zipper, coi	80.87
2jee_A		81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	80.43
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	80.3
3ghg_A		562	Fibrinogen alpha chain; triple-stranded coiled coi	80.16
3s9g_A		104	Protein hexim1; cyclin T-binding domain (TBD), cyc	80.09

>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2.1e-79  Score=587.72  Aligned_cols=192  Identities=44%  Similarity=0.900  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 010914          258 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF  337 (497)
Q Consensus       258 ~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l  337 (497)
                      ++++|++|+++||+++++|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus         2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l   81 (210)
T 4ddp_A            2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM   81 (210)
T ss_dssp             ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeeecCCCceeeecCC--ceeecccCC--CCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 010914          338 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGPV--NLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL  413 (497)
Q Consensus       338 ~~kf~y~YkLvPmGS~SkI~~~~~--~~~eLyg~~--~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~L  413 (497)
                      +++|+ +|+|+||||+|+|++..+  .+|+||+++  ++|++++||+||+|||+||+||++++++.+        ++++|
T Consensus        82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l  152 (210)
T 4ddp_A           82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL  152 (210)
T ss_dssp             TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred             CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence            99999 999999999999998653  589999754  789999999999999999999999998754        47999


Q ss_pred             ceee--eCCccc-------eeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhC
Q 010914          414 PYKI--ENDKVE-------NYSITQSFNKQENWTKALKYTLCNLKWALFWFVGN  458 (497)
Q Consensus       414 PY~I--~kdkIg-------g~SIkl~~n~~e~WTkAlK~lLtNlKWlLaw~~~~  458 (497)
                      ||+|  ++|||+       |+|||+++|++|+||+||||||||+||+|||++..
T Consensus       153 PY~I~~~~dkI~D~~~~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~  206 (210)
T 4ddp_A          153 PYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQ  206 (210)
T ss_dssp             SSCEETTTTEEECTTTTCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCEecCccCCCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999  799997       79999999999999999999999999999999863

PyMOL of 4ddp

>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}	Back alignment and structure

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}	Back alignment and structure

>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}	Back alignment and structure

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1	Back alignment and structure

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}	Back alignment and structure

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A	Back alignment and structure

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A	Back alignment and structure

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}	Back alignment and structure

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1	Back alignment and structure

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}	Back alignment and structure

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*	Back alignment and structure

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00