Citrus Sinensis ID: 010917

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
Protein Sequence
MSTARKLKVMASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEccccEEEEEccccEEEcccccEEccccEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccccccHHHHHcccccccccEEEccccccccccEEEcccccccccccccccEEEccHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccEEEEEEEcccccEEEEEcccccEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEEEEEcccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccccEEEEEccccccccccccccHHHHccccccccccccccEEcccccccccHHHHHHcccEEEEccEEEEEcccccEEEEccccEEEccEEEEEccccccccccccccccccEEEEEcHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHccHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEEEccccEEcccEEEEEEEccccHHHHHHcccEEccccEEEccccccccccEEEEEccccccccHcccEEEEcccHHHHHHHHHHHHHHHcccccccccccEEEccccEEEEEEcEEEEEcccccccEEEEEccccccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MSTARKLKVMASVSNslsfkhglslwcpqspslhrirhsSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVehgmadgrlcivskeayapyerpaltkgylfpldkkparlpgfhtcvgsggerqtpewykekgiemiyqdpvtsidiEKQTLITNSGKLLKYGSLIvatgctasrfpekiggylpgvhyirdVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVgwkldttiifpenhllqrlftpSLAQRYEQLYQQNGVKFVKGASiknleagsdgrVAAVkledgstidadtivigigakptvspfervglnssvggiqvdgqfrtrmpgifaigdvaafplkmydrtarveHVDHARQSAQHCIKALLSAQthtydylpyFYSRVFEYEGSPRKVWWQFFgdnvgetieignfdpkiatFWIDSGKLKGVlvesgspeefqllptlarsqpfvdkakLQQASSVEEALEIARAALPVEAAV
Flexible Loop (DISEMBL)
mstarklkVMASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHtcvgsggerqtpeWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIknleagsdGRVAAVKledgstidaDTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Low Complexity Region (SEG)
MSTARKLKVMASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKvvvvgggYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered region (IsUnstruct)
****************LSFKHGLSLWCPQSPSLHRIRH*SAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVE************************************************
Disordered Region (DISOPRED)
**************NSLSFKHGLSLWCPQSPSLHRIR*************************FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI****L******
Disordered Region (DISEMBL)
***********SVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH********QHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered Region (DISPRO)
*STARKLKVMASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIAR*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTARKLKVMASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	497	2.2.26 [Sep-21-2011]
P92947	493	Monodehydroascorbate redu	yes	no	0.979	0.987	0.795	0.0
Q40977	433	Monodehydroascorbate redu	N/A	no	0.802	0.921	0.457	1e-105
Q43497	433	Monodehydroascorbate redu	N/A	no	0.808	0.928	0.451	1e-105
Q9LFA3	434	Probable monodehydroascor	no	no	0.808	0.926	0.425	6e-95
Q42711	434	Monodehydroascorbate redu	N/A	no	0.820	0.940	0.457	1e-94
Q93WJ8	435	Probable monodehydroascor	no	no	0.772	0.882	0.429	8e-94
Q9LK94	488	Probable monodehydroascor	no	no	0.766	0.780	0.427	1e-93
Q9SR59	441	Probable monodehydroascor	no	no	0.770	0.868	0.408	1e-87
P43494	427	Rhodocoxin reductase OS=R	yes	no	0.647	0.754	0.323	2e-39
P16640	422	Putidaredoxin reductase O	yes	no	0.665	0.784	0.306	1e-36

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/495 (79%), Positives = 434/495 (87%), Gaps = 8/495 (1%)

Query: 1   MSTARKLKVMASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSF 56
           MS  R+  VMA  S +L  K GLSLWCP SPSL R    R S        R  V A  SF
Sbjct: 1   MSAVRR--VMALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SF 56

Query: 57  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 116
           ANENREFVIVGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KK
Sbjct: 57  ANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKK 116

Query: 117 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 176
           PARLPGFHTCVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI
Sbjct: 117 PARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLI 176

Query: 177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 236
           +ATGCTASRFP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV
Sbjct: 177 IATGCTASRFPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAV 236

Query: 237 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 296
            W LDTTI+FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVK
Sbjct: 237 AWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVK 296

Query: 297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
           L DGSTI+ADT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFP
Sbjct: 297 LADGSTIEADTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFP 356

Query: 357 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFF 416
           LK+YDR  RVEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFF
Sbjct: 357 LKIYDRMTRVEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFF 416

Query: 417 GDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQ 476
           GDNVGET+E+GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  
Sbjct: 417 GDNVGETVEVGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLAS 476

Query: 477 ASSVEEALEIARAAL 491
           ASSVEEALEIA+AAL
Sbjct: 477 ASSVEEALEIAQAAL 491

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/422 (45%), Positives = 271/422 (64%), Gaps = 23/422 (5%)

Query: 62  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 121
           +++I+GGG +AGYAAR FV+ G+  G L I+SKEA APYERPAL+K YLFP  + PARLP
Sbjct: 6   KYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFP--ESPARLP 63

Query: 122 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 181
           GFHTCVGSGGER  PEWY EKGI++     + S D+  + L + +G+   Y +L++ATG 
Sbjct: 64  GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123

Query: 182 TASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEVAAAAVG 237
              R  +   IG     + Y+R+V DAD L  ++++ K  K VVVGGGYIG+E++A    
Sbjct: 124 AVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKL 183

Query: 238 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 297
             LD T+++PE   + RLFT  +A  YE  Y   G+  +KG       A SDG V  VKL
Sbjct: 184 NDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKL 243

Query: 298 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
           +DG  ++AD +++G+G +P +S F +  +    GGI+ D  F+T +P ++A+GDVA FPL
Sbjct: 244 KDGRVLEADIVIVGVGGRPQISLF-KGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPL 302

Query: 358 KMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWW 413
           K+Y+   RVEHVDHAR+SA+   KA+ +A        YDYLPYFYSR F+       + W
Sbjct: 303 KLYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFD-------LSW 355

Query: 414 QFFGDNVGETIEIGNFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 468
           QF+GDNVGET+  G+ D     PK  T+WI  GK+ G  +E G+P+E + +  +AR++P 
Sbjct: 356 QFYGDNVGETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPA 415

Query: 469 VD 470
           V+
Sbjct: 416 VE 417

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/425 (45%), Positives = 273/425 (64%), Gaps = 23/425 (5%)

Query: 56  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 115
            A ++ ++VIVGGG +AGYAAR F + G+  G L I+SKEA APYERPAL+K YLFP  +
Sbjct: 1   MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--E 58

Query: 116 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 175
             ARLPGFH CVGSGGERQ PEWY EKGI +I    +   D+  +TL++ +G+  KY +L
Sbjct: 59  GAARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTL 118

Query: 176 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEV 231
           ++ATG T  +  +    G     + Y+R++ DAD L+ +L+  K  K VVVGGGYIG+E+
Sbjct: 119 VIATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLEL 178

Query: 232 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 291
           +A      ++  +++PE   + RLFT  +A  YE  Y+  GV  +KG      +   +G 
Sbjct: 179 SAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGE 238

Query: 292 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 351
           V  VKL+DG  ++AD +V+G+GA+P  + F +  +    GGI+ D  F+T +P ++A+GD
Sbjct: 239 VKEVKLKDGRVLEADIVVVGVGARPLTTLF-KGQVEEEKGGIKTDAFFKTSVPDVYAVGD 297

Query: 352 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGS 407
           VA FPLKMY+   RVEHVDH+R+SA+  +KA+ +++       YDYLPYFYSR F+    
Sbjct: 298 VATFPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFD---- 353

Query: 408 PRKVWWQFFGDNVGETIEIGNFDPKIAT-----FWIDSGKLKGVLVESGSPEEFQLLPTL 462
              + WQF+GDNVGET+  G+ DP  AT     +WI  GK+ G  +ESGSPEE + +  +
Sbjct: 354 ---LSWQFYGDNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKV 410

Query: 463 ARSQP 467
           A+ QP
Sbjct: 411 AKVQP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  348 bits (893), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 181/425 (42%), Positives = 266/425 (62%), Gaps = 23/425 (5%)

Query: 56  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 115
            A ++ +++I+GGG +AGYAA+ F   G+  G L ++SKEA APYERPAL+KGYLFP  +
Sbjct: 1   MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--E 58

Query: 116 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 175
             ARLPGFH CVGSGGE+  PE YK+KGIE+I    +   D+  ++L++ +G + KY +L
Sbjct: 59  GAARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTL 118

Query: 176 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEV 231
           I+ATG T  R  +    G     + Y+R++ DAD L+ +++  K    V  G  YIG+E+
Sbjct: 119 IIATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLEL 178

Query: 232 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 291
           +A      LD T++FPE   + RLFT  +A  YE  Y   GVK +KG       A  +G 
Sbjct: 179 SAVLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGE 238

Query: 292 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 351
           V  V+L+DG T++AD +++G+GAKP  S F +  +    GGI+ D  F+T +P ++A+GD
Sbjct: 239 VKEVQLKDGRTLEADIVIVGVGAKPLTSLF-KGQVEEDKGGIKTDAFFKTSVPDVYAVGD 297

Query: 352 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGS 407
           VA FPLKMY    RVEHVDH+R+SA+  +KA+ +A+       YDYLP+FYSR F+    
Sbjct: 298 VATFPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFD---- 353

Query: 408 PRKVWWQFFGDNVGETIEIG-----NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTL 462
              + WQF+GDNVG+++  G     N  P+   +W+  GK+ G  +E GS +E + L  +
Sbjct: 354 ---LSWQFYGDNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKV 410

Query: 463 ARSQP 467
           A+++P
Sbjct: 411 AKARP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  347 bits (891), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 198/433 (45%), Positives = 278/433 (64%), Gaps = 25/433 (5%)

Query: 56  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 115
            A+E  ++VI+GGG AAGYAAR FV+ G+  G L I+SKEA APYERPAL+K YLFP  +
Sbjct: 1   MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFP--E 58

Query: 116 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 175
            PARLPGFH CVGSGGER  P+WYKEKGIE+I    +   D+  + L +  GK+  Y +L
Sbjct: 59  SPARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTL 118

Query: 176 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKK---VVVVGGGYIGME 230
           I+ATG T  +  +    G     + Y+R++ DAD L+ ++ KAK+   VVVVGGGYIG+E
Sbjct: 119 IIATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAI-KAKENGKVVVVGGGYIGLE 177

Query: 231 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 290
           + AA      D ++++PE   + RLFTP +A  YE  Y Q G+  +KG         ++G
Sbjct: 178 LGAALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNG 237

Query: 291 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 350
            V  VKL+DG  ++AD +V+G+GA+P  S F +  +    GGI+ D  F+T +P ++A+G
Sbjct: 238 EVKEVKLKDGRVLEADIVVVGVGARPLTSLF-KGQIVEEKGGIKTDEFFKTSVPDVYAVG 296

Query: 351 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEG 406
           DVA FPLK+Y+   RVEHVDH+R+SA+  +KA+ +++       YDYLPYFYSR F+   
Sbjct: 297 DVATFPLKLYNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFD--- 353

Query: 407 SPRKVWWQFFGDNVGETIEIGNFDP-----KIATFWIDSGKLKGVLVESGSPEEFQLLPT 461
               + WQF+GDNVG+ +  G+  P     K  ++WI  GK+ G  +ESGSPEE + +  
Sbjct: 354 ----LSWQFYGDNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAK 409

Query: 462 LARSQPFVDKAKL 474
           +AR QP V+ + L
Sbjct: 410 VARIQPSVESSDL 422

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  344 bits (883), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 175/407 (42%), Positives = 251/407 (61%), Gaps = 23/407 (5%)

Query: 77  RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136
           R F   G+  G L I+S+E   PYERPAL+KGY+   +K  A LP F+   G GGERQ P
Sbjct: 23  REFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENK--ATLPNFYVAAGIGGERQFP 80

Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYL 194
           +WYKEKGIE+I    +   D+  +TL++ +G++ KY +L+ ATG +  R  +    G   
Sbjct: 81  QWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADA 140

Query: 195 PGVHYIRDVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 252
             + Y+R++ DAD L  ++E  +K   VVVGGGYIG+E+ AA     LD T+++PE   +
Sbjct: 141 KNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCM 200

Query: 253 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 312
            RLFT  +A  YE  Y   G+  VKG         S+G V  VKL+DG T++AD +++G+
Sbjct: 201 PRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGV 260

Query: 313 GAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 372
           G +P +S F +  +    GG++ DG F+T +P ++AIGDVA FP+K+Y+   RVEHVDHA
Sbjct: 261 GGRPIISLF-KDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHA 319

Query: 373 RQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGN 428
           R+SA+  +KA+ +A+       YDYLPYFYSR F+       + WQF+GDNVGE++  G+
Sbjct: 320 RKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFD-------LSWQFYGDNVGESVLFGD 372

Query: 429 FD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 470
            D     PK  ++WI   K+ G  +E GSPEE   +  LAR+QP V+
Sbjct: 373 NDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVE 419

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  344 bits (882), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 170/398 (42%), Positives = 255/398 (64%), Gaps = 17/398 (4%)

Query: 79  FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138
           F   G++DG LCI+S+E  APYERPAL+KG+L P  + PARLP FHTCVG+  E+ TP+W
Sbjct: 23  FTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPSFHTCVGANDEKLTPKW 80

Query: 139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPG 196
           YK+ GIE++    V S+D+ ++TL++++G+ + Y  LI+ATG  A +  E    G     
Sbjct: 81  YKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAEN 140

Query: 197 VHYIRDVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 254
           V Y+RD+ADA+ L + ++ +     VV+GGGYIGME AA+ V  K++ T++FPE H + R
Sbjct: 141 VCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200

Query: 255 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314
           LFTP +A  YE  Y+  GVKF+KG  + + E  S+ +V AV L+DGS + AD +V+GIG 
Sbjct: 201 LFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGI 260

Query: 315 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 374
           +P  S FE   L    GGI+V+ + ++    ++AIGDVA FP+K++    R+EHVD AR+
Sbjct: 261 RPNTSLFEG-QLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARK 319

Query: 375 SAQHCIKALLS-AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD--P 431
           SA+H + A++   +T  +DYLP+FYSRVF +        WQF+GD  G+ +  G ++   
Sbjct: 320 SARHAVSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFYGDPTGDVVHFGEYEDGK 372

Query: 432 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 469
               +W+  G L G  +E G+ EE++ +    + +P V
Sbjct: 373 SFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  323 bits (829), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/409 (40%), Positives = 248/409 (60%), Gaps = 26/409 (6%)

Query: 77  RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136
           R F   G+  G L I+SKE   P+ERP LTK Y+  L+  P  L   + C G+G  +Q P
Sbjct: 23  REFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LANIYVCAGTGEAKQYP 80

Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GY 193
            WYKEKGI++I    +   D+  +TL+++ GK+ KY +L++ATG T  R  E IG     
Sbjct: 81  NWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEAD 139

Query: 194 LPGVHYIRDVADADALISSLE---KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 250
           +  + Y+R++ D+D L  ++E   +  K V++GGG++G+E+++A      + T++FPE  
Sbjct: 140 VKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPW 199

Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
           L+ R FT  +A  YE  Y   G+K +KG         SDG V  VKLEDG T++A+ +V 
Sbjct: 200 LVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVA 259

Query: 311 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 370
           G+GA+P  S F +  L    GGI+ DG F+T +P ++A+GDVA FP+KMY  T RVEH D
Sbjct: 260 GVGARPATSLF-KGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHAD 318

Query: 371 HARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 426
           +AR+SA   +KA+ + +       YDYLPYFYSR F       K+ W+F+G+NVGE++  
Sbjct: 319 NARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVLF 371

Query: 427 GNFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 470
           G+ D     PK  T+W+  GK+ GV +E G+ EE + +  +AR+QP V+
Sbjct: 372 GDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVE 420

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 167/343 (48%), Gaps = 21/343 (6%)

Query: 63  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--PLDKKPARL 120
            VI+G G A   AA +   HG + G + +V  E   PY+RP L+K YL   P  +  A  
Sbjct: 3   IVIIGSGQAGFEAAVSLRSHGFS-GTITLVGDEPGVPYQRPPLSKAYLHSDPDRESLALR 61

Query: 121 PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG 180
           P               +++ +  I +    PV  ID + Q +       ++Y  LI+ATG
Sbjct: 62  PA--------------QYFDDHRITLTCGKPVVRIDRDAQRVELIDATAIEYDHLILATG 107

Query: 181 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 240
                 P   G  LPGVHY+R   +A++L SS+     +VV+G G+IG+EVAAAA    L
Sbjct: 108 ARNRLLPVP-GANLPGVHYLRTAGEAESLTSSMASCSSLVVIGAGFIGLEVAAAARKKGL 166

Query: 241 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 300
           D T++   +  + R  +  ++  +   + ++GV       +K + A +DGR A V    G
Sbjct: 167 DVTVVEAMDRPMARALSSVMSGYFSTAHTEHGVHMRLSTGVKTINA-ADGRAAGVTTNSG 225

Query: 301 STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 360
             I AD +V+GIG  P +      GL     GI VD   RT    I AIGD AA+P+   
Sbjct: 226 DVIHADAVVVGIGVVPNIELAALTGLPVD-NGIVVDEYLRTPDENISAIGDCAAYPIPGK 284

Query: 361 DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 403
               R+E V +A   A+ C+ A L+  +  Y  +P+F+S  +E
Sbjct: 285 AGLVRLESVQNAVDQAR-CLAAQLTGTSTHYRSVPWFWSEQYE 326

The degradation of the thiocarbamate herbicide EPTC by cytochrome CYP116 (thcB) requires the participation of a flavoprotein, rhodocoxin reductase, and an iron-sulfur protein, rhodocoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Rhodococcus erythropolis (taxid: 1833)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 171/349 (48%), Gaps = 18/349 (5%)

Query: 58  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 117
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56

Query: 118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 177
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 57  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108

Query: 178 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 235
           ATG      P   G  G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168

Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 294
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287

Query: 355 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 403
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 335

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
359474156	497	PREDICTED: monodehydroascorbate reductas	0.995	0.995	0.831	0.0
297742237	490	unnamed protein product [Vitis vinifera]	0.981	0.995	0.836	0.0
147834040	889	hypothetical protein VITISV_021486 [Viti	0.985	0.551	0.813	0.0
224058437	497	predicted protein [Populus trichocarpa]	0.969	0.969	0.828	0.0
255537579	493	monodehydroascorbate reductase, putative	0.979	0.987	0.839	0.0
194716776	486	monodehydroascorbate reductase [Picrorhi	0.965	0.987	0.816	0.0
350536875	482	monodehydroascorbate reductase [Solanum	0.969	1.0	0.817	0.0
110265126	482	chloroplast monodehydroascorbate reducta	0.969	1.0	0.815	0.0
30696924	493	Monodehydroascorbate reductase [Arabidop	0.979	0.987	0.795	0.0
46093473	486	monodehydroascorbate reductase [Brassica	0.965	0.987	0.808	0.0

>gi|359474156|ref|XP_002278648.2| PREDICTED: monodehydroascorbate reductase, chloroplastic [Vitis vinifera]

 Score =  847 bits (2187), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/499 (83%), Positives = 457/499 (91%), Gaps = 4/499 (0%)

Query: 1   MSTARKLKVMASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFAN 58
           MS+ RKL  MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FAN
Sbjct: 1   MSSVRKL--MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFAN 58

Query: 59  ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA 118
           ENREFVIVGGGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPA
Sbjct: 59  ENREFVIVGGGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPA 118

Query: 119 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 178
           RLPGFHTCVGSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+A
Sbjct: 119 RLPGFHTCVGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIA 178

Query: 179 TGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 238
           TGCTASR P+KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GW
Sbjct: 179 TGCTASRLPDKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGW 238

Query: 239 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 298
           KLDTTIIFPE+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE
Sbjct: 239 KLDTTIIFPEDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLE 298

Query: 299 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
           +GSTI+ADTI+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLK
Sbjct: 299 NGSTIEADTIIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLK 358

Query: 359 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 418
           MY+R ARVEHVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGD
Sbjct: 359 MYNRIARVEHVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGD 418

Query: 419 NVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQAS 478
           NVGET+EIGNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KLQ+AS
Sbjct: 419 NVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKAS 478

Query: 479 SVEEALEIARAALPVEAAV 497
           SVEEALE+A A +   AAV
Sbjct: 479 SVEEALELAHAYVQAGAAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742237|emb|CBI34386.3| unnamed protein product [Vitis vinifera]

 Score =  841 bits (2173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/490 (83%), Positives = 451/490 (92%), Gaps = 2/490 (0%)

Query: 10  MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 67
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 1   MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 60

Query: 68  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 127
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 61  GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 120

Query: 128 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 121 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 180

Query: 188 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 247
           +KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFP
Sbjct: 181 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 240

Query: 248 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 307
           E+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADT
Sbjct: 241 EDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADT 300

Query: 308 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 367
           I+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVE
Sbjct: 301 IIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVE 360

Query: 368 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG 427
           HVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIG
Sbjct: 361 HVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIG 420

Query: 428 NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 487
           NFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A
Sbjct: 421 NFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELA 480

Query: 488 RAALPVEAAV 497
            A +   AAV
Sbjct: 481 HAYVQAGAAV 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834040|emb|CAN64338.1| hypothetical protein VITISV_021486 [Vitis vinifera]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/505 (81%), Positives = 453/505 (89%), Gaps = 15/505 (2%)

Query: 8   KVMASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVI 65
           K+MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVI
Sbjct: 385 KLMASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVI 444

Query: 66  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 125
           VGGGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHT
Sbjct: 445 VGGGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHT 504

Query: 126 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 185
           CVGSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR
Sbjct: 505 CVGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASR 564

Query: 186 -------------FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA 232
                         P+KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVA
Sbjct: 565 RSEDEFFSSPDFRLPDKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVA 624

Query: 233 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 292
           AAA GWKLDTTIIFPE+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V
Sbjct: 625 AAAAGWKLDTTIIFPEDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHV 684

Query: 293 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 352
            AVKLE+GSTI+ADTI+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDV
Sbjct: 685 TAVKLENGSTIEADTIIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDV 744

Query: 353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVW 412
           AAFPLKMY+R ARVEHVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+W
Sbjct: 745 AAFPLKMYNRIARVEHVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIW 804

Query: 413 WQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 472
           WQFFGDNVGET+EIGNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  
Sbjct: 805 WQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPQVDMT 864

Query: 473 KLQQASSVEEALEIARAALPVEAAV 497
           KLQ+ASSVEEALE+A A +   AAV
Sbjct: 865 KLQKASSVEEALELAHATVQAGAAV 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058437|ref|XP_002299509.1| predicted protein [Populus trichocarpa] gi|118488230|gb|ABK95934.1| unknown [Populus trichocarpa] gi|222846767|gb|EEE84314.1| predicted protein [Populus trichocarpa]

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/491 (82%), Positives = 447/491 (91%), Gaps = 9/491 (1%)

Query: 14  SNSLSFKHGLSLWCPQSPSLHRIRHSSA------KNFQRRGFVVAYSS-FANENREFVIV 66
           SN +SFKHGLSLWCPQS  LHR   SS       K F R   V A SS FANENRE+VIV
Sbjct: 9   SNPMSFKHGLSLWCPQSSPLHRTLQSSPSSSIGFKTFFRNHVVAASSSSFANENREYVIV 68

Query: 67  GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 126
           GGGNAAGYAAR+FVEHGMADG+LCIV++EAYAPYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 69  GGGNAAGYAARSFVEHGMADGKLCIVTREAYAPYERPALTKAYLFPLDKKPARLPGFHTC 128

Query: 127 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 186
           VGSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQT  T SGKLLKYG+LIVATGC+ASRF
Sbjct: 129 VGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTATTISGKLLKYGTLIVATGCSASRF 188

Query: 187 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 246
           PEKIGG LPGVHYIRDVADAD+LISSLEKA K+V+VGGGYIGMEVAAAAV WKLDTTIIF
Sbjct: 189 PEKIGGNLPGVHYIRDVADADSLISSLEKAHKLVIVGGGYIGMEVAAAAVAWKLDTTIIF 248

Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
           PENHL+QRLFTPSLAQ+YE+LYQ+NGVKF+KGASIKNLEA SDG VAA+KLE+GSTI+AD
Sbjct: 249 PENHLMQRLFTPSLAQKYEELYQENGVKFIKGASIKNLEASSDGHVAAIKLENGSTIEAD 308

Query: 307 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 366
            ++IGIGAKP V PFER+GLN+SVGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARV
Sbjct: 309 MVIIGIGAKPAVGPFERLGLNNSVGGIQVDGQFRTGIPGIFAIGDVAAFPLKMYNRMARV 368

Query: 367 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 426
           EHVDHAR+SAQHC+K+LL+A T +YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI++
Sbjct: 369 EHVDHARRSAQHCVKSLLTAHTSSYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIQV 428

Query: 427 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 486
           GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LA+SQP VDK+KLQ ASSVEEALEI
Sbjct: 429 GNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPELAKSQPIVDKSKLQSASSVEEALEI 488

Query: 487 ARAALPVEAAV 497
           AR +L  +AAV
Sbjct: 489 ARTSL--QAAV 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537579|ref|XP_002509856.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223549755|gb|EEF51243.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/493 (83%), Positives = 453/493 (91%), Gaps = 6/493 (1%)

Query: 1   MSTARKLKVMASVSNSLSFKHGLSLWCPQSPSLHRIRHSS--AKNFQRRGFVVAYSSFAN 58
           MS  RKL  MA++SNSL  KHGLSLWCP S SL+R  H+   A     R +VV  S+F+N
Sbjct: 1   MSPVRKL--MATISNSLPLKHGLSLWCPHSSSLNRTFHTPPIAYRIVHRNYVV--SAFSN 56

Query: 59  ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA 118
           ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIV+KE +APYERPALTK YLFPLDKKPA
Sbjct: 57  ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVTKEPHAPYERPALTKAYLFPLDKKPA 116

Query: 119 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 178
           RLPGFHTCVGSGGERQTP+WY+EKGIEM+Y+DPVTSIDIEKQTL TNSGKLLKYG+LI+A
Sbjct: 117 RLPGFHTCVGSGGERQTPDWYQEKGIEMLYEDPVTSIDIEKQTLGTNSGKLLKYGTLIIA 176

Query: 179 TGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 238
           TG TASRFPEKIGG LPGVHYIRDVADAD+LISSL+KA+KVVVVGGGYIGMEVAAAAVGW
Sbjct: 177 TGSTASRFPEKIGGSLPGVHYIRDVADADSLISSLDKARKVVVVGGGYIGMEVAAAAVGW 236

Query: 239 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 298
            LDTTIIFPE HLLQRLFTPSLAQRYE+LY++NGVKF+KGASIKNLEAGSDG VA VKLE
Sbjct: 237 NLDTTIIFPEKHLLQRLFTPSLAQRYEELYKENGVKFLKGASIKNLEAGSDGHVATVKLE 296

Query: 299 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
           DGS I+ADT+VIGIGAKP VSPFE+VGLN++VGGIQVDGQFRT  PGIFAIGDVAAFPLK
Sbjct: 297 DGSIIEADTVVIGIGAKPAVSPFEQVGLNATVGGIQVDGQFRTNKPGIFAIGDVAAFPLK 356

Query: 359 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 418
           MY+RTARVEHVDHAR+SA+HC+KALLSAQT TYDYLPYFYSRVFEYEGSPRK+WWQFFGD
Sbjct: 357 MYNRTARVEHVDHARRSARHCVKALLSAQTSTYDYLPYFYSRVFEYEGSPRKIWWQFFGD 416

Query: 419 NVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQAS 478
           NVGE +EIGNFDPKIATFWIDSGKLKG+L+ESGS EEFQLLP LARSQP VDK+KL +AS
Sbjct: 417 NVGEAVEIGNFDPKIATFWIDSGKLKGILLESGSAEEFQLLPKLARSQPSVDKSKLLKAS 476

Query: 479 SVEEALEIARAAL 491
           SVEEALEIA+A+L
Sbjct: 477 SVEEALEIAQASL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194716776|gb|ACF93237.1| monodehydroascorbate reductase [Picrorhiza kurrooa]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/484 (81%), Positives = 440/484 (90%), Gaps = 4/484 (0%)

Query: 10  MASVSNSLSFKHGLSLWCPQSPSLHRIRHS---SAKNFQRRGFVVAYSSFANENREFVIV 66
           M+S+SN+LSFKHGLSLWCP S S+++I      S+K F+RR F V  SSFANENREFVIV
Sbjct: 1   MSSISNALSFKHGLSLWCPHSTSVNQISQPCSVSSKIFRRR-FSVLASSFANENREFVIV 59

Query: 67  GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 126
           GGGNA+GYAARTFVEHGMADG+LCIVSKEAY PYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 60  GGGNASGYAARTFVEHGMADGKLCIVSKEAYVPYERPALTKAYLFPLDKKPARLPGFHTC 119

Query: 127 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 186
           VG+GGERQTP+WYKEKGIEM+++DPV  ID EKQTL TNSGKLLKYGSLI+ATGCTASRF
Sbjct: 120 VGAGGERQTPDWYKEKGIEMLHEDPVADIDTEKQTLTTNSGKLLKYGSLIIATGCTASRF 179

Query: 187 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 246
           P+KIGG LPGVHY+RDVADA++LISSLEK+KKVVVVGGGYIGMEVAAA V WKLDTTIIF
Sbjct: 180 PDKIGGNLPGVHYVRDVADANSLISSLEKSKKVVVVGGGYIGMEVAAATVAWKLDTTIIF 239

Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
           PE+HL+ RLFTPSLAQ+YE LY+  GV FVKGASIK+LEAGSDGRV+ VKLE+GS I+AD
Sbjct: 240 PEDHLMTRLFTPSLAQKYEDLYKDYGVNFVKGASIKSLEAGSDGRVSGVKLENGSIIEAD 299

Query: 307 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 366
           T+VIGIG KP V PFE VGLN +VGGIQVDG FRT +PGIFAIGDVAAFPLK+YDR  RV
Sbjct: 300 TVVIGIGGKPAVGPFESVGLNKTVGGIQVDGLFRTSIPGIFAIGDVAAFPLKIYDRITRV 359

Query: 367 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 426
           EHVDHAR+SAQHC+K+LL+A T TYDYLP FYSRVFE+EGSPRKVWWQFFGDNVGET+E+
Sbjct: 360 EHVDHARRSAQHCVKSLLTAHTDTYDYLPLFYSRVFEHEGSPRKVWWQFFGDNVGETVEV 419

Query: 427 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 486
           GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ+ASSV+EALEI
Sbjct: 420 GNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDVAKLQKASSVDEALEI 479

Query: 487 ARAA 490
           A+A+
Sbjct: 480 AQAS 483

Source: Picrorhiza kurrooa

Species: Picrorhiza kurrooa

Genus: Picrorhiza

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536875|ref|NP_001234013.1| monodehydroascorbate reductase [Solanum lycopersicum] gi|195542238|gb|AAZ66138.2| monodehydroascorbate reductase [Solanum lycopersicum] gi|299507810|gb|ADJ21816.1| monodehydroascorbate reductase [Solanum lycopersicum var. cerasiforme]

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/482 (81%), Positives = 436/482 (90%)

Query: 10  MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 69
           MA+  N++S K GLSLWCPQS  L+RI   S  +   R   VA SSF NENRE+V+VGGG
Sbjct: 1   MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60

Query: 70  NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 129
           NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61  NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120

Query: 130 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 189
           GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180

Query: 190 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249
           IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE 
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240

Query: 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309
           HLL RLFTPSLAQ+YEQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+V
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVV 300

Query: 310 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 369
           IGIGAKP VSPF+ VGLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHV
Sbjct: 301 IGIGAKPAVSPFDMVGLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHV 360

Query: 370 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNF 429
           DHAR+SAQHCIK+LL+A THTYDYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNF
Sbjct: 361 DHARKSAQHCIKSLLTAHTHTYDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNF 420

Query: 430 DPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARA 489
           DPK+ATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A
Sbjct: 421 DPKVATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQA 480

Query: 490 AL 491
           +L
Sbjct: 481 SL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110265126|gb|ABG57052.1| chloroplast monodehydroascorbate reductase [Solanum lycopersicum]

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/482 (81%), Positives = 436/482 (90%)

Query: 10  MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 69
           MA+  N++S K GLSLWCPQS  L+RI   S  +   R   VA SSF NENRE+V+VGGG
Sbjct: 1   MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60

Query: 70  NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 129
           NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61  NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120

Query: 130 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 189
           GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180

Query: 190 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249
           IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE 
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240

Query: 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309
           HLL RLFTPSLAQ+YEQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+V
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVV 300

Query: 310 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 369
           IGIGAKP VSPF+ VGLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHV
Sbjct: 301 IGIGAKPAVSPFDMVGLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHV 360

Query: 370 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNF 429
           DHAR+SAQHCIK+LL+A THT+DYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNF
Sbjct: 361 DHARKSAQHCIKSLLTAHTHTHDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNF 420

Query: 430 DPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARA 489
           DPK+ATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A
Sbjct: 421 DPKVATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQA 480

Query: 490 AL 491
           +L
Sbjct: 481 SL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696924|ref|NP_849839.1| Monodehydroascorbate reductase [Arabidopsis thaliana] gi|50400853|sp|P92947.3|MDARP_ARATH RecName: Full=Monodehydroascorbate reductase, chloroplastic; Short=MDAR; Flags: Precursor gi|12325013|gb|AAG52455.1|AC010852_12 putative monodehydroascorbate reductase; 10617-7178 [Arabidopsis thaliana] gi|23397057|gb|AAN31814.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|332196050|gb|AEE34171.1| Monodehydroascorbate reductase [Arabidopsis thaliana]

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/495 (79%), Positives = 434/495 (87%), Gaps = 8/495 (1%)

Query: 1   MSTARKLKVMASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSF 56
           MS  R+  VMA  S +L  K GLSLWCP SPSL R    R S        R  V A  SF
Sbjct: 1   MSAVRR--VMALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SF 56

Query: 57  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 116
           ANENREFVIVGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KK
Sbjct: 57  ANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKK 116

Query: 117 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 176
           PARLPGFHTCVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI
Sbjct: 117 PARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLI 176

Query: 177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 236
           +ATGCTASRFP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV
Sbjct: 177 IATGCTASRFPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAV 236

Query: 237 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 296
            W LDTTI+FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVK
Sbjct: 237 AWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVK 296

Query: 297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
           L DGSTI+ADT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFP
Sbjct: 297 LADGSTIEADTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFP 356

Query: 357 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFF 416
           LK+YDR  RVEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFF
Sbjct: 357 LKIYDRMTRVEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFF 416

Query: 417 GDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQ 476
           GDNVGET+E+GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  
Sbjct: 417 GDNVGETVEVGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLAS 476

Query: 477 ASSVEEALEIARAAL 491
           ASSVEEALEIA+AAL
Sbjct: 477 ASSVEEALEIAQAAL 491

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46093473|dbj|BAD14933.1| monodehydroascorbate reductase [Brassica oleracea]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/486 (80%), Positives = 428/486 (88%), Gaps = 6/486 (1%)

Query: 10  MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 65
           MA  S +L  K GLSLWCP SPSL R    R S        RG V A  SFANENREFVI
Sbjct: 1   MALASTTLPAKTGLSLWCPTSPSLARRLPARFSPIGSRIASRGVVTA--SFANENREFVI 58

Query: 66  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 125
           +GGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 59  IGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 118

Query: 126 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 185
           CVG GGERQTP+WYKEKGIEMIY+DPVT  D EKQTL TN+GK LKYGSLI+ATGCTASR
Sbjct: 119 CVGGGGERQTPDWYKEKGIEMIYEDPVTGADFEKQTLTTNTGKQLKYGSLIIATGCTASR 178

Query: 186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 245
           FP+KIGG LPGVHYIR+VADAD+LISSL K+KKVV+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 179 FPDKIGGNLPGVHYIREVADADSLISSLGKSKKVVIVGGGYIGMEVAAAAVAWNLDTTIV 238

Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
           FPE+ LLQRLFTPSLAQRYE+LY+QNGVKFVKGASI NLEAGSDGRV AVKL DGSTI+A
Sbjct: 239 FPEDQLLQRLFTPSLAQRYEELYRQNGVKFVKGASINNLEAGSDGRVTAVKLADGSTIEA 298

Query: 306 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 365
           DT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  R
Sbjct: 299 DTVVIGIGAKPAIGPFETLSMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTR 358

Query: 366 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 425
           VEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGS RKVWWQF+GDNVGET+E
Sbjct: 359 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSSRKVWWQFYGDNVGETVE 418

Query: 426 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 485
           +GNFDPKIATFWIDSG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEA+E
Sbjct: 419 VGNFDPKIATFWIDSGRLKGVLVESGSPEEFQLLPKLARSQPIVDKAKLASASSVEEAIE 478

Query: 486 IARAAL 491
           IA+AAL
Sbjct: 479 IAQAAL 484

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.979	0.987	0.785	1.7e-208
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.835	0.954	0.424	5.7e-91
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.798	0.813	0.429	6.5e-90
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.774	0.826	0.426	2e-86
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.826	0.931	0.405	6.2e-85
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.764	0.924	0.298	1.7e-36
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.768	0.947	0.289	4.4e-36
UNIPROTKB|D5IGG6	414	fdr "Ferredoxin--NAD(P)(+) red	0.653	0.785	0.305	8.5e-33
UNIPROTKB|P95034	406	Rv0688 "PUTATIVE FERREDOXIN RE	0.641	0.785	0.311	1.8e-32
UNIPROTKB|Q9L4M8	385	alkT "Rubredoxin-NAD(+) reduct	0.619	0.8	0.309	5.7e-30

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 2016 (714.7 bits), Expect = 1.7e-208, P = 1.7e-208
 Identities = 389/495 (78%), Positives = 427/495 (86%)

Query:     1 MSTARKLKVMASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSF 56
             MS  R+  VMA  S +L  K GLSLWCP SPSL R    R S        R  V A  SF
Sbjct:     1 MSAVRR--VMALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SF 56

Query:    57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 116
             ANENREFVIVGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KK
Sbjct:    57 ANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKK 116

Query:   117 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 176
             PARLPGFHTCVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI
Sbjct:   117 PARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLI 176

Query:   177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 236
             +ATGCTASRFP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK       YIGMEVAAAAV
Sbjct:   177 IATGCTASRFPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAV 236

Query:   237 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 296
              W LDTTI+FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVK
Sbjct:   237 AWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVK 296

Query:   297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
             L DGSTI+ADT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFP
Sbjct:   297 LADGSTIEADTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFP 356

Query:   357 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFF 416
             LK+YDR  RVEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFF
Sbjct:   357 LKIYDRMTRVEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFF 416

Query:   417 GDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQ 476
             GDNVGET+E+GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  
Sbjct:   417 GDNVGETVEVGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLAS 476

Query:   477 ASSVEEALEIARAAL 491
             ASSVEEALEIA+AAL
Sbjct:   477 ASSVEEALEIAQAAL 491

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 186/438 (42%), Positives = 265/438 (60%)

Query:    62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 121
             ++VIVGGG AAGYAAR F   G+  G L I+S+E   PYERPAL+KGY+  L+ K A LP
Sbjct:     8 KYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIH-LENK-ATLP 65

Query:   122 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 181
              F+   G GGERQ P+WYKEKGIE+I    +   D+  +TL++ +G++ KY +L+ ATG 
Sbjct:    66 NFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGS 125

Query:   182 TASRFPE--KIGGYLPGVHYIRDVADADALISSLE-KAK-KXXXXXXXYIGMEVAAAAVG 237
             +  R  +    G     + Y+R++ DAD L  ++E K K K       YIG+E+ AA   
Sbjct:   126 SVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKA 185

Query:   238 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 297
               LD T+++PE   + RLFT  +A  YE  Y   G+  VKG         S+G V  VKL
Sbjct:   186 NNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKL 245

Query:   298 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
             +DG T++AD +++G+G +P +S F+   +    GG++ DG F+T +P ++AIGDVA FP+
Sbjct:   246 KDGRTLEADIVIVGVGGRPIISLFKDQ-VEEEKGGLKTDGFFKTSLPDVYAIGDVATFPM 304

Query:   358 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWW 413
             K+Y+   RVEHVDHAR+SA+  +KA+ +A+       YDYLPYFYSR F+         W
Sbjct:   305 KLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLS-------W 357

Query:   414 QFFGDNVGETIEIGNFDP-----KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 468
             QF+GDNVGE++  G+ DP     K  ++WI   K+ G  +E GSPEE   +  LAR+QP 
Sbjct:   358 QFYGDNVGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPS 417

Query:   469 VDKAKLQQASSVEEALEI 486
             V+  ++     +  A  I
Sbjct:   418 VESLEVLSKEGLSFATNI 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 178/414 (42%), Positives = 263/414 (63%)

Query:    63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 122
             +VI+GGG AAGYAA  F   G++DG LCI+S+E  APYERPAL+KG+L P  + PARLP 
Sbjct:     7 YVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPS 64

Query:   123 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 182
             FHTCVG+  E+ TP+WYK+ GIE++    V S+D+ ++TL++++G+ + Y  LI+ATG  
Sbjct:    65 FHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGAR 124

Query:   183 ASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXX--YIGMEVAAAAVGW 238
             A +  E    G     V Y+RD+ADA+ L + ++ +           YIGME AA+ V  
Sbjct:   125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query:   239 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 298
             K++ T++FPE H + RLFTP +A  YE  Y+  GVKF+KG  + + E  S+ +V AV L+
Sbjct:   185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query:   299 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
             DGS + AD +V+GIG +P  S FE   L    GGI+V+ + ++    ++AIGDVA FP+K
Sbjct:   245 DGSHLPADLVVVGIGIRPNTSLFEGQ-LTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVK 303

Query:   359 MYDRTARVEHVDHARQSAQHCIKALLSA-QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFG 417
             ++    R+EHVD AR+SA+H + A++   +T  +DYLP+FYSRVF +        WQF+G
Sbjct:   304 LFGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFYG 356

Query:   418 DNVGETIEIGNF-DPK-IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 469
             D  G+ +  G + D K    +W+  G L G  +E G+ EE++ +    + +P V
Sbjct:   357 DPTGDVVHFGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 174/408 (42%), Positives = 251/408 (61%)

Query:    73 GYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE 132
             GYAA+ F   G+  G L ++SKEA APYERPAL+KGYLFP  +  ARLPGFH CVGSGGE
Sbjct:    50 GYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--EGAARLPGFHCCVGSGGE 107

Query:   133 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KI 190
             +  PE YK+KGIE+I    +   D+  ++L++ +G + KY +LI+ATG T  R  +    
Sbjct:   108 KLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVK 167

Query:   191 GGYLPGVHYIRDVADADALISSLEKAK--KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 248
             G     + Y+R++ DAD L+ +++  K  K       YIG+E++A      LD T++FPE
Sbjct:   168 GADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPE 227

Query:   249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308
                + RLFT  +A  YE  Y   GVK +KG       A  +G V  V+L+DG T++AD +
Sbjct:   228 PWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIV 287

Query:   309 VIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 368
             ++G+GAKP  S F+   +    GGI+ D  F+T +P ++A+GDVA FPLKMY    RVEH
Sbjct:   288 IVGVGAKPLTSLFKGQ-VEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEH 346

Query:   369 VDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI 424
             VDH+R+SA+  +KA+ +A+       YDYLP+FYSR F+         WQF+GDNVG+++
Sbjct:   347 VDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLS-------WQFYGDNVGDSV 399

Query:   425 EIG-----NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 467
               G     N  P+   +W+  GK+ G  +E GS +E + L  +A+++P
Sbjct:   400 LFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARP 447

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 179/441 (40%), Positives = 261/441 (59%)

Query:    62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 121
             ++VI+GGG A GYAAR F   G+  G L I+SKE   P+ERP LTK Y+  L+  P  L 
Sbjct:     8 KYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LA 65

Query:   122 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 181
               + C G+G  +Q P WYKEKGI++I    +   D+  +TL+++ GK+ KY +L++ATG 
Sbjct:    66 NIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGS 125

Query:   182 TASRFPEKIG---GYLPGVHYIRDVADADALISSLE---KAKKXXXXXXXYIGMEVAAAA 235
             T  R  E IG     +  + Y+R++ D+D L  ++E   +  K       ++G+E+++A 
Sbjct:   126 TNIRLSE-IGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSAL 184

Query:   236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
                  + T++FPE  L+ R FT  +A  YE  Y   G+K +KG         SDG V  V
Sbjct:   185 RANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEV 244

Query:   296 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF 355
             KLEDG T++A+ +V G+GA+P  S F+   L    GGI+ DG F+T +P ++A+GDVA F
Sbjct:   245 KLEDGRTLEANIVVAGVGARPATSLFKGQ-LEEEKGGIKTDGFFKTSVPDVYALGDVATF 303

Query:   356 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKV 411
             P+KMY  T RVEH D+AR+SA   +KA+ + +       YDYLPYFYSR F       K+
Sbjct:   304 PMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFF-------KL 356

Query:   412 WWQFFGDNVGETIEIGNFDPK-----IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQ 466
              W+F+G+NVGE++  G+ DPK       T+W+  GK+ GV +E G+ EE + +  +AR+Q
Sbjct:   357 SWEFYGENVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQ 416

Query:   467 PFVDKAKLQQASSVEEALEIA 487
             P V+   L   S  EE L  A
Sbjct:   417 PSVES--LDVLS--EEGLSFA 433

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 122/409 (29%), Positives = 193/409 (47%)

Query:    63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 122
             FVIVGGG  AG  A   +      GR+ +   E + PY+RP L+K +L    KK   L  
Sbjct:     7 FVIVGGG-LAGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFL--AGKKS--LSD 61

Query:   123 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 182
             F          QT +WY++  +++     V+S+D    T+    G  ++Y  L++ATG +
Sbjct:    62 FTI--------QTSDWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATG-S 112

Query:   183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 242
             A R P   G    GVHY+R   DA AL S L +          +IG+EVAA+A    +D 
Sbjct:   113 APRRPPIPGSDAAGVHYLRSYNDAVALNSVLVQGSSLAVVGAGWIGLEVAASARQRGVDV 172

Query:   243 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 302
             T++      L      ++ + +  L++  GV       ++ + A +DG+   +K+ DGST
Sbjct:   173 TVVETAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDGST 231

Query:   303 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
             + AD +++ +GAKP V   ++ GL    GG+ VD   RT  P I+A+GD+AA    +   
Sbjct:   232 VAADAVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGT 291

Query:   363 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVF----EYEG-SPRKVWWQFFG 417
               R EH  +A +        +L  +   Y  LPY ++  +    EY G +P      F G
Sbjct:   292 RVRTEHWANALKQPAVAAAGMLG-RPGEYAELPYLFTDQYDLGMEYVGHAPSCDRVVFRG 350

Query:   418 DNVG-ETIEIG-NFDPKI-----ATFWIDSGKLKGVLVESGSPEEFQLL 459
             +  G E +    + D ++        W     +KG L+ SG+P +   L
Sbjct:   351 NVAGREFLSFWLDGDSRVLAGMNVNVWDVVDDVKG-LIRSGNPVDVDRL 398

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 119/411 (28%), Positives = 188/411 (45%)

Query:    64 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
             V++G G A         + G  +G + ++  E   PY+RP L+K YL   + +  RL  F
Sbjct:     5 VVIGAGQAGASLVARLRKDGF-EGEITLIGAEPVPPYQRPPLSKAYLLG-EMEKERL--F 60

Query:   124 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 182
                         PE +Y E+ I +     V++ID   +T ++  G+++ Y  L + TG  
Sbjct:    61 ----------LRPESFYAEQNIALRLNARVSAIDPAAKT-VSLGGEVIPYDQLALTTGSE 109

Query:   183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 242
               R P  IGG L GVH +RD+AD DA+  S+ +  +       YIG+E AA      +  
Sbjct:   110 PRRLPAAIGGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGGYIGLEAAAVCAKRGVQV 169

Query:   243 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 302
             T++   + +LQR+  P  +  +  L+  +GV   +G  +  L  G+ GRV    L DGS 
Sbjct:   170 TLVEMADRILQRVAAPETSAYFRALHTGHGVDIREGVGLTRL-IGAQGRVTGAVLTDGSE 228

Query:   303 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
             +  D +V+G+G  P  +  E  GL     GI+ D Q RT  P I+A GD A+FP K    
Sbjct:   229 LPVDLVVVGVGIAPATALAEAAGLVLE-NGIRTDAQGRTSDPSIWAAGDCASFPYK--GG 285

Query:   363 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 421
               R+E V +A   A+   + +  A    Y   P+F+S   +Y+     V  Q  G N G 
Sbjct:   286 RIRLESVPNAIDQAETVAQNMQGAGKD-YVAQPWFWSD--QYD-----VKLQIAGLNTGY 337

Query:   422 ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 472
             + +     + +  +FW  +G     +     P  + +   L  S    D A
Sbjct:   338 DRVVTRPGEGQTVSFWYYTGDQLVAVDAMNDPRAYMVGKRLIDSGKTADPA 388

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|D5IGG6 fdr "Ferredoxin--NAD(P)(+) reductase fdr" [Sphingomonas sp. (taxid:28214)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 105/344 (30%), Positives = 160/344 (46%)

Query:    62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 121
             + VIVG G+     A    ++G A G + I+  E   PYERP L+K YL       A   
Sbjct:     7 DVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYL-------AAEK 58

Query:   122 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 181
             GF   +     R    W  ++ I M     V  +D  ++ +    G+ + YG L+   G 
Sbjct:    59 GFERIL----IRPASFW-NDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGDLVWCAGG 113

Query:   182 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLD 241
             +A R  +  G  L GVHY+R  AD DAL + L    K       YIG+E AA    +  +
Sbjct:   114 SARRL-DCTGHDLGGVHYVRTRADTDALAAELPGVSKVVIIGGGYIGLEAAAVMAKFGKN 172

Query:   242 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 301
              T+I   + +L R+    L++ +E+ ++  GV       +  L  G DGRV  V+L D  
Sbjct:   173 VTLIEALDRVLARVAGEPLSRFFEEKHRSRGVDVRLRTKVGCL-LGQDGRVTHVELNDAD 231

Query:   302 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF--PLKM 359
              I AD +++GIG  P +SP    G  +S  G+ VD   RT +P ++A+GD AA       
Sbjct:   232 PIPADLVIVGIGIIPAISPLVVAGAKAS-NGLLVDASGRTSIPHVYALGDCAAHVNSFAP 290

Query:   360 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 403
              D   R+E V +A   A    + +       Y  +P+F+S  ++
Sbjct:   291 NDIPIRLESVQNANDQAVVVARTICGTAAQ-YHAVPWFWSSQYD 333

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=ISS

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=ISS

GO:0046232 "carbazole catabolic process" evidence=IDA

GO:0050661 "NADP binding" evidence=ISS

GO:0051287 "NAD binding" evidence=ISS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

UNIPROTKB|P95034 Rv0688 "PUTATIVE FERREDOXIN REDUCTASE" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 106/340 (31%), Positives = 156/340 (45%)

Query:    64 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
             VIVGGG AA   A      G + GRL IVS E + PY+RP L+K  L       A  P  
Sbjct:    19 VIVGGGLAAARTAEQLRRAGYS-GRLTIVSDEVHLPYDRPPLSKEVLRSEVDDVALKPR- 76

Query:   124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 183
                          E+Y EK I +       S+D  +QT+    G +L Y  L++ATG   
Sbjct:    77 -------------EFYDEKDIALRLGSAAVSLDTGEQTVTLADGTVLGYDELVIATGLVP 123

Query:   184 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTT 243
              R P      L G+  +R   ++ AL      A+        +IG EVAA+  G  +D  
Sbjct:   124 RRIPSLPD--LDGIRVLRSFDESMALRKHASAARHAVVVGAGFIGCEVAASLRGLGVDVV 181

Query:   244 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 303
             ++ P+   L  +    + Q   +L++  GV    G ++   E    G V AV L DG+ +
Sbjct:   182 LVEPQPAPLASVLGEQIGQLVTRLHRDEGVDVRTGVTVA--EVRGKGHVDAVVLTDGTEL 239

Query:   304 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 363
              AD +V+GIG+ P     E  G+     G+  D   RT  P ++A+GDVA++   M    
Sbjct:   240 PADLVVVGIGSTPATEWLEGSGVEVD-NGVICDKAGRTSAPNVWALGDVASWRDPM-GHQ 297

Query:   364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 403
             ARVEH  +    A+  + A+L     T   +PYF+S  ++
Sbjct:   298 ARVEHWSNVADQARVVVPAMLGTDVPTGVVVPYFWSDQYD 337

GO:0005515 "protein binding" evidence=IPI

GO:0006124 "ferredoxin metabolic process" evidence=IDA

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

UNIPROTKB|Q9L4M8 alkT "Rubredoxin-NAD(+) reductase" [Pseudomonas putida (taxid:303)]

 Score = 332 (121.9 bits), Expect = 5.7e-30, P = 5.7e-30
 Identities = 101/326 (30%), Positives = 152/326 (46%)

Query:    64 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
             VIVG G A   AA    ++G   G + ++S+E+  PY+RP L+K +L     + A +P  
Sbjct:     4 VIVGAGTAGVNAAFWLRQYGYKGG-IRLLSRESVTPYQRPPLSKAFLTSETAESA-IP-- 59

Query:   124 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 182
                         PE +Y    I +     + SID+ ++ +    G+   Y  LI+ATG +
Sbjct:    60 ----------LKPESFYTNNNISISLNTQIVSIDVGRKVVAAKDGEEYAYEKLILATGAS 109

Query:   183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 242
             A R   + G  L GV Y+R + DA  L   L ++          IG+EVA+AAVG     
Sbjct:   110 ARRLTCE-GSELSGVCYLRSMEDAKNLRRKLVESASVVVLGGGVIGLEVASAAVGIGRRV 168

Query:   243 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 302
             T+I     ++ R+ TP+ A       +  GV F   A + +++ G +G V    LE G  
Sbjct:   169 TVIEAAPRVMARVVTPAAANLVRARLEAEGVGFKLNAKLTSIK-GRNGHVNQCVLESGEK 227

Query:   303 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
             I AD I++GIGA P +       L  S  G+ VD Q RT    I+AIGD A      +  
Sbjct:   228 IQADLIIVGIGAIPELELATEAALEVS-NGVVVDDQMRTSDTSIYAIGDCALARNLFFGT 286

Query:   363 TARVEHVDHARQSAQHCIKALLSAQT 388
               R+E + +A   AQ    ++    T
Sbjct:   287 MVRLETIHNAVTQAQIVASSICGTST 312

GO:0015046 "rubredoxin-NADP reductase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92947	MDARP_ARATH	1, ., 6, ., 5, ., 4	0.7959	0.9798	0.9878	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.979
3rd Layer	1.6.5	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	497
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-60
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	2e-45
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	1e-41
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	1e-34
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	8e-31
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	7e-28
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	6e-24
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	7e-24
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	2e-23
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	6e-23
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	2e-20
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	8e-19
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	4e-17
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	7e-17
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	8e-16
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	1e-15
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	1e-15
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	2e-15
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	3e-15
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	8e-15
TIGR02053	463	TIGR02053, MerA, mercuric reductase	1e-14
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	2e-14
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	5e-14
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	6e-13
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	7e-13
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	9e-13
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-12
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	4e-12
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	1e-11
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	1e-11
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	1e-11
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	6e-11
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	1e-10
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	3e-10
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	4e-10
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	6e-10
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	2e-09
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	4e-09
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	7e-09
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	7e-09
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	7e-09
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	1e-08
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	3e-08
PLN02507	499	PLN02507, PLN02507, glutathione reductase	6e-08
PLN02546	558	PLN02546, PLN02546, glutathione reductase	2e-07
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-07
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	3e-07
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	4e-07
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-06
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-06
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	3e-06
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	9e-06
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	1e-05
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	3e-05
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	6e-05
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	7e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-04
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	2e-04
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-04
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	3e-04
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	0.001
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.003
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.003
PRK00711	416	PRK00711, PRK00711, D-amino acid dehydrogenase sma	0.003
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.004

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  199 bits (509), Expect = 2e-60
 Identities = 95/298 (31%), Positives = 139/298 (46%), Gaps = 21/298 (7%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
           VI+GGG  AG AA   +       ++ ++ +E    Y R  L K  L  L+         
Sbjct: 3   VIIGGG-PAGLAAAIRL--ARLGLKVALIEREGGTCYNRGCLPKKLL--LEVAEGLELA- 56

Query: 124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATG 180
                  G     E YKE G+E++    V  ID  ++T++      G+ + Y  LI+ATG
Sbjct: 57  ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110

Query: 181 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 240
                    I G    V  +R V D+D ++  LE  K+VVVVGGGYIG+E+AAA      
Sbjct: 111 ARPRIPG--IPGV--EVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGK 166

Query: 241 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 300
           + T++   + LL R      A   E+L +   +       +  +    DG+V  VKL DG
Sbjct: 167 EVTVVERRDRLLARADDEISAALLEKLEKL-LLGVTVLLVVVVVVKVGDGKVVEVKLGDG 225

Query: 301 STIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
             +DAD +++ IG +P     E+ G+     G I VD   RT +PGI+A GDVA    
Sbjct: 226 EELDADVVLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  163 bits (415), Expect = 2e-45
 Identities = 94/348 (27%), Positives = 146/348 (41%), Gaps = 23/348 (6%)

Query: 63  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 122
            VIVGGG A   AA T     +A     ++ +E    Y R  L+      +      L  
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEIT-LIGREPKYSYYRCPLSLYVGGGI-ASLEDLRY 58

Query: 123 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 182
                        P + +  GI++     VTSID E + ++ + G++ +Y  L++ATG  
Sbjct: 59  P------------PRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEI-EYDYLVLATGAR 105

Query: 183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 242
               P        GV  +R   DA+AL    E  K VVVVG G IG+E A AA       
Sbjct: 106 PRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKV 162

Query: 243 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS 301
           T+I   + L  +L  P +A+   +L ++ GV+ + G  +  +E   +  V   V   DG 
Sbjct: 163 TLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222

Query: 302 TIDADTIVIGIGAKPTV--SPFERVGLNSSVGGIQVDGQFRT-RMPGIFAIGDVAAFPLK 358
            I AD ++IG G +P V  +     GL  + G + VD +  T + P ++A GDVA  P  
Sbjct: 223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAA 282

Query: 359 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEG 406
              +  R+     A  + +      ++        L    S V +   
Sbjct: 283 ETGKGGRIALWAIAVAAGRI-AAENIAGALRIPGLLGTVISDVGDLCA 329

Length = 415

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  152 bits (386), Expect = 1e-41
 Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)

Query: 60  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 119
            +  +IVGGG AA  AA +  + G   G L + S E + PYERP L+K  L     +  +
Sbjct: 3   EKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQ 61

Query: 120 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 179
           +                 W++E  + +     + ++  + + L+  +G+   +  L +AT
Sbjct: 62  V-------------LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIAT 108

Query: 180 GCTASRFP--EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 237
           G  A   P  + +G        +R   DA  L   L+  + VV+VG G IG+E+AA+A  
Sbjct: 109 GAAARPLPLLDALG---ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQ 165

Query: 238 WKLDTTIIFPENHLLQRLFTPSLAQRY-EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 296
            +   T+I     ++ R   P   QRY  Q +QQ GV+ +   +I   E   DG    + 
Sbjct: 166 RRCKVTVIELAATVMGRN-APPPVQRYLLQRHQQAGVRILLNNAI---EHVVDGEKVELT 221

Query: 297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 353
           L+ G T+ AD ++ GIG            L+++  GI +D   RT  P IFA GDVA
Sbjct: 222 LQSGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVA 277

Length = 396

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  137 bits (348), Expect = 1e-34
 Identities = 76/311 (24%), Positives = 132/311 (42%), Gaps = 39/311 (12%)

Query: 61  REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL 120
           ++ VI+G G A        +E       + +  +E    Y R  L+              
Sbjct: 4   QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS------------- 50

Query: 121 PGFHTCVGSGGER------QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 174
                 V +G +          +WY+E GI +   + V  ID   + + T++G+ + Y  
Sbjct: 51  ------VLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDK 104

Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 234
           LI+ATG      P   G  LPGV   R + D +A++      KK VV+GGG +G+E A  
Sbjct: 105 LIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARG 163

Query: 235 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 294
                ++ T++     L++R    +  +   +  +  G+K +   + +  E   + +V  
Sbjct: 164 LKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTE--EIVGEDKVEG 221

Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG-----GIQVDGQFRTRMPGIFAI 349
           V+  DG+ I AD +V+ +G +P         L    G     GI V+   +T  P I+A+
Sbjct: 222 VRFADGTEIPADLVVMAVGIRP------NDELAKEAGLAVNRGIVVNDYMQTSDPDIYAV 275

Query: 350 GDVAAFPLKMY 360
           G+ A    K+Y
Sbjct: 276 GECAEHRGKVY 286

Length = 793

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  126 bits (318), Expect = 8e-31
 Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 25/295 (8%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
           V+VG G A        ++       + I  +E +  Y R  L+       D     L   
Sbjct: 2   VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61

Query: 124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 183
                        +WY++ GI +   + V  ID +++ +IT++G+ L Y  LI+ATG   
Sbjct: 62  -------------DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYP 108

Query: 184 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 243
              P   G    GV+  R + D DA+++  ++ KK  V+GGG +G+E A       +D +
Sbjct: 109 FILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVS 167

Query: 244 IIFPENHLLQRLFTPSLAQRYEQLYQ----QNGVKFVKGASIKNLEAGSDGRVAAVKLED 299
           +I    H    L    L Q   +L Q    Q G+ F+       +E     +   ++ +D
Sbjct: 168 VI----HHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEK--DTVEIVGATKADRIRFKD 221

Query: 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           GS+++AD IV+  G +P        G+  +  GI V+   +T  P I+A+G+ A 
Sbjct: 222 GSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAE 275

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score =  115 bits (289), Expect = 7e-28
 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 14/229 (6%)

Query: 134 QTPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFP 187
            TPE + K++GI++     V  ++ E+QT++     TN      Y  LI++ G +    P
Sbjct: 48  YTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-P 106

Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 245
              G  L  V  +R++ D DA+   ++  K + VV++GGGYIG+E+A A      + T+I
Sbjct: 107 NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLI 166

Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
                +L +LF   + Q  E+  +++ +       + ++E    G         G    A
Sbjct: 167 HRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE----GEERVKVFTSGGVYQA 222

Query: 306 DTIVIGIGAKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDVA 353
           D +++  G KP     +  GL     G I V+ +F+T +P I+A GDVA
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  103 bits (259), Expect = 6e-24
 Identities = 72/331 (21%), Positives = 119/331 (35%), Gaps = 71/331 (21%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALTKGYLFPLDKKPARLP 121
           VI+GGG     AA+        D  + +V +  Y  +      +  G    L +    +P
Sbjct: 7   VILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFTPLLYEVATG---TLSESEIAIP 62

Query: 122 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 181
                             ++ G     Q  VT ID + + +       + Y  L+VA G 
Sbjct: 63  -------------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGS 109

Query: 182 TASRFPEKIGGYLPGV----HYIRDVADADA----LISSLEKAKK---------VVVVGG 224
             + F       +PG       ++ + DA      L+ + EKA +         +V+VGG
Sbjct: 110 ETNYFG------IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGG 163

Query: 225 GYIGMEVAAAAVGWKLDTTIIFPEN------HLLQRL------FTPSLAQRYEQLYQQNG 272
           G  G+E+A             F  +       L++        F P L++  E+  ++ G
Sbjct: 164 GPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223

Query: 273 VKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKP-----TVSPFERVGL 326
           V+ + G  +  +          V L+DG   I ADT+V   G +       +S  E    
Sbjct: 224 VEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLE---- 273

Query: 327 NSSVGGIQVDGQFR-TRMPGIFAIGDVAAFP 356
               G + V+   +    P IFA GD AA  
Sbjct: 274 TDRRGRLVVNPTLQVPGHPDIFAAGDCAAVI 304

Length = 405

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  103 bits (260), Expect = 7e-24
 Identities = 86/328 (26%), Positives = 140/328 (42%), Gaps = 53/328 (16%)

Query: 64  VIVGGGNAAGY-AARTFVEHGM------ADGRL--------CIVSK------EAYAPYER 102
           V++G G  AGY AA    + G+         RL        CI SK      E       
Sbjct: 8   VVIGAG-PAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARH 66

Query: 103 PALTKGYLFPLDKKP-----ARLPGFHTCVGSGGERQTPEWYKEKGIEMIY-----QDPV 152
            A   G    + K       AR       +  G E       K+ G+++I       DP 
Sbjct: 67  AAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEG----LLKKNGVDVIRGEARFVDP- 121

Query: 153 TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS 212
            ++++  +   T +       ++I+ATG +  R P   G  + G   +    D+   +  
Sbjct: 122 HTVEVTGEDKETITAD-----NIIIATG-SRPRIPPGPG--IDGARIL----DSSDALFL 169

Query: 213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 272
           LE  K +V+VGGGYIG+E A+         T++   + +L     P +++   +  ++ G
Sbjct: 170 LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGG 228

Query: 273 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SS 329
           VK +    +  +E   DG +  ++  +G TI+AD +++ IG KP       E  G+    
Sbjct: 229 VKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDD 288

Query: 330 VGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
            G I+VD Q  T +PGI+AIGDV   P+
Sbjct: 289 RGFIKVDDQMTTNVPGIYAIGDVIGGPM 316

Length = 454

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score =  102 bits (255), Expect = 2e-23
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEK 189
           TPE + + GI++  +  V  +D + +T+      T S     Y  L++ATG      P  
Sbjct: 62  TPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPI 120

Query: 190 IGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 247
               L  V+ ++ + D  AL   L  E+ K +V++G G+IG+E   AA     +  II  
Sbjct: 121 KNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQL 180

Query: 248 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 307
           E+ +L   F   +    E+  ++NGV+      +K+L    + +V  V   D    +AD 
Sbjct: 181 EDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVV-TDKGEYEADV 237

Query: 308 IVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVA 353
           +++  G KP     E  GL +   G I VD    T +  I+A GD A
Sbjct: 238 VIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA 284

Length = 444

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  101 bits (253), Expect = 6e-23
 Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 10/197 (5%)

Query: 164 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 223
            N  + L+  ++I+ATG      P    G       +  V  +   ++  E  + +V++G
Sbjct: 124 ENGEETLEAKNIIIATGSRPRSLP----GPFDFDGKV--VITSTGALNLEEVPESLVIIG 177

Query: 224 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 283
           GG IG+E A+         T+I   + +L       +++  ++  ++ GVK +    +  
Sbjct: 178 GGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTA 236

Query: 284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 340
           +E   D      K  +  T+  + +++ +G KP       E++G+     G I VD   R
Sbjct: 237 VEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMR 296

Query: 341 TRMPGIFAIGDVAAFPL 357
           T +PGI+AIGDV   P+
Sbjct: 297 TNVPGIYAIGDVIGGPM 313

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 144 IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 203
           + +     VT ID E Q + +  G   +Y  L++ATG +A   P      +  ++  ++ 
Sbjct: 73  LRLFPHTWVTDIDAEAQVVKSQ-GNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEY 131

Query: 204 ADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 261
             A+  +     A++V+VVGGG IG E+A      G  +  T++     LL  L  P ++
Sbjct: 132 RAAETQLRD---AQRVLVVGGGLIGTELAMDLCRAGKAV--TLVDNAASLLASLMPPEVS 186

Query: 262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 321
            R +    + GV  +  + ++ LE    G      L+ G +I+ D ++   G +P  +  
Sbjct: 187 SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALA 244

Query: 322 ERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVA 353
            R GL  +V  GI VD   +T  P I+A+GD A
Sbjct: 245 RRAGL--AVNRGIVVDSYLQTSAPDIYALGDCA 275

Length = 377

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 88.3 bits (220), Expect = 8e-19
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           K+V VVG GYI +E A    G   +T +         R F P + +   +  ++ G++  
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFV-RGDAPLRGFDPDIRETLVEEMEKKGIRLH 226

Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 332
             A  K +E  +DG +  + LEDG T+  D ++  IG +P       E  G  LN   G 
Sbjct: 227 TNAVPKAVEKNADGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEK-GY 284

Query: 333 IQVDGQFRTRMPGIFAIGDV 352
           I VD    T +PGI+A+GDV
Sbjct: 285 IIVDEYQNTNVPGIYAVGDV 304

Length = 450

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 75/322 (23%), Positives = 116/322 (36%), Gaps = 75/322 (23%)

Query: 64  VIVGGG----NAAGYAAR------TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 113
           +I+GGG     AA YAAR        +E G   G+L            +    + Y    
Sbjct: 7   IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL-----------TKTTDVENY---- 51

Query: 114 DKKPARLPGFHTCVGSGGERQTPEWYKEK--------GIEMIYQDPVTSIDIEKQT-LIT 164
                  PGF                 E+        G+E++  D V  +++E     + 
Sbjct: 52  -------PGFP-------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVK 96

Query: 165 NSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GVHYIRDVADADALISSLEKAKKVV 220
                 +  ++I+ATG  A      + G       GV Y    A  D       K K VV
Sbjct: 97  TDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSY---CATCDGF----FKGKDVV 147

Query: 221 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 280
           V+GGG   +E A          T++   +      F        E+L +   ++ +    
Sbjct: 148 VIGGGDSAVEEALYLSKIAKKVTLVHRRDE-----FRAEEILV-ERLKKNVKIEVLTNTV 201

Query: 281 IKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD 336
           +K +  G D  V  V L++       +  D + I IG  P     + +G+    G I VD
Sbjct: 202 VKEIL-GDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVD 258

Query: 337 GQFRTRMPGIFAIGDVAAFPLK 358
            +  T +PGIFA GDVA    +
Sbjct: 259 EEMETSVPGIFAAGDVADKNGR 280

Length = 305

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 82.6 bits (205), Expect = 7e-17
 Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 14/184 (7%)

Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVAA 233
           L++ATG   SR P ++ G      Y+  ++  +AL  SLE   K +V+VGGG IG+E A+
Sbjct: 146 LLIATG---SR-PVELPGLPFDGEYV--ISSDEAL--SLETLPKSLVIVGGGVIGLEWAS 197

Query: 234 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 293
               + ++ T++   + +L       L++   +L ++ GV+ V GA +  L    DG V 
Sbjct: 198 MLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVL 256

Query: 294 AVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAI 349
            V   +G   T++AD +++ +G +P       E   ++   G IQ+D   +T+   I+AI
Sbjct: 257 IVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAI 316

Query: 350 GDVA 353
           GDV 
Sbjct: 317 GDVI 320

Length = 472

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 79.1 bits (195), Expect = 8e-16
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 135 TPEWYKE-KGIEMIYQDPVTSIDIEKQTL-----ITNSGKLLKYGSLIVATGCTASRFPE 188
           TPE + + K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122

Query: 189 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 246
           +          +R++ D DA+   ++  +  K +VVG GYI +EV        L  T+I 
Sbjct: 123 ES----DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIH 178

Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
             + +  +L    + Q       +  + +     I  +    +G    V  + G     D
Sbjct: 179 RSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAI----NGN--EVTFKSGKVEHYD 231

Query: 307 TIVIGIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 353
            I+ G+G  P     E   + L+   G I V+ +F T +P I+AIGD+ 
Sbjct: 232 MIIEGVGTHPNSKFIESSNIKLDDK-GFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 78.6 bits (195), Expect = 1e-15
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 27/204 (13%)

Query: 164 TNSGKLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADAD-ALISSLEKA-KKVV 220
            +  +     ++I+ATG      P  +I G        R +  +D AL  +L++  K +V
Sbjct: 127 EDGEQTYTAKNIILATGSRPRELPGIEIDG--------RVIWTSDEAL--NLDEVPKSLV 176

Query: 221 VVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 277
           V+GGGYIG+E A+A   +     + TI+     +L       +++  E+  ++ G+K   
Sbjct: 177 VIGGGYIGVEFASA---YASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKT 232

Query: 278 GASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVGG 332
           GA  K +E   DG    V LEDG    T++AD +++ +G +P       E +G+ +  G 
Sbjct: 233 GAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGF 290

Query: 333 IQVDGQFRTRMPGIFAIGDVAAFP 356
           I+VD Q RT +P I+AIGD+   P
Sbjct: 291 IEVDEQLRTNVPNIYAIGDIVGGP 314

Length = 462

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 277
           +VVVVGGGYIG+E A+A        T++   + LL R F   +A+  ++  ++NG++ + 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59

Query: 278 GASIKNLEAGSDGRVAAVKLEDG 300
             +++ +E   DG V  +K  DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 78.3 bits (194), Expect = 2e-15
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 22/196 (11%)

Query: 166 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-----DVADADALISSLEKAKKVV 220
            G+ L+   + + TG  A+  P      +PG+  +       +   D L   L      V
Sbjct: 128 GGETLRAKRIFINTGARAAI-PP-----IPGLDEVGYLTNETIFSLDELPEHL------V 175

Query: 221 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 280
           ++GGGYIG+E A     +  + T+I     LL R     +A    ++ ++ G+     A 
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAE 234

Query: 281 IKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVD 336
              +E   DG    +    G+  I    I++ +G  P       E  G+   + G I+VD
Sbjct: 235 CIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD 294

Query: 337 GQFRTRMPGIFAIGDV 352
            Q RT  PGI+A GD 
Sbjct: 295 DQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 78.6 bits (194), Expect = 3e-15
 Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 26/238 (10%)

Query: 136 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 195
             +Y++ GI+++  +   +I+ +++ + +++G+ + Y  LI+ATG      P K G    
Sbjct: 66  EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQ 124

Query: 196 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 255
                R + D +A+ +   ++K+  VVGGG +G+E A A     ++T +I          
Sbjct: 125 DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVI---------E 175

Query: 256 FTPSLAQRYEQLYQQNGVKF--------VKGASIKN----LEAGSDGRVAAVKLEDGSTI 303
           F P L    EQL Q  G +         V+  + KN    ++ G + R   ++  DGS +
Sbjct: 176 FAPMLMA--EQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEAR-KTMRFADGSEL 232

Query: 304 DADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 360
           + D IV   G +P      + GL  +  GGI ++   +T  P I+AIG+ A++  +++
Sbjct: 233 EVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290

Length = 847

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 76.4 bits (188), Expect = 8e-15
 Identities = 80/321 (24%), Positives = 138/321 (42%), Gaps = 50/321 (15%)

Query: 62  EFVIVGGGN--------AAGYAARTFVEHGMADGRLCI----VSKE----AYAPYERPAL 105
           +++++GGG+        AA + A+  +      G  C+    V K+    A    ER   
Sbjct: 4   DYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHD 63

Query: 106 TKGYLFPL-DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE------ 158
              Y F    +     P           ++  + Y ++ +  IYQ  +    ++      
Sbjct: 64  AADYGFYQNLENTFNWPEL---------KEKRDAYVDR-LNGIYQKNLEKNKVDVIFGHA 113

Query: 159 ---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 215
              K   +  +G+      +++ATG   S FPE I G   G        D+D   +  E 
Sbjct: 114 RFTKDGTVEVNGRDYTAPHILIATGGKPS-FPENIPGAELGT-------DSDGFFALEEL 165

Query: 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 275
            K+VV+VG GYI +E+A    G   +T ++     +L R F   +++   + Y++ G+  
Sbjct: 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINV 224

Query: 276 VKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLN-SSVG 331
            K +    +E   +G++  +  EDG +I D D ++  IG KP       E VG+  +  G
Sbjct: 225 HKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKG 283

Query: 332 GIQVDGQFRTRMPGIFAIGDV 352
            I VD    T +PGI+A+GDV
Sbjct: 284 QIIVDEYQNTNVPGIYALGDV 304

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 12/181 (6%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 235
           ++ATG   +  P      +PG+        ++  ++     + + V+GGG IG+E+A A 
Sbjct: 133 LIATGARPAIPP------IPGLKEA-GYLTSEEALALDRIPESLAVIGGGAIGVELAQAF 185

Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
                + TI+   + LL R   P ++   E+   + G++ V  A +K +     G++  V
Sbjct: 186 ARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV 244

Query: 296 KLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGD 351
           +   G   ++AD +++  G +P       E+ G+     GGI VD   RT  PGI+A GD
Sbjct: 245 EKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGD 304

Query: 352 V 352
           V
Sbjct: 305 V 305

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 28/200 (14%)

Query: 167 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 226
            + + + + I+ATG +           LPG     +V   +  I S E  K +V+ G G 
Sbjct: 131 TETVTFDNAIIATGSSTR--------LLPGTSLSENVVTYEEQILSRELPKSIVIAGAGA 182

Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------TPSLAQRYEQLYQQNGVKFVKGA 279
           IGME A     + +D TI+      L R         +  +A++Y++L    GVK + G 
Sbjct: 183 IGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKL----GVKILTGT 234

Query: 280 SIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQ 334
            +++++         V  +DG    ++AD ++  IG  P V  +  E+ G+  +  G I 
Sbjct: 235 KVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIA 294

Query: 335 VDGQFRTRMPGIFAIGDVAA 354
           +D   RT +P I+AIGDV A
Sbjct: 295 IDDYMRTNVPHIYAIGDVTA 314

Length = 466

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 73.9 bits (181), Expect = 5e-14
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 15/204 (7%)

Query: 150 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 209
           D VT +      L  + G++++  ++++A G      P       P V        +D  
Sbjct: 183 DEVTIVSAGVSQL--DDGQVIEGKNILIAVGNK----PI-----FPDVKGKEFTISSDDF 231

Query: 210 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 269
              +++AK++ + G GYI +E+         ++  IF   + L R F  ++    E   +
Sbjct: 232 FK-IKEAKRIGIAGSGYIAVELINVVNRLGAESY-IFARGNRLLRKFDETIINELENDMK 289

Query: 270 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-- 327
           +N +  +  A+++ +E   +  +     +       D ++  +G  P         LN  
Sbjct: 290 KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK 349

Query: 328 SSVGGIQVDGQFRTRMPGIFAIGD 351
           +  G I+VD   RT +  I+A+GD
Sbjct: 350 TPKGYIKVDDNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 70.2 bits (173), Expect = 6e-13
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 34/199 (17%)

Query: 174 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYI 227
           ++++ATG   SR P      +PGV     +   D L++S     L+K  K + V+GGG I
Sbjct: 133 NIVIATG---SRVPP-----IPGV----WLILGDRLLTSDDAFELDKLPKSLAVIGGGVI 180

Query: 228 GMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 285
           G+E+  A   +G  +  T+    + +L  L  P ++++ +++  +   K   GA + ++E
Sbjct: 181 GLELGQALSRLG--VKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236

Query: 286 AGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQ 338
              D +V  ++    + TI+AD +++  G +P     + +GL N+ +     G   VD  
Sbjct: 237 KSGDEKVEELEKGGKTETIEADYVLVATGRRPNT---DGLGLENTGIELDERGRPVVDEH 293

Query: 339 FRTRMPGIFAIGDVAAFPL 357
            +T +PGI+A GDV   P 
Sbjct: 294 TQTSVPGIYAAGDVNGKPP 312

Length = 460

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 70.2 bits (173), Expect = 7e-13
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 16/162 (9%)

Query: 203 VADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRL---FT 257
           + D+D+++S     + +++ G G IG E A+  AA+G K   T+I   + LL  L    +
Sbjct: 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVK--VTLINTRDRLLSFLDDEIS 219

Query: 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317
            +L+         +GV       ++ +E G DG +  V L+ G  I AD ++   G    
Sbjct: 220 DALSYHLRD----SGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGN 273

Query: 318 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
                 E  GL   S G ++V+  ++T +P I+A+GDV  FP
Sbjct: 274 TDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 23/187 (12%)

Query: 174 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 233
           ++++ TG  ++  P      +PG+   + V D+  + S     +++ ++GGG IG+E A 
Sbjct: 121 TIVINTGAVSNVLP------IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174

Query: 234 --AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 291
               +G K+  T++   + +L R   PS+A   +Q  +++G+ F+  A    ++   DG 
Sbjct: 175 LYNKLGSKV--TVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN--DGD 229

Query: 292 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQFRTRMPG 345
              V  ED  T   D ++   G KP   P   +GL N+ +     G I+VD   +T +PG
Sbjct: 230 QVLVVTEDE-TYRFDALLYATGRKPNTEP---LGLENTDIELTERGAIKVDDYCQTSVPG 285

Query: 346 IFAIGDV 352
           +FA+GDV
Sbjct: 286 VFAVGDV 292

Length = 438

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           K +++ GGGYI +E A    G  + TT+I+    +L+  F   + +      ++ G++ +
Sbjct: 167 KSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIRIL 225

Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGI 333
              SI ++    DGR+ A  L     I AD ++   G  P  +    E  G+  + +G I
Sbjct: 226 PEDSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAI 284

Query: 334 QVDGQFRTRMPGIFAIGDV 352
            VD   RT  P I+A+GDV
Sbjct: 285 AVDEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 68.0 bits (167), Expect = 4e-12
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 42/222 (18%)

Query: 191 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV--GWKLDTTII--F 246
            G L  V ++R V + +         K+VVV+GGG   M+ A  A   G + + TI+   
Sbjct: 246 AGVLDAVDFLRAVGEGEPPFLG----KRVVVIGGGNTAMDAARTARRLGAE-EVTIVYRR 300

Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--------VKLE 298
               +      P+  +  E+   + GV+     +   +E   +G               E
Sbjct: 301 TREDM------PAHDEEIEEA-LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDE 353

Query: 299 DG---------STIDADTIVIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFR-TRMPGIF 347
           DG          T++AD +V+ IG     +  E V G+    G +QVD  F  T  PG+F
Sbjct: 354 DGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVF 413

Query: 348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 389
           A GD+   P     RT     + H +++A++ I A L  + +
Sbjct: 414 AGGDMVPGP-----RTVTTA-IGHGKKAARN-IDAFLGGEPY 448

Length = 564

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 214 EKAKKVVVVGGGYIGMEVAA-----AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 268
           E  ++V+ VGGG+I +E A         G K+        N+++ R F  +L +   +  
Sbjct: 185 EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCY---RNNMILRGFDSTLRKELTKQL 241

Query: 269 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE--RVGL 326
           + NG+  +   +   +   +DG    V  E G T+D D +++ IG  P     +  +VG+
Sbjct: 242 RANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV 300

Query: 327 N-SSVGGIQVDGQFRTRMPGIFAIGDV 352
             +  G IQVD   RT +P I+AIGDV
Sbjct: 301 ELTKKGAIQVDEFSRTNVPNIYAIGDV 327

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 21/191 (10%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHY-IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 234
           I+ATG            +LPGV +  + + D    ++  E  KK+ V+G G IG+E+ + 
Sbjct: 150 IIATGSEPR--------HLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSV 201

Query: 235 AVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 291
              W+    + TI+      L       +A+   + + + G+    G  I  ++ G  G 
Sbjct: 202 ---WRRLGAEVTILEALPAFLA-AADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGV 257

Query: 292 VAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGI 346
             A    DG   T++ D +++ IG  P       E VGL     G I VD   RT +P +
Sbjct: 258 SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNV 317

Query: 347 FAIGDVAAFPL 357
           +AIGDV   P+
Sbjct: 318 YAIGDVVRGPM 328

Length = 475

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 65/249 (26%), Positives = 98/249 (39%), Gaps = 51/249 (20%)

Query: 171 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKAKKVVVVGGGY 226
            Y ++ + TG    RF    G  L GV+    ++  V  A A    L   K+VVV+GGG 
Sbjct: 225 GYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD-YDLPVGKRVVVIGGGN 283

Query: 227 IGMEVAAAAVGWKL---DTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIK 282
             M+ A  A   +L     TI++      +R      A   E  + ++ GV+F   A+  
Sbjct: 284 TAMDAARTAK--RLGAESVTIVY------RRGREEMPASEEEVEHAKEEGVEFEWLAAPV 335

Query: 283 NLEAGSDGRVAAVKLE-----------------DGS--TIDADTIVIGIGAKP---TVSP 320
            +  G +GRV  V+                   +GS  T+ AD ++  IG  P    +S 
Sbjct: 336 EIL-GDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILST 394

Query: 321 FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR--VEHVDHARQSAQH 378
              + LN     I  D   RT +PG+FA GD+           A   V  V   + +A+ 
Sbjct: 395 TPGLELNRWGTIIADDETGRTSLPGVFAGGDIV--------TGAATVVWAVGDGKDAAEA 446

Query: 379 CIKALLSAQ 387
            I   L   
Sbjct: 447 -IHEYLEGA 454

Length = 457

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 69/323 (21%), Positives = 115/323 (35%), Gaps = 71/323 (21%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
           V++GGG+      R +    +   R+ +++  +  PY       G L      P  + G 
Sbjct: 3   VLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS------GML------PGMIAGH 50

Query: 124 HT-----------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 172
           ++              +G                      T ID +++ ++  +   L Y
Sbjct: 51  YSLDEIRIDLRRLARQAGAR--------------FVIAEATGIDPDRRKVLLANRPPLSY 96

Query: 173 GSLIVATGCT----------ASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAKKVVV 221
             L +  G T              P K I  +L     + + ADA          K++ V
Sbjct: 97  DVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP------PGTKRLAV 150

Query: 222 VGGGYIGMEVA-AAAVGWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           VGGG  G+E+A A               +     LL   F   + +   +L  + G++  
Sbjct: 151 VGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPG-FPAKVRRLVLRLLARRGIEVH 209

Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP-FERVGLN-SSVGGIQ 334
           +GA +     G DG +    L DG T+ AD I+   GA+    P     GL     G ++
Sbjct: 210 EGAPV---TRGPDGALI---LADGRTLPADAILWATGARA--PPWLAESGLPLDEDGFLR 261

Query: 335 VDGQFRTR-MPGIFAIGDVAAFP 356
           VD   ++   P +FA GD A   
Sbjct: 262 VDPTLQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 85/326 (26%), Positives = 134/326 (41%), Gaps = 80/326 (24%)

Query: 64  VIVGGG----NAAGYAART-----FVEHGMADGRLCIVSK-EAYAPYERPALTKGYLFPL 113
           +I+G G     AA YAAR       +E G   G+L   ++ E Y                
Sbjct: 3   IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENY---------------- 46

Query: 114 DKKPARLPGFHTCVGSGGERQTPEWYKEK---GIEMIYQDPVTSIDIEKQT--LITNSGK 168
                  PGF   + SG E    +  ++    G E+IY++ V  +D   +   + T  GK
Sbjct: 47  -------PGFPEGI-SGPELME-KMKEQAVKFGAEIIYEE-VIKVDKSGRPFKVYTGDGK 96

Query: 169 LLKYGSLIVATGCTASRFPEKIGGYLP--------GVHYIRDVADADALISSLEKAKKVV 220
                ++I+ATG  AS    K+G  +P        GV Y    A  D       K K+V 
Sbjct: 97  EYTAKAVIIATG--AS--ARKLG--IPGEDEFWGRGVSY---CATCDG---PFFKNKEVA 144

Query: 221 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL-AQRY--EQLYQQNGVKFVK 277
           VVGGG   +E A       L  T I  +  L+ R       A++   ++L +   ++F+ 
Sbjct: 145 VVGGGDSAIEEA-------LYLTRIAKKVTLVHR--RDKFRAEKILLDRLKKNPKIEFLW 195

Query: 278 GASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTVSPFERVGLNSSVGG 332
            +++K  E   D +V  VK+++        ++ D + I IG +P     + +      G 
Sbjct: 196 NSTVK--EIVGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLLELDENGY 253

Query: 333 IQVDGQFRTRMPGIFAIGDVAAFPLK 358
           I  D   RT +PG+FA GDV     +
Sbjct: 254 IVTDEGMRTSVPGVFAAGDVRDKGYR 279

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK-KVVVVGGGYIGMEVAA 233
           +++ATG   S  PE +    PG       +D    I SL K   K ++VG  YIG+E A 
Sbjct: 148 ILIATGGRPS-IPEDV----PGAKEYSITSDD---IFSLSKDPGKTLIVGASYIGLETAG 199

Query: 234 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 293
                  D T+      +  R F    +++  +  ++ G  F++G    N+E   D    
Sbjct: 200 FLNELGFDVTVAV--RSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK--I 255

Query: 294 AVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 351
            V   DG+T   DT++   G KP +       +G++ +     +     T +P IFA+GD
Sbjct: 256 KVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNIPNIFAVGD 315

Query: 352 VA 353
           V 
Sbjct: 316 VV 317

Length = 499

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 41/221 (18%)

Query: 171 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKA-----KKVVV 221
           KY ++++ATG   SR     G  LPGV+    Y+  +  A       EK      KKVVV
Sbjct: 118 KYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVV 177

Query: 222 VGGGYIGMEVA--AAAVGWKLDT-----TI------IFPENHLLQR------LFTPSLAQ 262
           VG G   ++ A  A  +G +        TI       +    L+ R      L TP    
Sbjct: 178 VGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTP---- 233

Query: 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSP 320
              ++  +  V+ V+ A ++  E    GR   V +  GS   ++ADT+V  IG  PT  P
Sbjct: 234 --VRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIP-GSEFVLEADTVVFAIGEIPT-PP 289

Query: 321 FERVGL---NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
           F +  L    +  G I VD +  T   G+FA GDV   P K
Sbjct: 290 FAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSK 330

Length = 352

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 15/184 (8%)

Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 234
            ++ATG    R+P   G     +        +D L S      K +VVG  Y+ +E A  
Sbjct: 147 FLIATGERP-RYPGIPGAKELCI-------TSDDLFSLPYCPGKTLVVGASYVALECAGF 198

Query: 235 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVA 293
             G  LD T++     +L R F    A +  +  +++GVKF +      +E   +   V 
Sbjct: 199 LAGIGLDVTVMV--RSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE 256

Query: 294 AVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGL--NSSVGGIQVDGQFRTRMPGIFAI 349
                +G   + DT+++ IG          E VG+  N   G I  D + +T +P I+A+
Sbjct: 257 FTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAV 316

Query: 350 GDVA 353
           GD+ 
Sbjct: 317 GDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 34/235 (14%)

Query: 161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 220
           TL T  G+ +    +++A G +    P  I       H    +     L  SL      V
Sbjct: 118 TLRTGDGEEITADQVVIAAG-SRPVIPPVIADSGVRYHTSDTIMRLPELPESL------V 170

Query: 221 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------FTPSLAQRYEQLYQQNGV 273
           +VGGG+I  E A       +  T++     LL+ L       FT   ++R++    +N  
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRN-- 228

Query: 274 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVG 331
             V G S        DG    ++L+DGST++AD +++  G  P          G++    
Sbjct: 229 --VVGVS-------QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDED 279

Query: 332 G-IQVDGQFRTRMPGIFAIGDVAA-FPLK-MYDRTAR-VEH---VDHARQSAQHC 379
           G + VD   RT   G+FA+GDV++ + LK + +  AR V+H         ++ H 
Sbjct: 280 GRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHR 334

Length = 451

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 49/219 (22%)

Query: 171 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--------------SSLEKA 216
           +Y ++ + TG    +        +PG       +  D L               + +   
Sbjct: 218 QYDAVFIGTGAGLPKL-----MNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG 272

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ--QNGVK 274
           K VVV+GGG   ++ A  A+    +   ++       R     +  R E++    + GVK
Sbjct: 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLY-------RRTREDMTARVEEIAHAEEEGVK 325

Query: 275 F----------------VKGASIKNLEAG----SDGRVAAVKLEDGSTIDADTIVIGIGA 314
           F                V+    + ++      S  R      +    ++AD +++ IG 
Sbjct: 326 FHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385

Query: 315 KPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDV 352
                  E   L +S  G I VD   RT +PG+FA GD+
Sbjct: 386 GSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 21/177 (11%)

Query: 194 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPEN 249
           LPGV    + + D+   +S  E  K +VV+G G IG+E+ +    W+      T++    
Sbjct: 151 LPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSV---WRRLGAQVTVV---- 203

Query: 250 HLLQRLFTPSL----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---ST 302
             L R+  P      A+  ++   + G+KF  G+ +    AG+DG    ++   G    T
Sbjct: 204 EYLDRI-CPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAET 262

Query: 303 IDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
           + AD +++ IG +P       E VGL +   G+  +   RT +PG++ IGDV + P+
Sbjct: 263 LQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM 319

Length = 466

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 212 SLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 270
           SL      +++VGGG IG E A+         TI+     LL       +A    +  + 
Sbjct: 165 SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLEN 223

Query: 271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLN 327
           +GVK   GA++K L   S  + A  + E     ++A+ +++ +G KP V     E+ G+ 
Sbjct: 224 DGVKIFTGAALKGLN--SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQ 281

Query: 328 SSVGGIQVDGQFRTRMPGIFAIGDVA 353
            S  GI V+   +T +P I+A GDV 
Sbjct: 282 FSNKGISVNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 15/202 (7%)

Query: 161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 220
           TL T  G+ +    +++A G +    P  I     GV Y  +    + ++   E  + +V
Sbjct: 121 TLRTGDGEEITGDQIVIAAG-SRPYIPPAIAD--SGVRYHTN----EDIMRLPELPESLV 173

Query: 221 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 280
           +VGGGYI  E A          TI+     LL+ L    ++ R+ ++ ++   K+     
Sbjct: 174 IVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL-DEDISDRFTEIAKK---KWDIRLG 229

Query: 281 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDG 337
                   DG    + L+DGST+ AD +++  G  P       E  G+     G I+VD 
Sbjct: 230 RNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE 289

Query: 338 QFRTRMPGIFAIGDVAA-FPLK 358
             RT   G++A+GDV++ + LK
Sbjct: 290 YGRTSARGVWALGDVSSPYQLK 311

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 194 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
           +PG+     V D+  L++  E    + ++GGGYIG+E A+    +    TI+   +  L 
Sbjct: 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195

Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313
           R     +A     + +  GV  +  A ++ + +  + +V  V  E       D ++I  G
Sbjct: 196 RE-DRDIADNIATILRDQGVDIILNAHVERI-SHHENQV-QVHSEHAQLA-VDALLIASG 251

Query: 314 AKPTVSPFERVGLNSSV---GGIQVDGQFRTRMPGIFAIGDV 352
            +P  +         +V   G I VD    T    I+A+GDV
Sbjct: 252 RQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 44/228 (19%)

Query: 152 VTSIDIEKQ----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG-VHYI-RDVAD 205
             +  IE +     +   SG++LK  S+IVATG   +R+  K+G  +PG   YI + VA 
Sbjct: 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATG---ARW-RKLG--VPGEKEYIGKGVAY 341

Query: 206 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265
                    K K V V+GGG  G+E A       +D   I     +L+  F   L  + +
Sbjct: 342 CPHCDGPFFKGKDVAVIGGGNSGIEAA-------IDLAGIVRHVTVLE--FADEL--KAD 390

Query: 266 QLYQQNGVKFVKGASIKNLE----------AGSDGRVAAVKLEDGST-----IDADTIVI 310
           ++ Q       K  S+ N++           G   +V  ++ +D ++     +D D + +
Sbjct: 391 KVLQD------KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444

Query: 311 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
            IG  P     +     +  G I +D + RT +PGIFA GDV   P K
Sbjct: 445 QIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK 492

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 23/194 (11%)

Query: 167 GKLLKYGS--LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVG 223
           G  L+Y +  +++ATG  A R        +PG    +++A  +D  +S  E  K+ VV+G
Sbjct: 161 GTKLRYTAKHILIATGSRAQRPN------IPG----KELAITSDEALSLEELPKRAVVLG 210

Query: 224 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
           GGYI +E A+    +G  +D   +F    L  R F   +     +  +  G+      ++
Sbjct: 211 GGYIAVEFASIWRGMGATVD---LFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNL 267

Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGIQVDGQ 338
             L     G    V  + G    AD ++   G  P       E VG+     G ++VD  
Sbjct: 268 TQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEY 325

Query: 339 FRTRMPGIFAIGDV 352
            RT +P I+AIGDV
Sbjct: 326 SRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 167 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 226
           GKL    ++++A G      P+     +PG+ +     D+DA +    K +K+ +VGGGY
Sbjct: 212 GKLYTARNILIAVGGRPF-IPD-----IPGIEH---AIDSDAALDLPSKPEKIAIVGGGY 262

Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
           I +E A    G K D  +   +  +L R F   +     +     G++F    S + +  
Sbjct: 263 IALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIK 321

Query: 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQFRTRM 343
            +DG + ++K   G+      ++   G KP       E VG+     G I+VD   RT +
Sbjct: 322 SADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSV 380

Query: 344 PGIFAIGDV 352
           P I+A+GDV
Sbjct: 381 PSIWAVGDV 389

Length = 558

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 64/267 (23%), Positives = 105/267 (39%), Gaps = 63/267 (23%)

Query: 148 YQDPVTSIDIE-KQTLITNSGK---------LLKYGSLIVATGCTASRFPEKIGGYLPGV 197
            +  V  +D E K+       K          + Y  L+VA G   + F   I G     
Sbjct: 80  LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF--NIPGVEERA 137

Query: 198 HYIRDVADADAL--------------ISSLEKAKK---VVVVGGGYIGMEVAAA-AVGWK 239
            ++++V  A  +               +S+E+ K+    VVVGGG  G+E AA  A  ++
Sbjct: 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFR 197

Query: 240 LDTTIIFPENHLLQRL--------------FTPSLAQRYEQL-YQQNGVKFVKGASIKNL 284
            D   + PE  L++                F  +L ++Y Q   ++ GV      ++K +
Sbjct: 198 DDVRNLNPE--LVEECKVTVLEAGSEVLGSFDQAL-RKYGQRRLRRLGVDIRTKTAVKEV 254

Query: 285 EAGSDGRVAAVKLEDGSTIDADTIV--IGIGAKPTV--SPFERVGLNSSVGGIQVDGQFR 340
                     V L+DG  I    +V   G+G  P       ++    +S G I VD   R
Sbjct: 255 LDKE------VVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDK----TSRGRISVDDHLR 304

Query: 341 TR-MPGIFAIGDVAAFPLKMYDRTARV 366
            + +P +FA+GD AA   +     A+V
Sbjct: 305 VKPIPNVFALGDCAANEERPLPTLAQV 331

Length = 424

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 41/220 (18%)

Query: 168 KLLK-YGSLIVATGCTASR---FPEKIGGYLPGVHY--------IRDVADADALISSLEK 215
           +LL  Y ++ + TG    R    P   G  L GVH+         R V   +       K
Sbjct: 224 ELLAEYDAVFLGTGAYKPRDLGIP---GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAK 280

Query: 216 AKKVVVVGGGYIGMEVAAAAV--GWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLY- 268
            K VVV+GGG  GM+    A+  G K     D   + P     +    P    + E    
Sbjct: 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN-KNNPWPYWPMKLEVSNA 339

Query: 269 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED------------GS--TIDADTIVIGIGA 314
            + GV+       K  E G +G+V  VK+              GS   + AD +++ +G 
Sbjct: 340 HEEGVEREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398

Query: 315 KPTVSP-FERVGLNSSVGG--IQVDGQFRTRMPGIFAIGD 351
               +    + G+     G     D  ++T  P +FA GD
Sbjct: 399 TGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438

Length = 471

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           ++++V+G   + +E+A A        T++     L Q    P++ +  E  +++ G++ +
Sbjct: 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE--DPAVGEAIEAAFRREGIEVL 236

Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQ 334
           K      ++   +GR   ++   G T+ A+ +++  G  P       E +G+ +  G I+
Sbjct: 237 KQTQASEVD--YNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIR 293

Query: 335 VDGQFRTRMPGIFAIGDVAAFPLKMY 360
           +D   +T + GI+A GD    P  +Y
Sbjct: 294 IDEHLQTTVSGIYAAGDCTDQPQFVY 319

Length = 468

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY- 264
            VV++GGG  G+  A       L   +I  E              LL+      LA    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60

Query: 265 --EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 322
             E++Y++ GV+ + G  + +++ G    V    +E G  I  D ++I  GA+P +    
Sbjct: 61  LPEEVYKEFGVEVLLGTEVVDIDRGE-KTVVLKDVETGREITYDKLIIATGARPRIPGIP 119

Query: 323 RVGL 326
            V +
Sbjct: 120 GVEV 123

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 217 KKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 274
           K VVVVGGG   M+ A AA  V      T+++       +   P+  + YE    ++GV+
Sbjct: 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT----KQEMPAWREEYE-EALEDGVE 723

Query: 275 FVKGASIKNLEA--------------GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 320
           F +  + ++ +A                 GR   V+  +  T++ADT++  IG +     
Sbjct: 724 FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL 783

Query: 321 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 352
            +  G+     G   VD    T +  ++ IGDV
Sbjct: 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDV 816

Length = 1019

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 34/187 (18%)

Query: 188 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT-TIIF 246
           E++ G + G+ ++R+VA   AL       KKVVV+GGG   ++ A  A+    ++ TI++
Sbjct: 299 EELPGVISGIDFLRNVALGTAL----HPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354

Query: 247 -------PENHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 288
                  P N             L+ L  P   +R E   +   +K  +G      E   
Sbjct: 355 RRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQG------EPDE 408

Query: 289 DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQ-FRTRMP 344
            GR   V +E GS  T+ ADT++  IG +      E  G+ +S  G ++VD +  +T + 
Sbjct: 409 SGRRRPVPVE-GSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVA 467

Query: 345 GIFAIGD 351
           G+FA GD
Sbjct: 468 GVFAGGD 474

Length = 652

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 47.5 bits (114), Expect = 9e-06
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYEQLYQQNGV 273
            ++VVG G  G E A+A     +  T++   + +L     P      A+  E+++ + G+
Sbjct: 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-----PGEDADAAEVLEEVFARRGM 233

Query: 274 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVG 331
             +K +  +++E   DG V  V L DG T++    ++ +G+ P  +    E  G+  +  
Sbjct: 234 TVLKRSRAESVERTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPS 291

Query: 332 G-IQVDGQFRTRMPGIFAIGDVAA-FPL 357
           G I VD   RT +PGI+A GD     PL
Sbjct: 292 GHITVDRVSRTSVPGIYAAGDCTGVLPL 319

Length = 466

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 34/163 (20%)

Query: 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGV 273
            KKV VVGGG   M+ A  A     +   I      + R     +  R E++   ++ G+
Sbjct: 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTI------VYRRSEEEMPARLEEVKHAKEEGI 623

Query: 274 KF----------------VKGASIKNLEAG---SDGRVAAVKLEDGS--TIDADTIVIGI 312
           +F                VK   ++ +E G   + GR   V +  GS  T+D D +++ +
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIP-GSTFTVDVDLVIVSV 682

Query: 313 GAKPT---VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 352
           G  P     S    + LN   G I VD + ++ +PGI+A GD+
Sbjct: 683 GVSPNPLVPSSIPGLELNRK-GTIVVDEEMQSSIPGIYAGGDI 724

Length = 752

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 26/203 (12%)

Query: 166 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKVVVVG 223
           +G +LK  ++I+ATG   +R+   +   +PG    R+  VA        L K K+V V+G
Sbjct: 308 NGAVLKARTVILATG---ARW-RNMN--VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIG 361

Query: 224 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL---AQRYEQLYQQNGVKFVKGAS 280
           GG  G+E A       +D   I     LL+  F P L   A   ++L     V  +  A 
Sbjct: 362 GGNSGVEAA-------IDLAGIVEHVTLLE--FAPELKADAVLQDKLRSLPNVTIITNAQ 412

Query: 281 IKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV 335
              +  G   +V  ++  D  +     ++ + + + IG  P     +     +  G I V
Sbjct: 413 TTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIV 471

Query: 336 DGQFRTRMPGIFAIGDVAAFPLK 358
           D +  T +PG+FA GD    P K
Sbjct: 472 DARGETNVPGVFAAGDCTTVPYK 494

Length = 520

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 21/153 (13%)

Query: 217 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 274
           K+++V+GGG IG+E+      +G ++D   +F +         P+  +   +++ +   K
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-------VIPAADKDIVKVFTKRIKK 227

Query: 275 FVK---GASIKNLEAGSDGRVAAVKLEDGSTIDA----DTIVIGIGAKPTVSPF--ERVG 325
                    +  +EA  DG    V +E           D +++ +G  P       E+ G
Sbjct: 228 QFNIMLETKVTAVEAKEDGIY--VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAG 285

Query: 326 LN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
           +     G I+VD Q RT +P IFAIGD+   P+
Sbjct: 286 VEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318

Length = 471

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 35/208 (16%)

Query: 64  VIVGGGNAAG-YAARTFVEHGMADGRLCIVSKEA--------YAPYER---PALTKGYLF 111
           ++VG G AAG   A   ++ G A   + IV + A        + P+ R   P+   G   
Sbjct: 1   LVVGAG-AAGMAFADHLLDLGDAP--VIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFG 57

Query: 112 P-------LDKKPARLPGFHTCVGSGGERQTP-EWY-KEKGIEMIYQDPVTSIDIEK--Q 160
                   +D  P           SG E     E   +  G+ +     VT+++ +    
Sbjct: 58  MPDLNALSIDTSPKWDGKAELA--SGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRF 115

Query: 161 TLITNSGKLLKYGSLIVATGCTASRFPEKI-GGYLPGVHYIRDVADADALISSLEKAKKV 219
            +    G+ ++   ++ ATG  +   P    G    GVH +  +   D       K K V
Sbjct: 116 VVRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERID------LKGKTV 169

Query: 220 VVVGGGYIGMEVAAAAVGWKLDTTIIFP 247
            V+GGG+  ++ A   +    D T I  
Sbjct: 170 AVIGGGHTAIDAALNLLDLGKDVTWITR 197

Length = 202

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 63/258 (24%), Positives = 97/258 (37%), Gaps = 44/258 (17%)

Query: 169 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--------VADADALISSLE-KAKKV 219
           L +Y ++ +ATG    R  +  G    GV +  D        V    A   +   K K+V
Sbjct: 206 LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRV 265

Query: 220 VVVGGGYIGMEVAAAAV--GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFV 276
           VV+GGG   M+ A  A+  G K   T  + E+   +    P+ A + E     + GV+ +
Sbjct: 266 VVIGGGDTAMDCAGTALRLGAK-SVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERL 324

Query: 277 KGASIKNLEAGSDGRVAAVKLED-------------------GST--IDADTIVIGIGAK 315
                K       GRV  VK                      G+     ADT+++ IG +
Sbjct: 325 PFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFE 384

Query: 316 PTVSPF--ERVGLNSSVGG-IQVDGQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 371
              +       GL     G I+VD    +T +PG+FA GD              V  +  
Sbjct: 385 GDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVR-----GAAL-VVWAIAE 438

Query: 372 ARQSAQHCIKALLSAQTH 389
            R++A+   K LL  +  
Sbjct: 439 GREAAKAIDKELLLGKAV 456

Length = 457

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 37/214 (17%)

Query: 217 KKVVVVGGGYIGMEVAAAAV---GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 273
           K VVVVGGG   M+ A AA+   G +   T+++       + + P+  +  E    ++GV
Sbjct: 667 KHVVVVGGGNTAMDAARAALRVPGVE-KVTVVYRRT----KRYMPASREELE-EALEDGV 720

Query: 274 KFVKGASIKNLEAG-------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 320
            F +  S ++ E G             + GR   V   +   + ADT++  +G +     
Sbjct: 721 DFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL 780

Query: 321 FERVGLNSSVGG-IQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 378
            ++ G+     G   V+     T +  +F IGD    P  +      VE +   R++A  
Sbjct: 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATI------VEAIADGRKAA-- 832

Query: 379 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVW 412
              A+LS +    D    F       E    +V+
Sbjct: 833 --NAILSREGLNSDVDKVF---PINEEVRLAEVY 861

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 20/114 (17%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTII-------FPENHLLQRLFT-----PSLAQRY 264
           K++V++GGG+ G+  A        D  I             LL  + T       +A   
Sbjct: 4   KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPL 63

Query: 265 EQLYQ-QNGVKFVKGASIK-NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316
             L +    V+FV+G     + +A        V L D   I  D +V+ +G++ 
Sbjct: 64  RALLRKSGNVQFVQGEVTDIDRDAKK------VTLADLGEISYDYLVVALGSET 111

Length = 405

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 34/161 (21%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGVK 274
           KKV VVGGG + M+ A  A+    +  I++       R     L  R E+++  ++ GV 
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVY-------RRSEEELPARVEEVHHAKEEGVI 334

Query: 275 FVKGASIKNLEAGSDGRVAAVKLE-------DGS-------------TIDADTIVIGIGA 314
           F    +   +    +G V  +K         D S              ++ DT+++ +G 
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394

Query: 315 KPT---VSPFERVGLNSSVGGIQVDGQF-RTRMPGIFAIGD 351
            P     S  + + +N   G I  D +   T   G+FA GD
Sbjct: 395 SPNPLISSTTKGLKINKR-GCIVADEETGLTSKEGVFAGGD 434

Length = 464

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 17/190 (8%)

Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVGGGYIGMEVAA 233
            ++ATG T +  P  I G +   ++    A  +D L +SL       V+G   +  E+A 
Sbjct: 154 CLIATGSTPT-IP-PIPGLMDTPYWTSTEALFSDELPASL------TVIGSSVVAAEIAQ 205

Query: 234 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 293
           A    +L + +       L     P L +     +++ G++ +       +E   +G V 
Sbjct: 206 AYA--RLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV- 262

Query: 294 AVKLEDGSTIDADTIVIGIG--AKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIG 350
            +    G    A+ ++I  G  A       E VG+ +   G I V+    T  P I+A G
Sbjct: 263 -LTTGHGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAG 320

Query: 351 DVAAFPLKMY 360
           D +  P  +Y
Sbjct: 321 DCSDLPQFVY 330

Length = 479

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 219 VVVVGGGYIGMEVAAAAV-----------------GWKLDTTIIFPENHLLQRLFT-PSL 260
           V+VVGGG  G   AAAA+                 G   DT  I  EN +     T   L
Sbjct: 215 VLVVGGGPAG---AAAAIYAARKGLRTAMVAERIGGQVKDTVGI--ENLISVPYTTGSQL 269

Query: 261 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 315
           A   E+  +Q  +  ++    K +E  ++  +  V LE G  + A ++++  GA+
Sbjct: 270 AANLEEHIKQYPIDLMENQRAKKIE--TEDGLIVVTLESGEVLKAKSVIVATGAR 322

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 204 ADADALISSLEKAKK---VVVVGGGYIGMEVAAAAV-----------------GWKLDTT 243
             A A  +    AK    V+VVGGG  G   AAAA+                 G  LDT 
Sbjct: 196 TGAAARAAEELNAKDPYDVLVVGGGPAG---AAAAIYAARKGIRTGIVAERFGGQVLDTM 252

Query: 244 IIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 302
            I  EN +       P LA   E+  ++  V  +       LE  +   +  V+L +G+ 
Sbjct: 253 GI--ENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELANGAV 308

Query: 303 IDADTIVIGIGAK 315
           + A T+++  GA+
Sbjct: 309 LKAKTVILATGAR 321

Length = 517

>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313
           +LFT  LA   EQL    GVKF     +  L     GR+  V+   G  I AD  V+ +G
Sbjct: 201 QLFTQRLAAMAEQL----GVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALG 254

Length = 416

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 34/160 (21%)

Query: 215 KAKKVVVVGGGYIGMEVA---AAAVGWKLDTTIIFPENH--LLQRLFTPSLA-----QRY 264
           K K+V V+GGG  G+E A   A  V             H  +L+  F P L      Q  
Sbjct: 350 KGKRVAVIGGGNSGVEAAIDLAGIV------------KHVTVLE--FAPELKADQVLQD- 394

Query: 265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 319
            +L     V  +  A    +  G   +V  +  +D +T     ++ + + + IG  P   
Sbjct: 395 -KLRSLPNVTIITNAQTTEVT-GDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTE 452

Query: 320 PF-ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
                V LN   G I VD +  T +PG+FA GD    P K
Sbjct: 453 WLKGTVELNRR-GEIIVDARGATSVPGVFAAGDCTTVPYK 491

Length = 517

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	497
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PLN02507	499	glutathione reductase	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PLN02546	558	glutathione reductase	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	100.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	100.0
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	100.0
PRK13984	604	putative oxidoreductase; Provisional	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	100.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	100.0
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.97
PLN02852	491	ferredoxin-NADP+ reductase	99.97
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.96
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.96
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.95
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.94
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.94
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.94
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.93
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.9
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.88
KOG2755	334	consensus Oxidoreductase [General function predict	99.87
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.85
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.84
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.76
PTZ00188	506	adrenodoxin reductase; Provisional	99.72
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.7
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.69
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.69
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.68
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.68
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.68
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.64
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.53
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.5
PRK09897	534	hypothetical protein; Provisional	99.36
COG2081	408	Predicted flavoproteins [General function predicti	99.31
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.27
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.12
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.07
PRK08401	466	L-aspartate oxidase; Provisional	99.06
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	99.04
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.99
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.98
COG0579	429	Predicted dehydrogenase [General function predicti	98.97
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	98.95
PRK07804	541	L-aspartate oxidase; Provisional	98.93
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.9
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.87
PRK06847	375	hypothetical protein; Provisional	98.86
PRK07395	553	L-aspartate oxidase; Provisional	98.86
PRK08071	510	L-aspartate oxidase; Provisional	98.85
PRK09077	536	L-aspartate oxidase; Provisional	98.84
PLN02815	594	L-aspartate oxidase	98.81
PRK08275	554	putative oxidoreductase; Provisional	98.81
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.8
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.79
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.78
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.78
PRK10015	429	oxidoreductase; Provisional	98.75
PRK10157	428	putative oxidoreductase FixC; Provisional	98.75
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.75
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.74
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.74
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.73
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.73
PLN02463	447	lycopene beta cyclase	98.72
PRK07512	513	L-aspartate oxidase; Provisional	98.72
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.71
PRK06834	488	hypothetical protein; Provisional	98.71
COG2081	408	Predicted flavoproteins [General function predicti	98.71
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.7
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.7
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.69
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.68
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.67
PRK07190	487	hypothetical protein; Provisional	98.66
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.65
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.64
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.63
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.63
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.62
PRK06184	502	hypothetical protein; Provisional	98.61
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.6
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.59
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.56
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.56
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.54
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.54
PRK07236	386	hypothetical protein; Provisional	98.53
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.52
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.52
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.51
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.51
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.51
PRK09126	392	hypothetical protein; Provisional	98.51
PRK08244	493	hypothetical protein; Provisional	98.5
PLN02697	529	lycopene epsilon cyclase	98.5
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.5
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.49
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.49
PRK07045	388	putative monooxygenase; Reviewed	98.49
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.48
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.47
PLN02612	567	phytoene desaturase	98.46
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.46
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.46
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.46
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.45
PRK08013	400	oxidoreductase; Provisional	98.45
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.45
PRK07233	434	hypothetical protein; Provisional	98.45
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.45
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.45
PRK05868	372	hypothetical protein; Validated	98.45
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.45
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.45
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.44
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.44
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.44
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.44
PRK08163	396	salicylate hydroxylase; Provisional	98.44
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.43
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.43
PRK08274	466	tricarballylate dehydrogenase; Validated	98.43
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.41
PRK06126	545	hypothetical protein; Provisional	98.41
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.4
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.4
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.4
PRK06175	433	L-aspartate oxidase; Provisional	98.4
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.39
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.39
PRK07588	391	hypothetical protein; Provisional	98.39
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.39
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.39
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.37
PRK14694	468	putative mercuric reductase; Provisional	98.37
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.37
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.37
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.37
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.36
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.36
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.36
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.36
PRK06116	450	glutathione reductase; Validated	98.36
PRK06185	407	hypothetical protein; Provisional	98.36
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.35
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.34
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.34
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.34
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.34
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.33
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.33
PRK11445	351	putative oxidoreductase; Provisional	98.33
PRK06847	375	hypothetical protein; Provisional	98.33
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.33
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.33
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.32
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.32
PRK07846	451	mycothione reductase; Reviewed	98.32
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.32
PRK06753	373	hypothetical protein; Provisional	98.31
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.31
PRK06370	463	mercuric reductase; Validated	98.31
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.31
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.31
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.31
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.3
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.29
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.28
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.28
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.28
TIGR02053	463	MerA mercuric reductase. This model represents the	98.27
PRK06996	398	hypothetical protein; Provisional	98.27
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.26
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.25
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.25
PRK05257	494	malate:quinone oxidoreductase; Validated	98.25
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.25
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.24
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.24
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.23
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.23
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.23
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.23
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.22
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.22
PLN02507	499	glutathione reductase	98.22
PRK06475	400	salicylate hydroxylase; Provisional	98.21
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.21
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.21
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.21
PLN02487	569	zeta-carotene desaturase	98.2
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.2
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.2
PTZ00052	499	thioredoxin reductase; Provisional	98.19
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.19
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.19
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.19
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.19
PRK07236	386	hypothetical protein; Provisional	98.18
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.18
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.18
PLN02661	357	Putative thiazole synthesis	98.17
PRK13748	561	putative mercuric reductase; Provisional	98.17
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.17
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.17
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.16
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.16
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.16
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.16
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.15
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.15
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.15
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.15
PRK14727	479	putative mercuric reductase; Provisional	98.14
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.13
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.12
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.12
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.11
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.1
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.1
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.09
PRK07121	492	hypothetical protein; Validated	98.09
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.09
PRK06834	488	hypothetical protein; Provisional	98.08
PTZ00058	561	glutathione reductase; Provisional	98.08
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.07
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.07
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.07
PLN02463	447	lycopene beta cyclase	98.06
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.06
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.06
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.06
PRK07045	388	putative monooxygenase; Reviewed	98.05
PRK07538	413	hypothetical protein; Provisional	98.05
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.05
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.05
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.02
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.01
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.01
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.01
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.01
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.0
PRK10262	321	thioredoxin reductase; Provisional	98.0
PRK08244	493	hypothetical protein; Provisional	97.99
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.98
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.98
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.98
PRK12831	464	putative oxidoreductase; Provisional	97.96
PRK10157	428	putative oxidoreductase FixC; Provisional	97.96
PRK08163	396	salicylate hydroxylase; Provisional	97.96
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.95
PLN02852	491	ferredoxin-NADP+ reductase	97.94
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.94
PRK08294	634	phenol 2-monooxygenase; Provisional	97.93
PRK07588	391	hypothetical protein; Provisional	97.93
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.92
PLN02546	558	glutathione reductase	97.92
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.92
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.91
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.91
PRK06184	502	hypothetical protein; Provisional	97.9
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.89
PRK07190	487	hypothetical protein; Provisional	97.89
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.89
PRK05868	372	hypothetical protein; Validated	97.86
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.86
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.85
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.84
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.84
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.84
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.84
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.83
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.83
PRK09126	392	hypothetical protein; Provisional	97.82
PLN02697	529	lycopene epsilon cyclase	97.82
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.82
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.82
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.81
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.8
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.8
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.8
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.8
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.79
PRK08013	400	oxidoreductase; Provisional	97.79
PTZ00188	506	adrenodoxin reductase; Provisional	97.78
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.77
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.76
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.76
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.75
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.75
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.75
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.75
PRK06753	373	hypothetical protein; Provisional	97.74
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.74
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.74
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.74
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.73
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.73
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.72
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.72
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.72
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.71
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.71
PLN02661	357	Putative thiazole synthesis	97.69
PRK07208	479	hypothetical protein; Provisional	97.67
PRK10015	429	oxidoreductase; Provisional	97.66
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.66
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.64
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.63
PRK06185	407	hypothetical protein; Provisional	97.63
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.63
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.62
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.62
PRK06475	400	salicylate hydroxylase; Provisional	97.62
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.61
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.6
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.6
PLN02529	738	lysine-specific histone demethylase 1	97.59
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.59
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.57
PRK09897	534	hypothetical protein; Provisional	97.56
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.54
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.54
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.53
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.52
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.52
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.5
PRK06126	545	hypothetical protein; Provisional	97.49
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.48
COG3349	485	Uncharacterized conserved protein [Function unknow	97.47
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.46
PLN02268	435	probable polyamine oxidase	97.45
PLN02576	496	protoporphyrinogen oxidase	97.45
PLN02985	514	squalene monooxygenase	97.45
PRK13984	604	putative oxidoreductase; Provisional	97.45
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.44
PLN02568	539	polyamine oxidase	97.43
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.41
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.4
PRK06996	398	hypothetical protein; Provisional	97.39
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.38
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.38
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.36
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.35
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.34
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.34
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.33
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.33
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.32
PRK07538	413	hypothetical protein; Provisional	97.31
PTZ00367	567	squalene epoxidase; Provisional	97.28
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.26
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.26
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.26
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.25
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.25
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.25
PRK11445	351	putative oxidoreductase; Provisional	97.23
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.22
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.22
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.2
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.2
PLN02785	587	Protein HOTHEAD	97.19
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.17
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.16
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.15
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.13
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.11
PRK08401	466	L-aspartate oxidase; Provisional	97.1
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.09
PRK07804	541	L-aspartate oxidase; Provisional	97.08
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.07
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.05
PLN02676	487	polyamine oxidase	97.03
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.99
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.98
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.97
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.96
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.95
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.93
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.89
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	96.87
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.84
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.83
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	96.81
PLN02985	514	squalene monooxygenase	96.8
COG3573	552	Predicted oxidoreductase [General function predict	96.79
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.78
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.78
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.77
PRK08275	554	putative oxidoreductase; Provisional	96.77
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.76
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	96.75
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.73
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.73
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.72
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.69
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.68
PRK06175	433	L-aspartate oxidase; Provisional	96.67
PRK12839	572	hypothetical protein; Provisional	96.66
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.66
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.65
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.61
PRK08294	634	phenol 2-monooxygenase; Provisional	96.6
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.6
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.6
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.6
PRK02106	560	choline dehydrogenase; Validated	96.59
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.57
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.49
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.49
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.49
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.48
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.48
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.46
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.45
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.44
PLN03000	881	amine oxidase	96.44
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.43
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.43
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.37
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.35
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.28
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	96.27
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.27
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.24
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.22
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.17
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.15
PLN02976	1713	amine oxidase	96.13
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.1
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.04
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	96.02
PRK08071	510	L-aspartate oxidase; Provisional	95.98
PRK07395	553	L-aspartate oxidase; Provisional	95.98

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=1.4e-58  Score=464.47  Aligned_cols=390  Identities=27%  Similarity=0.428  Sum_probs=336.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +++|||||||+||++||..|+++++ +.+|+|++++++.+|.+|++++.++.........             ....+++
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~-------------~~~~~~~   68 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQ-------------VLPANWW   68 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccc-------------cCCHHHH
Confidence            4689999999999999999999987 7899999999999999999987666433221111             2346778


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  219 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  219 (497)
                      .+.+++++.++.|..++.+.+.+.+++|+.+.||+||||||+.|+.+| .++...++++++++..++..+.+.+..++++
T Consensus        69 ~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~v  147 (396)
T PRK09754         69 QENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERSV  147 (396)
T ss_pred             HHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCeE
Confidence            889999999989999999999999999999999999999999987544 3444467889998899998888877789999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  299 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~  299 (497)
                      +|||+|++|+|+|..|+++|.+||++++.+.++++.+++...+.+.+.++++||++++++++++++.  ++. ..+.+.+
T Consensus       148 vViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~  224 (396)
T PRK09754        148 VIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQS  224 (396)
T ss_pred             EEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECC
Confidence            9999999999999999999999999999999988777888999999999999999999999999974  232 3577889


Q ss_pred             CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917          300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  379 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~  379 (497)
                      |+++++|.||+++|.+||+.+++++++..+ ++|.||++++|+.|||||+|||+..+.. .|...+.++|..|..||+.+
T Consensus       225 g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~a  302 (396)
T PRK09754        225 GETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIA  302 (396)
T ss_pred             CCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHH
Confidence            999999999999999999988888888775 6799999999999999999999987766 67777788999999999999


Q ss_pred             HHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCC-cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhh
Q 010917          380 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQ  457 (497)
Q Consensus       380 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~  457 (497)
                      |+||++. ..+|..+||||+++|+..       ++++|.... +...+++.+ .++..+|+++|+|+|+++ .|+++++.
T Consensus       303 a~ni~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~  373 (396)
T PRK09754        303 AAAMLGL-PLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREIR  373 (396)
T ss_pred             HHHhcCC-CCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHHH
Confidence            9999964 567899999999999875       899997544 345566644 457778889999999996 88999999


Q ss_pred             HHHHHHhCCCCCChhhhcCCC
Q 010917          458 LLPTLARSQPFVDKAKLQQAS  478 (497)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~  478 (497)
                      .++++++.+..++++.+.|+.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~  394 (396)
T PRK09754        374 PIRKWIQSGKTFDAKLLIDEN  394 (396)
T ss_pred             HHHHHHHCCCCCCHHHhcCcc
Confidence            999999999999988887763

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=5.9e-55  Score=417.11  Aligned_cols=402  Identities=45%  Similarity=0.759  Sum_probs=362.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .+.++|||||++|..|+.++++.|+ ..+++++.++.++||.++.|++-.+...               .+...+..+||
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~~---------------~~~a~r~~e~Y  137 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTVG---------------EGLAKRTPEFY  137 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeecc---------------ccccccChhhH
Confidence            5799999999999999999999997 7899999999999999998887443322               22235667899


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  219 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  219 (497)
                      ++.+|++++++.|+.+|.+.+++.+.+|+.+.|++|+||||+.+.. +++||.+.+++.+++++.+++.+........+|
T Consensus       138 ke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v  216 (478)
T KOG1336|consen  138 KEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKV  216 (478)
T ss_pred             hhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence            9999999999999999999999999999999999999999998875 567898899999999999999998888889999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  299 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~  299 (497)
                      +++|+|++|+|+|..|...+.+||+|++.+.++++.+.+.+.+.+++++++.||+++.++.+.+++.+.+|.+..|.+.+
T Consensus       217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d  296 (478)
T KOG1336|consen  217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD  296 (478)
T ss_pred             EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             CcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917          300 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  378 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  378 (497)
                      |+++++|.||+.+|.+|++.+++. +..++ .|+|.||+.+||+.|||||+||++.+|.+.++...+++|++.|+.+|+.
T Consensus       297 g~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~  375 (478)
T KOG1336|consen  297 GKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ  375 (478)
T ss_pred             CCEeccCeEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence            999999999999999999999987 55544 7899999999999999999999999999988888889999999999998


Q ss_pred             HHHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCCcEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhh
Q 010917          379 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQ  457 (497)
Q Consensus       379 ~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~  457 (497)
                      +...+.......|+++||||+..|+..       |+++|...++.+..|+.+ .+|..+|++ +..+++.+-.+..+...
T Consensus       376 av~ai~~~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~  447 (478)
T KOG1336|consen  376 AVKAIKMAPQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVS  447 (478)
T ss_pred             hhhhhhccCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHH
Confidence            877776544444789999999999864       899999888888889887 568999999 88888887788888899


Q ss_pred             HHHHHHhCCCCCChhhhcCCCcHHHHHHHH
Q 010917          458 LLPTLARSQPFVDKAKLQQASSVEEALEIA  487 (497)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (497)
                      .+..++++++.+..-++.+.++.+.++.+.
T Consensus       448 ~~a~l~~~~~~v~~~~~~~~~~~~~~~~~~  477 (478)
T KOG1336|consen  448 QFAKLARQGPEVTSLKLLSKSGDSFWLTIL  477 (478)
T ss_pred             HHHHHHhcCCcchhhhhccccchhhHHhhc
Confidence            999999999999988888899998887653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=2e-48  Score=418.40  Aligned_cols=377  Identities=21%  Similarity=0.357  Sum_probs=311.3

Q ss_pred             EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHc
Q 010917           63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK  142 (497)
Q Consensus        63 VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (497)
                      |||||||+||++||.+|++.+....+||||+++++.+|.++.++. ++... ....++           .....+|+++.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~   67 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKH   67 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHC
Confidence            699999999999999999876435699999999999999988876 33321 112222           23467889999


Q ss_pred             CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEE
Q 010917          143 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  222 (497)
Q Consensus       143 ~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv  222 (497)
                      +++++++++|+.+|++.++|++.+|.++.||+||||||+.|+ .|+++|.+.++++.++++.+++.+.+....+++++||
T Consensus        68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV  146 (785)
T TIGR02374        68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI  146 (785)
T ss_pred             CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence            999999999999999999999999999999999999999987 4667888888999999999999988887888999999


Q ss_pred             cCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE
Q 010917          223 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST  302 (497)
Q Consensus       223 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~  302 (497)
                      |+|++|+|+|..|+++|.+|+++++.+.++++.+++.....+.+.++++||++++++.++++..  ++.+..+.+++|++
T Consensus       147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~  224 (785)
T TIGR02374       147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS  224 (785)
T ss_pred             CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE
Confidence            9999999999999999999999999999998888999999999999999999999999999973  44566788999999


Q ss_pred             EEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 010917          303 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  382 (497)
Q Consensus       303 i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~  382 (497)
                      +++|.||+++|.+|+.+++++++++.+ ++|.||++++|+.|+|||+|||+..+...++      .+..|..||+.+|.|
T Consensus       225 i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~n  297 (785)
T TIGR02374       225 LEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADH  297 (785)
T ss_pred             EEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHH
Confidence            999999999999999999999999886 7899999999999999999999987665433      567789999999999


Q ss_pred             HhcCCCCCCCCCCceee-eccccCCCCcceeeEEeecCCC-----cEEEEccCCCcEEEEEEECCEEEEEEeecCChHHh
Q 010917          383 LLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG-----ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEF  456 (497)
Q Consensus       383 i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  456 (497)
                      |++....+|...+.... +.+++.       +..+|....     .+.........|.++++++++|+|+++ +++....
T Consensus       298 i~g~~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~  369 (785)
T TIGR02374       298 ICGVECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDY  369 (785)
T ss_pred             hcCCCCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHH
Confidence            99754355665554322 233322       344554321     122222223558899999999999996 7888899


Q ss_pred             hHHHHHHhCCCCCC
Q 010917          457 QLLPTLARSQPFVD  470 (497)
Q Consensus       457 ~~~~~~~~~~~~~~  470 (497)
                      ..+.++++++..++
T Consensus       370 ~~L~~li~~~~~l~  383 (785)
T TIGR02374       370 GRLLDMVLKQADIS  383 (785)
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999998876554

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=3.8e-48  Score=415.25  Aligned_cols=381  Identities=19%  Similarity=0.323  Sum_probs=307.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      +++|||||||+||+.+|..|++++. +..+||||+++++++|.++.++.. +..  ....++           .....+|
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~-~~~--~~~~~l-----------~~~~~~~   68 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY-FSH--HTAEEL-----------SLVREGF   68 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh-HcC--CCHHHc-----------cCCCHHH
Confidence            4589999999999999999988642 245899999999999999888753 221  111122           2345788


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCe
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  218 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  218 (497)
                      +++.|++++.+++|+.+|++.+.|.+.+|+.+.||+||||||+.|. .|+++|.+.++++.++++.+...+......+++
T Consensus        69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~  147 (847)
T PRK14989         69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKR  147 (847)
T ss_pred             HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence            9999999999999999999999999999989999999999999987 466788778889999999999998887778899


Q ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 010917          219 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  298 (497)
Q Consensus       219 vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~  298 (497)
                      ++|||+|++|+|+|..|+++|.+|+++++.+.+++..++++....+++.|+++||+++++..++++..++++....+.+.
T Consensus       148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~  227 (847)
T PRK14989        148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA  227 (847)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC
Confidence            99999999999999999999999999999999998779999999999999999999999999999975434455678889


Q ss_pred             CCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHH
Q 010917          299 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  377 (497)
Q Consensus       299 ~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  377 (497)
                      +|+++++|.||+|+|.+||+++++++|++.+ +|+|.||++++|+.|+|||+|||+.+....++      .+..|..||+
T Consensus       228 dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~  301 (847)
T PRK14989        228 DGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQ  301 (847)
T ss_pred             CCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHH
Confidence            9999999999999999999999999999875 57899999999999999999999987655433      5667999999


Q ss_pred             HHHHHHhcCCCCCCCCCCce-eeeccccCCCCcceeeEEeecCCCc------EEEEccCCCcEEEEEEEC--CEEEEEEe
Q 010917          378 HCIKALLSAQTHTYDYLPYF-YSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWIDS--GKLKGVLV  448 (497)
Q Consensus       378 ~~a~~i~~~~~~~~~~~p~~-~~~~~~~~g~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~--~~~~g~~~  448 (497)
                      .+|.||++.. ..|...... -.+.+++.       +..+|...+.      ..........|.++.+++  ++|+|+++
T Consensus       302 vaa~~i~g~~-~~~~g~~~~~~lk~~G~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l  373 (847)
T PRK14989        302 VAVDHLLGSE-NAFEGADLSAKLKLLGVD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL  373 (847)
T ss_pred             HHHHHhcCCC-cCCCCcccceEEEECCcc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE
Confidence            9999999753 344432221 11223221       3344532221      223333345688887754  69999997


Q ss_pred             ecCChHHhhHHHHHHhCCCCCC
Q 010917          449 ESGSPEEFQLLPTLARSQPFVD  470 (497)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~  470 (497)
                       +++..+...+.+++.++..+.
T Consensus       374 -vGd~~~~~~l~~~~~~~~~l~  394 (847)
T PRK14989        374 -VGDTSDYGNLLQLVLNAIELP  394 (847)
T ss_pred             -ECCHHHHHHHHHHHHcCCCCc
Confidence             778888888888887776554

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=1.1e-47  Score=383.70  Aligned_cols=362  Identities=23%  Similarity=0.357  Sum_probs=287.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +++|||||||+||+++|..|++.+. +.+||||++++..+|.+|.++..+. . ...+.++.          .....+++
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~-~-~~~~~~~~----------~~~~~~~~   68 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFS-Q-GQRADDLT----------RQSAGEFA   68 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHh-C-CCCHHHhh----------cCCHHHHH
Confidence            3699999999999999999999875 7899999999999999988765332 1 22222210          11245677


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  219 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  219 (497)
                      +++|++++.+++|+.++++.+.+.+ ++..+.||+||||||+.|. .|.++|...  ++.++++.++..+...+..++++
T Consensus        69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~v  144 (377)
T PRK04965         69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRV  144 (377)
T ss_pred             HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeE
Confidence            8899999999999999999888886 4567999999999999987 455666433  77888888888877777788999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  299 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~  299 (497)
                      +|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++.+...+.+.+++.||++++++.+++++..+ +. ..+.+.+
T Consensus       145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~  222 (377)
T PRK04965        145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-SG-IRATLDS  222 (377)
T ss_pred             EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC-CE-EEEEEcC
Confidence            999999999999999999999999999999988877788999999999999999999999999998542 22 3577889


Q ss_pred             CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917          300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  379 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~  379 (497)
                      |+++++|.||+|+|.+|+..+++++++..++ ++.||++++|+.|||||+|||+..+...      ...+..|..||+.+
T Consensus       223 g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~  295 (377)
T PRK04965        223 GRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMAL  295 (377)
T ss_pred             CcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHH
Confidence            9999999999999999999999999998874 5999999999999999999999875432      23567789999999


Q ss_pred             HHHHhcCCCCCCCCCCceee-eccccCCCCcceeeEEeecCCC---cEEEEccCCCcEEEEEEECCEEEEEEeecCChHH
Q 010917          380 IKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE  455 (497)
Q Consensus       380 a~~i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  455 (497)
                      |.||++.. ..|...+..++ +.++++       +.++|...+   .+....+....+.++++++|+++|++++++....
T Consensus       296 a~n~~g~~-~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~  367 (377)
T PRK04965        296 AKNLLGQN-TPLKLPAMLVKVKTPELP-------LQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKE  367 (377)
T ss_pred             HHHhcCCC-cccccCCccEEEecCcee-------eEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHH
Confidence            99999743 45665444322 344432       667776543   2222222235578888899999999985444443

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=3e-47  Score=379.98  Aligned_cols=380  Identities=23%  Similarity=0.382  Sum_probs=324.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +.++||||.|+||..+..++.+......+||++..+++..|+|..++. ++.+. ....++           .....+||
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~~-~~~edi-----------~l~~~dwy   69 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGE-KTAEDI-----------SLNRNDWY   69 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCCC-ccHHHH-----------hccchhhH
Confidence            468999999999999999999965445689999999999999999886 34332 222222           23467899


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  219 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  219 (497)
                      ++++|+++.+.+|+.||++++.|+++.|.++.||+||+||||.|+.+| +||.+.++++.++++.|...+.......++.
T Consensus        70 ~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~a  148 (793)
T COG1251          70 EENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKKA  148 (793)
T ss_pred             HHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCCc
Confidence            999999999999999999999999999999999999999999998544 8999999999999999999998886667788


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  299 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~  299 (497)
                      +|||||..|+|+|..|...|.++++++..+.++.+++++.....+++.++++|++++++...+++..  ++++..+.++|
T Consensus       149 vVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D  226 (793)
T COG1251         149 VVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD  226 (793)
T ss_pred             EEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecC
Confidence            9999999999999999999999999999999999999999999999999999999999998888873  67788999999


Q ss_pred             CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917          300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  379 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~  379 (497)
                      |+.+++|.||+|+|++||.++..+.|+..++ +|.||+++||++|+|||+|+|+.+....+|      .+.-+.+|++.+
T Consensus       227 G~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yG------LVaP~yeq~~v~  299 (793)
T COG1251         227 GTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYG------LVAPLYEQAKVL  299 (793)
T ss_pred             CCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccce------ehhHHHHHHHHH
Confidence            9999999999999999999999999999985 999999999999999999999999887776      455588999999


Q ss_pred             HHHHhcCCCCCCCC-CCceeeeccccCCCCcceeeEEeecCC----C-cEEEEccCCCcEEEEEEECCEEEEEEeecCCh
Q 010917          380 IKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGSP  453 (497)
Q Consensus       380 a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~----~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  453 (497)
                      |.++.+.....|.. .++   ......|..    +-..|+..    . .+++.......|.++.+++|+|+|+++ .|+.
T Consensus       300 a~hl~~~~~~~y~gsv~s---tkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GDt  371 (793)
T COG1251         300 ADHLCGGEAEAYEGSVTS---TKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGDT  371 (793)
T ss_pred             HHHhccCcccccccccch---hhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-Eeec
Confidence            99999865544443 332   333444432    33445433    1 344454455779999999999999997 8999


Q ss_pred             HHhhHHHHHHhCCCCCC
Q 010917          454 EEFQLLPTLARSQPFVD  470 (497)
Q Consensus       454 ~~~~~~~~~~~~~~~~~  470 (497)
                      .+-..+..|+.++..++
T Consensus       372 ~d~~~l~~li~~~~~~s  388 (793)
T COG1251         372 SDGGWLLDLILKGADIS  388 (793)
T ss_pred             ccchHHHHHHhcCCCcc
Confidence            99999999998888776

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=7.4e-46  Score=376.44  Aligned_cols=398  Identities=20%  Similarity=0.285  Sum_probs=287.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCC-CHhHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ-TPEWY  139 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  139 (497)
                      ++|||||||+||++||..|++.+. +.+|+|||+++++.|.++.++. ++..........           ... ...++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~-----------~~~~~~~~~   68 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYA-----------LAYTPEKFY   68 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECCCCcccccCCcch-hhcCccCCHHHc-----------ccCCHHHHH
Confidence            589999999999999999998864 6799999999998888655442 111100000000           011 23445


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCC---c--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  214 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g---~--~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  214 (497)
                      ++.|++++.+++|+.+|+++++|.+.++   +  ++.||+||||||+.|.. |..   +.+++++++++.+...+.+.+.
T Consensus        69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~  144 (438)
T PRK13512         69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIK  144 (438)
T ss_pred             HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHh
Confidence            6789999998999999999999888653   2  47899999999999864 322   2467788888888877766543


Q ss_pred             --cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE
Q 010917          215 --KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  292 (497)
Q Consensus       215 --~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v  292 (497)
                        .+++++|||+|++|+|+|..|+++|.+|+++++.+.+++ .+++++...+.+.|+++||++++++++++++..     
T Consensus       145 ~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-----  218 (438)
T PRK13512        145 ANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAINGN-----  218 (438)
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC-----
Confidence              468999999999999999999999999999999998886 479999999999999999999999999999731     


Q ss_pred             EEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHH
Q 010917          293 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  371 (497)
Q Consensus       293 ~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~  371 (497)
                       .+++++|+++++|.|++|+|++||++++++.++..+ +|+|.||+++||+.|||||+|||+..+....+..........
T Consensus       219 -~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~  297 (438)
T PRK13512        219 -EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWG  297 (438)
T ss_pred             -EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchH
Confidence             466778889999999999999999999999998875 577999999999999999999999754332222222334455


Q ss_pred             HHHHHHHHHHHHhcCCCCCC-CCCCceeeeccccCCCCcceeeEEeecCCCc-------EEE-E--------ccCCCcEE
Q 010917          372 ARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I--------GNFDPKIA  434 (497)
Q Consensus       372 A~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~-~--------~~~~~~~~  434 (497)
                      |.+||+.+|+||++.....+ ...+..+...++..       +..+|....+       ... .        ......+.
T Consensus       298 A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~  370 (438)
T PRK13512        298 AHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHL  370 (438)
T ss_pred             HHHHHHHHHHHhcCCCccccCCcccceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEE
Confidence            88999999999986432223 22222223333322       3334443211       000 0        01113366


Q ss_pred             EEEEE--CCEEEEEEeecCC-hHHhh-HHHHHHhCCCCCC-hhh--hcCCCcHH---HHHHHHHc
Q 010917          435 TFWID--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVD-KAK--LQQASSVE---EALEIARA  489 (497)
Q Consensus       435 ~~~~~--~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~---~~~~~~~~  489 (497)
                      +++++  +++|+|+++++.+ +.++. .+..+++.+.+++ ...  +..||+++   +.+..|++
T Consensus       371 klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~~~~~  435 (438)
T PRK13512        371 RVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGY  435 (438)
T ss_pred             EEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHHHHHH
Confidence            77664  4899999986664 55544 4456678888876 332  56677765   44554443

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=1.1e-45  Score=377.87  Aligned_cols=398  Identities=21%  Similarity=0.292  Sum_probs=292.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  141 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (497)
                      +|||||||+||++||..|++.+. +.+|+|||+++.+.|..+.++. ++......+..+           .....+++++
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~   68 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIK   68 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHH
Confidence            79999999999999999999874 6699999999988776544432 111111111111           2345677888


Q ss_pred             cCcEEEeCCcEEEEecCCCEEEECC---CcEEE--eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc--
Q 010917          142 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--  214 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~~v~~~~---g~~i~--~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--  214 (497)
                      .|++++++++|+.++++.+.+.+.+   +..+.  ||+||||||++|. .|.++|.+.++++++.++.+...+.+.+.  
T Consensus        69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~  147 (444)
T PRK09564         69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDE  147 (444)
T ss_pred             CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence            9999998999999999998888754   55666  9999999999987 45667766778888888877777766543  


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++++|+|+|++|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++.+++.  ++.+..
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~  225 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG  225 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence            468999999999999999999999999999999998887567999999999999999999999999999963  344444


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHH
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  373 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~  373 (497)
                      +.++ +.++++|.+++|+|+.|+.+++++++++.+ +|+|.||++++|+.|||||+|||+..+....++......+..|.
T Consensus       226 v~~~-~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~  304 (444)
T PRK09564        226 VVTD-KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN  304 (444)
T ss_pred             EEeC-CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence            5554 457999999999999999999999998764 57899999999999999999999987655444433345777899


Q ss_pred             HHHHHHHHHHhcCCCCCCCC-CCceeeeccccCCCCcceeeEEeecCCCc---------EEEE---------ccCCCcEE
Q 010917          374 QSAQHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI---------GNFDPKIA  434 (497)
Q Consensus       374 ~~g~~~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~~---------~~~~~~~~  434 (497)
                      +||+.+|+||++.. ..++. .+......++..       +..+|....+         ....         .+....|.
T Consensus       305 ~qg~~~a~ni~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  376 (444)
T PRK09564        305 KLGRMVGENLAGRH-VSFKGTLGSACIKVLDLE-------AARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYV  376 (444)
T ss_pred             HHHHHHHHHhcCCC-CCCCCcccceEEEECCEE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEE
Confidence            99999999999743 22221 111111122221       4445543221         0000         01113466


Q ss_pred             EEEEE--CCEEEEEEeecCC-hHH-hhHHHHHHhCCCCCCh-hhh--cCCCcHHHHH
Q 010917          435 TFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDK-AKL--QQASSVEEAL  484 (497)
Q Consensus       435 ~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~  484 (497)
                      ++.++  +++|+|+++++.+ ..+ +..+..+++++.+++. ...  ..+|+++|+.
T Consensus       377 klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~  433 (444)
T PRK09564        377 KLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW  433 (444)
T ss_pred             EEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence            66663  5899999986653 544 4455677888887762 222  3347777554

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2.2e-44  Score=357.99  Aligned_cols=396  Identities=24%  Similarity=0.369  Sum_probs=281.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCCC-----------------CCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPL-----------------DKK  116 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~l~~~-----------------~~~  116 (497)
                      +..+|+||||+||||..||..+++.|.   ++.++|+...+.-.   . +--+|.++...                 ...
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~---kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~   78 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGL---KVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP   78 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC---CEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence            346999999999999999999999998   49999999522100   0 00011111000                 000


Q ss_pred             CCCCCCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC--CcEEEeccEEeccCCCCCcCCCCCC
Q 010917          117 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIG  191 (497)
Q Consensus       117 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--g~~i~~d~lvlAtG~~~~~~~~~~g  191 (497)
                      ..++......   ...........++++++|+++.+ +..-++  .++|.+.+  .+++.+|++|||||++|..+| .++
T Consensus        79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~~~  154 (454)
T COG1249          79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPP-GPG  154 (454)
T ss_pred             CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-CCC
Confidence            0111000000   00000112233456679999886 333333  56777766  478999999999999998544 344


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                        +++...+    +++........+++++|||||++|+|+|..++++|.+||++++.+++++. +|+++++.+.+.|++.
T Consensus       155 --~~~~~~~----~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~  227 (454)
T COG1249         155 --IDGARIL----DSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKG  227 (454)
T ss_pred             --CCCCeEE----echhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHHhC
Confidence              3332222    23332222367999999999999999999999999999999999999985 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeccCcCCCc--chhhcCCcccC-CCEEecCCCCCCCCcE
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSSV-GGIQVDGQFRTRMPGI  346 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vv~a~G~~p~~~--~~~~~gl~~~~-g~i~vd~~~~t~~~~i  346 (497)
                      |+++++++.+++++..+++  ..+.+++|+  ++++|.|++|+|++||++  -+++.|++.++ |+|.||.+++|++|||
T Consensus       228 gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~I  305 (454)
T COG1249         228 GVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGI  305 (454)
T ss_pred             CeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCE
Confidence            9999999999999865444  467777776  799999999999999998  38999999875 7999998888899999


Q ss_pred             EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC--CCCCCCCCceeeeccccCCCCcceeeEEeecCCCcE-
Q 010917          347 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ--THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET-  423 (497)
Q Consensus       347 ya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~--~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~-  423 (497)
                      ||+|||+..+.          ..+.|..||+.+|.||++..  ...|..+|+   ..|..+-      +.++|....+. 
T Consensus       306 yA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea~  366 (454)
T COG1249         306 YAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEAK  366 (454)
T ss_pred             EEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHHH
Confidence            99999988664          23459999999999999622  235777887   3454432      45566543211 


Q ss_pred             -----EEEc--cC-----------CCcEEEEEEE--CCEEEEEEeecCChHHhhHHHHH-HhCCCCCC-hh-hhcCCCcH
Q 010917          424 -----IEIG--NF-----------DPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-KA-KLQQASSV  480 (497)
Q Consensus       424 -----~~~~--~~-----------~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~  480 (497)
                           +..+  .+           ...|.|+.++  .++|+|+++++.+++++...-.+ ++.+.+.+ .. ..+.|||+
T Consensus       367 ~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~  446 (454)
T COG1249         367 EAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL  446 (454)
T ss_pred             hcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence                 1111  11           2457788776  38999999988899988866654 67777655 33 46999999


Q ss_pred             HHHHHHHH
Q 010917          481 EEALEIAR  488 (497)
Q Consensus       481 ~~~~~~~~  488 (497)
                      +|++++|+
T Consensus       447 sE~~~~a~  454 (454)
T COG1249         447 SEALKEAA  454 (454)
T ss_pred             HHHHHHhC
Confidence            99999874

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.5e-43  Score=362.97  Aligned_cols=403  Identities=19%  Similarity=0.271  Sum_probs=276.1

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-Ccccc--------------CCCC---CC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYL--------------FPLD---KK  116 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~~l-~~~~l--------------~~~~---~~  116 (497)
                      ++.++||+||||||||++||..|+++|+   +|+|||++....-  .+... ++.++              ++..   ..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV   78 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence            4556999999999999999999999998   8999998642110  11000 00000              0000   00


Q ss_pred             CCCCCCCcccc---CCCCCCCCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCC
Q 010917          117 PARLPGFHTCV---GSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  192 (497)
Q Consensus       117 ~~~~~~~~~~~---~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~  192 (497)
                      ..++.......   ..........++++. |++++.++.+.   .+.+++.+ +++++.||+||||||+.|. .|.++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~  153 (463)
T PRK06370         79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGL  153 (463)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCC
Confidence            00110000000   000001233455666 99999875432   34567776 4567999999999999987 4556665


Q ss_pred             CCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCC
Q 010917          193 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  272 (497)
Q Consensus       193 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~G  272 (497)
                      +..++.+..      .+......+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus       154 ~~~~~~~~~------~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~G  226 (463)
T PRK06370        154 DEVGYLTNE------TIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREG  226 (463)
T ss_pred             CcCceEcch------HhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCC
Confidence            444443322      22222245799999999999999999999999999999999998875 78899999999999999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeccCcCCCc-c-hhhcCCccc-CCCEEecCCCCCCCCcEEE
Q 010917          273 VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFA  348 (497)
Q Consensus       273 V~i~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~iya  348 (497)
                      |++++++++.+++..+++....+... +++++++|.||+|+|.+||++ + +++.+++.+ +|++.||+++||+.|+|||
T Consensus       227 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyA  306 (463)
T PRK06370        227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYA  306 (463)
T ss_pred             CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEE
Confidence            99999999999986533322223333 345799999999999999998 4 677888775 5779999999999999999


Q ss_pred             eccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccccCCCCcceeeEEeecCCCc----
Q 010917          349 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----  422 (497)
Q Consensus       349 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~----  422 (497)
                      +|||+..+.          ....|..||+.+|+||++.....  +..+|+.  . |..+      .+..+|....+    
T Consensus       307 iGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~--~-~~~p------~ia~vG~te~~a~~~  367 (463)
T PRK06370        307 AGDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPYA--T-YTDP------PLARVGMTEAEARKS  367 (463)
T ss_pred             eeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCeE--E-EcCC------CcEeeeCCHHHHHHc
Confidence            999987542          33468999999999999643333  3345542  2 2211      14445543210    


Q ss_pred             ---E--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC--hhhhcCCCcHHH
Q 010917          423 ---T--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEE  482 (497)
Q Consensus       423 ---~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~  482 (497)
                         +  ...          .+....+.+++++  +++|+|+++++.++.++... ..+++.+.+++  ...++.|||++|
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  447 (463)
T PRK06370        368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE  447 (463)
T ss_pred             CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence               0  000          0112346777775  58999999877777776654 55678998887  344589999999


Q ss_pred             HHHHHHccCCc
Q 010917          483 ALEIARAALPV  493 (497)
Q Consensus       483 ~~~~~~~~~~~  493 (497)
                      +++.|++++..
T Consensus       448 ~~~~a~~~~~~  458 (463)
T PRK06370        448 LIPTLAQALRR  458 (463)
T ss_pred             HHHHHHHhhhh
Confidence            99999987643

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=1.3e-42  Score=356.48  Aligned_cols=403  Identities=18%  Similarity=0.252  Sum_probs=280.3

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-CccccC--------CCCCCCCCCCCCc
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLF--------PLDKKPARLPGFH  124 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~l~--------~~~~~~~~~~~~~  124 (497)
                      .+.++||+||||||||++||..|+++|+   +|+|||+.+...-.   .... ++.+..        ........+....
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~   78 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL   78 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence            3456899999999999999999999998   89999996433211   0001 110000        0000000000000


Q ss_pred             cccCCC-----------CCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCCCC
Q 010917          125 TCVGSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG  191 (497)
Q Consensus       125 ~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~g  191 (497)
                      ......           .......++++.+++++.+ ++..++....++...+|.  .+.||+||||||+.|.. |+.++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~  156 (461)
T PRK05249         79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVD  156 (461)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCC
Confidence            000000           0011234456779999986 566666655556666664  68999999999999874 43344


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                      ...+++..      ++.+......+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.++++
T Consensus       157 ~~~~~v~~------~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~  229 (461)
T PRK05249        157 FDHPRIYD------SDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRDS  229 (461)
T ss_pred             CCCCeEEc------HHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHHc
Confidence            33333332      3334333456899999999999999999999999999999999999875 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEE
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA  348 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya  348 (497)
                      ||++++++++++++..++ .+ .+.+.+|+++++|.|++|+|++||+++  ++++++..+ +|++.||+++||+.|+|||
T Consensus       230 gI~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA  307 (461)
T PRK05249        230 GVTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYA  307 (461)
T ss_pred             CCEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEE
Confidence            999999999999985433 22 456778889999999999999999885  577888765 5779999999999999999


Q ss_pred             eccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-----
Q 010917          349 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-----  422 (497)
Q Consensus       349 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-----  422 (497)
                      +|||+..+.          ....|..+|+.+|.+|++... ..+..+|..   .|..+      .+.++|....+     
T Consensus       308 iGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p------~ia~vG~te~~a~~~g  368 (461)
T PRK05249        308 VGDVIGFPS----------LASASMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIP------EISSVGKTEQELTAAK  368 (461)
T ss_pred             eeecCCCcc----------cHhHHHHHHHHHHHHHcCCCcccccCCCCeE---EECCC------cceEecCCHHHHHHcC
Confidence            999997442          345699999999999996432 334556653   33322      13344443210     


Q ss_pred             ---------------EEEEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHH
Q 010917          423 ---------------TIEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE  482 (497)
Q Consensus       423 ---------------~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~  482 (497)
                                     ....+ ....+.+++++  +++|+|+++++.++.++... ..+++.+.+++ . ...+.|||++|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e  447 (461)
T PRK05249        369 VPYEVGRARFKELARAQIAG-DNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE  447 (461)
T ss_pred             CCeEEEEEccccccceeecC-CCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence                           01111 12346777664  48999999988887776654 45678888886 3 44588999999


Q ss_pred             HHHHHHccCCc
Q 010917          483 ALEIARAALPV  493 (497)
Q Consensus       483 ~~~~~~~~~~~  493 (497)
                      +++.|++++..
T Consensus       448 ~~~~~~~~~~~  458 (461)
T PRK05249        448 AYRVAALDGLN  458 (461)
T ss_pred             HHHHHHHHHhc
Confidence            99999876654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=1.3e-42  Score=353.42  Aligned_cols=392  Identities=20%  Similarity=0.291  Sum_probs=268.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCC-ccccC--------------CC--C-CCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALT-KGYLF--------------PL--D-KKPAR  119 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~l~--------------~~--~-~~~~~  119 (497)
                      .+||+||||||||++||..|+++|+   +|+|||++....  ..+...+ +.++.              ..  . ....+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN   78 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---cEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence            4899999999999999999999998   899999864211  0000111 10000              00  0 00001


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                      ++......   -..........+++.||+++.++.+.   .+.+++.+ +++.+.||+||||||++|..++.++|.    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~----  150 (450)
T TIGR01421        79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGA----  150 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCC----
Confidence            00000000   00000112234556799999875432   23556666 456799999999999998743144442    


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                       ....   +++.+......+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++.+.+++.|+++||+++
T Consensus       151 -~~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI~i~  225 (450)
T TIGR01421       151 -ELGT---DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEKEGINVH  225 (450)
T ss_pred             -ceeE---cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCEEE
Confidence             2211   23333333345799999999999999999999999999999999998864 899999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV  352 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~  352 (497)
                      +++.+++++..+++. ..+.+++| +++++|.|++++|++||+++  ++.++++.+ +|++.||++++|+.|+|||+|||
T Consensus       226 ~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~  304 (450)
T TIGR01421       226 KLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV  304 (450)
T ss_pred             cCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEec
Confidence            999999998643332 35677777 57999999999999999985  577888775 57799999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------
Q 010917          353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------  422 (497)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------  422 (497)
                      +..+.          .+..|..||+.+|++|+++..   ..+..+|+   ..|..+-      +..+|....+       
T Consensus       305 ~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~g~  365 (450)
T TIGR01421       305 VGKVE----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKYGK  365 (450)
T ss_pred             CCCcc----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhcCC
Confidence            97542          455699999999999996432   23556665   2333321      3344433210       


Q ss_pred             --E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHH
Q 010917          423 --T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA  483 (497)
Q Consensus       423 --~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~  483 (497)
                        . +...           +....+.++.++  +++|+|+++++.++.++... ..+++.+.+++ . ..++.|||++|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  445 (450)
T TIGR01421       366 ENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEE  445 (450)
T ss_pred             CCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence              0 0000           111236666554  58999999888777776644 55678998887 3 335899999999


Q ss_pred             HHHH
Q 010917          484 LEIA  487 (497)
Q Consensus       484 ~~~~  487 (497)
                      +..+
T Consensus       446 ~~~~  449 (450)
T TIGR01421       446 LVTM  449 (450)
T ss_pred             Hhhc
Confidence            8765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.8e-42  Score=355.32  Aligned_cols=401  Identities=22%  Similarity=0.303  Sum_probs=273.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-CccccCCC------------C----CCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLFPL------------D----KKPAR  119 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l~~~------------~----~~~~~  119 (497)
                      ..+||+||||||||++||..|+++|+   +|+|||++..-.  ...... ++.++...            .    ....+
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            35899999999999999999999998   899999976211  011111 11111000            0    00000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC-CcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLP  195 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-g~~i~~d~lvlAtG~~~~~~~~~~g~~~~  195 (497)
                      +.....+.   .......+...+++.|++++.+ ++..+++...++...+ ++.+.||+||||||+.|..+   ||...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~  155 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEID  155 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCC
Confidence            00000000   0000001223456679999986 5666665544554323 46799999999999998643   343333


Q ss_pred             cEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEE
Q 010917          196 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  275 (497)
Q Consensus       196 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i  275 (497)
                      +... .+..+..   .....+++++|||+|++|+|+|..|+++|.+||++++.+.+++. +++++...+.+.++++||++
T Consensus       156 ~~~v-~~~~~~~---~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i  230 (462)
T PRK06416        156 GRVI-WTSDEAL---NLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKI  230 (462)
T ss_pred             CCeE-EcchHhh---CccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEE
Confidence            4221 1222222   22235789999999999999999999999999999999999875 78999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeccCcCCCcch--hhcCCcccCCCEEecCCCCCCCCcEEEec
Q 010917          276 VKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIG  350 (497)
Q Consensus       276 ~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~iya~G  350 (497)
                      +++++|++++.+++ .+ .+.+.++   +++++|.||+|+|.+|+++++  +++++..++|++.||++++|+.|+|||+|
T Consensus       231 ~~~~~V~~i~~~~~-~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiG  308 (462)
T PRK06416        231 KTGAKAKKVEQTDD-GV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIG  308 (462)
T ss_pred             EeCCEEEEEEEeCC-EE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEee
Confidence            99999999986433 33 3555555   679999999999999999874  67888777778999999999999999999


Q ss_pred             cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeeeccccCCCCcceeeEEeecCCCc------
Q 010917          351 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------  422 (497)
Q Consensus       351 D~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------  422 (497)
                      ||+..+.          .+..|..||+.+|.||++. ...+  ..+|.  ...++..       +..+|....+      
T Consensus       309 D~~~~~~----------~~~~A~~~g~~aa~ni~~~-~~~~~~~~~~~--~~~~~~~-------~a~vG~te~~a~~~g~  368 (462)
T PRK06416        309 DIVGGPM----------LAHKASAEGIIAAEAIAGN-PHPIDYRGIPA--VTYTHPE-------VASVGLTEAKAKEEGF  368 (462)
T ss_pred             ecCCCcc----------hHHHHHHHHHHHHHHHcCC-CCCCCCCCCCe--EEECCCc-------eEEEeCCHHHHHhcCC
Confidence            9997432          4567999999999999963 3333  33444  2333322       4455544321      


Q ss_pred             -E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHH
Q 010917          423 -T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL  484 (497)
Q Consensus       423 -~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~  484 (497)
                       . ...-.           ....+.++.++  +++|+|+++++.++.++... ..+++.+.+++ . .....|||++|++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  448 (462)
T PRK06416        369 DVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEAL  448 (462)
T ss_pred             CeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHH
Confidence             0 01100           11346666663  59999999878777776644 55678898886 3 3357899999999


Q ss_pred             HHHHccCCc
Q 010917          485 EIARAALPV  493 (497)
Q Consensus       485 ~~~~~~~~~  493 (497)
                      +.|++.+..
T Consensus       449 ~~~~~~~~~  457 (462)
T PRK06416        449 GEAALAAAG  457 (462)
T ss_pred             HHHHHHhcc
Confidence            999977654

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=4e-42  Score=351.37  Aligned_cols=392  Identities=20%  Similarity=0.300  Sum_probs=272.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCCcc-cc-----------------CCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALTKG-YL-----------------FPLDKKPAR  119 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~~~-~l-----------------~~~~~~~~~  119 (497)
                      .+||+||||||||++||..|+++|+   +|+|||++....  ..+...+.. ++                 ........+
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD   80 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence            5899999999999999999999998   899999863210  000001000 00                 000000000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                      +.......   -..+.......+.+.||+++.+ ++..++  .+++.+ +++++.||+||||||+.|. .|.++|.    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~----  151 (450)
T PRK06116         81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPS-IPDIPGA----  151 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc----
Confidence            10000000   0000011223355679999986 566665  467777 6778999999999999986 4544442    


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                       ....   +++.+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++. +++++...+.+.|+++||+++
T Consensus       152 -~~~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~~GV~i~  226 (450)
T PRK06116        152 -EYGI---TSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEKKGIRLH  226 (450)
T ss_pred             -ceeE---chhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHHCCcEEE
Confidence             2221   12222222345789999999999999999999999999999999988864 799999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEecccc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  353 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~  353 (497)
                      ++++|.+++..+++.+ .+.+.+|+++++|.||+|+|.+|+++.  ++.++++.+ +|+|.||+++||+.|||||+|||+
T Consensus       227 ~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~  305 (450)
T PRK06116        227 TNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVT  305 (450)
T ss_pred             CCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecC
Confidence            9999999986544433 467788889999999999999999985  577888775 577999999999999999999998


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCC-------c-
Q 010917          354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E-  422 (497)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~-  422 (497)
                      ..+.          .+..|..||+.+|.||++...   ..|..+|+   ..|+.+-      +..+|....       + 
T Consensus       306 ~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~~~  366 (450)
T PRK06116        306 GRVE----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYGED  366 (450)
T ss_pred             CCcC----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCCCC
Confidence            6432          455799999999999997433   24456665   3344321      344454321       1 


Q ss_pred             -E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHH
Q 010917          423 -T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL  484 (497)
Q Consensus       423 -~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~  484 (497)
                       . +....           ....+.+++++  +++|+|+++++.++.++... ..+++++.+++ . ..++.|||++|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T PRK06116        367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEF  446 (450)
T ss_pred             cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHH
Confidence             1 01111           12346777764  48999999877777766544 55678998887 3 3458999999999


Q ss_pred             HHHH
Q 010917          485 EIAR  488 (497)
Q Consensus       485 ~~~~  488 (497)
                      ..++
T Consensus       447 ~~~~  450 (450)
T PRK06116        447 VTMR  450 (450)
T ss_pred             hhcC
Confidence            8763

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.3e-42  Score=352.37  Aligned_cols=402  Identities=16%  Similarity=0.218  Sum_probs=270.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCCC-ccccC----------------CCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPALT-KGYLF----------------PLDKKPA  118 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l~-~~~l~----------------~~~~~~~  118 (497)
                      .++||+||||||||++||..|++.|+   +|+|||+.+.+.-   ++...+ +.++.                .......
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~   79 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKI   79 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence            35899999999999999999999998   8999998643221   111111 11000                0000000


Q ss_pred             CCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCCCCCC
Q 010917          119 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGY  193 (497)
Q Consensus       119 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g~~  193 (497)
                      ++..+....   -..+.......+++.||+++.+ ++..++.....+...+|  .++.||+||||||++|..+|.+++ +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-~  157 (471)
T PRK06467         80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-D  157 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-C
Confidence            000000000   0000001123345679999986 45545543333444455  478999999999999875554433 2


Q ss_pred             CCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCc
Q 010917          194 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  273 (497)
Q Consensus       194 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV  273 (497)
                      .+++..      .....+....+++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++...+++.|+++ |
T Consensus       158 ~~~v~~------~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v  229 (471)
T PRK06467        158 DPRIWD------STDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-F  229 (471)
T ss_pred             CCcEEC------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-e
Confidence            233332      2222222345789999999999999999999999999999999999986 8999999999999998 9


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcE
Q 010917          274 KFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI  346 (497)
Q Consensus       274 ~i~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~i  346 (497)
                      ++++++++++++..+++ + .+.+.+  +  +++++|.||+++|++||+++  ++.++++.+ +|+|.||+++||+.|+|
T Consensus       230 ~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~V  307 (471)
T PRK06467        230 NIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHI  307 (471)
T ss_pred             EEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCE
Confidence            99999999999854333 2 344433  2  46999999999999999985  467788775 57799999999999999


Q ss_pred             EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc---
Q 010917          347 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---  422 (497)
Q Consensus       347 ya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---  422 (497)
                      ||+|||+..+.          ....|..+|+.+|.+|++... .++...|+.  ..++..       +..+|....+   
T Consensus       308 yAiGDv~~~~~----------la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~ea~~  368 (471)
T PRK06467        308 FAIGDIVGQPM----------LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--AYTEPE-------VAWVGLTEKEAKE  368 (471)
T ss_pred             EEehhhcCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCc-------eeEEECCHHHHHh
Confidence            99999996432          445699999999999986432 234456653  222221       4445543221   


Q ss_pred             ----E-EEE-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHH
Q 010917          423 ----T-IEI-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE  481 (497)
Q Consensus       423 ----~-~~~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~  481 (497)
                          + ...           .+....+.+++++  +++|+|+++++.++.++... ..+++.+.+++ . ..++.|||++
T Consensus       369 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~  448 (471)
T PRK06467        369 EGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLH  448 (471)
T ss_pred             cCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChH
Confidence                0 000           0012346777664  48999999888877776544 45678888876 3 3357899999


Q ss_pred             HHHHHHHccCCcc
Q 010917          482 EALEIARAALPVE  494 (497)
Q Consensus       482 ~~~~~~~~~~~~~  494 (497)
                      |+++.|++++..+
T Consensus       449 e~~~~a~~~~~~~  461 (471)
T PRK06467        449 ESVGLAAEAFEGS  461 (471)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999999876543

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=5.4e-42  Score=349.26  Aligned_cols=391  Identities=18%  Similarity=0.248  Sum_probs=269.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCCC-ccccC--------------CC--CCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPALT-KGYLF--------------PL--DKKPAR  119 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l~-~~~l~--------------~~--~~~~~~  119 (497)
                      ++||+||||||||++||..++++|+   +|+|+|++. ..-.   +-..+ +.++.              ..  .....+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   77 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD   77 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence            4899999999999999999999998   899999853 2110   00011 10000              00  000000


Q ss_pred             CCCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          120 LPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       120 ~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                      +......   .-..+...+...+++.|++++.+ ++..+++....+. .+|+.+.||+||||||+.|. .|.++|.+   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~---  151 (446)
T TIGR01424        78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE---  151 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc---
Confidence            0000000   00000112334566789999886 7777776543343 45678999999999999986 45444422   


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                        ...+   ++........+++++|||+|++|+|+|..+++.|.+|+++++.+.+++. +++++...+.+.+++.||+++
T Consensus       152 --~~~~---~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~  225 (446)
T TIGR01424       152 --LGIT---SNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIH  225 (446)
T ss_pred             --ceec---hHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEE
Confidence              1111   2222222235789999999999999999999999999999999988875 789999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEecccc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  353 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~  353 (497)
                      +++++.+++..+++  ..+.+.+|+++++|.||+|+|.+||++.  +++++++.+ +|++.||+++||+.|||||+|||+
T Consensus       226 ~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~  303 (446)
T TIGR01424       226 PQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVT  303 (446)
T ss_pred             eCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccC
Confidence            99999999854333  2466778889999999999999999875  577888765 577999999999999999999999


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEeecCCC--------cE
Q 010917          354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ET  423 (497)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--------~~  423 (497)
                      ..+.          ....|..||+.++.||+++...  ++..+|+.   .|..+-      +..+|....        ..
T Consensus       304 ~~~~----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~---if~~p~------ia~vG~te~~a~~~~~~~~  364 (446)
T TIGR01424       304 DRIN----------LTPVAIMEATCFANTEFGNNPTKFDHDLIATA---VFSQPP------LGTVGLTEEEAREKFTGDI  364 (446)
T ss_pred             CCcc----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCeE---EeCCch------hEEEECCHHHHHhhcCCCE
Confidence            6432          4456999999999999974432  33456653   333321      334443221        00


Q ss_pred             -EEE-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHHH
Q 010917          424 -IEI-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEI  486 (497)
Q Consensus       424 -~~~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~  486 (497)
                       +..           ......+.++.++  +++|+|+++++..+.++... ..+++++.+++ . ...+.|||++|++..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  444 (446)
T TIGR01424       365 LVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVT  444 (446)
T ss_pred             EEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhh
Confidence             000           1112346777664  58999999888777776655 55678998887 3 445899999999886


Q ss_pred             H
Q 010917          487 A  487 (497)
Q Consensus       487 ~  487 (497)
                      +
T Consensus       445 ~  445 (446)
T TIGR01424       445 M  445 (446)
T ss_pred             c
Confidence            5

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=4.6e-42  Score=351.92  Aligned_cols=401  Identities=17%  Similarity=0.249  Sum_probs=273.2

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-CccccC---------------CC--CCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLF---------------PL--DKK  116 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l~---------------~~--~~~  116 (497)
                      ...++||+||||||||++||..|++.|.   +|+|||++..-.  .++... ++.++.               +.  ...
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~   79 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP   79 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence            3457899999999999999999999998   899999874211  000000 010000               00  000


Q ss_pred             CCCCCCCcccc---CCCCCC-CCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCC
Q 010917          117 PARLPGFHTCV---GSGGER-QTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK  189 (497)
Q Consensus       117 ~~~~~~~~~~~---~~~~~~-~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~  189 (497)
                      ..++..+....   -..+.. .....+++. +++++.+ ++..++....+|++.+|.  +++||+||||||+.|+ .|++
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~i  157 (468)
T PRK14694         80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPPV  157 (468)
T ss_pred             ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCCC
Confidence            00000000000   000000 011223333 7898885 788899888888888773  7999999999999987 4555


Q ss_pred             CCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHH
Q 010917          190 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  269 (497)
Q Consensus       190 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~  269 (497)
                      +|.+...+.+.   .+...   ....+++++|||+|++|+|+|..|+++|.+|+++++. ++++. +++++.+.+++.++
T Consensus       158 ~G~~~~~~~~~---~~~~~---l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~~-~~~~~~~~l~~~l~  229 (468)
T PRK14694        158 PGLAETPYLTS---TSALE---LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVLSQ-EDPAVGEAIEAAFR  229 (468)
T ss_pred             CCCCCCceEcc---hhhhc---hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCCCC-CCHHHHHHHHHHHH
Confidence            66432222221   22222   2234789999999999999999999999999999874 56654 78999999999999


Q ss_pred             HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch--hhcCCcccCCCEEecCCCCCCCCcEE
Q 010917          270 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIF  347 (497)
Q Consensus       270 ~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~iy  347 (497)
                      +.||++++++.+.+++.+ ++. ..+.+.++ ++++|.||+|+|.+||++++  ++++++.++|+|.||++++|+.|+||
T Consensus       230 ~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~Iy  306 (468)
T PRK14694        230 REGIEVLKQTQASEVDYN-GRE-FILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIY  306 (468)
T ss_pred             hCCCEEEeCCEEEEEEEc-CCE-EEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEE
Confidence            999999999999999854 332 23455444 69999999999999999874  56788777788999999999999999


Q ss_pred             EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc----
Q 010917          348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----  422 (497)
Q Consensus       348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~----  422 (497)
                      |+|||+..+.          ....|..+|+.+|.||++... .++..+|..  ..++..       +..+|....+    
T Consensus       307 A~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~  367 (468)
T PRK14694        307 AAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQAQ  367 (468)
T ss_pred             EEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHHc
Confidence            9999997543          345688999999999986432 234445543  222221       4455554321    


Q ss_pred             ---E-EEE-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHH
Q 010917          423 ---T-IEI-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE  482 (497)
Q Consensus       423 ---~-~~~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~  482 (497)
                         . ...           ......+.++.++  +++|+|+++++.++.++... ..+++.+.+++ . ...+.|||++|
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  447 (468)
T PRK14694        368 GYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVE  447 (468)
T ss_pred             CCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHH
Confidence               0 000           0112346777664  58999999877777776544 55678888887 3 34578999999


Q ss_pred             HHHHHHccCC
Q 010917          483 ALEIARAALP  492 (497)
Q Consensus       483 ~~~~~~~~~~  492 (497)
                      +++.|++.+.
T Consensus       448 ~~~~~~~~~~  457 (468)
T PRK14694        448 GLKLCAQTFT  457 (468)
T ss_pred             HHHHHHHhhh
Confidence            9999988653

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=5.9e-42  Score=350.33  Aligned_cols=401  Identities=20%  Similarity=0.274  Sum_probs=268.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-CccccCCCC-----C--CCCCCCCCccccC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYLFPLD-----K--KPARLPGFHTCVG  128 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~l~~~~-----~--~~~~~~~~~~~~~  128 (497)
                      ++||+||||||||++||..++++|+   +|+|||+.....-   ++... ++.++....     .  ...++ +......
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~-gi~~~~~   78 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHL-GIEVKPT   78 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhc-CccccCc
Confidence            4899999999999999999999998   8999997432211   11011 111000000     0  00000 0000000


Q ss_pred             CCCC--------------CCCHhHHHHcCcEEEeCCcEEEEecCCC-EEEECCCc--EEEeccEEeccCCCCCcCCCCCC
Q 010917          129 SGGE--------------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGK--LLKYGSLIVATGCTASRFPEKIG  191 (497)
Q Consensus       129 ~~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~g  191 (497)
                      .++.              .....++++.+++++.+. . .++.+.+ .+...+|+  ++.||+||||||++|..   ++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---ipg  153 (466)
T PRK06115         79 LNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---LPG  153 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---CCC
Confidence            0000              011223455678888763 3 3333322 33445553  69999999999998753   344


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                      ...++...+.    ++........+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++...+++.|++.
T Consensus       154 ~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~  228 (466)
T PRK06115        154 VTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTKQ  228 (466)
T ss_pred             CCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhc
Confidence            4444543332    3333333346899999999999999999999999999999999999885 7899999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEe-C--CCcEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCCCCcE
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKL-E--DGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGI  346 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~-~--~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~i  346 (497)
                      ||++++++++++++..+++....+.. .  +++++++|.|++++|++||++.  ++..++..+++++.||++++|+.|+|
T Consensus       229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~I  308 (466)
T PRK06115        229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGV  308 (466)
T ss_pred             CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCCE
Confidence            99999999999998643332222222 1  2357999999999999999885  45677777656688999999999999


Q ss_pred             EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc---
Q 010917          347 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---  422 (497)
Q Consensus       347 ya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---  422 (497)
                      ||+|||+..+.          ....|..||+.+|+||++... ..|..+|+..   |..+      .+..+|....+   
T Consensus       309 yA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~---~t~p------~ia~vGlte~~a~~  369 (466)
T PRK06115        309 WVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGVI---YTRP------EVATVGKTEEQLKA  369 (466)
T ss_pred             EEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---ECCc------ccEEeeCCHHHHHH
Confidence            99999997542          445699999999999986432 3455666532   3221      13445543221   


Q ss_pred             ----E-EE------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcH
Q 010917          423 ----T-IE------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSV  480 (497)
Q Consensus       423 ----~-~~------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~  480 (497)
                          + +.            .++ ...+.++.++  +++|+|+++++.++.++... ..+++.+.+++ . ...+.|||+
T Consensus       370 ~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~  448 (466)
T PRK06115        370 EGRAYKVGKFPFTANSRAKINHE-TEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTR  448 (466)
T ss_pred             CCCCEEEEEEecccChhhHhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCh
Confidence                1 00            111 1346777664  48999999877777775544 55678888886 3 335789999


Q ss_pred             HHHHHHHHccCCcc
Q 010917          481 EEALEIARAALPVE  494 (497)
Q Consensus       481 ~~~~~~~~~~~~~~  494 (497)
                      +|.++.|++.+..+
T Consensus       449 ~e~~~~a~~~~~~~  462 (466)
T PRK06115        449 SEALRQAAMNVEGW  462 (466)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999876554

>PLN02507 glutathione reductase

Probab=100.00  E-value=3.6e-41  Score=345.79  Aligned_cols=396  Identities=19%  Similarity=0.237  Sum_probs=273.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCC---CCCCCC-ccccCC--------C-CC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPY---ERPALT-KGYLFP--------L-DK  115 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~---------~~~~~---~~~~l~-~~~l~~--------~-~~  115 (497)
                      ...+||+||||||||+.||..+++.|.   +|+|||+.         ....-   .+-..+ +.++..        . ..
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~   99 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKN   99 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHh
Confidence            345899999999999999999999998   89999962         11110   000011 111000        0 00


Q ss_pred             CCCCCCCCccccCC-----------CCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCC
Q 010917          116 KPARLPGFHTCVGS-----------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCT  182 (497)
Q Consensus       116 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~  182 (497)
                      .-.+......+...           .+.......+...+|+++.+ ++..+++...++.+.+|+  .+.||+||||||+.
T Consensus       100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~  178 (499)
T PLN02507        100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR  178 (499)
T ss_pred             cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence            00000000000000           00001123345579999985 778888877788877775  57899999999999


Q ss_pred             CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHH
Q 010917          183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  262 (497)
Q Consensus       183 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~  262 (497)
                      |.. |.++|.+     ...+..+...+   ...+++++|||+|++|+|+|..++++|.+|+++++.+.+++. +++++..
T Consensus       179 p~~-p~ipG~~-----~~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~  248 (499)
T PLN02507        179 AQR-PNIPGKE-----LAITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRA  248 (499)
T ss_pred             CCC-CCCCCcc-----ceechHHhhhh---hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHH
Confidence            874 5444421     11222333222   234789999999999999999999999999999999988865 8999999


Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCC
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF  339 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~  339 (497)
                      .+.+.|+++||+++++++|++++..+ +.+ .+.+.+|+++++|.|++++|++||+++  +++++++.+ +|+|.||+++
T Consensus       249 ~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~  326 (499)
T PLN02507        249 VVARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS  326 (499)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC
Confidence            99999999999999999999998543 332 466778889999999999999999987  578888875 5779999999


Q ss_pred             CCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEee
Q 010917          340 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFG  417 (497)
Q Consensus       340 ~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g  417 (497)
                      ||+.|||||+|||+..+.          ....|..||+.++.||+++...  .+..+|+   ..|+++-      +..+|
T Consensus       327 ~Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~vG  387 (499)
T PLN02507        327 RTNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVVG  387 (499)
T ss_pred             cCCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEEe
Confidence            999999999999997432          3456999999999999875332  3444564   3444421      33344


Q ss_pred             cCCC--------cE-EE-----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-h
Q 010917          418 DNVG--------ET-IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-A  472 (497)
Q Consensus       418 ~~~~--------~~-~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~  472 (497)
                      ....        .. +.           .+.....+.++.++  +++|+|+++++.++.++... ..+++.+.+++ . .
T Consensus       388 lte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~  467 (499)
T PLN02507        388 LSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDS  467 (499)
T ss_pred             CCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence            3221        00 00           01112346677664  48999999877777665544 55678898886 3 4


Q ss_pred             hhcCCCcHHHHHHHHH
Q 010917          473 KLQQASSVEEALEIAR  488 (497)
Q Consensus       473 ~~~~~~~~~~~~~~~~  488 (497)
                      .++.|||++|++..++
T Consensus       468 ~~~~hPt~~E~~~~~~  483 (499)
T PLN02507        468 TVGIHPSAAEEFVTMR  483 (499)
T ss_pred             cCcCCCChHHHHHHHH
Confidence            4689999999998875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.5e-41  Score=346.30  Aligned_cols=396  Identities=18%  Similarity=0.220  Sum_probs=270.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCCccccCCCCCCCCCCCCCccc---cCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPLDKKPARLPGFHTC---VGSGG  131 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~----~~~l~~~~l~~~~~~~~~~~~~~~~---~~~~~  131 (497)
                      +.+||+||||||||++||..|+++|+   +|+|||+++.....    +...+...+........++......   ....+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~   78 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFL   78 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            35899999999999999999999998   89999997532110    0001100000000000011000000   00000


Q ss_pred             CCCCHhHH-HHcCcEEEeCCcEEEEecCCCEEEECCCc-EEEeccEEeccCCCCCcCCCCCCCC-CCcEEEecCHHHHHH
Q 010917          132 ERQTPEWY-KEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADADA  208 (497)
Q Consensus       132 ~~~~~~~~-~~~~v~~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lvlAtG~~~~~~~~~~g~~-~~gv~~~~~~~~~~~  208 (497)
                      .......+ +..+++++.+ ++..++.....+.+.++. ++.||+||||||+.|. .|.++|.+ .++++.      +..
T Consensus        79 ~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~------~~~  150 (441)
T PRK08010         79 RNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYD------STG  150 (441)
T ss_pred             HHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEEC------hhH
Confidence            00001122 2348998875 677777766667776775 6999999999999987 45566642 345443      233


Q ss_pred             HHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          209 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       209 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                      +......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++...+.+.++++||++++++++++++.. 
T Consensus       151 ~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-  228 (441)
T PRK08010        151 LLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERISHH-  228 (441)
T ss_pred             hhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-
Confidence            3333345789999999999999999999999999999999998876 68899999999999999999999999999854 


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917          289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  365 (497)
Q Consensus       289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~  365 (497)
                      ++.+ .+.++++ ++++|.|++|+|.+||+++  +++++++.+ +|+|.||+++||+.|||||+|||+..+.        
T Consensus       229 ~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~--------  298 (441)
T PRK08010        229 ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ--------  298 (441)
T ss_pred             CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--------
Confidence            3333 3455555 5899999999999999876  467788765 5789999999999999999999998543        


Q ss_pred             cccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E-EE---------
Q 010917          366 VEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-IE---------  425 (497)
Q Consensus       366 ~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~-~~---------  425 (497)
                        ....|..+|+.++.+|++...   ..+..+|..  ..++..       +..+|....+       . ..         
T Consensus       299 --~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~  367 (441)
T PRK08010        299 --FTYISLDDYRIVRDELLGEGKRSTDDRKNVPYS--VFMTPP-------LSRVGMTEEQARESGADIQVVTLPVAAIPR  367 (441)
T ss_pred             --chhHHHHHHHHHHHHHcCCCCcccCccCCCCEE--EECCCC-------ceeeeCCHHHHHHcCCCeEEEEEecCcChh
Confidence              223488899999999986322   133445642  222222       3444543211       0 00         


Q ss_pred             ---EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHHHHHc
Q 010917          426 ---IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIARA  489 (497)
Q Consensus       426 ---~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  489 (497)
                         .++ ...+.++.++  +++|+|+++++.++.++... ..+++++.+++ . ..++.|||++|.+..|+.
T Consensus       368 ~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  438 (441)
T PRK08010        368 ARVMND-TRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS  438 (441)
T ss_pred             hhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence               111 1336777664  59999999878777776655 45678888876 2 445889999999998864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2.9e-41  Score=346.68  Aligned_cols=403  Identities=20%  Similarity=0.284  Sum_probs=270.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCC-ccccC------------CC----CCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALT-KGYLF------------PL----DKKPAR  119 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~l~------------~~----~~~~~~  119 (497)
                      ..+||+||||||||++||..|+++|+   +|+|||++....  -.+...+ +.++.            ..    .....+
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD   79 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            46899999999999999999999998   899999863211  0000011 11000            00    000000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecC-------CCEEEECCC--cEEEeccEEeccCCCCCcCC
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRFP  187 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~  187 (497)
                      +.......   -..+.......+++.+++++.+ ++..++..       ...+.+.+|  .++.||+||||||+.|..+|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p  158 (472)
T PRK05976         80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELP  158 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCC
Confidence            00000000   0000001123456679999986 67778876       456666676  57999999999999986443


Q ss_pred             CCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHH
Q 010917          188 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  267 (497)
Q Consensus       188 ~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~  267 (497)
                         +....+...+ +..+   .......+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       159 ---~~~~~~~~~~-~~~~---~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~  230 (472)
T PRK05976        159 ---GLPFDGEYVI-SSDE---ALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARL  230 (472)
T ss_pred             ---CCCCCCceEE-cchH---hhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHH
Confidence               2223332222 1122   2222234789999999999999999999999999999999998875 789999999999


Q ss_pred             HHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCCC
Q 010917          268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRM  343 (497)
Q Consensus       268 l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~  343 (497)
                      ++++||++++++++++++..+++.+..+.+.+|  +++++|.||+|+|.+|+++.  ++..++..++|++.||++++|+.
T Consensus       231 l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~  310 (472)
T PRK05976        231 LKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKE  310 (472)
T ss_pred             HHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCC
Confidence            999999999999999997421333434455566  36999999999999999875  45666665668899999999999


Q ss_pred             CcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeeeccccCCCCcceeeEEeecCCC
Q 010917          344 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG  421 (497)
Q Consensus       344 ~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  421 (497)
                      |+|||+|||+..+.          .+..|..+|+.++.+|++.....++  ..|.  ...++..       +..+|....
T Consensus       311 ~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-------~a~vG~te~  371 (472)
T PRK05976        311 RHIYAIGDVIGEPQ----------LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPE-------VASVGLTEE  371 (472)
T ss_pred             CCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCc-------eEEEeCCHH
Confidence            99999999986432          4556999999999999864323333  3443  2222221       333443321


Q ss_pred             -------cEE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCC-h-hhhcCC
Q 010917          422 -------ETI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD-K-AKLQQA  477 (497)
Q Consensus       422 -------~~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~  477 (497)
                             ++. ..-           +....+.++.++  +++|+|+++++.++.++.. +..+++.+.+++ . ..++.|
T Consensus       372 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h  451 (472)
T PRK05976        372 EAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPH  451 (472)
T ss_pred             HHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccC
Confidence                   000 000           012346666664  4899999987777776554 455678888886 3 335789


Q ss_pred             CcHHHHHHHHHccCC
Q 010917          478 SSVEEALEIARAALP  492 (497)
Q Consensus       478 ~~~~~~~~~~~~~~~  492 (497)
                      ||++|.++.|++++.
T Consensus       452 Pt~~e~~~~~~~~~~  466 (472)
T PRK05976        452 PTLSEAIQEAALAAD  466 (472)
T ss_pred             CChHHHHHHHHHHhh
Confidence            999999999987653

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=2.9e-41  Score=347.37  Aligned_cols=410  Identities=16%  Similarity=0.240  Sum_probs=269.6

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCCccccCCCCCC----------------CC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALTKGYLFPLDKK----------------PA  118 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~~~~l~~~~~~----------------~~  118 (497)
                      ...++||+||||||||++||..+++.|.   +|+|||++..-.  -++-..+...+......                ..
T Consensus        45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~  121 (561)
T PTZ00058         45 PRMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSF  121 (561)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCcc
Confidence            3456899999999999999999999997   899999873211  01111111111100000                00


Q ss_pred             CCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecC--------------------CCEE------EECCCcE
Q 010917          119 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIE--------------------KQTL------ITNSGKL  169 (497)
Q Consensus       119 ~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~--------------------~~~v------~~~~g~~  169 (497)
                      +++.......   ........+.+++.||+++.+.. .-.+..                    ..++      ..++|++
T Consensus       122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a-~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~  200 (561)
T PTZ00058        122 NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKG-SLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV  200 (561)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence            0000000000   00011122345667999988643 112211                    0112      2346678


Q ss_pred             EEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          170 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       170 i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      +.||+||||||+.|. .|.++|.+  .+.      +++.+... ..+++++|||+|++|+|+|..|.++|.+||++++.+
T Consensus       201 i~ad~lVIATGS~P~-~P~IpG~~--~v~------ts~~~~~l-~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~  270 (561)
T PTZ00058        201 IEGKNILIAVGNKPI-FPDVKGKE--FTI------SSDDFFKI-KEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN  270 (561)
T ss_pred             EECCEEEEecCCCCC-CCCCCCce--eEE------EHHHHhhc-cCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence            999999999999987 45555422  111      23333332 338999999999999999999999999999999999


Q ss_pred             cchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC-CcEEEcCEEEEeccCcCCCcchh--hcCC
Q 010917          250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE--RVGL  326 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~~D~vv~a~G~~p~~~~~~--~~gl  326 (497)
                      ++++. +++++.+.+.+.|+++||+++++..+.+++..+++.+. +.+.+ ++++++|.|++++|++|+++++.  ..++
T Consensus       271 ~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~  348 (561)
T PTZ00058        271 RLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI  348 (561)
T ss_pred             ccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccce
Confidence            98864 79999999999999999999999999999864333332 33334 45799999999999999998763  3444


Q ss_pred             cccCCCEEecCCCCCCCCcEEEeccccccCCc-----------------------cCCccc-ccccHHHHHHHHHHHHHH
Q 010917          327 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQHCIKA  382 (497)
Q Consensus       327 ~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~-----------------------~~g~~~-~~~~~~~A~~~g~~~a~~  382 (497)
                      ..++|+|.||+++||+.|+|||+|||+..+..                       ..+... .......|..||+.+|.|
T Consensus       349 ~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~n  428 (561)
T PTZ00058        349 KTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADR  428 (561)
T ss_pred             ecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHH
Confidence            45568899999999999999999999984321                       111111 244667799999999999


Q ss_pred             HhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc---------EEE-------------E---ccCCCcEEE
Q 010917          383 LLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-------------I---GNFDPKIAT  435 (497)
Q Consensus       383 i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~-------------~---~~~~~~~~~  435 (497)
                      |++...  ..+..+|..   .|..+-      +..+|....+         ...             .   +.....+.+
T Consensus       429 i~g~~~~~~~~~~ip~~---vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  499 (561)
T PTZ00058        429 LFGPFSRTTNYKLIPSV---IFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLK  499 (561)
T ss_pred             HhCCCCcccCCCCCCeE---EeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEE
Confidence            997422  335556653   333210      2233332110         000             0   011234666


Q ss_pred             EEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC--hhhhcCCCcHHHHHHHHHccC
Q 010917          436 FWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALEIARAAL  491 (497)
Q Consensus       436 ~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  491 (497)
                      ++++  +++|+|+++++.++.++... ..+++++.+++  ...++.|||++|++..++.++
T Consensus       500 li~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~  560 (561)
T PTZ00058        500 LVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM  560 (561)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence            6664  58999999888777776544 55678888886  244588999999999988764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=3.4e-42  Score=333.50  Aligned_cols=308  Identities=23%  Similarity=0.336  Sum_probs=240.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      .+++|||||||++|+.+|..|.+.. ++.+|||||+.+++.|. |.+.. .... ......+           ...+.+.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~e-va~g-~l~~~~i-----------~~p~~~~   66 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYE-VATG-TLSESEI-----------AIPLRAL   66 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhh-hhcC-CCChhhe-----------eccHHHH
Confidence            4689999999999999999999985 25689999999998876 44432 1111 1111111           1234566


Q ss_pred             HHHcC-cEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc---
Q 010917          139 YKEKG-IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---  214 (497)
Q Consensus       139 ~~~~~-v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~---  214 (497)
                      +++.+ +++..+ +|++||+++++|+++++..+.||+||+|+|+.+.. +.++|. .+..+.+++++++.+++..+.   
T Consensus        67 ~~~~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~f  143 (405)
T COG1252          67 LRKSGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAF  143 (405)
T ss_pred             hcccCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHH
Confidence            66454 999984 99999999999999998889999999999999874 444553 233456778888866655442   


Q ss_pred             -----cC-----CeEEEEcCCHHHHHHHHHHHhCC-------------CcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          215 -----KA-----KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       215 -----~~-----~~vvVvG~G~~g~e~A~~l~~~g-------------~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                           ..     .+++|+|||++|+|+|..|+++-             .+|+++++.+++++. ++++++++.++.|+++
T Consensus       144 e~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~  222 (405)
T COG1252         144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKL  222 (405)
T ss_pred             HHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHC
Confidence                 12     26999999999999999987542             389999999999985 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeccCcCCCcchhh-cCCccc-CCCEEecCCCCC-CCCcEE
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIF  347 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vv~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t-~~~~iy  347 (497)
                      ||++++++.|++++++      .|++++|+ +|++|++||++|.+++ +++++ .+++.+ .|++.||+++++ ++|+||
T Consensus       223 GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IF  295 (405)
T COG1252         223 GVEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIF  295 (405)
T ss_pred             CCEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeE
Confidence            9999999999999864      68888888 4999999999999998 77888 477766 589999999998 899999


Q ss_pred             EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCce
Q 010917          348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF  397 (497)
Q Consensus       348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~  397 (497)
                      |+|||+.....    ...+...+.|.+||..+|+||..... ..+..||.
T Consensus       296 a~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~-g~~l~~f~  340 (405)
T COG1252         296 AAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLK-GKPLKPFK  340 (405)
T ss_pred             EEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhc-CCCCCCCc
Confidence            99999987764    11133667899999999999975322 23344553

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=1.6e-41  Score=347.22  Aligned_cols=400  Identities=20%  Similarity=0.288  Sum_probs=274.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCCccccCCC------------C-------CCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL------------D-------KKP  117 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~---~~~~~l~~~~l~~~------------~-------~~~  117 (497)
                      +++|+|||||++|+.||..++++|.   +|+|||++..-.   ...+.-++.++...            .       ...
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   77 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR   77 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence            3689999999999999999999997   899999875211   00010011111000            0       000


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEe--cCCC--EEEECCCc--EEEeccEEeccCCCCCcCCC
Q 010917          118 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSID--IEKQ--TLITNSGK--LLKYGSLIVATGCTASRFPE  188 (497)
Q Consensus       118 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~--~v~~~~g~--~i~~d~lvlAtG~~~~~~~~  188 (497)
                      .++.......   .........+++++.+++++.+ ++..++  .+.+  .+.+.+|+  ++.||+||||||+.|..+| 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p-  155 (466)
T PRK07845         78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILP-  155 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCC-
Confidence            0000000000   0000012334566789999986 555533  3334  45555665  6999999999999987433 


Q ss_pred             CCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHH
Q 010917          189 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY  268 (497)
Q Consensus       189 ~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l  268 (497)
                      .++.+.+.+++..++.+      ....+++++|||+|.+|+|+|..|+++|.+|+++++.+++++. +++++...+.+.|
T Consensus       156 ~~~~~~~~v~~~~~~~~------~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L  228 (466)
T PRK07845        156 TAEPDGERILTWRQLYD------LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVF  228 (466)
T ss_pred             CCCCCCceEEeehhhhc------ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHH
Confidence            22222334544433322      1234689999999999999999999999999999999999886 7899999999999


Q ss_pred             HHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCc
Q 010917          269 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG  345 (497)
Q Consensus       269 ~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~  345 (497)
                      +++||++++++++.+++..++ .+ .+.+.+|+++++|.|++++|++||+++  +++++++.+ +|+|.||++++|+.||
T Consensus       229 ~~~gV~i~~~~~v~~v~~~~~-~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~  306 (466)
T PRK07845        229 ARRGMTVLKRSRAESVERTGD-GV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPG  306 (466)
T ss_pred             HHCCcEEEcCCEEEEEEEeCC-EE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCC
Confidence            999999999999999975433 33 466778889999999999999999986  678888865 5779999999999999


Q ss_pred             EEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEeecCCC--
Q 010917          346 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--  421 (497)
Q Consensus       346 iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--  421 (497)
                      |||+|||+..+.          .+..|..||+.++.++++....  .+..+|.   ..|..+      .+..+|....  
T Consensus       307 IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p------~~a~vGlte~~a  367 (466)
T PRK07845        307 IYAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRP------EIATVGVSQAAI  367 (466)
T ss_pred             EEEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCC------cceeecCCHHHH
Confidence            999999997532          4566999999999999964322  3344554   333211      0333443221  


Q ss_pred             -----c--EE-----------EEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCC
Q 010917          422 -----E--TI-----------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQAS  478 (497)
Q Consensus       422 -----~--~~-----------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~  478 (497)
                           +  ..           ..+. ...+.++.++  +++|+|+++++.++.++... ..+++++.+++ . ...+.||
T Consensus       368 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP  446 (466)
T PRK07845        368 DSGEVPARTVMLPLATNPRAKMSGL-RDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYP  446 (466)
T ss_pred             HhCCCceEEEEEecccCchhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCC
Confidence                 0  00           0111 1346777664  58999999888777765544 45678888886 3 3457899


Q ss_pred             cHHHHHHHHHccCCc
Q 010917          479 SVEEALEIARAALPV  493 (497)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (497)
                      |++|+++.|++.+..
T Consensus       447 t~~e~~~~~~~~~~~  461 (466)
T PRK07845        447 SLSGSITEAARRLMA  461 (466)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999876543

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=3.7e-41  Score=345.47  Aligned_cols=398  Identities=21%  Similarity=0.266  Sum_probs=271.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-Ccccc---------CCC------CCCCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYL---------FPL------DKKPARLPG  122 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l---------~~~------~~~~~~~~~  122 (497)
                      +||+||||||||++||..|+++|+   +|+|||+++...  .++-.. ++.++         ...      .....++..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~   77 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE   77 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence            589999999999999999999998   899999875211  000000 00000         000      000000000


Q ss_pred             Cccc---cCCCC-CCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc-EEEeccEEeccCCCCCcCCCCCCCCCCcE
Q 010917          123 FHTC---VGSGG-ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGV  197 (497)
Q Consensus       123 ~~~~---~~~~~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lvlAtG~~~~~~~~~~g~~~~gv  197 (497)
                      ....   ..... .......+++.+++++.+ ++..+  +.+++.+.++. .+.||+||||||+.|. .|.++|.+..++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~  153 (463)
T TIGR02053        78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGY  153 (463)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCce
Confidence            0000   00000 011334567789999876 44433  45778887754 6899999999999987 455666544443


Q ss_pred             EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEc
Q 010917          198 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                      .+.      +.+......+++++|||+|.+|+|+|..|+++|.+|+++++.+++++. +++++...+++.+++.||++++
T Consensus       154 ~~~------~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~  226 (463)
T TIGR02053       154 LTS------EEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVT  226 (463)
T ss_pred             ECc------hhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEEc
Confidence            332      222222234689999999999999999999999999999999999875 7899999999999999999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEeccCcCCCc-c-hhhcCCccc-CCCEEecCCCCCCCCcEEEecc
Q 010917          278 GASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  351 (497)
Q Consensus       278 ~~~v~~i~~~~~~~v~~v~~~---~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD  351 (497)
                      +++|++++.++++.  .+.+.   +++++++|.||+|+|++|+++ + ++..+++.+ +|+|.||+++||+.|+|||+||
T Consensus       227 ~~~V~~i~~~~~~~--~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD  304 (463)
T TIGR02053       227 SAQVKAVSVRGGGK--IITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGD  304 (463)
T ss_pred             CcEEEEEEEcCCEE--EEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeee
Confidence            99999998643322  23332   236799999999999999998 4 677788765 5779999999999999999999


Q ss_pred             ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEeecCCCc-------
Q 010917          352 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------  422 (497)
Q Consensus       352 ~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------  422 (497)
                      |+..+.          .+..|..||+.+|.||++....  ++..+|+  ...++.+       +..+|....+       
T Consensus       305 ~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~~  365 (463)
T TIGR02053       305 VTGGLQ----------LEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPA-------VASVGLTEAEAQKAGIE  365 (463)
T ss_pred             cCCCcc----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCc-------eEEEeCCHHHHHhcCCC
Confidence            998532          4556999999999999864232  2334553  2222221       4455543210       


Q ss_pred             E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHH
Q 010917          423 T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE  485 (497)
Q Consensus       423 ~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~  485 (497)
                      . ...-           +....+.++.++  +++|+|+++++.++.++... ..+++.+.+++ . .....|||++|.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~  445 (463)
T TIGR02053       366 CDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLK  445 (463)
T ss_pred             eEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHH
Confidence            0 0000           011346777664  58999999988887776655 45678888876 3 33468999999999


Q ss_pred             HHHccCCc
Q 010917          486 IARAALPV  493 (497)
Q Consensus       486 ~~~~~~~~  493 (497)
                      .|++.+..
T Consensus       446 ~a~~~~~~  453 (463)
T TIGR02053       446 LAAQTFYR  453 (463)
T ss_pred             HHHHHhhc
Confidence            99987643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.8e-41  Score=346.22  Aligned_cols=397  Identities=23%  Similarity=0.299  Sum_probs=262.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-CccccCCCC-----C-CCCCCCCCccccCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLFPLD-----K-KPARLPGFHTCVGSG  130 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l~~~~-----~-~~~~~~~~~~~~~~~  130 (497)
                      ++||+||||||||++||..|+++|.   +|+|||++....  ...... ++.++....     . ....+ +.......+
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~-gi~~~~~~~   79 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTF-GISGEVTFD   79 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhc-CCCcCcccC
Confidence            5899999999999999999999998   899999863211  000000 111110000     0 00000 000000000


Q ss_pred             C--------------CCCCHhHHHHcCcEEEeCCcEEEEecCCCEE--EECCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 010917          131 G--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSG--KLLKYGSLIVATGCTASRFPEKIGG  192 (497)
Q Consensus       131 ~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g~  192 (497)
                      +              .......++..+|+.+.+ +..-+  +.+++  ...+|  .++.||+||||||+.|..+   |+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~  153 (466)
T PRK07818         80 YGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGT  153 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCC
Confidence            0              000011122346666553 22222  33444  33444  3689999999999998743   343


Q ss_pred             CC-CcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          193 YL-PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       193 ~~-~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                      +. ..+.+.   .+  .+ .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++...+.+.|+++
T Consensus       154 ~~~~~v~~~---~~--~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~  226 (466)
T PRK07818        154 SLSENVVTY---EE--QI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKL  226 (466)
T ss_pred             CCCCcEEch---HH--Hh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHC
Confidence            22 223322   11  11 11235789999999999999999999999999999999999986 7899999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCC
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP  344 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~  344 (497)
                      ||+++++++|++++.. ++.+ .+.+.  +|  +++++|.|++|+|++||+++  +++.++..+ +|+|.||+++||+.|
T Consensus       227 gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p  304 (466)
T PRK07818        227 GVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVP  304 (466)
T ss_pred             CCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCC
Confidence            9999999999999854 2322 33333  56  47999999999999999886  578888764 577999999999999


Q ss_pred             cEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeeeccccCCCCcceeeEEeecCCC
Q 010917          345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  421 (497)
Q Consensus       345 ~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  421 (497)
                      +|||+|||+..+.          .+..|..||+.+|.||++....   .+..+|..   .|..+      .+.++|....
T Consensus       305 ~IyAiGD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~  365 (466)
T PRK07818        305 HIYAIGDVTAKLQ----------LAHVAEAQGVVAAETIAGAETLELGDYRMMPRA---TFCQP------QVASFGLTEE  365 (466)
T ss_pred             CEEEEeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCCccCccCCCCeE---EECCC------CeEEEeCCHH
Confidence            9999999987432          4566999999999999964322   44556652   22211      1444554322


Q ss_pred             c-------E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCC
Q 010917          422 E-------T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQA  477 (497)
Q Consensus       422 ~-------~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~  477 (497)
                      +       . ...-           +-...+.++.++  +++|+|+++++.++.++... ..+++.+.+++ . ..++.|
T Consensus       366 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h  445 (466)
T PRK07818        366 QAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTH  445 (466)
T ss_pred             HHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCC
Confidence            1       0 0000           011346677664  48999999878777776554 45678888886 3 345789


Q ss_pred             CcHHHHHHHHHccCCcc
Q 010917          478 SSVEEALEIARAALPVE  494 (497)
Q Consensus       478 ~~~~~~~~~~~~~~~~~  494 (497)
                      ||++|+++.|++.+..+
T Consensus       446 Pt~~e~~~~~~~~~~~~  462 (466)
T PRK07818        446 PTLSEALKEAFHGLAGH  462 (466)
T ss_pred             CchHHHHHHHHHHhhcC
Confidence            99999999999877654

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.1e-41  Score=350.91  Aligned_cols=393  Identities=20%  Similarity=0.267  Sum_probs=272.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC------CC-CCCCCCCCCcc-----ccC---------------
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AY-APYERPALTKG-----YLF---------------  111 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~------~~-~~~~~~~l~~~-----~l~---------------  111 (497)
                      ..+||+||||||||+.||..++++|.   +|+|||+.      +. ..+....+..|     .+.               
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~  154 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF  154 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence            35899999999999999999999998   89999962      10 01111111111     000               


Q ss_pred             CCC---CCCCCCCCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCc
Q 010917          112 PLD---KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       112 ~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ...   ....++......   .-..+...+...+++.|++++.+ ++..+++  +++.+ +|+.+.||+||||||++|. 
T Consensus       155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~-  229 (558)
T PLN02546        155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPF-  229 (558)
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCC-
Confidence            000   000011000000   00000112334456679999985 6666665  45665 5678999999999999987 


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917          186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  265 (497)
Q Consensus       186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~  265 (497)
                      .|.++|     +...   .+++.+......+++++|||+|++|+|+|..|.++|.+|+++++.+.+++. +++++...++
T Consensus       230 ~P~IpG-----~~~v---~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~  300 (558)
T PLN02546        230 IPDIPG-----IEHA---IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRDFVA  300 (558)
T ss_pred             CCCCCC-----hhhc---cCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHHHHH
Confidence            455444     2222   234444444456899999999999999999999999999999999988874 8999999999


Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCC
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTR  342 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~  342 (497)
                      +.|+++||++++++++.+++..+++.+ .+.+.+++.+.+|.|++++|++||+++  +++++++.+ +|+|.||+++||+
T Consensus       301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts  379 (558)
T PLN02546        301 EQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS  379 (558)
T ss_pred             HHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC
Confidence            999999999999999999986444433 455566655669999999999999986  578888875 5779999999999


Q ss_pred             CCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCC
Q 010917          343 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV  420 (497)
Q Consensus       343 ~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~  420 (497)
                      +|+|||+|||+..+.          .+..|..||+.+|.||++...  ..|..+|+   ..|..+-      +..+|...
T Consensus       380 ~p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGlte  440 (558)
T PLN02546        380 VPSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGLTE  440 (558)
T ss_pred             CCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccCCH
Confidence            999999999997532          455699999999999997442  24556775   3554421      22333322


Q ss_pred             Cc-------E-E-----------EEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcC
Q 010917          421 GE-------T-I-----------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQ  476 (497)
Q Consensus       421 ~~-------~-~-----------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~  476 (497)
                      .+       + +           ..+.....+.++.++  +++|+|+++++.++.++... ..+++++.+++ . ..++.
T Consensus       441 ~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~  520 (558)
T PLN02546        441 EQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGI  520 (558)
T ss_pred             HHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccC
Confidence            10       0 0           011112346777664  58999999888877776544 55679998887 3 44589


Q ss_pred             CCcHHHHHHHHH
Q 010917          477 ASSVEEALEIAR  488 (497)
Q Consensus       477 ~~~~~~~~~~~~  488 (497)
                      |||+.|.+..++
T Consensus       521 hPT~~E~~~~~~  532 (558)
T PLN02546        521 HPTAAEEFVTMR  532 (558)
T ss_pred             CCChHHHHHHHh
Confidence            999999998886

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=6e-40  Score=333.56  Aligned_cols=392  Identities=20%  Similarity=0.274  Sum_probs=267.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-Ccccc--------------CCC--CCCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYL--------------FPL--DKKPARLP  121 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l--------------~~~--~~~~~~~~  121 (497)
                      +|++||||||+|.+||..  +.|.   +|+|||++..-.  .++-.. ++.++              +..  .....++.
T Consensus         2 yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   76 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP   76 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence            799999999999998865  4576   899999864211  111111 11100              000  00000110


Q ss_pred             CCcccc---CCCCCC-CCHhH-HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          122 GFHTCV---GSGGER-QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       122 ~~~~~~---~~~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                      ......   ...+.. ....+ ++..|++++.+. ..-+  +.++|.+.+|+.+.||+||||||++|. .|.+++.+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~~  152 (451)
T PRK07846         77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVR  152 (451)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCcc
Confidence            000000   000001 12233 567789998863 3333  578898888888999999999999997 45555533222


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                      +.   +..+...   ....+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+.+.+ +.||+++
T Consensus       153 ~~---~~~~~~~---l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~~v~i~  224 (451)
T PRK07846        153 YH---TSDTIMR---LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SKRWDVR  224 (451)
T ss_pred             EE---chHHHhh---hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hcCeEEE
Confidence            22   2223222   2235789999999999999999999999999999999998864 7889888877654 5789999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch--hhcCCccc-CCCEEecCCCCCCCCcEEEecccc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  353 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~  353 (497)
                      +++++++++.. ++.+ .+.+.+|+++++|.|++|+|++||++++  ++++++.+ +|++.||+++||+.|||||+|||+
T Consensus       225 ~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~  302 (451)
T PRK07846        225 LGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVS  302 (451)
T ss_pred             eCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecC
Confidence            99999999854 3333 4667788899999999999999999884  67888874 577999999999999999999999


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E
Q 010917          354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T  423 (497)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~  423 (497)
                      ..+.          ....|..||+.+++||++...   ..+..+|+.   .|..+      .+..+|....+       +
T Consensus       303 ~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~---if~~p------~ia~vGlte~~a~~~g~~~  363 (451)
T PRK07846        303 SPYQ----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAA---VFTHP------QIASVGLTENEARAAGLDI  363 (451)
T ss_pred             CCcc----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeE---EECCC------CcEeEeCCHHHHHhcCCCE
Confidence            7542          334589999999999986422   245566764   23211      13344543221       0


Q ss_pred             E-E------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-hhh--hcCCCcHHHHH
Q 010917          424 I-E------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEEAL  484 (497)
Q Consensus       424 ~-~------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~~  484 (497)
                      . .            .++ ...+.++.++  +++|+|+++++.++.++... ..+++++.+++ ...  ...|||++|++
T Consensus       364 ~~~~~~~~~~~~~~~~~~-~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~  442 (451)
T PRK07846        364 TVKVQNYGDVAYGWAMED-TTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVV  442 (451)
T ss_pred             EEEEEecCcchhhhhCCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHH
Confidence            0 0            011 1346677664  48999999878777765544 55678998886 443  35899999999


Q ss_pred             HHHHccC
Q 010917          485 EIARAAL  491 (497)
Q Consensus       485 ~~~~~~~  491 (497)
                      +.|++.+
T Consensus       443 ~~a~~~~  449 (451)
T PRK07846        443 ENALLGL  449 (451)
T ss_pred             HHHHHhc
Confidence            9998764

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.2e-40  Score=339.29  Aligned_cols=393  Identities=17%  Similarity=0.207  Sum_probs=262.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CC---CCCCCCccccCCCCCCCCCCCCCcccc---CCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PY---ERPALTKGYLFPLDKKPARLPGFHTCV---GSGGE  132 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~---~~~~~  132 (497)
                      .+||+||||||||++||..|+++|+   +|+|||+++.. ..   .....+...+........++.......   .....
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLR   79 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999997   89999998632 11   000011101100000000110000000   00000


Q ss_pred             CCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC---CcEEEeccEEeccCCCCCcCCCCCCC-CCCcEEEecCHHHHHH
Q 010917          133 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADA  208 (497)
Q Consensus       133 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---g~~i~~d~lvlAtG~~~~~~~~~~g~-~~~gv~~~~~~~~~~~  208 (497)
                      ....+.+.+.+|+++.++ +..  .+.+++.+..   ...+.||+||||||++|+. |.++|. +.+++++      +..
T Consensus        80 ~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~------~~~  149 (438)
T PRK07251         80 GKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYD------STG  149 (438)
T ss_pred             HHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEc------hHH
Confidence            112244567789988763 333  3456665543   2468999999999999874 555563 2233333      333


Q ss_pred             HHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          209 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       209 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                      +......+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. .++++...+.+.+++.||++++++++++++.. 
T Consensus       150 ~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-  227 (438)
T PRK07251        150 IQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKND-  227 (438)
T ss_pred             HhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-
Confidence            3333345789999999999999999999999999999999999876 68889999999999999999999999999853 


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917          289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  365 (497)
Q Consensus       289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~  365 (497)
                      ++.+ .+. .+++++++|.||+|+|.+|+.+.  ++..++..+ +|++.||+++||+.|||||+|||+..+.        
T Consensus       228 ~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~--------  297 (438)
T PRK07251        228 GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ--------  297 (438)
T ss_pred             CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--------
Confidence            3332 233 45678999999999999999876  345666654 5779999999999999999999997543        


Q ss_pred             cccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E----EEEc----
Q 010917          366 VEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T----IEIG----  427 (497)
Q Consensus       366 ~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~----~~~~----  427 (497)
                        ....|..+++.++.++.+...   ..+..+|+.  ..++..       +..+|....+       .    ....    
T Consensus       298 --~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~  366 (438)
T PRK07251        298 --FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAMPR  366 (438)
T ss_pred             --cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcchh
Confidence              223477889999998886432   123345543  222221       3344433210       0    0000    


Q ss_pred             ----cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHHHHH
Q 010917          428 ----NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR  488 (497)
Q Consensus       428 ----~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  488 (497)
                          .....+.+++++  +++|+|+++++.++.++... ..+++++.+++ . ..++.|||++|+++.+-
T Consensus       367 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  436 (438)
T PRK07251        367 AHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF  436 (438)
T ss_pred             hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence                001236677664  48999999888777776654 55678888876 2 34578999999998763

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=2.4e-40  Score=347.76  Aligned_cols=399  Identities=19%  Similarity=0.257  Sum_probs=268.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCC-ccccCC------CCCCCCCCCCCcccc-C
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALT-KGYLFP------LDKKPARLPGFHTCV-G  128 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~l~~------~~~~~~~~~~~~~~~-~  128 (497)
                      ..+||+||||||||++||..|++.|.   +|+|||++..-.  ..+...+ +.++..      ......+ .+..... .
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~-~g~~~~~~~  172 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFD-GGIAATVPT  172 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCcceeeccccCccccHHHHHHHHHHHHHhccccc-CCccCCCCc
Confidence            46899999999999999999999997   899999873110  0010011 100000      0000000 0000000 0


Q ss_pred             CCC---C------------CCCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCCC
Q 010917          129 SGG---E------------RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI  190 (497)
Q Consensus       129 ~~~---~------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~  190 (497)
                      .++   .            ......+++. +|+++.+ ++..++.....+.+.+|.  .+.||+||||||+.|. .|.++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~  250 (561)
T PRK13748        173 IDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPIP  250 (561)
T ss_pred             cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCCC
Confidence            000   0            0011223444 7888876 677777665566666663  6999999999999987 45555


Q ss_pred             CCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH
Q 010917          191 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  270 (497)
Q Consensus       191 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~  270 (497)
                      |.+...  .+.    ..........+++++|||+|++|+|+|..|.++|.+|+++++. .+++. +++++...+++.|++
T Consensus       251 g~~~~~--~~~----~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~  322 (561)
T PRK13748        251 GLKETP--YWT----STEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFRA  322 (561)
T ss_pred             CCCccc--eEc----cHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHHH
Confidence            532211  221    1122222245789999999999999999999999999999985 45554 799999999999999


Q ss_pred             CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEE
Q 010917          271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF  347 (497)
Q Consensus       271 ~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iy  347 (497)
                      .||++++++.+++++.. ++.+ .+.+.++ ++++|.|++|+|++||+++  +++++++.+ +|+|.||+++||+.||||
T Consensus       323 ~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~Iy  399 (561)
T PRK13748        323 EGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIY  399 (561)
T ss_pred             CCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEE
Confidence            99999999999999754 3332 3455554 6999999999999999986  577888875 577999999999999999


Q ss_pred             EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCC-----
Q 010917          348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-----  421 (497)
Q Consensus       348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-----  421 (497)
                      |+|||+..+.          ....|..+|+.+|.||++... .++...|+  ...++..       +..+|....     
T Consensus       400 A~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~  460 (561)
T PRK13748        400 AAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQ-------VATVGYSEAEAHHD  460 (561)
T ss_pred             EeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCC-------ceeeeCCHHHHHHc
Confidence            9999997653          334588899999999986432 23344554  2222222       344554321     


Q ss_pred             --cE-EE-----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHH
Q 010917          422 --ET-IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE  482 (497)
Q Consensus       422 --~~-~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~  482 (497)
                        .. ..           .+.....+.+++++  +++|+|+++++..+.++... ..+++.+.+++ . ..++.|||++|
T Consensus       461 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e  540 (561)
T PRK13748        461 GIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVE  540 (561)
T ss_pred             CCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHH
Confidence              00 00           01112447777775  58999999877777665544 55678888886 3 33578999999


Q ss_pred             HHHHHHccCCc
Q 010917          483 ALEIARAALPV  493 (497)
Q Consensus       483 ~~~~~~~~~~~  493 (497)
                      +++.|++.+..
T Consensus       541 ~~~~~~~~~~~  551 (561)
T PRK13748        541 GLKLAAQTFNK  551 (561)
T ss_pred             HHHHHHHHhhc
Confidence            99999976543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=1.3e-40  Score=339.46  Aligned_cols=394  Identities=18%  Similarity=0.250  Sum_probs=264.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCC--------CCCC---CCCCCCC-ccccCCC-----CCC----
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKE--------AYAP---YERPALT-KGYLFPL-----DKK----  116 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~--------~~~~---~~~~~l~-~~~l~~~-----~~~----  116 (497)
                      ..+||+||||||+|..||..+++. |.   +|+|||++        ..+.   .++-..+ +.++...     ...    
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~   78 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF   78 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence            458999999999999999999997 76   89999974        1111   0111111 1111000     000    


Q ss_pred             ---------CCCCCCCccccC---CCCCCCCHhHHHH-cCcEEEeCCcEEEEecCCCEEEECC--------CcEEEeccE
Q 010917          117 ---------PARLPGFHTCVG---SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSL  175 (497)
Q Consensus       117 ---------~~~~~~~~~~~~---~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------g~~i~~d~l  175 (497)
                               ..++........   ..+.......+++ .|++++.+. ..  ..+.++|.+.+        .+.+.||+|
T Consensus        79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~--f~~~~~v~V~~~~~~~~~~~~~~~~d~l  155 (486)
T TIGR01423        79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GA--LEDKNVVLVRESADPKSAVKERLQAEHI  155 (486)
T ss_pred             CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EE--EccCCEEEEeeccCCCCCcceEEECCEE
Confidence                     000000000000   0000011122444 389998863 33  33456665531        247999999


Q ss_pred             EeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcch
Q 010917          176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL  252 (497)
Q Consensus       176 vlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~  252 (497)
                      |||||+.|. .|.++|.+  .+   .+..+   +......+++++|||+|++|+|+|..+..+   |.+||++++.++++
T Consensus       156 IIATGs~p~-~p~i~G~~--~~---~~~~~---~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il  226 (486)
T TIGR01423       156 LLATGSWPQ-MLGIPGIE--HC---ISSNE---AFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL  226 (486)
T ss_pred             EEecCCCCC-CCCCCChh--he---echhh---hhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence            999999986 45444421  12   22222   222224579999999999999999877655   99999999999998


Q ss_pred             hhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-
Q 010917          253 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-  329 (497)
Q Consensus       253 ~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-  329 (497)
                      +. +++++.+.+.+.|+++||++++++.+++++..+++. ..+.+.+|+++++|.|++++|++|++++  +++++++.+ 
T Consensus       227 ~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~  304 (486)
T TIGR01423       227 RG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTK  304 (486)
T ss_pred             cc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECC
Confidence            74 899999999999999999999999999998643332 3566778889999999999999999986  467888775 


Q ss_pred             CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCC
Q 010917          330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGS  407 (497)
Q Consensus       330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~  407 (497)
                      +|+|.||+++||+.|||||+|||+..+.          ....|..||+.++.||++....  .+..+|+   ..|..+  
T Consensus       305 ~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~p--  369 (486)
T TIGR01423       305 KGAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIP--  369 (486)
T ss_pred             CCCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCC--
Confidence            5779999999999999999999987542          3445899999999999974332  3445664   334332  


Q ss_pred             CcceeeEEeecCCCc-------EE-E-----------EccC-CCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHh
Q 010917          408 PRKVWWQFFGDNVGE-------TI-E-----------IGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLAR  464 (497)
Q Consensus       408 ~~~~~~~~~g~~~~~-------~~-~-----------~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~  464 (497)
                          .+..+|....+       +. .           .+.. ...+.++.++  +++|+|+++++.++.++... ..+++
T Consensus       370 ----eia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~  445 (486)
T TIGR01423       370 ----PIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLK  445 (486)
T ss_pred             ----ceEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence                13344433210       00 0           0111 1246677664  48999999878777776544 55678


Q ss_pred             CCCCCC-h-hhhcCCCcHHHHHHHHH
Q 010917          465 SQPFVD-K-AKLQQASSVEEALEIAR  488 (497)
Q Consensus       465 ~~~~~~-~-~~~~~~~~~~~~~~~~~  488 (497)
                      .+.+++ . ..++.|||++|++..+.
T Consensus       446 ~~~t~~dl~~~~~~hPt~sE~~~~~~  471 (486)
T TIGR01423       446 LNAKISDFYNTIGVHPTSAEELCSMR  471 (486)
T ss_pred             cCCCHHHHhhcccCCCCcHHHHHhhc
Confidence            888886 3 34589999999999986

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-39  Score=339.27  Aligned_cols=319  Identities=19%  Similarity=0.267  Sum_probs=224.6

Q ss_pred             cEEEeCCcEEEEecCCCEEEE-CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEE
Q 010917          144 IEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  222 (497)
Q Consensus       144 v~~~~~~~v~~i~~~~~~v~~-~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv  222 (497)
                      +++..+. ..-+  +.+++.+ .+++++.||+||||||+.|.. |..++.+.+++++.   .+...+   ...+++++||
T Consensus       249 v~vi~G~-a~f~--~~~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l---~~lpk~VvIV  318 (659)
T PTZ00153        249 VQVIYER-GHIV--DKNTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKL---EGLQNYMGIV  318 (659)
T ss_pred             eEEEEeE-EEEe--cCCeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhh---hhcCCceEEE
Confidence            5666542 2212  3445544 356789999999999999874 44333333345443   333332   2347899999


Q ss_pred             cCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHH-HHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC--
Q 010917          223 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED--  299 (497)
Q Consensus       223 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~--  299 (497)
                      |+|++|+|+|..|.++|.+||++++.+++++. +++++...+.+.+ +++||++++++.|++++..+++....+.+.+  
T Consensus       319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~  397 (659)
T PTZ00153        319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQ  397 (659)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccc
Confidence            99999999999999999999999999999985 8999999988875 6799999999999999865333322343321  


Q ss_pred             -----C--------cEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCC------CCcEEEeccccccCCc
Q 010917          300 -----G--------STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLK  358 (497)
Q Consensus       300 -----g--------~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~------~~~iya~GD~~~~~~~  358 (497)
                           +        +++++|.|++|+|++||++.  ++.+++..++|+|.||+++||+      +|+|||+|||+..+. 
T Consensus       398 ~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~-  476 (659)
T PTZ00153        398 TGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM-  476 (659)
T ss_pred             cccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc-
Confidence                 1        37999999999999999987  4677887777889999999997      699999999986432 


Q ss_pred             cCCcccccccHHHHHHHHHHHHHHHhcCC------------C--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc--
Q 010917          359 MYDRTARVEHVDHARQSAQHCIKALLSAQ------------T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--  422 (497)
Q Consensus       359 ~~g~~~~~~~~~~A~~~g~~~a~~i~~~~------------~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~--  422 (497)
                               ....|..||+.++++|.+..            .  ..|..+|..   .|..+      .+.++|....+  
T Consensus       477 ---------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~---ift~P------eiA~VGlTE~eA~  538 (659)
T PTZ00153        477 ---------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSV---CYTTP------ELAFIGLTEKEAK  538 (659)
T ss_pred             ---------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEE---EECcC------ceEEeeCCHHHHH
Confidence                     44569999999999998642            1  124455541   11111      02233322110  


Q ss_pred             --------------------EEEEcc---------------------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH
Q 010917          423 --------------------TIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL  459 (497)
Q Consensus       423 --------------------~~~~~~---------------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~  459 (497)
                                          ....+.                     ....+.++.++  +++|+|+++++.++.++...
T Consensus       539 ~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~  618 (659)
T PTZ00153        539 ELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHE  618 (659)
T ss_pred             hcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHH
Confidence                                000000                     02346777664  58999999888888776655


Q ss_pred             H-HHHhCCCCCC--hhhhcCCCcHHHHHHHHHccCC
Q 010917          460 P-TLARSQPFVD--KAKLQQASSVEEALEIARAALP  492 (497)
Q Consensus       460 ~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  492 (497)
                      - .+++.+.+++  ...++.|||++|.+..|++++.
T Consensus       619 ~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~  654 (659)
T PTZ00153        619 GVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIA  654 (659)
T ss_pred             HHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHH
Confidence            4 5578888887  3445889999999999998865

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=5.9e-41  Score=356.69  Aligned_cols=345  Identities=21%  Similarity=0.251  Sum_probs=247.4

Q ss_pred             EeecccccccCcccccCCCCcccccC--CCCchhhhccccccc-------c--cc-cCCCCCcEEEEcCchHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA-------Y--SS-FANENREFVIVGGGNAAGYAARTF   79 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~--~~-~~~~~~~VvIIGgG~AGl~aA~~L   79 (497)
                      ..+||||.+||++|+.+|..+|.|..  .+++|..++|+..+.       .  .+ ...+.++|+||||||||++||..|
T Consensus       479 ~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~L  558 (1019)
T PRK09853        479 YQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFL  558 (1019)
T ss_pred             HHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHH
Confidence            46899999999999999999999975  899999998887542       1  11 134578999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC
Q 010917           80 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  159 (497)
Q Consensus        80 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~  159 (497)
                      +++|+   +|+|+|+++.....   +.  +..+....+.+           ......+++.+.|+++++++.+ .++.  
T Consensus       559 ar~G~---~VtV~Ek~~~~GG~---lr--~~IP~~Rlp~e-----------vL~~die~l~~~GVe~~~gt~V-di~l--  616 (1019)
T PRK09853        559 ARAGH---PVTVFEREENAGGV---VK--NIIPQFRIPAE-----------LIQHDIEFVKAHGVKFEFGCSP-DLTV--  616 (1019)
T ss_pred             HHcCC---eEEEEecccccCcc---ee--eecccccccHH-----------HHHHHHHHHHHcCCEEEeCcee-EEEh--
Confidence            99998   89999998653211   00  11111111110           0123346778889999998766 2322  


Q ss_pred             CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecC-HHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC
Q 010917          160 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW  238 (497)
Q Consensus       160 ~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~-~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~  238 (497)
                           ++.....||+||||||+.+...+.++|.+ +++....+ +.+..........+++|+|||||++|+|+|..+.+.
T Consensus       617 -----e~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~Rl  690 (1019)
T PRK09853        617 -----EQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRV  690 (1019)
T ss_pred             -----hhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhc
Confidence                 23334579999999999854434445543 34443211 122212223345689999999999999999998887


Q ss_pred             -C-CcEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE----------------EEEEeCC
Q 010917          239 -K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----------------AAVKLED  299 (497)
Q Consensus       239 -g-~~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v----------------~~v~~~~  299 (497)
                       | .+|+++.+++. .++.     ....+.+.+ +.||+++.+..+.++..  ++++                ..+...+
T Consensus       691 gGakeVTLVyRr~~~~MPA-----~~eEle~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~  762 (1019)
T PRK09853        691 PGVEKVTVVYRRTKQEMPA-----WREEYEEAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGE  762 (1019)
T ss_pred             CCCceEEEEEccCcccccc-----cHHHHHHHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCC
Confidence             4 48999998763 3332     223344433 57999999998988863  2322                1222334


Q ss_pred             CcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917          300 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  378 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  378 (497)
                      ++++++|.||+|+|.+|+.++++..|+..+ +|++.||++++|+.|+|||+|||+..+.          .+..|+.+|+.
T Consensus       763 ~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qGr~  832 (1019)
T PRK09853        763 TVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADARR  832 (1019)
T ss_pred             eEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHHHH
Confidence            468999999999999999999998888765 5789999999999999999999986543          45679999999


Q ss_pred             HHHHHhcCCCCCCCCCCceeeecc
Q 010917          379 CIKALLSAQTHTYDYLPYFYSRVF  402 (497)
Q Consensus       379 ~a~~i~~~~~~~~~~~p~~~~~~~  402 (497)
                      ||.+|++.....+...|++|++.+
T Consensus       833 AA~nI~~~~~~~~~~~~~~~~~~~  856 (1019)
T PRK09853        833 AADAILSREGIRSHQNDKYWNNVE  856 (1019)
T ss_pred             HHHHHhhhcCCCcccccccccccc
Confidence            999999766567778888887654

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.1e-39  Score=334.76  Aligned_cols=399  Identities=18%  Similarity=0.209  Sum_probs=264.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-CccccC--------CCCC---CCCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYLF--------PLDK---KPARLPGF  123 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~l~--------~~~~---~~~~~~~~  123 (497)
                      .++||+||||||||+++|..|++.|.   +|++||+++...-   ++-.. ++.++.        ....   .....+.+
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~   91 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI   91 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence            45899999999999999999999987   8999998743221   00000 010000        0000   00000000


Q ss_pred             c--ccc------CCCCC-CCCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCCCC
Q 010917          124 H--TCV------GSGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG  191 (497)
Q Consensus       124 ~--~~~------~~~~~-~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~g  191 (497)
                      .  ...      -.... ......++.. +++++.+ +..-++.....+.+.+|+  ++.||+||||||+.|. .|.++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~G  169 (479)
T PRK14727         92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIPG  169 (479)
T ss_pred             CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCCC
Confidence            0  000      00000 0112233333 7888875 344455444455556663  6899999999999987 455555


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                      .....+  ...   .+.+ .....+++++|||+|++|+|+|..|.++|.+|+++++. .+++. +++++.+.+++.+++.
T Consensus       170 ~~~~~~--~~~---~~~l-~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~~  241 (479)
T PRK14727        170 LMDTPY--WTS---TEAL-FSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEKE  241 (479)
T ss_pred             cCccce--ecc---hHHh-ccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHhC
Confidence            322111  111   1122 11234689999999999999999999999999999875 56654 7899999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEE
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA  348 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya  348 (497)
                      ||++++++++++++..++ .+ .+.+.++ ++++|.||+|+|+.||+.+  ++.++++.+ +|+|.||+++||+.|+|||
T Consensus       242 GV~i~~~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA  318 (479)
T PRK14727        242 GIEVLNNTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYA  318 (479)
T ss_pred             CCEEEcCcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEE
Confidence            999999999999975433 22 3455555 5999999999999999886  567788765 5779999999999999999


Q ss_pred             eccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-----
Q 010917          349 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-----  422 (497)
Q Consensus       349 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-----  422 (497)
                      +|||+..+.          ....|..+|+.+|.+|++... .++...|+.  ..++..       +..+|....+     
T Consensus       319 ~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g  379 (479)
T PRK14727        319 AGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQ-------VATVGLSEAKAHLSG  379 (479)
T ss_pred             eeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCc-------eeeeeCCHHHHHHcC
Confidence            999997643          334588999999999996432 234445542  222221       4445543221     


Q ss_pred             --E---EE---------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHH
Q 010917          423 --T---IE---------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA  483 (497)
Q Consensus       423 --~---~~---------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~  483 (497)
                        .   ..         .+.....+.+++++  +++|+|+++++..+.++... ..+++.+.+++ . ...+.|||++|+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~  459 (479)
T PRK14727        380 IETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEG  459 (479)
T ss_pred             CceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHH
Confidence              0   00         01112346777764  58999999877777766544 45678888886 3 335889999999


Q ss_pred             HHHHHccCC
Q 010917          484 LEIARAALP  492 (497)
Q Consensus       484 ~~~~~~~~~  492 (497)
                      ++.|++.+.
T Consensus       460 ~~~~~~~~~  468 (479)
T PRK14727        460 LKLCAQTFR  468 (479)
T ss_pred             HHHHHHhhh
Confidence            999997543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=2.6e-40  Score=334.41  Aligned_cols=308  Identities=20%  Similarity=0.273  Sum_probs=235.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      ..+++|||||||+||+.+|..|.+.++   +|||||+++++.|. |.++. +...... ...+           ...+..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~~~-----------~~~~~~   70 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQ-TTTGTLE-FRSI-----------CEPVRP   70 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHH-hcccCCC-hHHh-----------HHHHHH
Confidence            456799999999999999999975444   89999999988774 44332 2221111 1111           112344


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCCEEEE----------CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD  207 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~~v~~----------~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~  207 (497)
                      .+...+++++. .+|+.||++++.+.+          +++.++.||+||||||+.+.. +.+||.. +.++.++++.++.
T Consensus        71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~-~~ipG~~-e~~~~~~~~~~a~  147 (424)
T PTZ00318         71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT-FNIPGVE-ERAFFLKEVNHAR  147 (424)
T ss_pred             HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCC-CCCCCHH-HcCCCCCCHHHHH
Confidence            45667888876 599999999999888          466789999999999999863 5556642 2445667777766


Q ss_pred             HHHHhhc-----------------cCCeEEEEcCCHHHHHHHHHHHh--------------CCCcEEEEecCCcchhhcc
Q 010917          208 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLF  256 (497)
Q Consensus       208 ~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~--------------~g~~Vtlv~~~~~~~~~~~  256 (497)
                      .+.+.+.                 ..++++|||+|++|+|+|..|++              .+.+|+++++.+++++. +
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~  226 (424)
T PTZ00318        148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-F  226 (424)
T ss_pred             HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-C
Confidence            6544321                 12489999999999999999976              36889999999999874 8


Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEe
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV  335 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~v  335 (497)
                      ++.+.+.+++.|+++||+++++++|++++.+      .+.+++|+++++|.+|+++|.+|+ +++++++++.+ +|+|.|
T Consensus       227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~V  299 (424)
T PTZ00318        227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISV  299 (424)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEe
Confidence            9999999999999999999999999999742      467889999999999999999998 68888888765 689999


Q ss_pred             cCCCC-CCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 010917          336 DGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY  398 (497)
Q Consensus       336 d~~~~-t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~  398 (497)
                      |+++| +++|||||+|||+..+....     ...+..|.+||+.+|+||.+.........||.|
T Consensus       300 d~~l~~~~~~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~  358 (424)
T PTZ00318        300 DDHLRVKPIPNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY  358 (424)
T ss_pred             CCCcccCCCCCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence            99999 59999999999998754221     225677999999999999753222113566654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.3e-39  Score=332.95  Aligned_cols=397  Identities=18%  Similarity=0.220  Sum_probs=265.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccC--------------CC----CCCCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF--------------PL----DKKPARL  120 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~l~--------------~~----~~~~~~~  120 (497)
                      +|+||||||||++||..|++.|.   +|+|||++....  ..+ +--++.++.              ..    .....++
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   78 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW   78 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence            89999999999999999999987   899999975321  001 000111100              00    0000000


Q ss_pred             CCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC-cEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          121 PGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       121 ~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                      .......   ...+.......+++.+++++.+ ++..++.....+..+++ .+++||+||||||++|+.+| .++.+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~  156 (458)
T PRK06912         79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKW  156 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCe
Confidence            0000000   0000001122345568998875 55556644445555455 36999999999999987443 33322233


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                      +.+      +.........+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.|++.||+++
T Consensus       157 v~~------~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~  229 (458)
T PRK06912        157 IIN------SKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIF  229 (458)
T ss_pred             EEc------chHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEE
Confidence            322      2223333345789999999999999999999999999999999999875 688999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCCCCcEEEeccc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV  352 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~  352 (497)
                      +++++++++.. +..+ .+.. +|  +++++|.|++|+|.+|+.+.  ++..++..+++++.||+++||+.|||||+|||
T Consensus       230 ~~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~  306 (458)
T PRK06912        230 TGAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDV  306 (458)
T ss_pred             ECCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeec
Confidence            99999999753 2222 2332 34  36999999999999999875  46777777666799999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCC-------cEE
Q 010917          353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI  424 (497)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~  424 (497)
                      +..+.          ....|..+|+.+|.++.+... .++..+|..   .|..+      .+..+|....       ...
T Consensus       307 ~~~~~----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~---v~~~p------~~a~vGlte~~a~~~g~~~~  367 (458)
T PRK06912        307 IGGIQ----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRC---IYTSP------EIASVGLTEKQAREQYGDIR  367 (458)
T ss_pred             CCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeE---EecCc------hhEEeeCCHHHHHHCCCCeE
Confidence            96432          445699999999999986432 234556653   12111      0233343221       000


Q ss_pred             E-------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCC--hhhhcCCCcHHHHHHH
Q 010917          425 E-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD--KAKLQQASSVEEALEI  486 (497)
Q Consensus       425 ~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  486 (497)
                      .             .+. ...+.++.++  +++|+|+++++.++.++.. +..+++.+.+++  ...++.|||++|+++.
T Consensus       368 ~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  446 (458)
T PRK06912        368 IGEFPFTANGKALIIGE-QTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHE  446 (458)
T ss_pred             EEEEecCcchhHhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHH
Confidence            0             111 1346777664  4899999987777776554 445678888886  3446889999999999


Q ss_pred             HHccCCc
Q 010917          487 ARAALPV  493 (497)
Q Consensus       487 ~~~~~~~  493 (497)
                      |++.+..
T Consensus       447 ~~~~~~~  453 (458)
T PRK06912        447 ALLQAVG  453 (458)
T ss_pred             HHHHhhc
Confidence            9876543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=4.9e-39  Score=328.79  Aligned_cols=394  Identities=20%  Similarity=0.244  Sum_probs=262.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC------CCCCCCCCCcc-----ccCC------CCCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY------APYERPALTKG-----YLFP------LDKKPARLPG  122 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~------~~~~~~~l~~~-----~l~~------~~~~~~~~~~  122 (497)
                      ++||+||||||||+.||..+++.|.   +|++||+...      ..+....+..+     .+..      .......+ +
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g   77 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-G   77 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-C
Confidence            4799999999999999999999997   8999997421      01111111100     0000      00000000 0


Q ss_pred             Cccc--cCCCC--------------CCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEEC--CC--cEEEeccEEeccCCC
Q 010917          123 FHTC--VGSGG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCT  182 (497)
Q Consensus       123 ~~~~--~~~~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~g--~~i~~d~lvlAtG~~  182 (497)
                      +...  ...++              .......++..+|+++.+ ...-+++  +++.+.  ++  ..+.||+||||||++
T Consensus        78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~  154 (484)
T TIGR01438        78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDK--HRIKATNKKGKEKIYSAERFLIATGER  154 (484)
T ss_pred             cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCC
Confidence            0000  00000              011223456779999876 4444443  444442  33  369999999999999


Q ss_pred             CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHH
Q 010917          183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  262 (497)
Q Consensus       183 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~  262 (497)
                      |+. |.++|...    ..   .+++.+......+++++|||+|++|+|+|..|+++|.+|+++++ +.+++ .+++++.+
T Consensus       155 p~~-p~ipG~~~----~~---~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~  224 (484)
T TIGR01438       155 PRY-PGIPGAKE----LC---ITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCAN  224 (484)
T ss_pred             CCC-CCCCCccc----ee---ecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHH
Confidence            874 54554311    11   12333333334578999999999999999999999999999987 46665 48999999


Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeccCcCCCcc--hhhcCCccc--CCCEEe
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQV  335 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~--~g~i~v  335 (497)
                      .+++.|+++||++++++.+.+++..+ +. ..+.+.++   +++++|.|++|+|++||+++  +++.+++.+  +|+|.|
T Consensus       225 ~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~V  302 (484)
T TIGR01438       225 KVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPA  302 (484)
T ss_pred             HHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEec
Confidence            99999999999999999999987543 32 23555555   37999999999999999987  567888765  377999


Q ss_pred             cCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceee
Q 010917          336 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWW  413 (497)
Q Consensus       336 d~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~  413 (497)
                      |++++|+.|+|||+|||+.....         ....|..||+.+|+||+++..  ..|..+|+.   .|..+      .+
T Consensus       303 d~~~~Ts~p~IyA~GDv~~~~~~---------l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p------~i  364 (484)
T TIGR01438       303 DEEEQTNVPYIYAVGDILEDKQE---------LTPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPL------EY  364 (484)
T ss_pred             CCCcccCCCCEEEEEEecCCCcc---------chHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCC------ce
Confidence            99999999999999999963211         345699999999999986442  245566653   23221      13


Q ss_pred             EEeecCCCc---------E-EEEccC-------------CCcEEEEEE-E--CCEEEEEEeecCChHHhhHH-HHHHhCC
Q 010917          414 QFFGDNVGE---------T-IEIGNF-------------DPKIATFWI-D--SGKLKGVLVESGSPEEFQLL-PTLARSQ  466 (497)
Q Consensus       414 ~~~g~~~~~---------~-~~~~~~-------------~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~  466 (497)
                      ..+|....+         . +....+             ...+.++.+ +  +++|+|+++++.++.++... ..+++++
T Consensus       365 a~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~  444 (484)
T TIGR01438       365 GACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCG  444 (484)
T ss_pred             eeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            334432210         0 000111             123556654 3  58999999877777775544 5567888


Q ss_pred             CCCC-h-hhhcCCCcHHHHHHHHHcc
Q 010917          467 PFVD-K-AKLQQASSVEEALEIARAA  490 (497)
Q Consensus       467 ~~~~-~-~~~~~~~~~~~~~~~~~~~  490 (497)
                      .+++ . ...+.|||++|++..++..
T Consensus       445 ~t~~dl~~~~~~hPt~sE~~~~~~~~  470 (484)
T TIGR01438       445 LTKKDLDNTIGIHPVCAEVFTTLSVT  470 (484)
T ss_pred             CCHHHHhhhhcCCCChHHHHHHhhhh
Confidence            8886 3 3457899999999999865

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=2.1e-39  Score=332.85  Aligned_cols=400  Identities=21%  Similarity=0.286  Sum_probs=267.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-CccccCCC------------C----CCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYLFPL------------D----KKPARL  120 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~l~~~------------~----~~~~~~  120 (497)
                      +||+||||||||++||..|+++|+   +|+|||++ ...-   ++... ++.++...            .    ....++
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~~-~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   77 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGL---KVALVEKE-YLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW   77 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCC---eEEEEecC-CCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence            799999999999999999999997   89999993 3211   11111 11000000            0    000000


Q ss_pred             CCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC-cEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          121 PGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       121 ~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                      +.....   ............+++.+++++.+ ++..++.....+...++ .++.||+||||||+.|+.+| .+ ...++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~~  154 (461)
T TIGR01350        78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFDG  154 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCCC
Confidence            000000   00000001122345678998886 45555544444444444 47999999999999987533 22 11222


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                      . .+.+..+.   ......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++. +++++...+.+.+++.||+++
T Consensus       155 ~-~~~~~~~~---~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~  229 (461)
T TIGR01350       155 E-VVITSTGA---LNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKIL  229 (461)
T ss_pred             c-eEEcchHH---hccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEEE
Confidence            1 12222222   222345789999999999999999999999999999999998874 789999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCc--chhhcCCccc-CCCEEecCCCCCCCCcEEEecc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  351 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD  351 (497)
                      +++++.+++.. ++.+ .+.+.+|  +++++|.||+|+|.+|+++  +++++++..+ +|++.||++++|+.|+|||+||
T Consensus       230 ~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD  307 (461)
T TIGR01350       230 TNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGD  307 (461)
T ss_pred             eCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeee
Confidence            99999999754 3333 3555666  5799999999999999998  5788888875 4779999999999999999999


Q ss_pred             ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCCC-------c
Q 010917          352 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E  422 (497)
Q Consensus       352 ~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~  422 (497)
                      |+..+.          ....|..+|+.+|.+|.+...  .++...|+.  ..++..       +..+|....       +
T Consensus       308 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g~~  368 (461)
T TIGR01350       308 VIGGPM----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAGYD  368 (461)
T ss_pred             cCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCCCC
Confidence            997432          456799999999999986432  223344542  222211       233333211       0


Q ss_pred             E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC--hhhhcCCCcHHHHHH
Q 010917          423 T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALE  485 (497)
Q Consensus       423 ~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~  485 (497)
                      . ...-           +....+.++.++  +++|+|+++++.++.++... ..+++++.+++  ...+..||+++|+++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~  448 (461)
T TIGR01350       369 VKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIK  448 (461)
T ss_pred             eEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHH
Confidence            0 0000           112346677664  48999999878777766544 55679998886  334688999999999


Q ss_pred             HHHccCCc
Q 010917          486 IARAALPV  493 (497)
Q Consensus       486 ~~~~~~~~  493 (497)
                      .|++++..
T Consensus       449 ~~~~~~~~  456 (461)
T TIGR01350       449 EAALAALG  456 (461)
T ss_pred             HHHHHhcc
Confidence            99887544

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=2.6e-39  Score=329.30  Aligned_cols=317  Identities=24%  Similarity=0.301  Sum_probs=232.8

Q ss_pred             cCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEE
Q 010917          142 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV  221 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV  221 (497)
                      .||+++.+..+..   +.++|.+.+|+++.||+||||||+.|.. |+..+  ..++. +.+..+...+   ...+++++|
T Consensus       105 ~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~-~~~~~~~~~l---~~~~k~vvV  174 (452)
T TIGR03452       105 PNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVR-YHTNEDIMRL---PELPESLVI  174 (452)
T ss_pred             CCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCE-EEcHHHHHhh---hhcCCcEEE
Confidence            6899998754432   5678888888889999999999999864 43222  22332 2333343333   235789999


Q ss_pred             EcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc
Q 010917          222 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS  301 (497)
Q Consensus       222 vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~  301 (497)
                      ||+|++|+|+|..|++.|.+|+++++.+.+++. +++++...+.+.+ +.||+++++++|++++..+ +.+ .+.+.+|+
T Consensus       175 IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~-~~v-~v~~~~g~  250 (452)
T TIGR03452       175 VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDG-DGV-TLTLDDGS  250 (452)
T ss_pred             ECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC-CeE-EEEEcCCC
Confidence            999999999999999999999999999988864 7889888887755 5689999999999998543 333 46677888


Q ss_pred             EEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917          302 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  378 (497)
Q Consensus       302 ~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  378 (497)
                      ++++|.|++++|++||+++  ++++|++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..||+.
T Consensus       251 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~  320 (452)
T TIGR03452       251 TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEARV  320 (452)
T ss_pred             EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHHH
Confidence            9999999999999999987  467788875 5779999999999999999999997542          23458899999


Q ss_pred             HHHHHhcCC---CCCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E-EEEcc-----------CCCcEEEE
Q 010917          379 CIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-IEIGN-----------FDPKIATF  436 (497)
Q Consensus       379 ~a~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~-~~~~~-----------~~~~~~~~  436 (497)
                      +|+||++..   ...+..+|..   .|..+      .+..+|....+       . +..-.           ....+.++
T Consensus       321 ~a~ni~~~~~~~~~~~~~~p~~---i~t~p------~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl  391 (452)
T TIGR03452       321 VKHNLLHPNDLRKMPHDFVPSA---VFTHP------QIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKL  391 (452)
T ss_pred             HHHHhcCCCCcccCCCCCCCeE---EECCC------CeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEE
Confidence            999998643   2344556653   23211      13344443221       0 00000           11346677


Q ss_pred             EEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-hhh--hcCCCcHHHHHHHHHccC
Q 010917          437 WID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEEALEIARAAL  491 (497)
Q Consensus       437 ~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~  491 (497)
                      .++  +++|+|+++++.++.++... ..+++.+.+++ ...  .+.|||++|+++.|++++
T Consensus       392 v~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~  452 (452)
T TIGR03452       392 IADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL  452 (452)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence            664  58999999878777766555 45678998886 443  468999999999998864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=7.8e-41  Score=339.86  Aligned_cols=331  Identities=20%  Similarity=0.209  Sum_probs=243.1

Q ss_pred             EeecccccccCccccc--CCCCccccc------CCCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHH
Q 010917           12 SVSNSLSFKHGLSLWC--PQSPSLHRI------RHSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGY   74 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~   74 (497)
                      ..+||||.++|++|+.  +|..+|.+.      ..++++..++|+..+.         ..+.....++|+||||||||++
T Consensus        68 ~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~  147 (449)
T TIGR01316        68 KTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLA  147 (449)
T ss_pred             HHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHH
Confidence            4689999999999998  899999864      2789999988876532         1123345789999999999999


Q ss_pred             HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEE
Q 010917           75 AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTS  154 (497)
Q Consensus        75 aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~  154 (497)
                      ||..|++.|+   +|+|+|+++.....   +.  +-.+....+..+           .....+++.+.|+++++++.+  
T Consensus       148 aA~~l~~~G~---~V~vie~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~~~~l~~~gv~~~~~~~v--  206 (449)
T TIGR01316       148 CASELAKAGH---SVTVFEALHKPGGV---VT--YGIPEFRLPKEI-----------VVTEIKTLKKLGVTFRMNFLV--  206 (449)
T ss_pred             HHHHHHHCCC---cEEEEecCCCCCcE---ee--ecCCCccCCHHH-----------HHHHHHHHHhCCcEEEeCCcc--
Confidence            9999999998   89999997643210   00  000100011000           122345677889999998644  


Q ss_pred             EecCCCEEEECCCcEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecCHHHHHHHHH---------hhccCCeEEEEcC
Q 010917          155 IDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGG  224 (497)
Q Consensus       155 i~~~~~~v~~~~g~~i~~d~lvlAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvVvG~  224 (497)
                          .+.+++++.. ..||+||||||+ .|+ .+.++|.+.++++...++.+...+..         ....+++|+|||+
T Consensus       207 ----~~~v~~~~~~-~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGg  280 (449)
T TIGR01316       207 ----GKTATLEELF-SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGG  280 (449)
T ss_pred             ----CCcCCHHHHH-hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECC
Confidence                2334444332 479999999998 565 45677877888877655444332221         1235789999999


Q ss_pred             CHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC------
Q 010917          225 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------  298 (497)
Q Consensus       225 G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~------  298 (497)
                      |++|+|+|..+.++|.+||++++.+....   +  ......+.+++.||++++++.++++..++++++..+.+.      
T Consensus       281 G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~--~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  355 (449)
T TIGR01316       281 GNTAVDSARTALRLGAEVHCLYRRTREDM---T--ARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQE  355 (449)
T ss_pred             CHHHHHHHHHHHHcCCEEEEEeecCcccC---C--CCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecC
Confidence            99999999999999999999998764211   1  112233567899999999999999976555666655543      


Q ss_pred             ---CC-----------cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcc
Q 010917          299 ---DG-----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       299 ---~g-----------~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                         +|           +++++|.||+|+|+.|+..+++.+++..+ +|+|.||++++|+.|+|||+|||+..+.      
T Consensus       356 ~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~------  429 (449)
T TIGR01316       356 QIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA------  429 (449)
T ss_pred             cCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH------
Confidence               22           36999999999999999988888888765 5789999999999999999999986432      


Q ss_pred             cccccHHHHHHHHHHHHHHHh
Q 010917          364 ARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~  384 (497)
                          .+..|+.+|+.||.+|.
T Consensus       430 ----~v~~Ai~~G~~AA~~I~  446 (449)
T TIGR01316       430 ----TVIRAMGQGKRAAKSIN  446 (449)
T ss_pred             ----HHHHHHHHHHHHHHHHH
Confidence                55679999999999985

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=1.2e-38  Score=323.87  Aligned_cols=371  Identities=21%  Similarity=0.313  Sum_probs=274.4

Q ss_pred             HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCC-HhHHHHcCcEEEeCCcE
Q 010917           74 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PEWYKEKGIEMIYQDPV  152 (497)
Q Consensus        74 ~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v  152 (497)
                      +||.+|++.+. +.+|||||+++.+.|....++. +..........+           ..+. ..++.+.|++++++++|
T Consensus         1 saA~~l~~~~~-~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V   67 (427)
T TIGR03385         1 SAASRVRRLDK-ESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEV   67 (427)
T ss_pred             CHHHHHHhhCC-CCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEE
Confidence            47899998763 6789999999987665433332 111111101110           1222 34558889999888999


Q ss_pred             EEEecCCCEEEECC---CcEEE--eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh--ccCCeEEEEcCC
Q 010917          153 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG  225 (497)
Q Consensus       153 ~~i~~~~~~v~~~~---g~~i~--~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvG~G  225 (497)
                      +.++++.+++.+.+   ++.+.  ||+||||||+.|.. |.++|.+.++++..+++.++..+.+.+  ..+++|+|||+|
T Consensus        68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~-~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG  146 (427)
T TIGR03385        68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG  146 (427)
T ss_pred             EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence            99999888887753   34677  99999999999874 556776667788888888887776665  457899999999


Q ss_pred             HHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEc
Q 010917          226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  305 (497)
Q Consensus       226 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~  305 (497)
                      ++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+++++.  ++.+  +.+.+|+++++
T Consensus       147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~  222 (427)
T TIGR03385       147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA  222 (427)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence            9999999999999999999999988754457888999999999999999999999999974  3333  45678889999


Q ss_pred             CEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          306 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       306 D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      |.+|+|+|.+|+.++++++++..+ +|+|.||++++|+.|+|||+|||+..+....+.......+..|.+||+.+|+||.
T Consensus       223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence            999999999999999999998875 5789999999999999999999998766544443334477789999999999998


Q ss_pred             cCCCCCCCCC-CceeeeccccCCCCcceeeEEeecCCCc---------EEEEc---------cCCCcEEEEEEE--CCEE
Q 010917          385 SAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG---------NFDPKIATFWID--SGKL  443 (497)
Q Consensus       385 ~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~~~---------~~~~~~~~~~~~--~~~~  443 (497)
                      +. ...|... +..++..++..       +..+|....+         .....         +....+.++.++  +++|
T Consensus       303 g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~i  374 (427)
T TIGR03385       303 GN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRI  374 (427)
T ss_pred             CC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeE
Confidence            64 3445432 23334444432       5566654321         11110         001236677764  4999


Q ss_pred             EEEEeecCC-hHHhh-HHHHHHhCCCCCC
Q 010917          444 KGVLVESGS-PEEFQ-LLPTLARSQPFVD  470 (497)
Q Consensus       444 ~g~~~~~~~-~~~~~-~~~~~~~~~~~~~  470 (497)
                      +|+++++.+ +.++. .+..+++++.+++
T Consensus       375 lG~~~~g~~~a~e~i~~~~~ai~~~~t~~  403 (427)
T TIGR03385       375 LGAQAVGKEGADKRIDVLAAAIMAGLTVK  403 (427)
T ss_pred             EEEEEEccccHHHHHHHHHHHHHCCCCHH
Confidence            999987766 66654 4455678887776

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.2e-40  Score=336.96  Aligned_cols=334  Identities=20%  Similarity=0.205  Sum_probs=242.3

Q ss_pred             EeecccccccCccccc--CCCCcccccC--CCCchhhhccccccc--------ccccCCCCCcEEEEcCchHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVA--------YSSFANENREFVIVGGGNAAGYAARTF   79 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~~~VvIIGgG~AGl~aA~~L   79 (497)
                      ..+||||.+||++|++  +|..+|.|..  .+++|..++|+..+.        ..+...+.++|+|||||||||+||..|
T Consensus        80 ~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l  159 (464)
T PRK12831         80 AKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDL  159 (464)
T ss_pred             HHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHH
Confidence            4579999999999997  8999999965  789999998887642        122345678999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC
Q 010917           80 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  159 (497)
Q Consensus        80 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~  159 (497)
                      +++|+   +|+|+|+++...-.   +.  +-.+.    .+++.      ........+++++.|+++++++.+.      
T Consensus       160 ~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~~l~~------~~~~~~~~~~~~~~gv~i~~~~~v~------  215 (464)
T PRK12831        160 AKMGY---DVTIFEALHEPGGV---LV--YGIPE----FRLPK------ETVVKKEIENIKKLGVKIETNVVVG------  215 (464)
T ss_pred             HhCCC---eEEEEecCCCCCCe---ee--ecCCC----ccCCc------cHHHHHHHHHHHHcCCEEEcCCEEC------
Confidence            99998   89999987643100   00  00010    01110      0011233467788999999987542      


Q ss_pred             CEEEECCC-cEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecCHHHHHHHHH--------hhccCCeEEEEcCCHHHH
Q 010917          160 QTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIGM  229 (497)
Q Consensus       160 ~~v~~~~g-~~i~~d~lvlAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g~  229 (497)
                      +.+.+++. +.+.||+||||||+ .|+. +.++|.+.+++++..++.....+..        ....+++|+|||+|++|+
T Consensus       216 ~~v~~~~~~~~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~  294 (464)
T PRK12831        216 KTVTIDELLEEEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAM  294 (464)
T ss_pred             CcCCHHHHHhccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHH
Confidence            22333332 23579999999998 5664 5568888888887665544332211        124679999999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------
Q 010917          230 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------  298 (497)
Q Consensus       230 e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----------  298 (497)
                      |+|..+.++|.+|+++++.+...   ++... ..+ +.+++.||++++++.+.++..++++++..+.+.           
T Consensus       295 d~A~~l~r~Ga~Vtlv~r~~~~~---m~a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~G  369 (464)
T PRK12831        295 DAARTALRLGAEVHIVYRRSEEE---LPARV-EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASG  369 (464)
T ss_pred             HHHHHHHHcCCEEEEEeecCccc---CCCCH-HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCC
Confidence            99999999999999999865311   11111 122 345788999999999999976556666555442           


Q ss_pred             -------CC--cEEEcCEEEEeccCcCCCcchhh-cCCccc-CCCEEecCC-CCCCCCcEEEeccccccCCccCCccccc
Q 010917          299 -------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARV  366 (497)
Q Consensus       299 -------~g--~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~g~~~~~  366 (497)
                             +|  .++++|.||+|+|+.|+..++.+ .++..+ +|++.||++ ++|+.|+|||+|||+..+.         
T Consensus       370 r~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~---------  440 (464)
T PRK12831        370 RRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA---------  440 (464)
T ss_pred             CccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch---------
Confidence                   22  26999999999999999888776 677764 578999997 9999999999999987432         


Q ss_pred             ccHHHHHHHHHHHHHHHhc
Q 010917          367 EHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       367 ~~~~~A~~~g~~~a~~i~~  385 (497)
                       .+..|+.+|+.||.+|..
T Consensus       441 -~v~~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        441 -TVILAMGAGKKAAKAIDE  458 (464)
T ss_pred             -HHHHHHHHHHHHHHHHHH
Confidence             455688999999988853

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2.1e-39  Score=332.59  Aligned_cols=398  Identities=21%  Similarity=0.275  Sum_probs=263.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCCccccC--------------C--CCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLF--------------P--LDKKPAR  119 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~---~~~~~l~~~~l~--------------~--~~~~~~~  119 (497)
                      .++||+||||||||++||..|++.|.   +|+|||++....   +..+--++.++.              +  ......+
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~   78 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID   78 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence            35899999999999999999999987   899999943211   000000110000              0  0000000


Q ss_pred             CCCCccccC---CCCCCCC-HhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC--
Q 010917          120 LPGFHTCVG---SGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY--  193 (497)
Q Consensus       120 ~~~~~~~~~---~~~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~--  193 (497)
                      +........   ..+.... ...++..+++++.+ ++..++  .+.+.+ +++++.||+||||||+.   .|.++|..  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~~~  151 (460)
T PRK06292         79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR---VPPIPGVWLI  151 (460)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCccc
Confidence            000000000   0000011 12234457777764 344343  345555 66789999999999998   23334431  


Q ss_pred             -CCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCC
Q 010917          194 -LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  272 (497)
Q Consensus       194 -~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~G  272 (497)
                       ...+.+      .+........+++++|||+|++|+|+|..|.++|.+|+++++.+.+++. +++++...+++.++++ 
T Consensus       152 ~~~~~~~------~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~-  223 (460)
T PRK06292        152 LGDRLLT------SDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE-  223 (460)
T ss_pred             CCCcEEC------chHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc-
Confidence             122222      2222222345799999999999999999999999999999999998874 7899999999999999 


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEE
Q 010917          273 VKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF  347 (497)
Q Consensus       273 V~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iy  347 (497)
                      |++++++++++++..++..+ .+++.++  +++++|.|++++|.+|++++  ++.++++.+ +|++.||+++||+.|+||
T Consensus       224 I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~Iy  302 (460)
T PRK06292        224 FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIY  302 (460)
T ss_pred             cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEE
Confidence            99999999999985432122 2323333  57999999999999999985  677888765 577999999999999999


Q ss_pred             EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc---
Q 010917          348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---  422 (497)
Q Consensus       348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---  422 (497)
                      |+|||+..+.          ....|..||+.+|.||++...  ..+..+|+.   .|..+      .+..+|....+   
T Consensus       303 A~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~---~~~~~------~~a~vG~te~~a~~  363 (460)
T PRK06292        303 AAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPSV---VFTDP------QIASVGLTEEELKA  363 (460)
T ss_pred             EEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCeE---EECCC------ccEEeECCHHHHHh
Confidence            9999997532          345699999999999986322  234455642   23211      13445543221   


Q ss_pred             ----E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCC--hhhhcCCCcHH
Q 010917          423 ----T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVE  481 (497)
Q Consensus       423 ----~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~  481 (497)
                          . ...-.           ....+.++.++  +++|+|+++++.++.++. .+..+++++.+++  ....+.|||+.
T Consensus       364 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  443 (460)
T PRK06292        364 AGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLS  443 (460)
T ss_pred             cCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence                0 00000           12346677664  489999998777777655 4456679998887  34457899999


Q ss_pred             HHHHHHHccCCcc
Q 010917          482 EALEIARAALPVE  494 (497)
Q Consensus       482 ~~~~~~~~~~~~~  494 (497)
                      |++..+++.+..+
T Consensus       444 e~~~~~~~~~~~~  456 (460)
T PRK06292        444 EGLRTALRDLFSK  456 (460)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999998876543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=6.7e-39  Score=328.91  Aligned_cols=401  Identities=18%  Similarity=0.263  Sum_probs=267.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCC---CCCCCC-ccccC-----C-------C-CC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPY---ERPALT-KGYLF-----P-------L-DK  115 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~------~~~~~---~~~~l~-~~~l~-----~-------~-~~  115 (497)
                      ..+||+||||||||++||.++++.|.   +|+|||+.      ....-   .+...+ +.++.     .       . ..
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~   79 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI   79 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence            35899999999999999999999987   89999981      11100   000000 10000     0       0 00


Q ss_pred             C----CCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEec--CCCEEEEC--CCcEEEeccEEeccCCCCC
Q 010917          116 K----PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       116 ~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~g~~i~~d~lvlAtG~~~~  184 (497)
                      .    ..+++......   -..........++..+++++.+ ++..++.  +.++|.+.  ++++++||+||||||+.|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~  158 (475)
T PRK06327         80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR  158 (475)
T ss_pred             cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence            0    00000000000   0000001123345568998875 5555553  24566664  3457999999999999986


Q ss_pred             cCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHH
Q 010917          185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  264 (497)
Q Consensus       185 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~  264 (497)
                      .+|.++   ..+...+    +++........+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+
T Consensus       159 ~~p~~~---~~~~~~~----~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~  230 (475)
T PRK06327        159 HLPGVP---FDNKIIL----DNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEA  230 (475)
T ss_pred             CCCCCC---CCCceEE----CcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHH
Confidence            444322   2222122    12223332345799999999999999999999999999999999988875 789999999


Q ss_pred             HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecC
Q 010917          265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDG  337 (497)
Q Consensus       265 ~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~  337 (497)
                      .+.++++||+++++++|++++..++ .+ .+.+.+  |  +++++|.|++++|++|++++  ++.+++..+ +|++.||+
T Consensus       231 ~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~  308 (475)
T PRK06327        231 AKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDD  308 (475)
T ss_pred             HHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECC
Confidence            9999999999999999999986433 33 344433  3  47999999999999999884  567788765 57799999


Q ss_pred             CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEe
Q 010917          338 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFF  416 (497)
Q Consensus       338 ~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~  416 (497)
                      +++|+.|+|||+|||+..+.          ....|..||+.+|.+|++... ..|..+|+..   |..+      .+..+
T Consensus       309 ~~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~---~~~p------e~a~v  369 (475)
T PRK06327        309 HCRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI---YTSP------EIAWV  369 (475)
T ss_pred             CCccCCCCEEEEEeccCCcc----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---eCCc------ceEEE
Confidence            99999999999999997432          445699999999999986432 2455566532   2211      13344


Q ss_pred             ecCCCc-------E-EE------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-
Q 010917          417 GDNVGE-------T-IE------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-  471 (497)
Q Consensus       417 g~~~~~-------~-~~------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-  471 (497)
                      |....+       + ..            .+. ...+.++.++  +++|+|+++++.++.++... ..+++++.+++ . 
T Consensus       370 Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~  448 (475)
T PRK06327        370 GKTEQQLKAEGVEYKAGKFPFMANGRALAMGE-PDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA  448 (475)
T ss_pred             eCCHHHHHHcCCCEEEEEEcccccchhhhcCC-CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence            443211       0 00            011 1346777664  58999999888877776644 55679998886 3 


Q ss_pred             hhhcCCCcHHHHHHHHHccCCc
Q 010917          472 AKLQQASSVEEALEIARAALPV  493 (497)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~  493 (497)
                      ..++.|||++|.++.|++.+..
T Consensus       449 ~~~~~hPt~~e~~~~~~~~~~~  470 (475)
T PRK06327        449 RICHAHPTLSEVWHEAALAVDK  470 (475)
T ss_pred             cCCcCCCChHHHHHHHHHHhcc
Confidence            3357899999999999876543

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=7.4e-39  Score=329.07  Aligned_cols=393  Identities=18%  Similarity=0.205  Sum_probs=255.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC----CC--CCCCCCC------Ccccc---------------CC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----YA--PYERPAL------TKGYL---------------FP  112 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~----~~--~~~~~~l------~~~~l---------------~~  112 (497)
                      ++||+||||||||++||..|+++|.   +|+|||+..    ..  .+....+      ++-++               ++
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g   81 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG   81 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence            5899999999999999999999998   899999632    10  0000000      00000               00


Q ss_pred             CC-CCCCCCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC---CcEEEeccEEeccCCCCCc
Q 010917          113 LD-KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       113 ~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---g~~i~~d~lvlAtG~~~~~  185 (497)
                      .. ....++..+.....   ..+.......++..+|+++.+ ++..  .+.++|.+.+   +..++||+||||||+.|..
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~  158 (499)
T PTZ00052         82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPSI  158 (499)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence            00 00000000000000   000000111123356777664 3332  2345665532   3479999999999999874


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917          186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  265 (497)
Q Consensus       186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~  265 (497)
                      ++.++|...    ...   +++.+......+++++|||+|++|+|+|..|+++|.+||++++. .+++ .+++++.+.++
T Consensus       159 p~~i~G~~~----~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~  229 (499)
T PTZ00052        159 PEDVPGAKE----YSI---TSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVV  229 (499)
T ss_pred             CCCCCCccc----eee---cHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHH
Confidence            333454321    111   23333333345789999999999999999999999999999874 5664 48999999999


Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch--hhcCCccc-CCCEEecCCCCCC
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTR  342 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~  342 (497)
                      +.|++.||++++++.+.+++..+ +. ..+.+.+|+++++|.|++++|++||++++  ++++++.+ +|++.+++. +|+
T Consensus       230 ~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts  306 (499)
T PTZ00052        230 EYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTN  306 (499)
T ss_pred             HHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCC
Confidence            99999999999999999987543 32 34677788899999999999999999875  67888775 466677766 999


Q ss_pred             CCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCC
Q 010917          343 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV  420 (497)
Q Consensus       343 ~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~  420 (497)
                      .|+|||+|||+....         ..+..|..||+.+|.||++...  ..+..+|+.   .|..+-      +..+|...
T Consensus       307 ~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~---ift~p~------ia~vGlte  368 (499)
T PTZ00052        307 IPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTT---IFTPIE------YGACGYSS  368 (499)
T ss_pred             CCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeE---EecCCc------ceeecCCH
Confidence            999999999996321         1556799999999999997432  234555653   232210      22333211


Q ss_pred             Cc---------E-EEE-----------------cc---------CCCcEEEEEEE---CCEEEEEEeecCChHHhhHHH-
Q 010917          421 GE---------T-IEI-----------------GN---------FDPKIATFWID---SGKLKGVLVESGSPEEFQLLP-  460 (497)
Q Consensus       421 ~~---------~-~~~-----------------~~---------~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~-  460 (497)
                      .+         . +..                 +.         ....|.++.++   +++|+|+++++.++.++...- 
T Consensus       369 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~  448 (499)
T PTZ00052        369 EAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFS  448 (499)
T ss_pred             HHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHH
Confidence            10         0 000                 00         02346667553   499999999888888876554 


Q ss_pred             HHHhCCCCCC-h-hhhcCCCcHHHHHHHHH
Q 010917          461 TLARSQPFVD-K-AKLQQASSVEEALEIAR  488 (497)
Q Consensus       461 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  488 (497)
                      .+++++.+++ . ..++.|||++|++..+.
T Consensus       449 ~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~  478 (499)
T PTZ00052        449 LALKLGAKKSDFDSMIGIHPTDAEVFMNLS  478 (499)
T ss_pred             HHHHCCCCHHHHhcccccCCCCchhhEEEE
Confidence            5578888876 3 34578999999986654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=2.8e-38  Score=342.24  Aligned_cols=330  Identities=19%  Similarity=0.202  Sum_probs=239.8

Q ss_pred             EeecccccccCccccc--CCCCcccccCCCCchhhhccccccc-----------c----cc-cCCCCCcEEEEcCchHHH
Q 010917           12 SVSNSLSFKHGLSLWC--PQSPSLHRIRHSSAKNFQRRGFVVA-----------Y----SS-FANENREFVIVGGGNAAG   73 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~-~~~~~~~VvIIGgG~AGl   73 (497)
                      ..+||||.+||++|+.  +|..+|.+...+++|..++|+..+.           .    .+ .....++|+|||||||||
T Consensus       240 ~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGL  319 (944)
T PRK12779        240 ESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGL  319 (944)
T ss_pred             HHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHH
Confidence            4689999999999998  6999999988899999988776543           0    11 134579999999999999


Q ss_pred             HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcccc---CCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCC
Q 010917           74 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL---FPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQD  150 (497)
Q Consensus        74 ~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  150 (497)
                      +||..|+++||   +|||+|+.+...        |++   .+....+.++           ..+..+.+++.|+++++++
T Consensus       320 saA~~Lar~G~---~VtVfE~~~~~G--------G~l~yGIP~~rlp~~v-----------i~~~i~~l~~~Gv~f~~n~  377 (944)
T PRK12779        320 INAYLLAVEGF---PVTVFEAFHDLG--------GVLRYGIPEFRLPNQL-----------IDDVVEKIKLLGGRFVKNF  377 (944)
T ss_pred             HHHHHHHHCCC---eEEEEeeCCCCC--------ceEEccCCCCcChHHH-----------HHHHHHHHHhhcCeEEEeE
Confidence            99999999999   899999986432        111   1111111111           1234456778899999875


Q ss_pred             cEEEEecCCCEEEECCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHHh----------hccCCeE
Q 010917          151 PVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKV  219 (497)
Q Consensus       151 ~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~----------~~~~~~v  219 (497)
                      .+      .+.+++++.....||+|+||||+. |+ .+.+||.+.+||++..++.+.......          ...+++|
T Consensus       378 ~v------G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~V  450 (944)
T PRK12779        378 VV------GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEV  450 (944)
T ss_pred             Ee------ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEE
Confidence            44      345666665556899999999995 55 456788888999887665544332211          1257999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC-CCcEEEEEe-
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL-  297 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~~~v~~v~~-  297 (497)
                      +|||||.+|+|+|..+.++|.+|+++.+++.-   .++ .....+.. ..+.||+++++..++++..++ ++.+..+.+ 
T Consensus       451 vVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~---~mp-a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~  525 (944)
T PRK12779        451 FVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS---EMP-ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLD  525 (944)
T ss_pred             EEECCCHHHHHHHHHHHHcCCEEEEEEecCcc---ccc-ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEE
Confidence            99999999999999999999999999987531   111 22223333 357799999999999997542 234544332 


Q ss_pred             --------C--------CC--cEEEcCEEEEeccCcCCCcchh-hcCCccc-CCCEEecC-CCCCCCCcEEEeccccccC
Q 010917          298 --------E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFP  356 (497)
Q Consensus       298 --------~--------~g--~~i~~D~vv~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~iya~GD~~~~~  356 (497)
                              .        +|  .+++||.||+|+|+.|+..+.. ..+++.+ +|.|.||+ +++|+.|+|||+|||+..+
T Consensus       526 ~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~  605 (944)
T PRK12779        526 VNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG  605 (944)
T ss_pred             EEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh
Confidence                    1        22  3699999999999999965432 3466654 57799997 5899999999999999754


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          357 LKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       357 ~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      .          .+..|+.+|+.||.+|..
T Consensus       606 ~----------~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        606 S----------TAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             H----------HHHHHHHHHHHHHHHHHH
Confidence            2          445688999999999864

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-38  Score=295.17  Aligned_cols=405  Identities=23%  Similarity=0.359  Sum_probs=313.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCC---
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT---  135 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---  135 (497)
                      ...-.+|||||.+..+++...+.+.. ...+.+|+.++..||.||+|++.+++........-..|..|.|+....++   
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~da-~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd  255 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSNDA-TAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD  255 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCCC-CceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence            34568999999999998888887765 77899999999999999999998876655444433445555554332211   


Q ss_pred             -----HhHH---HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCC---CCCcEEEecCHH
Q 010917          136 -----PEWY---KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVA  204 (497)
Q Consensus       136 -----~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~---~~~gv~~~~~~~  204 (497)
                           .+.+   ..-||-+..+..|..+|.+.+.|++.||.+|.||.++||||.+|..++.+...   -...+.+++...
T Consensus       256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~  335 (659)
T KOG1346|consen  256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA  335 (659)
T ss_pred             cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence                 1122   22379999999999999999999999999999999999999999876644221   134577888888


Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  280 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~----~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~  280 (497)
                      |.+++...+...++|.|||+|++|.|+|..|.+    .|.+|+-+......+...+++.++++-.+.+++.||.++.+..
T Consensus       336 DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~  415 (659)
T KOG1346|consen  336 DFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAK  415 (659)
T ss_pred             HHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchh
Confidence            998888877777999999999999999999975    4678888888877888888889999999999999999999999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc--CCCEEecCCCCCCCCcEEEeccccccCCc
Q 010917          281 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLK  358 (497)
Q Consensus       281 v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~iya~GD~~~~~~~  358 (497)
                      |.++.... +. ..+.++||.++..|+||+|+|-.||.++++..|++.+  -||+.||..++.. .|||++||++.+.+.
T Consensus       416 v~sv~~~~-~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~  492 (659)
T KOG1346|consen  416 VESVRKCC-KN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDG  492 (659)
T ss_pred             hhhhhhhc-cc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhcc
Confidence            99887543 23 3578999999999999999999999999999999876  4889999999864 799999999999998


Q ss_pred             cCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccccCCCCc----ceeeEEee---cCC-----CcE---
Q 010917          359 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFG---DNV-----GET---  423 (497)
Q Consensus       359 ~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~g---~~~-----~~~---  423 (497)
                      ..|+. +++||.+|...|+.|..||.+ ...+|.....||++.-..-|...    ...+..+|   .+.     ++.   
T Consensus       493 ~LGrR-RVehhdhavvSGRLAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~  570 (659)
T KOG1346|consen  493 VLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSES  570 (659)
T ss_pred             cccce-eccccccceeeceeccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhhc
Confidence            87764 588999999999999999985 56788888899997432211100    00000111   000     000   


Q ss_pred             ------------------------------EEEccCCCcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhCCCCCC
Q 010917          424 ------------------------------IEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD  470 (497)
Q Consensus       424 ------------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  470 (497)
                                                    -..++-.+|-+.||++|++|||+++ .|--..+...++.|..+...|
T Consensus       571 sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~d  646 (659)
T KOG1346|consen  571 SDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYD  646 (659)
T ss_pred             cCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchh
Confidence                                          0011112466899999999999997 565567888889988777665

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=2e-37  Score=308.78  Aligned_cols=293  Identities=23%  Similarity=0.336  Sum_probs=227.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  141 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (497)
                      +|||||||+||+.+|.+|+++..++.+|+|||++++++|.. .++ .++... ....++           .....+++++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~-~~~~g~-~~~~~~-----------~~~~~~~~~~   66 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLP-GMIAGH-YSLDEI-----------RIDLRRLARQ   66 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhh-HHHhee-CCHHHh-----------cccHHHHHHh
Confidence            58999999999999999976533366999999999887763 222 122111 111111           1334567778


Q ss_pred             cCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----HHHhh---c
Q 010917          142 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E  214 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~~---~  214 (497)
                      .+++++.+ +|+.+|+++++|.+++|+++.||+||||||+.+. .|.++|. .++++.++++.++..    +.+..   .
T Consensus        67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (364)
T TIGR03169        67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEGA-ADLAVPVKPIENFLARWEALLESADAPP  143 (364)
T ss_pred             cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence            89999885 8999999999999999988999999999999987 4556663 455666666666554    33322   2


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHh----CC--CcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVG----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~----~g--~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                      .+++++|+|+|++|+|+|..|.+    .|  .+|+++ ..+.+++. +++.+...+.+.++++||++++++++++++.+ 
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-  220 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-  220 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-
Confidence            45799999999999999999975    34  489999 56666654 78889999999999999999999999998632 


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCC-CCCcEEEeccccccCCccCCccccc
Q 010917          289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARV  366 (497)
Q Consensus       289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t-~~~~iya~GD~~~~~~~~~g~~~~~  366 (497)
                           .+.+.+|+++++|.+|+|+|.+|+ .++...++..+ +|++.||+++|| +.|||||+|||+..+..+.     .
T Consensus       221 -----~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~  289 (364)
T TIGR03169       221 -----ALILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----P  289 (364)
T ss_pred             -----eEEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----C
Confidence                 467788999999999999999998 46667777764 588999999998 9999999999998654322     1


Q ss_pred             ccHHHHHHHHHHHHHHHhc
Q 010917          367 EHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       367 ~~~~~A~~~g~~~a~~i~~  385 (497)
                      .....|..||+.+|+||..
T Consensus       290 ~~~~~A~~~g~~~a~ni~~  308 (364)
T TIGR03169       290 KAGVYAVRQAPILAANLRA  308 (364)
T ss_pred             CchHHHHHhHHHHHHHHHH
Confidence            2445689999999999964

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.2e-37  Score=287.57  Aligned_cols=403  Identities=21%  Similarity=0.353  Sum_probs=279.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCCC------------------CCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPL------------------DKK  116 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~l~~~------------------~~~  116 (497)
                      ..+||+|||+||+|..||...++.|+   +-+.||++..+.-.   . +--++.+|...                  +..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~  114 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV  114 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence            57999999999999999999999998   78899997643211   0 00011111100                  001


Q ss_pred             CCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCCCC
Q 010917          117 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG  191 (497)
Q Consensus       117 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g  191 (497)
                      ..+++.+....   -+.+..-....+++++|++..+ .-.-+++..-++.-.+|  ..+.++.+|+||||.-.++|   |
T Consensus       115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P---G  190 (506)
T KOG1335|consen  115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP---G  190 (506)
T ss_pred             ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC---C
Confidence            11111100000   0000111233456678888775 33345555445555555  36899999999999643233   4


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                      ..+++-...    .++..+....-+++++|+|+|.+|+|++....++|.+||+++..+.+.+. +|.++++.+++.|+++
T Consensus       191 I~IDekkIV----SStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQ  265 (506)
T KOG1335|consen  191 ITIDEKKIV----SSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQ  265 (506)
T ss_pred             eEecCceEE----ecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhc
Confidence            333321111    23333333456899999999999999999999999999999999999986 9999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCC
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM  343 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~  343 (497)
                      |++|+++++|...+.+++|.+ .+.+.+   +  ++++||.+++++|++|-++-  +++.|+..| .+++.||..++|.+
T Consensus       266 gikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~v  344 (506)
T KOG1335|consen  266 GIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKV  344 (506)
T ss_pred             CceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccC
Confidence            999999999999998888754 344432   2  57999999999999998764  577787765 67899999999999


Q ss_pred             CcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-CCCCCCCCceeeeccccCCCCcceeeEEeecCCCc
Q 010917          344 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE  422 (497)
Q Consensus       344 ~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~  422 (497)
                      |+||++||+...|.          ...-|..+|..+.+.|.++. ...|.-+|.   ..|.++-      +.++|..+.+
T Consensus       345 P~i~~IGDv~~gpM----------LAhkAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEeq  405 (506)
T KOG1335|consen  345 PHIYAIGDVTLGPM----------LAHKAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQ  405 (506)
T ss_pred             CceEEecccCCcch----------hhhhhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchhh
Confidence            99999999998765          33348889999999988754 346666773   4455442      4445554432


Q ss_pred             E------EEEccC-------------CCcEEEEEEE--CCEEEEEEeecCChHHhhHHHHH-HhCCCCCC-hhhh-cCCC
Q 010917          423 T------IEIGNF-------------DPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-KAKL-QQAS  478 (497)
Q Consensus       423 ~------~~~~~~-------------~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~  478 (497)
                      .      ...|.+             ...|.++..+  +++++|++++++.+.++.+-..| +.-+.... ...+ +.||
T Consensus       406 lkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHP  485 (506)
T KOG1335|consen  406 LKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHP  485 (506)
T ss_pred             HHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCC
Confidence            1      112211             1346666553  59999999988888887765544 56666554 3443 9999


Q ss_pred             cHHHHHHHHHccCCc
Q 010917          479 SVEEALEIARAALPV  493 (497)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (497)
                      |++||+++|..++..
T Consensus       486 TlSEa~kEa~~aA~~  500 (506)
T KOG1335|consen  486 TLSEAFKEANMAAYD  500 (506)
T ss_pred             cHHHHHHHHHHHhhc
Confidence            999999999988665

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=7.1e-38  Score=320.00  Aligned_cols=331  Identities=23%  Similarity=0.248  Sum_probs=231.6

Q ss_pred             EeecccccccCcccccC--CCCcccccC--CCCchhhhccccccc------c--cccCCCCCcEEEEcCchHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVA------Y--SSFANENREFVIVGGGNAAGYAARTF   79 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~------~--~~~~~~~~~VvIIGgG~AGl~aA~~L   79 (497)
                      ..+||||.++|++|+.+  |+..|.+..  .++++..+.++....      .  .++....++|+||||||||+++|..|
T Consensus        80 ~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l  159 (457)
T PRK11749         80 LETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRL  159 (457)
T ss_pred             HHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHH
Confidence            45799999999999988  988898653  677777776654321      1  22335568999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC
Q 010917           80 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  159 (497)
Q Consensus        80 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~  159 (497)
                      +++|+   +|+|+|+++...-.   +.  +..+....+.+           ......+++++.|+++++++.+.      
T Consensus       160 ~~~g~---~V~lie~~~~~gG~---l~--~gip~~~~~~~-----------~~~~~~~~l~~~gv~~~~~~~v~------  214 (457)
T PRK11749        160 ARKGY---DVTIFEARDKAGGL---LR--YGIPEFRLPKD-----------IVDREVERLLKLGVEIRTNTEVG------  214 (457)
T ss_pred             HhCCC---eEEEEccCCCCCcE---ee--ccCCCccCCHH-----------HHHHHHHHHHHcCCEEEeCCEEC------
Confidence            99998   89999998653200   00  00010000101           11334566788899999886542      


Q ss_pred             CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH---HhhccCCeEEEEcCCHHHHHHHHHHH
Q 010917          160 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAV  236 (497)
Q Consensus       160 ~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~  236 (497)
                      +.+.+++.. +.||+||+|||+.....+.++|.+.+++.+...+.......   ..+..+++|+|||+|++|+|+|..|.
T Consensus       215 ~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~  293 (457)
T PRK11749        215 RDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAK  293 (457)
T ss_pred             CccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHH
Confidence            223333333 68999999999963334456676667776653332222211   11236899999999999999999999


Q ss_pred             hCCC-cEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-----------------
Q 010917          237 GWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-----------------  297 (497)
Q Consensus       237 ~~g~-~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~-----------------  297 (497)
                      +.|. +|+++++.+. .++.  ..    ...+.+++.||++++++.+.++..++ +.+..+.+                 
T Consensus       294 ~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~  366 (457)
T PRK11749        294 RLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVP  366 (457)
T ss_pred             HcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccC
Confidence            9998 8999998654 2221  11    23456789999999999999998543 32223332                 


Q ss_pred             --CCCcEEEcCEEEEeccCcCCCcchh-hcCCccc-CCCEEecC-CCCCCCCcEEEeccccccCCccCCcccccccHHHH
Q 010917          298 --EDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  372 (497)
Q Consensus       298 --~~g~~i~~D~vv~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A  372 (497)
                        .+++++++|.||+++|++|+..++. ..++..+ +|++.||+ +++|+.|+|||+|||+..+.          .+..|
T Consensus       367 ~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----------~~~~A  436 (457)
T PRK11749        367 IEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----------TVVWA  436 (457)
T ss_pred             CCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch----------HHHHH
Confidence              1234799999999999999977764 4566554 57899998 89999999999999995321          45679


Q ss_pred             HHHHHHHHHHHhc
Q 010917          373 RQSAQHCIKALLS  385 (497)
Q Consensus       373 ~~~g~~~a~~i~~  385 (497)
                      +.+|+.+|.+|..
T Consensus       437 ~~~G~~aA~~I~~  449 (457)
T PRK11749        437 VGDGKDAAEAIHE  449 (457)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=100.00  E-value=1.5e-37  Score=332.70  Aligned_cols=326  Identities=21%  Similarity=0.231  Sum_probs=227.7

Q ss_pred             EeecccccccCcccccCCCCcccccC--CCCchhhhccccccc--------cc-cc-CCCCCcEEEEcCchHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA--------YS-SF-ANENREFVIVGGGNAAGYAARTF   79 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~-~~-~~~~~~VvIIGgG~AGl~aA~~L   79 (497)
                      ..+||||.+||++|+.+|..+|.|..  .+++|+.++|+..+.        .. +. ....++|+|||||||||+||+.|
T Consensus       477 ~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L  556 (1012)
T TIGR03315       477 YDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL  556 (1012)
T ss_pred             HHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence            46899999999999999999999965  899999998887642        11 11 23468999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC
Q 010917           80 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  159 (497)
Q Consensus        80 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~  159 (497)
                      +++|+   +|+|+|+++.....   +.  +..+....+.+           ......+++.+.||++++++..       
T Consensus       557 Ar~G~---~VTV~Ek~~~lGG~---l~--~~IP~~rlp~e-----------~l~~~ie~l~~~GVe~~~g~~~-------  610 (1012)
T TIGR03315       557 ARAGH---PVTVFEKKEKPGGV---VK--NIIPEFRISAE-----------SIQKDIELVKFHGVEFKYGCSP-------  610 (1012)
T ss_pred             HHCCC---eEEEEecccccCce---ee--ecccccCCCHH-----------HHHHHHHHHHhcCcEEEEeccc-------
Confidence            99998   89999998653211   00  01111111100           0123345677789999887421       


Q ss_pred             CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH---HhhccCCeEEEEcCCHHHHHHHHHHH
Q 010917          160 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAV  236 (497)
Q Consensus       160 ~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~  236 (497)
                       .+.+++.....||+||||||+.+...+.++|.. +++..  .+.....+.   .....+++|+|||||++|+|+|..+.
T Consensus       611 -d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~--avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~  686 (1012)
T TIGR03315       611 -DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLK--SLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAAL  686 (1012)
T ss_pred             -ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceee--HHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHH
Confidence             112223334679999999999864434444432 23322  112122211   11346899999999999999999988


Q ss_pred             hC-CC-cEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE--------------EeCC
Q 010917          237 GW-KL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV--------------KLED  299 (497)
Q Consensus       237 ~~-g~-~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v--------------~~~~  299 (497)
                      +. |. +|+++++.+. .++. ..    ..+.+. .+.||+++.+..+.+++   ++.+...              ...+
T Consensus       687 Rl~Ga~kVtLVyRr~~~~Mpa-~~----eEl~~a-leeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~  757 (1012)
T TIGR03315       687 RVPGVEKVTVVYRRTKRYMPA-SR----EELEEA-LEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGT  757 (1012)
T ss_pred             HhCCCceEEEEEccCcccccc-CH----HHHHHH-HHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecC
Confidence            76 75 7999998763 3332 22    233333 35799999998888886   1222111              1112


Q ss_pred             C--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCC-CCCCCCcEEEeccccccCCccCCcccccccHHHHHHH
Q 010917          300 G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  375 (497)
Q Consensus       300 g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~  375 (497)
                      |  .++++|.||+|+|..|+.++++++++..+ +|++.||++ ++|+.|+|||+|||+..+.          .+..|+.+
T Consensus       758 Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AIaq  827 (1012)
T TIGR03315       758 GETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAIAD  827 (1012)
T ss_pred             CCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHHHH
Confidence            3  36999999999999999999998888865 578999986 8999999999999986543          45679999


Q ss_pred             HHHHHHHHhcC
Q 010917          376 AQHCIKALLSA  386 (497)
Q Consensus       376 g~~~a~~i~~~  386 (497)
                      |+.||.+|++.
T Consensus       828 Gr~AA~nIl~~  838 (1012)
T TIGR03315       828 GRKAANAILSR  838 (1012)
T ss_pred             HHHHHHHHhcc
Confidence            99999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=2.5e-37  Score=333.11  Aligned_cols=332  Identities=21%  Similarity=0.250  Sum_probs=239.6

Q ss_pred             EeecccccccCccccc--CCCCcccccC---CCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAAR   77 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~aA~   77 (497)
                      ..+||||.+||++|+.  +|..+|.+..   .++++..++|+..+.         +.+.....++|+|||||||||+||.
T Consensus       369 ~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~  448 (752)
T PRK12778        369 KETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAG  448 (752)
T ss_pred             HhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHH
Confidence            4689999999999986  7888898864   478888888866532         1111345789999999999999999


Q ss_pred             HHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEec
Q 010917           78 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI  157 (497)
Q Consensus        78 ~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~  157 (497)
                      .|+++|+   +|+|+|+++...-.   +.  +-.+.    .+++.       .......+++++.|++++.++.+     
T Consensus       449 ~l~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~rlp~-------~~~~~~~~~l~~~gv~~~~~~~v-----  504 (752)
T PRK12778        449 DLAKRGY---DVTVFEALHEIGGV---LK--YGIPE----FRLPK-------KIVDVEIENLKKLGVKFETDVIV-----  504 (752)
T ss_pred             HHHHCCC---eEEEEecCCCCCCe---ee--ecCCC----CCCCH-------HHHHHHHHHHHHCCCEEECCCEE-----
Confidence            9999998   89999986542100   00  10111    11110       00123345678889999987644     


Q ss_pred             CCCEEEECCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHH--------hhccCCeEEEEcCCHHH
Q 010917          158 EKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIG  228 (497)
Q Consensus       158 ~~~~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g  228 (497)
                       .+.+++++.....||+||||||+. |+ .+.++|.+.+++++..++.....+..        ....+++|+|||+|++|
T Consensus       505 -~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a  582 (752)
T PRK12778        505 -GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA  582 (752)
T ss_pred             -CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence             234444444456799999999994 65 45578888888887665544332211        12357999999999999


Q ss_pred             HHHHHHHHhCCCc-EEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--------
Q 010917          229 MEVAAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------  298 (497)
Q Consensus       229 ~e~A~~l~~~g~~-Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--------  298 (497)
                      +|+|..+.++|.+ ||++++.+. .++.    .. ..+ +.+++.||++++++.+.++..++++++..+.+.        
T Consensus       583 ~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----~~-~e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~  656 (752)
T PRK12778        583 MDSARTAKRLGAERVTIVYRRSEEEMPA----RL-EEV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPD  656 (752)
T ss_pred             HHHHHHHHHcCCCeEEEeeecCcccCCC----CH-HHH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcC
Confidence            9999999999997 999998754 2221    11 112 346888999999999999976556666665542        


Q ss_pred             -CC-----------cEEEcCEEEEeccCcCCCcchhhc-CCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCccc
Q 010917          299 -DG-----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  364 (497)
Q Consensus       299 -~g-----------~~i~~D~vv~a~G~~p~~~~~~~~-gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~  364 (497)
                       +|           .++++|.||+|+|+.|+..++... ++..+ +|+|.||++++|+.|+|||+|||+..+.       
T Consensus       657 ~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~-------  729 (752)
T PRK12778        657 ASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA-------  729 (752)
T ss_pred             CCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH-------
Confidence             22           269999999999999998776654 67664 5789999999999999999999997432       


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 010917          365 RVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       365 ~~~~~~~A~~~g~~~a~~i~~  385 (497)
                         .+..|+.+|+.||.+|..
T Consensus       730 ---~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        730 ---TVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             ---HHHHHHHHHHHHHHHHHH
Confidence               445688999999988853

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=3e-37  Score=315.84  Aligned_cols=337  Identities=20%  Similarity=0.217  Sum_probs=235.4

Q ss_pred             EeecccccccCcccccCCCCcccccC--CCCchhhhcccccccc---------cccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAARTFV   80 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~VvIIGgG~AGl~aA~~L~   80 (497)
                      ..+||||.+||++|+.+|..+|.|..  .++++..++|+..+..         .+.....++|+||||||||++||..|+
T Consensus        84 ~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~  163 (471)
T PRK12810         84 HQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA  163 (471)
T ss_pred             HHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence            46899999999999999999999975  7899999988766321         122234679999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917           81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  160 (497)
Q Consensus        81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~  160 (497)
                      ++|+   +|+|+|+++...-.   +.  +..+....+..           ......+++.+.|+++++++.+. .+... 
T Consensus       164 ~~G~---~V~vie~~~~~GG~---l~--~gip~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~-~~~~~-  222 (471)
T PRK12810        164 RAGH---KVTVFERADRIGGL---LR--YGIPDFKLEKE-----------VIDRRIELMEAEGIEFRTNVEVG-KDITA-  222 (471)
T ss_pred             hCCC---cEEEEecCCCCCce---ee--ecCCcccCCHH-----------HHHHHHHHHHhCCcEEEeCCEEC-CcCCH-
Confidence            9998   89999998654210   00  00010000100           01233466788899999986552 22111 


Q ss_pred             EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH--HHH------hhccCCeEEEEcCCHHHHHHH
Q 010917          161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA--LIS------SLEKAKKVVVVGGGYIGMEVA  232 (497)
Q Consensus       161 ~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~--~~~------~~~~~~~vvVvG~G~~g~e~A  232 (497)
                           +.....||+||+|||+.....+.++|.+.+++++..++.....  +..      ....+++|+|||+|++|+|+|
T Consensus       223 -----~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A  297 (471)
T PRK12810        223 -----EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV  297 (471)
T ss_pred             -----HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence                 1112579999999999833345567777788876533222111  111      123579999999999999999


Q ss_pred             HHHHhCCC-cEEEEecCCcchhhccCH----HH-HHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----CC-
Q 010917          233 AAAVGWKL-DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DG-  300 (497)
Q Consensus       233 ~~l~~~g~-~Vtlv~~~~~~~~~~~~~----~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----~g-  300 (497)
                      ..+.+.|. +|++++..+.......+.    .. .....+.+++.||+++++..++++.. +++++..|.+.     +| 
T Consensus       298 ~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~  376 (471)
T PRK12810        298 GTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGD  376 (471)
T ss_pred             HHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCC
Confidence            99888886 788776554332211010    00 11134567889999999999999974 36666655432     22 


Q ss_pred             --------cEEEcCEEEEeccCcCCC-cchhhcCCccc-CCCEEec-CCCCCCCCcEEEeccccccCCccCCcccccccH
Q 010917          301 --------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  369 (497)
Q Consensus       301 --------~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~-~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~  369 (497)
                              +++++|.||+|+|.+|+. .++++++++.+ +|.+.+| ++++|+.|+|||+|||+..+.          .+
T Consensus       377 ~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~~  446 (471)
T PRK12810        377 FEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------LV  446 (471)
T ss_pred             ccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------hH
Confidence                    479999999999999985 57888888775 5779998 799999999999999997432          34


Q ss_pred             HHHHHHHHHHHHHHhc
Q 010917          370 DHARQSAQHCIKALLS  385 (497)
Q Consensus       370 ~~A~~~g~~~a~~i~~  385 (497)
                      ..|+.+|+.||.+|..
T Consensus       447 ~~Av~~G~~AA~~i~~  462 (471)
T PRK12810        447 VWAIAEGRQAARAIDA  462 (471)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5688899999888853

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=100.00  E-value=2.2e-36  Score=308.19  Aligned_cols=332  Identities=20%  Similarity=0.212  Sum_probs=237.1

Q ss_pred             EeecccccccCcccc--cCCCCcccccC--CCCchhhhcccccccc---------cccCCCCCcEEEEcCchHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAART   78 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~VvIIGgG~AGl~aA~~   78 (497)
                      ..+||||.+||++|+  .+|..+|.|..  .++++..++|+..+..         .+...+.++|+||||||+|++||..
T Consensus        80 ~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~  159 (467)
T TIGR01318        80 HQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI  159 (467)
T ss_pred             HHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence            568999999999998  58999999975  7999999988875331         1112356899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC
Q 010917           79 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  158 (497)
Q Consensus        79 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~  158 (497)
                      |+++|+   +|+++|+.+...        +++.. .....+++       .+......+++++.|+++++++.+..    
T Consensus       160 l~~~G~---~V~i~e~~~~~g--------G~l~~-gip~~~~~-------~~~~~~~~~~~~~~Gv~~~~~~~v~~----  216 (467)
T TIGR01318       160 LARAGV---QVVVFDRHPEIG--------GLLTF-GIPSFKLD-------KAVLSRRREIFTAMGIEFHLNCEVGR----  216 (467)
T ss_pred             HHHcCC---eEEEEecCCCCC--------ceeee-cCccccCC-------HHHHHHHHHHHHHCCCEEECCCEeCC----
Confidence            999998   799999986532        11110 00000110       00012345677889999999876621    


Q ss_pred             CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH--HHHHHh---------hccCCeEEEEcCCHH
Q 010917          159 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALISS---------LEKAKKVVVVGGGYI  227 (497)
Q Consensus       159 ~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~~---------~~~~~~vvVvG~G~~  227 (497)
                        .+.+++ ....||+||+|||+.+...+.++|.+.+|+++..++...  ..+...         ...+++++|+|+|++
T Consensus       217 --~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  293 (467)
T TIGR01318       217 --DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT  293 (467)
T ss_pred             --ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence              111111 124799999999998754456678888888865432211  111100         124689999999999


Q ss_pred             HHHHHHHHHhCCC-cEEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 010917          228 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------  298 (497)
Q Consensus       228 g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-------  298 (497)
                      |+++|..+.++|. +||++++.+.. ++. .+.     ..+.+++.||++++++.+.++..++++++..+++.       
T Consensus       294 a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~-----e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  367 (467)
T TIGR01318       294 AMDCVRTAIRLGAASVTCAYRRDEANMPG-SRR-----EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEP  367 (467)
T ss_pred             HHHHHHHHHHcCCCeEEEEEecCcccCCC-CHH-----HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEeccc
Confidence            9999999999995 79999987653 322 122     22446789999999999999975555666555431       


Q ss_pred             --C-----------CcEEEcCEEEEeccCcCCC-cchhhcCCccc-CCCEEec----CCCCCCCCcEEEeccccccCCcc
Q 010917          299 --D-----------GSTIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLKM  359 (497)
Q Consensus       299 --~-----------g~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~-~g~i~vd----~~~~t~~~~iya~GD~~~~~~~~  359 (497)
                        +           .+++++|.||+++|++|+. .+++.++++.+ +|++.||    .+++|+.|+|||+|||+..+.  
T Consensus       368 ~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~--  445 (467)
T TIGR01318       368 DADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD--  445 (467)
T ss_pred             CCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc--
Confidence              1           2379999999999999984 56777777765 5779999    688999999999999987542  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 010917          360 YDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       360 ~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                              .+..|+.+|+.||.+|..
T Consensus       446 --------~~~~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       446 --------LVVTAVAEGRQAAQGILD  463 (467)
T ss_pred             --------HHHHHHHHHHHHHHHHHH
Confidence                    345699999999998863

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=100.00  E-value=2.5e-36  Score=319.11  Aligned_cols=331  Identities=22%  Similarity=0.256  Sum_probs=230.4

Q ss_pred             EeecccccccCcccccCCCCcccccC--CCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAARTFV   80 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~aA~~L~   80 (497)
                      ..+||||.++|++|+.+|+..|.|..  .++.+..++|+..+.         +.+.....++|+||||||||++||..|+
T Consensus       134 ~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La  213 (652)
T PRK12814        134 KETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLL  213 (652)
T ss_pred             HhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence            46899999999999999999998865  677787777776532         1112335689999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917           81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  160 (497)
Q Consensus        81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~  160 (497)
                      +.|+   +|+|+|+++...-.   +.  +..+....+..+           .....+.+.+.|+++++++.+ ..+    
T Consensus       214 ~~G~---~Vtv~e~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~~~~l~~~Gv~i~~~~~v-~~d----  269 (652)
T PRK12814        214 RKGH---DVTIFDANEQAGGM---MR--YGIPRFRLPESV-----------IDADIAPLRAMGAEFRFNTVF-GRD----  269 (652)
T ss_pred             HCCC---cEEEEecCCCCCce---ee--ecCCCCCCCHHH-----------HHHHHHHHHHcCCEEEeCCcc-cCc----
Confidence            9998   89999998654210   00  001101111100           122345667889999987653 222    


Q ss_pred             EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCC
Q 010917          161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL  240 (497)
Q Consensus       161 ~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~  240 (497)
                       +.+++.. ..||+||+|||+.+...+.++|.+.++++...++............+++|+|||+|++|+|+|..+.++|.
T Consensus       270 -v~~~~~~-~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga  347 (652)
T PRK12814        270 -ITLEELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGA  347 (652)
T ss_pred             -cCHHHHH-hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence             1222211 35999999999986444556777777776532222211111124568999999999999999999999986


Q ss_pred             -cEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCc-EEEEEeC---------------CC--
Q 010917          241 -DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-VAAVKLE---------------DG--  300 (497)
Q Consensus       241 -~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~-v~~v~~~---------------~g--  300 (497)
                       +|+++++.+. .++. .+    ..+.+. .+.||+++++..+.++...+++. +..+.+.               +|  
T Consensus       348 ~~Vtlv~r~~~~~mpa-~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~  421 (652)
T PRK12814        348 ESVTILYRRTREEMPA-NR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSE  421 (652)
T ss_pred             CeEEEeeecCcccCCC-CH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCce
Confidence             5999998764 3332 12    223333 46799999999999987542221 2222211               12  


Q ss_pred             cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecC-CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917          301 STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  378 (497)
Q Consensus       301 ~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  378 (497)
                      .++++|.||+++|..|+.++++..++..+ +|++.||+ +++|+.|+|||+|||+..+.          .+..|+.+|+.
T Consensus       422 ~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G~~  491 (652)
T PRK12814        422 FTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQGKR  491 (652)
T ss_pred             EEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHHHH
Confidence            26999999999999999999988888775 57899997 68999999999999987542          45568889999


Q ss_pred             HHHHHh
Q 010917          379 CIKALL  384 (497)
Q Consensus       379 ~a~~i~  384 (497)
                      ||.+|.
T Consensus       492 AA~~I~  497 (652)
T PRK12814        492 AAHAID  497 (652)
T ss_pred             HHHHHH
Confidence            888874

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=100.00  E-value=2.6e-36  Score=329.91  Aligned_cols=332  Identities=17%  Similarity=0.198  Sum_probs=234.7

Q ss_pred             EeecccccccCccccc--CCCCcccccC--CCCchhhhcccccccc-------cccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY-------SSFANENREFVIVGGGNAAGYAARTFV   80 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~VvIIGgG~AGl~aA~~L~   80 (497)
                      ..+||||.+||++|+.  +|..+|.|..  .+++|..++|+..+..       .+...+.++|+|||||||||+||..|+
T Consensus       371 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La  450 (1006)
T PRK12775        371 YEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLV  450 (1006)
T ss_pred             HHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence            4689999999999997  8999999965  7899999988865431       111234689999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917           81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  160 (497)
Q Consensus        81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~  160 (497)
                      ++|+   +|+|+|+.+...-   .+.  +-.+....+.+           ......+++.+.|+++++++.+ .     +
T Consensus       451 ~~G~---~VtV~E~~~~~GG---~l~--~gip~~rl~~e-----------~~~~~~~~l~~~Gv~~~~~~~v-g-----~  505 (1006)
T PRK12775        451 KYGV---DVTVYEALHVVGG---VLQ--YGIPSFRLPRD-----------IIDREVQRLVDIGVKIETNKVI-G-----K  505 (1006)
T ss_pred             HcCC---cEEEEecCCCCcc---eee--ccCCccCCCHH-----------HHHHHHHHHHHCCCEEEeCCcc-C-----C
Confidence            9998   8999998765321   000  00111111111           1234456788899999998543 1     1


Q ss_pred             EEEECCCc-EEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHH---------hhccCCeEEEEcCCHHHH
Q 010917          161 TLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGM  229 (497)
Q Consensus       161 ~v~~~~g~-~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvVvG~G~~g~  229 (497)
                      .+++++-. ...||+||||||+. |+ .+.+||.+.+++++..++.+...+..         ....+++|+|||||++|+
T Consensus       506 ~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~  584 (1006)
T PRK12775        506 TFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAM  584 (1006)
T ss_pred             ccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHH
Confidence            22222111 24699999999995 55 45678888888887655544433211         123689999999999999


Q ss_pred             HHHHHHHhCCCc-EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC----------
Q 010917          230 EVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----------  298 (497)
Q Consensus       230 e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~----------  298 (497)
                      ++|..+.++|.+ |+++.+....-   ++.. ... .+.+++.||++++++.+.++..+++|++..+.+.          
T Consensus       585 D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~-~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~  659 (1006)
T PRK12775        585 DCLRVAKRLGAPTVRCVYRRSEAE---APAR-IEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEK  659 (1006)
T ss_pred             HHHHHHHHcCCCEEEEEeecCccc---CCCC-HHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCC
Confidence            999999999985 78887654321   1111 111 2456789999999999999976556777665431          


Q ss_pred             -------CC--cEEEcCEEEEeccCcCCCcchhh-cCCccc-CCCEEecC-----CCCCCCCcEEEeccccccCCccCCc
Q 010917          299 -------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDR  362 (497)
Q Consensus       299 -------~g--~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~g~  362 (497)
                             +|  .++++|.||+|+|+.|+..++.. .++..+ +|.|.+|+     +++|+.|+|||+|||+..+.     
T Consensus       660 Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~-----  734 (1006)
T PRK12775        660 GRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA-----  734 (1006)
T ss_pred             CCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc-----
Confidence                   12  26999999999999999877654 356654 57799986     78999999999999987542     


Q ss_pred             ccccccHHHHHHHHHHHHHHHh
Q 010917          363 TARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       363 ~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                           .+..|+.+|+.||.+|.
T Consensus       735 -----~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        735 -----TVILAMGAGRRAARSIA  751 (1006)
T ss_pred             -----HHHHHHHHHHHHHHHHH
Confidence                 34457788888887764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=7e-35  Score=283.07  Aligned_cols=284  Identities=23%  Similarity=0.325  Sum_probs=207.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  139 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  139 (497)
                      +||+|||||+||++||..|++.|+   +|+|||+++....        +...  .....+|++.. ..+.+....+.+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~   67 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGGQ--------LTTT--TEVENYPGFPEGISGPELMEKMKEQA   67 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCcc--------eeec--ccccccCCCCCCCChHHHHHHHHHHH
Confidence            589999999999999999999988   8999998752100        0000  00011111110 01111223455667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhhc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE  214 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~  214 (497)
                      ++.++++++ ++|+.+++..+  .+.+.++.++.||+||+|||+.+.. +.+||.+.   .++++.....      ....
T Consensus        68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~-~~i~g~~~~~~~~~~~~~~~~------~~~~  139 (300)
T TIGR01292        68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK-LGIPGEDEFLGRGVSYCATCD------GPFF  139 (300)
T ss_pred             HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc-CCCCChhhcCCccEEEeeecC------hhhc
Confidence            888999998 79999988765  5666777889999999999998863 44555321   2333332111      1234


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      .+++|+|+|+|.+|+|+|..|++.+.+|+++++.+.+..   .    ..+.+.++++ ||++++++++++++.+  +.+.
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~  210 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVGD--NKVE  210 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEcc--CcEE
Confidence            678999999999999999999999999999999876532   2    3455667777 9999999999999843  3444


Q ss_pred             EEEeC-----CCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccc
Q 010917          294 AVKLE-----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  367 (497)
Q Consensus       294 ~v~~~-----~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~  367 (497)
                      .+.+.     +++++++|.+|+|+|++|+.++++.+ +..+ +|++.||++++|++||||++|||+....         .
T Consensus       211 ~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------~  280 (300)
T TIGR01292       211 GVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------R  280 (300)
T ss_pred             EEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch---------h
Confidence            45442     23579999999999999999888877 5543 5789999999999999999999997421         2


Q ss_pred             cHHHHHHHHHHHHHHHh
Q 010917          368 HVDHARQSAQHCIKALL  384 (497)
Q Consensus       368 ~~~~A~~~g~~~a~~i~  384 (497)
                      .+..|+.+|+.||.+|.
T Consensus       281 ~~~~A~~~g~~aa~~i~  297 (300)
T TIGR01292       281 QAVTAAGDGCIAALSAE  297 (300)
T ss_pred             hhhhhhhhHHHHHHHHH
Confidence            56679999999999886

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=5.5e-35  Score=310.32  Aligned_cols=332  Identities=20%  Similarity=0.222  Sum_probs=233.7

Q ss_pred             EeecccccccCcccc--cCCCCcccccC--CCCchhhhcccccccc---------cccCCCCCcEEEEcCchHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAART   78 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~VvIIGgG~AGl~aA~~   78 (497)
                      ..+||||.++|++|+  .+|..+|.+..  .++.|..++|+..+..         .+...+.++|+|||||||||+||..
T Consensus       266 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~  345 (654)
T PRK12769        266 HQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADV  345 (654)
T ss_pred             HHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHH
Confidence            457999999999998  47999998864  7999999888875431         1112356899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC
Q 010917           79 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  158 (497)
Q Consensus        79 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~  158 (497)
                      |++.|+   +|+|+|+.+...        +++.. .....+++       .+...+..+++++.|+++++++.+.. +  
T Consensus       346 L~~~G~---~V~V~E~~~~~G--------G~l~~-gip~~~l~-------~~~~~~~~~~~~~~Gv~~~~~~~v~~-~--  403 (654)
T PRK12769        346 LARNGV---AVTVYDRHPEIG--------GLLTF-GIPAFKLD-------KSLLARRREIFSAMGIEFELNCEVGK-D--  403 (654)
T ss_pred             HHHCCC---eEEEEecCCCCC--------ceeee-cCCCccCC-------HHHHHHHHHHHHHCCeEEECCCEeCC-c--
Confidence            999998   799999876532        11110 00000111       00012234667788999998876521 1  


Q ss_pred             CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHH--HHHHHHH---------hhccCCeEEEEcCCHH
Q 010917          159 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS---------SLEKAKKVVVVGGGYI  227 (497)
Q Consensus       159 ~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~--~~~~~~~---------~~~~~~~vvVvG~G~~  227 (497)
                         +.+++. ...||+|++|||+.....+.+++.+.+|++....+.  .......         ....+++|+|||+|++
T Consensus       404 ---i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  479 (654)
T PRK12769        404 ---ISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDT  479 (654)
T ss_pred             ---CCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHH
Confidence               111111 147999999999975434456777778877532211  1111110         0124789999999999


Q ss_pred             HHHHHHHHHhCCC-cEEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 010917          228 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------  298 (497)
Q Consensus       228 g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-------  298 (497)
                      |+|+|..+.++|. +|+++++.+.. ++.  .+    ...+.+++.||+++++..++++..++++++.+|++.       
T Consensus       480 a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~--~~----~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  553 (654)
T PRK12769        480 AMDCVRTALRHGASNVTCAYRRDEANMPG--SK----KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEP  553 (654)
T ss_pred             HHHHHHHHHHcCCCeEEEeEecCCCCCCC--CH----HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCc
Confidence            9999999999986 69999987653 321  22    223557889999999999999975556776655541       


Q ss_pred             --CC-----------cEEEcCEEEEeccCcCCC-cchhhcCCccc-CCCEEecC----CCCCCCCcEEEeccccccCCcc
Q 010917          299 --DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKM  359 (497)
Q Consensus       299 --~g-----------~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~  359 (497)
                        +|           .++++|.||+|+|+.|+. .++++++++.+ +|.|.+|+    +++|+.|+|||+||++..+.  
T Consensus       554 ~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~--  631 (654)
T PRK12769        554 DAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD--  631 (654)
T ss_pred             CCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc--
Confidence              22           269999999999999985 56788888875 57789986    48999999999999987543  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 010917          360 YDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       360 ~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                              .+..|+.+|+.||.+|..
T Consensus       632 --------~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        632 --------LVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             --------HHHHHHHHHHHHHHHHHH
Confidence                    455699999999998864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=100.00  E-value=6.7e-35  Score=298.43  Aligned_cols=337  Identities=19%  Similarity=0.236  Sum_probs=230.7

Q ss_pred             EeecccccccCcccccCCCCcccccC--CCCchhhhcccccccc------c---ccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV   80 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~VvIIGgG~AGl~aA~~L~   80 (497)
                      ..+||||.++|++|+.+|..+|.+..  .++++..++|+..+..      .   +.....++|+|||||+||++||..|+
T Consensus        84 ~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~  163 (485)
T TIGR01317        84 HATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN  163 (485)
T ss_pred             HhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence            46899999999999999999999965  7888888877764321      1   11234579999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917           81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  160 (497)
Q Consensus        81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~  160 (497)
                      ++|+   +|+|+|+++.....   +.  +..+.......+           .....+++++.|+++++++.+. .+... 
T Consensus       164 ~~g~---~V~v~e~~~~~gG~---l~--~gip~~~~~~~~-----------~~~~~~~~~~~Gv~~~~~~~v~-~~~~~-  222 (485)
T TIGR01317       164 RAGH---TVTVFEREDRCGGL---LM--YGIPNMKLDKAI-----------VDRRIDLLSAEGIDFVTNTEIG-VDISA-  222 (485)
T ss_pred             HcCC---eEEEEecCCCCCce---ee--ccCCCccCCHHH-----------HHHHHHHHHhCCCEEECCCEeC-CccCH-
Confidence            9998   89999998753210   00  000100000000           1233467788999999987663 11111 


Q ss_pred             EEEECCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHH-HHHHH---------HhhccCCeEEEEcCCHHHH
Q 010917          161 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVAD-ADALI---------SSLEKAKKVVVVGGGYIGM  229 (497)
Q Consensus       161 ~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~-~~~~~---------~~~~~~~~vvVvG~G~~g~  229 (497)
                           +.....||+|++|||+. +. .+.++|.+.+|+++...+.. .....         .....+++|+|||+|++|+
T Consensus       223 -----~~~~~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~  296 (485)
T TIGR01317       223 -----DELKEQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGA  296 (485)
T ss_pred             -----HHHHhhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHH
Confidence                 11235799999999998 55 45678887888887543322 11111         1113579999999999999


Q ss_pred             HHHHHHHhCCC-cEEEEecCCcchhhccC----H------HHHHHHHHHHHHCCcEE-EcCCeEEEEEeCCCCcEEEEEe
Q 010917          230 EVAAAAVGWKL-DTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQNGVKF-VKGASIKNLEAGSDGRVAAVKL  297 (497)
Q Consensus       230 e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~----~------~~~~~~~~~l~~~GV~i-~~~~~v~~i~~~~~~~v~~v~~  297 (497)
                      |+|..+.++|. +|+++++.+..+.....    +      +......+..+..||.+ +++..+.+|..++++++..+.+
T Consensus       297 d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~  376 (485)
T TIGR01317       297 DCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRT  376 (485)
T ss_pred             HHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEE
Confidence            99888877774 79999988765532111    0      11222333344457654 5677788887544466666543


Q ss_pred             --------CCC-----------cEEEcCEEEEeccCc-CCCcchhhcCCccc-CCCEE-ecCCCCCCCCcEEEecccccc
Q 010917          298 --------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQ-VDGQFRTRMPGIFAIGDVAAF  355 (497)
Q Consensus       298 --------~~g-----------~~i~~D~vv~a~G~~-p~~~~~~~~gl~~~-~g~i~-vd~~~~t~~~~iya~GD~~~~  355 (497)
                              ++|           +++++|.||+|+|.. |+..+++.++++.+ +|.+. +|++++|+.|+|||+|||+..
T Consensus       377 ~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g  456 (485)
T TIGR01317       377 VRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG  456 (485)
T ss_pred             EEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC
Confidence                    133           279999999999996 88888988888754 56674 467899999999999999864


Q ss_pred             CCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          356 PLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       356 ~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      +.          ....|+.+|+.||.+|..
T Consensus       457 ~~----------~~~~Av~~G~~AA~~i~~  476 (485)
T TIGR01317       457 QS----------LIVWAINEGRKAAAAVDR  476 (485)
T ss_pred             cH----------HHHHHHHHHHHHHHHHHH
Confidence            32          344588888888888753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=8.8e-35  Score=300.65  Aligned_cols=287  Identities=25%  Similarity=0.353  Sum_probs=205.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      ...+||+||||||||++||..|++.|+   +++||++.... .+....+            ..+.+.....+..+...+.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~GG~~~~~~~~------------~~~~~~~~~~~~~l~~~l~  274 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIGGQVKDTVGI------------ENLISVPYTTGSQLAANLE  274 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCccccCcCc------------ccccccCCCCHHHHHHHHH
Confidence            446899999999999999999999998   89999753110 0110010            0111111111111223455


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  211 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~  211 (497)
                      +++++++++++.+++|+.++.+.  ..+.+.++..+.||++|+|||+.++. +.++|..   ..++.+.....      .
T Consensus       275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~~------~  347 (515)
T TIGR03140       275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHCD------G  347 (515)
T ss_pred             HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeeccC------h
Confidence            66777899999999999998765  46677788889999999999999864 4455531   23444432211      1


Q ss_pred             hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCC
Q 010917          212 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG  290 (497)
Q Consensus       212 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~  290 (497)
                      ....+++|+|||+|++|+|+|..|+..+.+||++++.+.+..       ...+.+.+++ .||++++++.+++++.+ ++
T Consensus       348 ~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~  419 (515)
T TIGR03140       348 PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVGD-GD  419 (515)
T ss_pred             hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEcC-CC
Confidence            234689999999999999999999999999999998876643       2345666766 69999999999999743 45


Q ss_pred             cEEEEEeCC---C--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCccc
Q 010917          291 RVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  364 (497)
Q Consensus       291 ~v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~  364 (497)
                      ++..+.+.+   +  +++++|.|++++|.+|++++++.. ++.+ +|+|.||+++||++|+|||+|||+..+...     
T Consensus       420 ~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~-----  493 (515)
T TIGR03140       420 KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQ-----  493 (515)
T ss_pred             EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccce-----
Confidence            665666643   2  479999999999999999998776 6654 578999999999999999999999865421     


Q ss_pred             ccccHHHHHHHHHHHHHHHh
Q 010917          365 RVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       365 ~~~~~~~A~~~g~~~a~~i~  384 (497)
                          +..|+.+|..||.++.
T Consensus       494 ----~~~A~~~G~~Aa~~i~  509 (515)
T TIGR03140       494 ----IIIAMGEGAKAALSAF  509 (515)
T ss_pred             ----EEEEEccHHHHHHHHH
Confidence                1125556666665554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=1.1e-34  Score=283.83  Aligned_cols=273  Identities=20%  Similarity=0.278  Sum_probs=193.0

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  136 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  136 (497)
                      ...+||+|||||||||+||..|+++|+   ++++||.....+..  ...        .....+++... ..+.....++.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~   70 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--TTT--------TEVENWPGDPNDLTGPLLMERMH   70 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCce--ecC--------ceECCCCCCCCCCCHHHHHHHHH
Confidence            346899999999999999999999998   79999854321110  000        00111111100 00011112334


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEEC-CCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHh
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS  212 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~  212 (497)
                      +....++++++.+ +|..++...+.+.+. +...+.||+||+|||+.|+. |.+||.+   ..++++.....      ..
T Consensus        71 ~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~~~~------~~  142 (321)
T PRK10262         71 EHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACATCD------GF  142 (321)
T ss_pred             HHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEeecCC------HH
Confidence            4556677787764 677788766654432 23368999999999999874 5555532   23344332211      12


Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  292 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v  292 (497)
                      ...+++++|||+|++|+|+|..|++++.+|+++++.+.+.   .++.+.+.+++.+++.||++++++.+++++.+ ++.+
T Consensus       143 ~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~  218 (321)
T PRK10262        143 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGV  218 (321)
T ss_pred             HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccE
Confidence            3468999999999999999999999999999999987653   35667788888999999999999999999853 3344


Q ss_pred             EEEEeCCC------cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecC-----CCCCCCCcEEEeccccccC
Q 010917          293 AAVKLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFP  356 (497)
Q Consensus       293 ~~v~~~~g------~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~  356 (497)
                      ..+++.++      +++++|.|++++|.+||..++.. ++..++|+|.||+     +++|+.|+|||+|||+..+
T Consensus       219 ~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~  292 (321)
T PRK10262        219 TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI  292 (321)
T ss_pred             EEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCC
Confidence            45555432      47999999999999999887764 4666678899997     7899999999999999754

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4e-33  Score=254.59  Aligned_cols=375  Identities=21%  Similarity=0.326  Sum_probs=257.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCCCc-----------------cccCCCC-CC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPALTK-----------------GYLFPLD-KK  116 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l~~-----------------~~l~~~~-~~  116 (497)
                      ...+|++|||||-+|+++|+..++.|.   ++.|+|......-   .+-..++                 .|-++.. ..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~   94 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG   94 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence            346899999999999999999999987   8999997732110   0000011                 1111110 00


Q ss_pred             CCCCCCCccccCCCCCCCCHhHH----HHcCcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCCC
Q 010917          117 PARLPGFHTCVGSGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI  190 (497)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~  190 (497)
                      ..++.-+.. -...+..++...|    .+.+|+++.+ +..-+++..-.|...++.  .+++.+++||||++|. .|.+|
T Consensus        95 ~fdW~~ik~-krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIp  171 (478)
T KOG0405|consen   95 SFDWKVIKQ-KRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIP  171 (478)
T ss_pred             CCcHHHHHh-hhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCC
Confidence            011100000 0000111222222    3346777765 444455555567777774  3688999999999997 57766


Q ss_pred             CCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH
Q 010917          191 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  270 (497)
Q Consensus       191 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~  270 (497)
                      |.+     ..   .+++.+++....+++++|+|+|++++|+|..++.+|.+++++.|.+.++.. ||+.+++.+.+.++.
T Consensus       172 G~E-----~g---idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~~  242 (478)
T KOG0405|consen  172 GAE-----LG---IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLEG  242 (478)
T ss_pred             chh-----hc---cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhhh
Confidence            543     22   245666666678999999999999999999999999999999999999964 899999999999999


Q ss_pred             CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEE
Q 010917          271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF  347 (497)
Q Consensus       271 ~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iy  347 (497)
                      +||++|.+++++++.+..++... +....|+...+|.++||+|+.||+.-  +++.|++.+ +|.|.||++.+||+|+||
T Consensus       243 ~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~  321 (478)
T KOG0405|consen  243 RGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIW  321 (478)
T ss_pred             cceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceE
Confidence            99999999999999887666543 44556665669999999999999864  678888876 677999999999999999


Q ss_pred             EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---CCCCCCCCceeeeccccCCCCcceeeEEeecCCCc--
Q 010917          348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--  422 (497)
Q Consensus       348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~--  422 (497)
                      ++||+++-          ++....|..+|+..++.+.++.   ...|..+|.   .+|.++.      +..+|..+.+  
T Consensus       322 avGDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~---vVFshP~------igtVGLtE~EAi  382 (478)
T KOG0405|consen  322 AVGDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYENVPC---VVFSHPP------IGTVGLTEEEAI  382 (478)
T ss_pred             EeccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccccCce---EEEecCC------cccccCCHHHHH
Confidence            99999974          2344568999999999999743   246777874   5665543      2234443321  


Q ss_pred             -------E-EEEccC-----------CCcEEEEEE--ECCEEEEEEeecCChHHhh-HHHHHHhCCC
Q 010917          423 -------T-IEIGNF-----------DPKIATFWI--DSGKLKGVLVESGSPEEFQ-LLPTLARSQP  467 (497)
Q Consensus       423 -------~-~~~~~~-----------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~  467 (497)
                             + ++...|           +.-+.++..  ++++++|+++++.+..++. -+.-.++.+.
T Consensus       383 ekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGa  449 (478)
T KOG0405|consen  383 EKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGA  449 (478)
T ss_pred             HHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCc
Confidence                   1 112222           122344444  4689999998777665543 3334455553

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=6.2e-34  Score=300.88  Aligned_cols=332  Identities=18%  Similarity=0.211  Sum_probs=233.6

Q ss_pred             EeecccccccCcccc--cCCCCcccccC--CCCchhhhcccccccc---------cccCCCCCcEEEEcCchHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAART   78 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~VvIIGgG~AGl~aA~~   78 (497)
                      ..+||||.++|++|+  .+|..+|.+..  .++++..++|+..+..         .+...+.++|+|||||||||++|..
T Consensus       249 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~  328 (639)
T PRK12809        249 HQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADI  328 (639)
T ss_pred             HHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHH
Confidence            467999999999998  57999998864  7999999988766321         1123357899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC
Q 010917           79 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  158 (497)
Q Consensus        79 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~  158 (497)
                      |++.|+   +|+++|+++...        +.+.- ...+.+++.       .......+++++.|+++++++++..    
T Consensus       329 L~~~G~---~Vtv~e~~~~~G--------G~l~~-gip~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~~----  385 (639)
T PRK12809        329 LARAGV---QVDVFDRHPEIG--------GMLTF-GIPPFKLDK-------TVLSQRREIFTAMGIDFHLNCEIGR----  385 (639)
T ss_pred             HHHcCC---cEEEEeCCCCCC--------Ceeec-cCCcccCCH-------HHHHHHHHHHHHCCeEEEcCCccCC----
Confidence            999998   799999987532        11100 000111110       0012234677889999999876521    


Q ss_pred             CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH--HHHHH---------hhccCCeEEEEcCCHH
Q 010917          159 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYI  227 (497)
Q Consensus       159 ~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~~  227 (497)
                        .+.+++ ....||+|++|||+.+...+.+++.+.+|+++...+...  ..+..         ....+++|+|+|+|.+
T Consensus       386 --~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~  462 (639)
T PRK12809        386 --DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDT  462 (639)
T ss_pred             --cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHH
Confidence              111211 124799999999998654455677777887763222211  11110         0125789999999999


Q ss_pred             HHHHHHHHHhCCC-cEEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---C----
Q 010917          228 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---E----  298 (497)
Q Consensus       228 g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~----  298 (497)
                      ++++|..+.++|. +||++++++.. ++. ...    .+ ..+++.||++++++.+++|..++++++..+.+   .    
T Consensus       463 a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~----e~-~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  536 (639)
T PRK12809        463 TMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK----EV-VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEP  536 (639)
T ss_pred             HHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH----HH-HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCc
Confidence            9999999989985 79999987644 321 111    22 23578899999999999997655666665532   1    


Q ss_pred             --CC-----------cEEEcCEEEEeccCcCCC-cchhhcCCccc-CCCEEecC----CCCCCCCcEEEeccccccCCcc
Q 010917          299 --DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKM  359 (497)
Q Consensus       299 --~g-----------~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~  359 (497)
                        +|           .++++|.||+|+|+.|+. .++++++++.+ +|.|.+|+    +++|+.|+|||+|||+..+.  
T Consensus       537 ~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~--  614 (639)
T PRK12809        537 GPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD--  614 (639)
T ss_pred             CCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch--
Confidence              12           369999999999999974 56777888765 57788885    48999999999999987543  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 010917          360 YDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       360 ~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                              .+..|+.+|+.||.+|..
T Consensus       615 --------~vv~Ai~~Gr~AA~~i~~  632 (639)
T PRK12809        615 --------LVVTAMAAGRQAARDMLT  632 (639)
T ss_pred             --------HHHHHHHHHHHHHHHHHH
Confidence                    445689999999988864

>PRK13984 putative oxidoreductase; Provisional

Probab=100.00  E-value=5.6e-34  Score=301.07  Aligned_cols=328  Identities=20%  Similarity=0.227  Sum_probs=223.3

Q ss_pred             eecccccccCcccccCCCCcccccC--CCCchhhhcccccccc----------cccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917           13 VSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY----------SSFANENREFVIVGGGNAAGYAARTFV   80 (497)
Q Consensus        13 ~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~VvIIGgG~AGl~aA~~L~   80 (497)
                      ..||||..||++|+.+|..+|.+..  .++.+..++|+..+..          .+.....++|+|||+|+||+++|..|+
T Consensus       224 ~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~  303 (604)
T PRK13984        224 KTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLA  303 (604)
T ss_pred             hcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHH
Confidence            3799999999999999999999964  6777777665443221          112345789999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917           81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  160 (497)
Q Consensus        81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~  160 (497)
                      ++|+   +|+|+|+++...-.   +.  +..+....+.++           .....+++++.|++++.++.|.. +    
T Consensus       304 ~~G~---~v~vie~~~~~gG~---~~--~~i~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~-~----  359 (604)
T PRK13984        304 TMGY---EVTVYESLSKPGGV---MR--YGIPSYRLPDEA-----------LDKDIAFIEALGVKIHLNTRVGK-D----  359 (604)
T ss_pred             HCCC---eEEEEecCCCCCce---Ee--ecCCcccCCHHH-----------HHHHHHHHHHCCcEEECCCEeCC-c----
Confidence            9998   89999998753210   00  001111111100           12234677889999999876631 1    


Q ss_pred             EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh-------ccCCeEEEEcCCHHHHHHHH
Q 010917          161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVAA  233 (497)
Q Consensus       161 ~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~-------~~~~~vvVvG~G~~g~e~A~  233 (497)
                       +..++ ....||+||+|||+.+.+.+.++|.+.++++...  .....+...+       ..+++|+|||||++|+|+|.
T Consensus       360 -~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~--~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~  435 (604)
T PRK13984        360 -IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL--PLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIAR  435 (604)
T ss_pred             -CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHH--HHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHH
Confidence             11111 1357999999999975334566777677766532  2222222111       23689999999999999999


Q ss_pred             HHHhCCC------cEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---------
Q 010917          234 AAVGWKL------DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------  298 (497)
Q Consensus       234 ~l~~~g~------~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---------  298 (497)
                      .+.+++.      +|+++...... . .++... ..+.+ +.+.||+++++..+.++.. +++++..+.+.         
T Consensus       436 ~l~r~~~~~~g~~~V~v~~~~r~~-~-~~~~~~-~e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~  510 (604)
T PRK13984        436 SMARLQKMEYGEVNVKVTSLERTF-E-EMPADM-EEIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEE  510 (604)
T ss_pred             HHHhccccccCceEEEEeccccCc-c-cCCCCH-HHHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCC
Confidence            9998753      68886432111 1 112111 12333 3468999999999988864 35666555432         


Q ss_pred             ----------CCcEEEcCEEEEeccCcCCCcchhh-c--CCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917          299 ----------DGSTIDADTIVIGIGAKPTVSPFER-V--GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  365 (497)
Q Consensus       299 ----------~g~~i~~D~vv~a~G~~p~~~~~~~-~--gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~  365 (497)
                                +++++++|.||+|+|++|+++++.. +  ++..++|+|.||++++|++|+|||+|||+..+.        
T Consensus       511 G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~--------  582 (604)
T PRK13984        511 GRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD--------  582 (604)
T ss_pred             CCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH--------
Confidence                      1247999999999999999887653 2  355556789999999999999999999997542        


Q ss_pred             cccHHHHHHHHHHHHHHHh
Q 010917          366 VEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       366 ~~~~~~A~~~g~~~a~~i~  384 (497)
                         ...|+.+|+.||.+|.
T Consensus       583 ---~v~Ai~~G~~AA~~I~  598 (604)
T PRK13984        583 ---IIHGVADGYWAAEGID  598 (604)
T ss_pred             ---HHHHHHHHHHHHHHHH
Confidence               2358888998888875

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=3e-33  Score=289.63  Aligned_cols=288  Identities=22%  Similarity=0.309  Sum_probs=206.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      ...+||+||||||||++||.+|++.|+   +++||++.........           .....++++....+..+...+.+
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~GG~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~  274 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERFGGQVLDT-----------MGIENFISVPETEGPKLAAALEE  274 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCeeecc-----------CcccccCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999998   8999976421100000           00011111112222222345566


Q ss_pred             HHHHcCcEEEeCCcEEEEecC--CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHh
Q 010917          138 WYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS  212 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~--~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~  212 (497)
                      .+++++++++.+++|..++..  ...+.+.++..+.||+||+|||+.++. +.+||..   ..++++....   +   ..
T Consensus       275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~~~---~---~~  347 (517)
T PRK15317        275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCPHC---D---GP  347 (517)
T ss_pred             HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEeecc---C---ch
Confidence            778889999999999999876  346777888889999999999998864 4455531   2344443211   1   11


Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCc
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR  291 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~  291 (497)
                      ...+++|+|||+|++|+|+|..|+..+.+|+++++.+.+..   +    +.+.+.+.+ .||++++++.++++..+ +++
T Consensus       348 ~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~  419 (517)
T PRK15317        348 LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTGD-GDK  419 (517)
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEcC-CCc
Confidence            24689999999999999999999999999999999876542   2    244555665 69999999999999853 456


Q ss_pred             EEEEEeCC---C--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917          292 VAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  365 (497)
Q Consensus       292 v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~  365 (497)
                      +..+.+.+   |  +++++|.+++++|.+|++++++.. +..+ +|+|.||++++|+.|+|||+|||+..+..       
T Consensus       420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k-------  491 (517)
T PRK15317        420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYK-------  491 (517)
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCC-------
Confidence            66666543   3  369999999999999999998876 5554 57899999999999999999999986542       


Q ss_pred             cccHHHHHHHHHHHHHHHh
Q 010917          366 VEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       366 ~~~~~~A~~~g~~~a~~i~  384 (497)
                        .+..|+.+|..||.++.
T Consensus       492 --~~~~A~~eG~~Aa~~~~  508 (517)
T PRK15317        492 --QIIIAMGEGAKAALSAF  508 (517)
T ss_pred             --EEEEhhhhHHHHHHHHH
Confidence              12225555555555543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=100.00  E-value=5e-32  Score=275.24  Aligned_cols=324  Identities=28%  Similarity=0.350  Sum_probs=265.9

Q ss_pred             EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHc
Q 010917           63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK  142 (497)
Q Consensus        63 VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (497)
                      ++|||+|+||+++|..|++... +.+++++..++...|.+++++..+..... ....+.           .... +..+.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~-~~~~~   66 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGIA-SLEDLR-----------YPPR-FNRAT   66 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhcccC-CHHHhc-----------ccch-hHHhh
Confidence            5899999999999999999875 77999999999998988888764433221 111110           1112 33577


Q ss_pred             CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEE
Q 010917          143 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  222 (497)
Q Consensus       143 ~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv  222 (497)
                      ++++..+++|+.+|+..+.+.+.++ ++.||+|++|||+.+...+   +....++++++...+...+.......++++|+
T Consensus        67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv  142 (415)
T COG0446          67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV  142 (415)
T ss_pred             CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence            8999999999999999999999999 7999999999999988544   55578899999999988888776667899999


Q ss_pred             cCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE-EEeCCCc
Q 010917          223 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS  301 (497)
Q Consensus       223 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~-v~~~~g~  301 (497)
                      |+|++|+|+|..++++|++|++++..++++++.+.+.+.+.+.+.++++||+++++..+.+++...+..... +...++.
T Consensus       143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  222 (415)
T COG0446         143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE  222 (415)
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence            999999999999999999999999999999863328899999999999999999999999998653322211 5778889


Q ss_pred             EEEcCEEEEeccCcCCCcchhhcC--CcccCCCEEecCCCCCC-CCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917          302 TIDADTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  378 (497)
Q Consensus       302 ~i~~D~vv~a~G~~p~~~~~~~~g--l~~~~g~i~vd~~~~t~-~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  378 (497)
                      .+++|.+++++|.+||..+..+.+  +...+|++.||++++|+ .++|||+|||+..+....+......+++.+..+++.
T Consensus       223 ~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i  302 (415)
T COG0446         223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI  302 (415)
T ss_pred             EEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHH
Confidence            999999999999999977777765  45556789999999997 999999999999876654455567789999999999


Q ss_pred             HHHHHhcCCCCCCCCCCceeeeccccC
Q 010917          379 CIKALLSAQTHTYDYLPYFYSRVFEYE  405 (497)
Q Consensus       379 ~a~~i~~~~~~~~~~~p~~~~~~~~~~  405 (497)
                      ++.++.+. .......++.|.++++..
T Consensus       303 ~~~~~~~~-~~~~~~~~~~~~~~~~~~  328 (415)
T COG0446         303 AAENIAGA-LRIPGLLGTVISDVGDLC  328 (415)
T ss_pred             HHHHhccc-cccccccCceEEEEcCeE
Confidence            99999865 333356788888888753

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-33  Score=265.39  Aligned_cols=266  Identities=26%  Similarity=0.372  Sum_probs=206.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCc-EEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  136 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~-V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  136 (497)
                      +.+||+|||||||||+||.++++.+.   + ++|+|+...-         +++.... ....+|++.. ..+.++.....
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l---~~~li~~~~~~g---------g~~~~~~-~venypg~~~~~~g~~L~~~~~   68 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGL---KVVLILEGGEPG---------GQLTKTT-DVENYPGFPGGILGPELMEQMK   68 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCC---CcEEEEecCCcC---------Cccccce-eecCCCCCccCCchHHHHHHHH
Confidence            45899999999999999999999987   5 6666665332         1111111 3455666655 44555555666


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  211 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~  211 (497)
                      ++....++++.. ..|..++...  +.|+++++. +.+++||||||..++. +..++..   ..+++++..   ++.   
T Consensus        69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cdg---  139 (305)
T COG0492          69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CDG---  139 (305)
T ss_pred             HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cCc---
Confidence            667778999887 6888888774  578888888 9999999999999875 4444321   246777743   232   


Q ss_pred             hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCC
Q 010917          212 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDG  290 (497)
Q Consensus       212 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~  290 (497)
                       +.++|+|+|+|||.+++|.|..|.+.+.+||+++|++.+.+       .+.+.+.++++ +|++++++.+.++..+  +
T Consensus       140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~  209 (305)
T COG0492         140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILGD--D  209 (305)
T ss_pred             -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEecC--c
Confidence             35688999999999999999999999999999999987764       23444555655 8999999999999843  3


Q ss_pred             cEEEEEeCCC----cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCC
Q 010917          291 RVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  357 (497)
Q Consensus       291 ~v~~v~~~~g----~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~  357 (497)
                       +..+.+.+.    +.+++|-+++++|..|++++++..+...++|+|.||+.++||+|+|||+|||+..+.
T Consensus       210 -v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~  279 (305)
T COG0492         210 -VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG  279 (305)
T ss_pred             -cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence             556777663    378999999999999999999998885567899999999999999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=1.5e-32  Score=285.93  Aligned_cols=285  Identities=20%  Similarity=0.294  Sum_probs=197.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      +.+||+|||||||||+||..|+++|+   +|+|||++.....         +.. ......+++.....+....+.+.+.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG~---------~~~-~~~i~~~pg~~~~~~~~l~~~l~~~   69 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGGQ---------ITI-TSEVVNYPGILNTTGPELMQEMRQQ   69 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCce---------EEe-ccccccCCCCcCCCHHHHHHHHHHH
Confidence            35899999999999999999999988   8999998643210         000 0001111221111111112334455


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHhh
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL  213 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~  213 (497)
                      +++.+++++ +++|+.++.+..  .+.+.++ .+.||+||||||+.|+. |.++|.+   ..+++++.....      ..
T Consensus        70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~~------~~  140 (555)
T TIGR03143        70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCDG------EF  140 (555)
T ss_pred             HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecCh------hh
Confidence            667899986 568998887653  4555555 58999999999999874 5555532   234554432211      23


Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      ..+++|+|||+|++|+|+|..|.++|.+|+++++.+.+..   .....   .+.++++||++++++.|+++..  ++.+.
T Consensus       141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v~  212 (555)
T TIGR03143       141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--DDGLR  212 (555)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcEE
Confidence            4689999999999999999999999999999999886532   22222   2334557999999999999973  33333


Q ss_pred             EEE---eCCCcE----EEcCE----EEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCC
Q 010917          294 AVK---LEDGST----IDADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  361 (497)
Q Consensus       294 ~v~---~~~g~~----i~~D~----vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g  361 (497)
                      .+.   ..+|+.    +++|.    |++++|++|++.+++. ++..+ +|+|.||++++|+.|+|||+|||+....    
T Consensus       213 ~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~----  287 (555)
T TIGR03143       213 YAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL----  287 (555)
T ss_pred             EEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc----
Confidence            332   245653    23676    9999999999998775 45554 5789999999999999999999975321    


Q ss_pred             cccccccHHHHHHHHHHHHHHH
Q 010917          362 RTARVEHVDHARQSAQHCIKAL  383 (497)
Q Consensus       362 ~~~~~~~~~~A~~~g~~~a~~i  383 (497)
                           ..+..|..+|+.||.+|
T Consensus       288 -----~~v~~A~~~G~~Aa~~i  304 (555)
T TIGR03143       288 -----RQVVTAVADGAIAATSA  304 (555)
T ss_pred             -----chheeHHhhHHHHHHHH
Confidence                 13345777888887777

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=100.00  E-value=2.6e-32  Score=285.64  Aligned_cols=330  Identities=22%  Similarity=0.253  Sum_probs=224.4

Q ss_pred             EeecccccccCcccccCCCCcccccC--CCCchhhhccccccc--------ccccCCCCCcEEEEcCchHHHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA--------YSSFANENREFVIVGGGNAAGYAARTFVE   81 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~~~VvIIGgG~AGl~aA~~L~~   81 (497)
                      ..+||||.++|++|+.+|..+|.|..  .++.++.++|+..+.        ..+.....++|+|||+||+||++|..|++
T Consensus        79 ~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~  158 (564)
T PRK12771         79 TKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRR  158 (564)
T ss_pred             HHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            46799999999999999999999965  678888888764221        11123457899999999999999999999


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcE-EEEecCCC
Q 010917           82 HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV-TSIDIEKQ  160 (497)
Q Consensus        82 ~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v-~~i~~~~~  160 (497)
                      .|+   +|+++|+.+.....   +.  +..+....+.++           .....+++.+.|+++..++.+ ..+..+. 
T Consensus       159 ~G~---~V~v~e~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~-  218 (564)
T PRK12771        159 MGH---AVTIFEAGPKLGGM---MR--YGIPAYRLPREV-----------LDAEIQRILDLGVEVRLGVRVGEDITLEQ-  218 (564)
T ss_pred             CCC---eEEEEecCCCCCCe---ee--ecCCCccCCHHH-----------HHHHHHHHHHCCCEEEeCCEECCcCCHHH-
Confidence            998   79999998754210   00  001111111000           112234567789999887654 2221111 


Q ss_pred             EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCC-
Q 010917          161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK-  239 (497)
Q Consensus       161 ~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g-  239 (497)
                             ....||+||+|||+.......+++....++...-.+............+++++|+|+|.++++.+..+.+++ 
T Consensus       219 -------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga  291 (564)
T PRK12771        219 -------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGA  291 (564)
T ss_pred             -------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence                   113589999999987543334455555555543222211111111235789999999999999999999998 


Q ss_pred             CcEEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE----EEEEe----CC-------C--c
Q 010917          240 LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----AAVKL----ED-------G--S  301 (497)
Q Consensus       240 ~~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v----~~v~~----~~-------g--~  301 (497)
                      .+|+++.+.+.. ++. ..    ..+ +...+.||+++++..+.++...+++.+    ..+..    .+       |  .
T Consensus       292 ~~v~ii~r~~~~~~~~-~~----~~~-~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~  365 (564)
T PRK12771        292 EEVTIVYRRTREDMPA-HD----EEI-EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEE  365 (564)
T ss_pred             CEEEEEEecCcccCCC-CH----HHH-HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceE
Confidence            679999887542 211 11    222 234678999999999999975544432    11221    12       2  3


Q ss_pred             EEEcCEEEEeccCcCCCcchhh-cCCcccCCCEEecC-CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917          302 TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  379 (497)
Q Consensus       302 ~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~  379 (497)
                      ++++|.||+|+|..|+..++++ .++..++|++.||+ +++|+.|+|||+|||+..+.          .+..|+.+|+.+
T Consensus       366 ~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G~~a  435 (564)
T PRK12771        366 TLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHGKKA  435 (564)
T ss_pred             EEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHHHHH
Confidence            7999999999999999888875 56665578899998 78899999999999987432          456688888888


Q ss_pred             HHHHh
Q 010917          380 IKALL  384 (497)
Q Consensus       380 a~~i~  384 (497)
                      |.+|.
T Consensus       436 A~~i~  440 (564)
T PRK12771        436 ARNID  440 (564)
T ss_pred             HHHHH
Confidence            88873

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=1.1e-31  Score=265.50  Aligned_cols=289  Identities=24%  Similarity=0.280  Sum_probs=198.6

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      +...++|+|||||++|+++|..|++.|+   +|+++|+.+.....   +..+  .+....+.+.           .....
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~---~~~~--~~~~~~~~~~-----------~~~~~   75 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGGL---MLFG--IPEFRIPIER-----------VREGV   75 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCce---eeec--CcccccCHHH-----------HHHHH
Confidence            3456799999999999999999999987   89999998653210   0000  0000000000           11233


Q ss_pred             hHHHHcCcEEEeCCcEEEEec----CC-----CEEEECCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHH
Q 010917          137 EWYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADA  206 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~----~~-----~~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~  206 (497)
                      +.+.+.+++++.++.+..++.    ..     ..+..+ +..+.||+||||||+. +. .|.++|.+.++++...+  ..
T Consensus        76 ~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~~--~~  151 (352)
T PRK12770         76 KELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSALE--YL  151 (352)
T ss_pred             HHHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC-cCCCCCccccCceeHHH--HH
Confidence            456667999998877754432    01     111111 1237899999999995 44 46667766667665321  11


Q ss_pred             HHHHH---------h--hccCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917          207 DALIS---------S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       207 ~~~~~---------~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                      ..+..         .  ...+++++|+|+|++|+|+|..|.+.|.+ |+++++.+....    + ......+.|+++||+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~gi~  226 (352)
T PRK12770        152 FRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA----P-AGKYEIERLIARGVE  226 (352)
T ss_pred             HHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcCCE
Confidence            11111         0  11368999999999999999999999997 999988754221    1 113345668999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEe--------------------CCCcEEEcCEEEEeccCcCCCcchhh-cCCccc-CCC
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGG  332 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~--------------------~~g~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~-~g~  332 (497)
                      +++++.+.+++..  +.+..+.+                    .+++++++|.||+++|++|++.+..+ +++..+ +|+
T Consensus       227 i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~  304 (352)
T PRK12770        227 FLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGE  304 (352)
T ss_pred             EeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCc
Confidence            9999999998743  33433332                    12357999999999999999887766 777664 467


Q ss_pred             EEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          333 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       333 i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      +.||++++|+.|+|||+|||+..+.          .+..|+.+|+.+|.+|..
T Consensus       305 i~vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        305 IVVDEKHMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             EeeCCCcccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987542          456789999999988853

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.97  E-value=2.5e-30  Score=243.33  Aligned_cols=294  Identities=21%  Similarity=0.327  Sum_probs=213.7

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      ...+++|||+|+|.+|.+.+..|-...+   +|++|++.+++.|. |.|+..-...-+  ...+           .+...
T Consensus        52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve--~rSI-----------vEPIr  114 (491)
T KOG2495|consen   52 GGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVE--LRSI-----------VEPIR  114 (491)
T ss_pred             CCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCcccccee--ehhh-----------hhhHH
Confidence            4567899999999999999999888766   89999999998776 444321111000  0000           11122


Q ss_pred             hHHHHc--CcEEEeCCcEEEEecCCCEEEEC----CC----cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH
Q 010917          137 EWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA  206 (497)
Q Consensus       137 ~~~~~~--~v~~~~~~~v~~i~~~~~~v~~~----~g----~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~  206 (497)
                      ....+.  ++.++. .+.+.+|++++.|++.    ++    ..+.||+||+|+|+.+.. ..+||- .++.+.++.++++
T Consensus       115 ~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~dA  191 (491)
T KOG2495|consen  115 AIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVEDA  191 (491)
T ss_pred             HHhhccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhHH
Confidence            223333  456654 6888999999987653    34    368999999999999885 444443 2233456677777


Q ss_pred             HHHHHhhc-----------------cCCeEEEEcCCHHHHHHHHHHHhC--------------CCcEEEEecCCcchhhc
Q 010917          207 DALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRL  255 (497)
Q Consensus       207 ~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~~~~~  255 (497)
                      .+++..+-                 .--++||||||++|+|+|.+|+..              -.+||+++..+.+++ .
T Consensus       192 qeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-m  270 (491)
T KOG2495|consen  192 QEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-M  270 (491)
T ss_pred             HHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-H
Confidence            77644321                 012699999999999999998643              357999999999997 4


Q ss_pred             cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcchhhcCCccc---C
Q 010917          256 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS---V  330 (497)
Q Consensus       256 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~---~  330 (497)
                      |+..+.++.++.+.+.||++..++.|.+++..   . ..+...+|  ++|++-.+||++|..|. ++.+.+....+   +
T Consensus       271 Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---~-I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~r  345 (491)
T KOG2495|consen  271 FDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---T-IHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGR  345 (491)
T ss_pred             HHHHHHHHHHHHhhhccceeecccEEEeecCc---E-EEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCc
Confidence            89999999999999999999999999998732   2 23444455  57999999999999886 44444433332   3


Q ss_pred             CCEEecCCCCC-CCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 010917          331 GGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  383 (497)
Q Consensus       331 g~i~vd~~~~t-~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i  383 (497)
                      .++.||+++|. +.+||||+|||+..+..       .++.+.|.+||.++|+++
T Consensus       346 r~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~f  392 (491)
T KOG2495|consen  346 RGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNF  392 (491)
T ss_pred             eeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHH
Confidence            47999999998 89999999999954332       226677999999999988

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.97  E-value=6.5e-29  Score=250.20  Aligned_cols=294  Identities=18%  Similarity=0.262  Sum_probs=189.0

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHH--cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVE--HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ  134 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~--~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  134 (497)
                      ....++|+|||||||||+||..|++  .|+   +|+|+|+.+.. |.   +......+.......+           ...
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~---~Vtv~E~~p~p-gG---lvr~gvaP~~~~~k~v-----------~~~   84 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGA---RVDIIERLPTP-FG---LVRSGVAPDHPETKNV-----------TNQ   84 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCC---eEEEEecCCCC-cc---eEeeccCCCcchhHHH-----------HHH
Confidence            3456899999999999999999997  565   89999998753 22   1110011111111000           122


Q ss_pred             CHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHH-------HH
Q 010917          135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------AD  207 (497)
Q Consensus       135 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~-------~~  207 (497)
                      +..++...+++++.+..+      .+.+.+++-. ..||+||||||+.+...+.++|.+.+|++...++..       ..
T Consensus        85 ~~~~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~  157 (491)
T PLN02852         85 FSRVATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCV  157 (491)
T ss_pred             HHHHHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhh
Confidence            344566678988876444      2233443332 479999999999864455678888899987755421       11


Q ss_pred             HHHHhhccCCeEEEEcCCHHHHHHHHHHHhC--------------------CC-cEEEEecCCcchhhccCHHH------
Q 010917          208 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTTIIFPENHLLQRLFTPSL------  260 (497)
Q Consensus       208 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~-~Vtlv~~~~~~~~~~~~~~~------  260 (497)
                      .+...+..+++|+|||+|++|+|+|..|.+.                    +. +|+++.|+...-..+...++      
T Consensus       158 ~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l  237 (491)
T PLN02852        158 HLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL  237 (491)
T ss_pred             hhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence            1111234689999999999999999998875                    54 59999988632111111111      


Q ss_pred             -------------------------------HHHHHHHHHH---------CCcEEEcCCeEEEEEeC--CCCcEEEEEeC
Q 010917          261 -------------------------------AQRYEQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE  298 (497)
Q Consensus       261 -------------------------------~~~~~~~l~~---------~GV~i~~~~~v~~i~~~--~~~~v~~v~~~  298 (497)
                                                     .+.+.+...+         ++|.|++...+++|..+  +++++.++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~  317 (491)
T PLN02852        238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLE  317 (491)
T ss_pred             CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEE
Confidence                                           1112222222         57999999999999743  23567666552


Q ss_pred             -----------------CC--cEEEcCEEEEeccCc--CCCcc-hh-hcCCcc-cCCCEEecCCCCCCCCcEEEeccccc
Q 010917          299 -----------------DG--STIDADTIVIGIGAK--PTVSP-FE-RVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAA  354 (497)
Q Consensus       299 -----------------~g--~~i~~D~vv~a~G~~--p~~~~-~~-~~gl~~-~~g~i~vd~~~~t~~~~iya~GD~~~  354 (497)
                                       +|  ++++||.||.++|++  |...+ +. ..++.. .+|+|.+|+.++|+.|+|||+|||..
T Consensus       318 ~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~  397 (491)
T PLN02852        318 RTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKR  397 (491)
T ss_pred             EeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEec
Confidence                             23  269999999999998  55443 32 233433 36889999888999999999999998


Q ss_pred             cCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          355 FPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       355 ~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      .+...         +..++..|+.++.+|+
T Consensus       398 Gp~gv---------I~t~~~dA~~ta~~i~  418 (491)
T PLN02852        398 GPTGI---------IGTNLTCAEETVASIA  418 (491)
T ss_pred             CCCCe---------eeecHhhHHHHHHHHH
Confidence            66532         2234455555555554

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-27  Score=218.18  Aligned_cols=208  Identities=27%  Similarity=0.435  Sum_probs=165.0

Q ss_pred             EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          169 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       169 ~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .+.++.+|||||.+|+ +|.+||..    .+.   .+++++......+.+-+|||+|++++|+|.+|+..|.+||+..|+
T Consensus       159 ~~ta~~fvIatG~RPr-Yp~IpG~~----Ey~---ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS  230 (503)
T KOG4716|consen  159 FLTAENFVIATGLRPR-YPDIPGAK----EYG---ITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS  230 (503)
T ss_pred             EeecceEEEEecCCCC-CCCCCCce----eee---ecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence            5789999999999998 57655532    222   235666666667778889999999999999999999999999886


Q ss_pred             CcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEeccCcCCCcc--h
Q 010917          249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--F  321 (497)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~~D~vv~a~G~~p~~~~--~  321 (497)
                      -. + +.||.++.+.+.+.++++||+|...+.+.+++..++++.. |...   .+  -+-++|.|+||+|+.+.++-  +
T Consensus       231 I~-L-rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L  307 (503)
T KOG4716|consen  231 IL-L-RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNL  307 (503)
T ss_pred             ee-c-ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeecccccccccchhhhhhhhhccccchhhcCC
Confidence            43 3 4599999999999999999999999888888887777642 3222   22  24679999999999998764  5


Q ss_pred             hhcCCccc--CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCc
Q 010917          322 ERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPY  396 (497)
Q Consensus       322 ~~~gl~~~--~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~  396 (497)
                      +..|+..+  .|.|.+|+.-+|++|+|||+||+....         .|....|++.|+.+|+.|.++..  ..|..+|.
T Consensus       308 ~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~T  377 (503)
T KOG4716|consen  308 DNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVAT  377 (503)
T ss_pred             CccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCce
Confidence            66777763  578999999999999999999998743         33556699999999999997654  36666664

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.96  E-value=2.9e-27  Score=260.63  Aligned_cols=281  Identities=16%  Similarity=0.148  Sum_probs=194.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..+||+|||||||||+||.+|++.|+   +|+|+|+++...-        .+....   ..+++..   ..++.....+.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~GG--------~~~~~~---~~~~g~~---~~~~~~~~~~~  224 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAGG--------SLLSEA---ETIDGKP---AADWAAATVAE  224 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCCC--------eeeccc---cccCCcc---HHHHHHHHHHH
Confidence            35799999999999999999999998   8999999865321        111000   0011000   00001122333


Q ss_pred             HHHc-CcEEEeCCcEEEEecCCCEEEE-----------CC---C--cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEec
Q 010917          139 YKEK-GIEMIYQDPVTSIDIEKQTLIT-----------NS---G--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR  201 (497)
Q Consensus       139 ~~~~-~v~~~~~~~v~~i~~~~~~v~~-----------~~---g--~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~  201 (497)
                      +... +++++.+++|..++........           ..   +  ..+.||+||||||+.++. ++++|.+.+++.+..
T Consensus       225 l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~-~pipG~~~pgV~~~~  303 (985)
T TIGR01372       225 LTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP-LVFANNDRPGVMLAG  303 (985)
T ss_pred             HhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC-CCCCCCCCCCcEEch
Confidence            4444 5999999999887653321111           00   1  158999999999999874 556888889998764


Q ss_pred             CHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917          202 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  280 (497)
Q Consensus       202 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~  280 (497)
                      ........ .....+++|+|+|+|++|+|+|..|++.|.+ |++++..+.+.         ..+.+.+++.||++++++.
T Consensus       304 ~~~~~l~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L~~~GV~i~~~~~  373 (985)
T TIGR01372       304 AARTYLNR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEARELGIEVLTGHV  373 (985)
T ss_pred             HHHHHHHh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHHHHcCCEEEcCCe
Confidence            43322111 1123679999999999999999999999964 78887765432         2355678999999999999


Q ss_pred             EEEEEeCCCCcEEEEEeC----CCcEEEcCEEEEeccCcCCCcchhhcCCccc--C--CCEEecCCCCCCCCcEEEeccc
Q 010917          281 IKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFAIGDV  352 (497)
Q Consensus       281 v~~i~~~~~~~v~~v~~~----~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~--g~i~vd~~~~t~~~~iya~GD~  352 (497)
                      ++++..  ++.+..|++.    ++++++||.|+++.|.+||++++..++....  .  +...    -.|+.|+||++|||
T Consensus       374 v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~  447 (985)
T TIGR01372       374 VAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAA  447 (985)
T ss_pred             EEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEEeecc
Confidence            999973  4445455543    4568999999999999999999988876542  1  1111    13779999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      ++..           ....|..+|+.||..++
T Consensus       448 ~g~~-----------~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       448 NGLF-----------GLAAALADGAAAGAAAA  468 (985)
T ss_pred             CCcc-----------CHHHHHHHHHHHHHHHH
Confidence            9754           34457888888887764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.95  E-value=1.3e-26  Score=244.02  Aligned_cols=287  Identities=11%  Similarity=0.076  Sum_probs=178.7

Q ss_pred             EEeecccccccC-cccccCCCCcccccC-CCCchhhhccccccc------------------------ccccCCCCCcEE
Q 010917           11 ASVSNSLSFKHG-LSLWCPQSPSLHRIR-HSSAKNFQRRGFVVA------------------------YSSFANENREFV   64 (497)
Q Consensus        11 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------~~~~~~~~~~Vv   64 (497)
                      ...+||||.+|| ++|+ +|..+|.+.. .+++|+.++|+..+.                        +.+...+.++|+
T Consensus       309 i~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVa  387 (1028)
T PRK06567        309 IVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNIL  387 (1028)
T ss_pred             HHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEE
Confidence            346899999999 8887 7999998865 799999998854321                        112335678999


Q ss_pred             EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC--C---------CCCCccccC-CCCCCCCCCCCCccccCCC
Q 010917           65 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YE--R---------PALTKGYLF-PLDKKPARLPGFHTCVGSG  130 (497)
Q Consensus        65 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~--~---------~~l~~~~l~-~~~~~~~~~~~~~~~~~~~  130 (497)
                      |||||||||+||++|++.||   +||++|+.+..+  |.  .         +.+...... ........++         
T Consensus       388 VVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp---------  455 (1028)
T PRK06567        388 VTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT---------  455 (1028)
T ss_pred             EECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc---------
Confidence            99999999999999999999   899999864321  11  0         111100000 0000011110         


Q ss_pred             CCCCCHhHH------HHcC--cEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEec
Q 010917          131 GERQTPEWY------KEKG--IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIR  201 (497)
Q Consensus       131 ~~~~~~~~~------~~~~--v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~-~~~~~~~~~g~~~~gv~~~~  201 (497)
                       .+...+.+      .+.+  ++++.++.+ .     ..++.++-....||+|+||||+ .++ .+.++|.+.+++....
T Consensus       456 -~R~~k~~l~~i~~il~~g~~v~~~~gv~l-G-----~dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda~GV~sA~  527 (1028)
T PRK06567        456 -VRWDKNNLDILRLILERNNNFKYYDGVAL-D-----FNITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEAKGVKTAS  527 (1028)
T ss_pred             -ccchHHHHHHHHHHHhcCCceEEECCeEE-C-----ccCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccCCCeEEHH
Confidence             11122222      2223  555545332 1     1222222123579999999999 566 4567887778887654


Q ss_pred             CHHHHHHHHHh--------hccCCeEEEEcCCHHHHHHHHHHHh------------------------------------
Q 010917          202 DVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG------------------------------------  237 (497)
Q Consensus       202 ~~~~~~~~~~~--------~~~~~~vvVvG~G~~g~e~A~~l~~------------------------------------  237 (497)
                      ++.........        ...+++|+|||||++|+|+|.....                                    
T Consensus       528 DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~  607 (1028)
T PRK06567        528 DFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLF  607 (1028)
T ss_pred             HHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhh
Confidence            43322211110        1236899999999999999984332                                    


Q ss_pred             ---------------CCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC----
Q 010917          238 ---------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----  298 (497)
Q Consensus       238 ---------------~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~----  298 (497)
                                     .| .|+++.|+..--.. ......+.+.+ ..+.||+|+.+..+.+|..+++|++.++++.    
T Consensus       608 g~~~~~~~v~~l~~~~G-~VtIvYRr~~~emp-A~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~  684 (1028)
T PRK06567        608 KEAKNNEELRKVFNKLG-GATVYYRGRLQDSP-AYKLNHEELIY-ALALGVDFKENMQPLRINVDKYGHVESVEFENRNR  684 (1028)
T ss_pred             cchhccchhhhhhccCC-ceEEEecCChhhCC-CCCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEec
Confidence                           23 28888877532111 00001223333 4678999999999999986656777655442    


Q ss_pred             ----------C----------------CcEEEcCEEEEeccCcCCCcch
Q 010917          299 ----------D----------------GSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       299 ----------~----------------g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                                +                ..+++||.||+|+|..||+.+.
T Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~  733 (1028)
T PRK06567        685 HCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD  733 (1028)
T ss_pred             ccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc
Confidence                      1                1469999999999999998763

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2e-26  Score=198.36  Aligned_cols=278  Identities=21%  Similarity=0.283  Sum_probs=196.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  136 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  136 (497)
                      ..+.+|+|||+|||+..||+++++.-.   +-+|+|-.-.-    ..-+.+.|. .....+.+|+|+. ..|.++.+..+
T Consensus         6 ~h~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~~~~----~i~pGGQLt-TTT~veNfPGFPdgi~G~~l~d~mr   77 (322)
T KOG0404|consen    6 THNENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGMMAN----GIAPGGQLT-TTTDVENFPGFPDGITGPELMDKMR   77 (322)
T ss_pred             eeeeeEEEEccCchHHHHHHHHhhccc---CceEEeeeecc----CcCCCceee-eeeccccCCCCCcccccHHHHHHHH
Confidence            345699999999999999999999865   67777753211    011122222 2345677888876 56677777778


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHh--
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS--  212 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~--  212 (497)
                      ++..+.|.+++. .+|.+++...+  ++.+ +.+.+.+|.+|+|||+..+++. .||.. ++-+.-+.+..+.-....  
T Consensus        78 kqs~r~Gt~i~t-EtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~g-e~~fWqrGiSaCAVCDGaap  153 (322)
T KOG0404|consen   78 KQSERFGTEIIT-ETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGEG-EGEFWQRGISACAVCDGAAP  153 (322)
T ss_pred             HHHHhhcceeee-eehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCCC-cchHHhcccchhhcccCcch
Confidence            888889999987 47888887665  4555 4445899999999999987754 23321 111111122222111111  


Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCc-
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-  291 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~-  291 (497)
                      +..+|..+|||||.+++|-|.+|.+.+.+|++++|++.+..+   ..   +.++..+..+|++++++.+.+...+ .+. 
T Consensus       154 ifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs---~~---Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l  226 (322)
T KOG0404|consen  154 IFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS---KI---MQQRAEKNPNIEVLYNTVAVEALGD-GKLL  226 (322)
T ss_pred             hhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH---HH---HHHHHhcCCCeEEEechhhhhhccC-cccc
Confidence            246889999999999999999999999999999999977653   11   2234456678999999987776532 222 


Q ss_pred             ----EEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEec-CCCCCCCCcEEEecccccc
Q 010917          292 ----VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAF  355 (497)
Q Consensus       292 ----v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd-~~~~t~~~~iya~GD~~~~  355 (497)
                          +..+.+.+.+.++.+-+++++|..|++.+++. .++.+ +|+|++- ..-.||+|++||+||+...
T Consensus       227 ~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~  295 (322)
T KOG0404|consen  227 NGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK  295 (322)
T ss_pred             cceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH
Confidence                22333334457999999999999999999987 45554 6788876 4677999999999999864

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.94  E-value=1.3e-26  Score=231.08  Aligned_cols=337  Identities=23%  Similarity=0.216  Sum_probs=231.3

Q ss_pred             EeecccccccCcccccC--CCCccccc--CCCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCP--QSPSLHRI--RHSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAART   78 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~aA~~   78 (497)
                      ..+|+||..+|+.|+.+  |..+|-..  ..++++..+.++..+.         ..+.....++|.|||||||||+||..
T Consensus        62 ~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~  141 (457)
T COG0493          62 HKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADD  141 (457)
T ss_pred             HHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHH
Confidence            45799999999999977  88899885  4888998887776632         12224456899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC
Q 010917           79 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  158 (497)
Q Consensus        79 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~  158 (497)
                      |++.|+   .||++|+.+...-    +. .|-.+..+.+.++           ..+..+.+++.|++|++++++-     
T Consensus       142 L~~~G~---~Vtv~e~~~~~GG----ll-~yGIP~~kl~k~i-----------~d~~i~~l~~~Gv~~~~~~~vG-----  197 (457)
T COG0493         142 LSRAGH---DVTVFERVALDGG----LL-LYGIPDFKLPKDI-----------LDRRLELLERSGVEFKLNVRVG-----  197 (457)
T ss_pred             HHhCCC---eEEEeCCcCCCce----eE-EecCchhhccchH-----------HHHHHHHHHHcCeEEEEcceEC-----
Confidence            999999   8999998865320    00 0112222222222           3455678889999999987653     


Q ss_pred             CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh---------ccCCeEEEEcCCHHHH
Q 010917          159 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGM  229 (497)
Q Consensus       159 ~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~---------~~~~~vvVvG~G~~g~  229 (497)
                       +.++++.- .-.||+++++||+.-.....++|.+.++++...++..........         ..+++|+|||+|.+++
T Consensus       198 -~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~  275 (457)
T COG0493         198 -RDITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM  275 (457)
T ss_pred             -CcCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHH
Confidence             11221111 136799999999875444566787788887654443332211111         1248999999999999


Q ss_pred             HHHHHHHhCCC-cEEEEecCCcchh-hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---------
Q 010917          230 EVAAAAVGWKL-DTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------  298 (497)
Q Consensus       230 e~A~~l~~~g~-~Vtlv~~~~~~~~-~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---------  298 (497)
                      +++....++|. +|+.+.+...--. ...+........+...++|+.+.+.....++..+++|++..+.+.         
T Consensus       276 D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~  355 (457)
T COG0493         276 DCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVD  355 (457)
T ss_pred             HHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCccc
Confidence            99999999998 5777653221100 001112234455667889999999999999987777877655331         


Q ss_pred             ----------CC--cEEEcCEEEEeccCcCCCcch--hhcCCccc-CCCEEecCCC-CCCCCcEEEeccccccCCccCCc
Q 010917          299 ----------DG--STIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLKMYDR  362 (497)
Q Consensus       299 ----------~g--~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~-~t~~~~iya~GD~~~~~~~~~g~  362 (497)
                                .|  .++++|.|+.++|+.++....  ...++..+ .|.+.+|+.+ +|+.|++||.||+.....     
T Consensus       356 ~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~-----  430 (457)
T COG0493         356 GWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA-----  430 (457)
T ss_pred             ccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh-----
Confidence                      12  368899999999998874432  22234443 5889999988 999999999999998533     


Q ss_pred             ccccccHHHHHHHHHHHHHHHh
Q 010917          363 TARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       363 ~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                           .+-.|+.+|+.+|+.|.
T Consensus       431 -----~vv~ai~eGr~aak~i~  447 (457)
T COG0493         431 -----LVVWAIAEGREAAKAID  447 (457)
T ss_pred             -----hhhhHHhhchHHHHhhh
Confidence                 33447778888777664

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.2e-26  Score=209.44  Aligned_cols=271  Identities=21%  Similarity=0.315  Sum_probs=195.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      ...+||+||||||||-+||.+.+++|...  =.+-|+-.....+            ....+.+...+...|..+...+.+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRT--Gl~aerfGGQvld------------T~~IENfIsv~~teGpkl~~ale~  274 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRT--GLVAERFGGQVLD------------TMGIENFISVPETEGPKLAAALEA  274 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchh--hhhhhhhCCeecc------------ccchhheeccccccchHHHHHHHH
Confidence            45689999999999999999999999731  1122221111011            001112222222222222344566


Q ss_pred             HHHHcCcEEEeCCcEEEEecC-----CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHH
Q 010917          138 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL  209 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~-----~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~  209 (497)
                      ..+++.|++....+++.+.+.     ...|++++|..+..+.+|+|||++.+.+ ++||.+   -.|+.++..-   +  
T Consensus       275 Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~-nvPGE~e~rnKGVayCPHC---D--  348 (520)
T COG3634         275 HVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNM-NVPGEDEYRNKGVAYCPHC---D--  348 (520)
T ss_pred             HHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcC-CCCchHHHhhCCeeeCCCC---C--
Confidence            677889998876777777763     3489999999999999999999998754 456643   3577777532   2  


Q ss_pred             HHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCC
Q 010917          210 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~  288 (497)
                       ..+.++|+|+|||||++|+|.|..|+..-.+||+++-.+.+-.   |    +.+++.+.. .+|+++.+..-++|..+ 
T Consensus       349 -GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA---D----~VLq~kl~sl~Nv~ii~na~Ttei~Gd-  419 (520)
T COG3634         349 -GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA---D----AVLQDKLRSLPNVTIITNAQTTEVKGD-  419 (520)
T ss_pred             -CcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh---H----HHHHHHHhcCCCcEEEecceeeEEecC-
Confidence             2356899999999999999999999999899999986665432   2    234444544 48999999999999843 


Q ss_pred             CCcEEEEEeCC---C--cEEEcCEEEEeccCcCCCcchhhcCCcc-cCCCEEecCCCCCCCCcEEEeccccccCCc
Q 010917          289 DGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLK  358 (497)
Q Consensus       289 ~~~v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~  358 (497)
                      +.++.++...+   |  ..++-+-|++-+|..||++|++.. ++. ..|-|.||....||.|+|||+|||+..++.
T Consensus       420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yK  494 (520)
T COG3634         420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYK  494 (520)
T ss_pred             CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccc
Confidence            35666665543   3  357788899999999999999988 554 467799999999999999999999987764

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.93  E-value=1.9e-24  Score=218.91  Aligned_cols=289  Identities=17%  Similarity=0.174  Sum_probs=181.9

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCC-----------------CCccccCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPA-----------------LTKGYLFPLDK  115 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~-----------------l~~~~l~~~~~  115 (497)
                      +...++|+|||||+|||+||++|++.|+   +++++|+++...    |....                 +...+......
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~   83 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR   83 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence            3446899999999999999999999998   899999987543    21000                 00000000000


Q ss_pred             C---CCCCCCCcc-----------ccCCCCCCCCHhHHHHcCcE--EEeCCcEEEEecCCC--EEEECCC--c--EEEec
Q 010917          116 K---PARLPGFHT-----------CVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYG  173 (497)
Q Consensus       116 ~---~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~--~v~~~~g--~--~i~~d  173 (497)
                      .   ..++|....           ..+.+..+++.++.++.++.  ++++++|+.+++.+.  .|++.++  .  +..||
T Consensus        84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d  163 (461)
T PLN02172         84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD  163 (461)
T ss_pred             hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence            0   001111100           01122233445555677887  888999999987654  4554432  2  45799


Q ss_pred             cEEeccC--CCCCcCCCCCCC-CCCcE-EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          174 SLIVATG--CTASRFPEKIGG-YLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       174 ~lvlAtG--~~~~~~~~~~g~-~~~gv-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      +||+|||  +.|+ .|.++|. ..+|. .+..++.+.+     ..++|+|+|||+|.+|+|+|..|...+.+|+++++..
T Consensus       164 ~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        164 AVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             EEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            9999999  5565 4666664 23442 1212222221     2368999999999999999999999999999999875


Q ss_pred             cchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc
Q 010917          250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS  329 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~  329 (497)
                      .+..          + ..+......+..+..|..+..  ++   .|++.||+++++|.||+|+|++++.++++..+    
T Consensus       238 ~~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~----  297 (461)
T PLN02172        238 ESDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNG----  297 (461)
T ss_pred             cccc----------c-ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCccc----
Confidence            3211          0 011112234455666766652  33   47889999999999999999999999887543    


Q ss_pred             CCCEEecCCC------C---CC-CCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917          330 VGGIQVDGQF------R---TR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       330 ~g~i~vd~~~------~---t~-~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                        .+.+|++.      .   .. .|+++.+|=....           ..+..+..|++.+|+.+.|..
T Consensus       298 --~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~  352 (461)
T PLN02172        298 --YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV  352 (461)
T ss_pred             --ceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence              33343321      1   12 4899999943211           133457789999998887643

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.90  E-value=1.4e-23  Score=215.41  Aligned_cols=331  Identities=19%  Similarity=0.264  Sum_probs=198.1

Q ss_pred             EeecccccccCcccccCCCCcccccC--CCCchhh---------hcccccccccccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNF---------QRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFV   80 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~   80 (497)
                      ..+|+||..+|+.|+.||..+|.-..  .++.+..         ..+-+..+-+|...+.++|.|||+|||||+||..|.
T Consensus      1726 l~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqln 1805 (2142)
T KOG0399|consen 1726 LETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLN 1805 (2142)
T ss_pred             HhhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHh
Confidence            35799999999999999999997632  3443333         333333333444566799999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCC----CCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEe
Q 010917           81 EHGMADGRLCIVSKEAYAP----YERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSID  156 (497)
Q Consensus        81 ~~g~~~~~V~lie~~~~~~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~  156 (497)
                      +.||   .|+++|+.+...    |..|.+         +...    +       ..++-.+.+.+.||+|..++++-   
T Consensus      1806 k~gh---~v~vyer~dr~ggll~ygipnm---------kldk----~-------vv~rrv~ll~~egi~f~tn~eig--- 1859 (2142)
T KOG0399|consen 1806 KAGH---TVTVYERSDRVGGLLMYGIPNM---------KLDK----F-------VVQRRVDLLEQEGIRFVTNTEIG--- 1859 (2142)
T ss_pred             hcCc---EEEEEEecCCcCceeeecCCcc---------chhH----H-------HHHHHHHHHHhhCceEEeecccc---
Confidence            9999   899999987642    211111         0000    0       01233456788899999987652   


Q ss_pred             cCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH--HHHH-------hhccCCeEEEEcCCHH
Q 010917          157 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS-------SLEKAKKVVVVGGGYI  227 (497)
Q Consensus       157 ~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~--~~~~-------~~~~~~~vvVvG~G~~  227 (497)
                         +.+.+ |+-.-.+|++|+|+|+...+-.+++|.++.|++..-.+.+..  .+..       ...++|+|+|||||.+
T Consensus      1860 ---k~vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdt 1935 (2142)
T KOG0399|consen 1860 ---KHVSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDT 1935 (2142)
T ss_pred             ---ccccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCc
Confidence               22222 222247899999999874333346788888887544333221  1111       1136899999999999


Q ss_pred             HHHHHHHHHhCCCcEE-EEecCCc---------chh---hccCHHHHH-HHHHHHHHCCcEEEcCCe-EEEEEeCCCCcE
Q 010917          228 GMEVAAAAVGWKLDTT-IIFPENH---------LLQ---RLFTPSLAQ-RYEQLYQQNGVKFVKGAS-IKNLEAGSDGRV  292 (497)
Q Consensus       228 g~e~A~~l~~~g~~Vt-lv~~~~~---------~~~---~~~~~~~~~-~~~~~l~~~GV~i~~~~~-v~~i~~~~~~~v  292 (497)
                      |.++...-.+.|++-. -++--+.         ++|   +.|--+... ..++   .-|-+..+-+- -+++..+++|.+
T Consensus      1936 g~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~---~~g~dpr~y~vltk~f~~~~~g~v 2012 (2142)
T KOG0399|consen 1936 GTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKE---HYGSDPRTYSVLTKRFIGDDNGNV 2012 (2142)
T ss_pred             cccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHH---HhCCCcceeeeeeeeeeccCCCce
Confidence            9999988888887532 2221111         111   111111111 1111   11221111111 112222223322


Q ss_pred             EEE------------------EeCC-CcEEEcCEEEEeccCc-CCCcchhhcCCccc-CCCEEe-cCCCCCCCCcEEEec
Q 010917          293 AAV------------------KLED-GSTIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIG  350 (497)
Q Consensus       293 ~~v------------------~~~~-g~~i~~D~vv~a~G~~-p~~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~iya~G  350 (497)
                      .++                  +..+ .+.++||+|++|.|+. |.....++++++.+ ++.|.+ ++.+.|+++.+||+|
T Consensus      2013 ~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaag 2092 (2142)
T KOG0399|consen 2013 TGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAG 2092 (2142)
T ss_pred             eeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecc
Confidence            222                  2222 2579999999999997 54456788888876 333443 456889999999999


Q ss_pred             cccccCCccCCcccccccHHHHHHHHHHHHH
Q 010917          351 DVAAFPLKMYDRTARVEHVDHARQSAQHCIK  381 (497)
Q Consensus       351 D~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~  381 (497)
                      ||-.....      .+..++.+++.|+.+-.
T Consensus      2093 dcrrgqsl------vvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2093 DCRRGQSL------VVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred             cccCCceE------EEEEehhhhHHHHHHHH
Confidence            99885543      23344444444444433

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.88  E-value=9.9e-22  Score=201.61  Aligned_cols=300  Identities=22%  Similarity=0.300  Sum_probs=156.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC--------------CCCcccc-CCCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP--------------ALTKGYL-FPLDKKPARL  120 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~--------------~l~~~~l-~~~~~~~~~~  120 (497)
                      .++|+|||||++||++|+.|.+.|+   +++++|+++...    |...              ..++... +.....+.+.
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~   77 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY   77 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence            3799999999999999999999998   899999998654    1110              1111111 2222333444


Q ss_pred             CCCccccCCCCCCCCHhHHHHcCc--EEEeCCcEEEEecCC-------CEEEECC-Cc--EEEeccEEeccCCCCCc-CC
Q 010917          121 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTASR-FP  187 (497)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~-------~~v~~~~-g~--~i~~d~lvlAtG~~~~~-~~  187 (497)
                      |.+..  .....+++..+.++.++  .++++++|+++....       ..|++.+ |+  +..||+||+|||....+ +|
T Consensus        78 p~f~~--~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P  155 (531)
T PF00743_consen   78 PDFPS--HSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP  155 (531)
T ss_dssp             SSSEB--HHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred             CCCCC--HHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence            43322  11223344555566666  478899999987532       2466644 32  45799999999975321 23


Q ss_pred             C--CCCCC-CCc-EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc-hhhcc------
Q 010917          188 E--KIGGY-LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQRLF------  256 (497)
Q Consensus       188 ~--~~g~~-~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~~------  256 (497)
                      .  .+|.+ .+| +.+..++.+.     ...++|+|+|||+|.+|+++|..|+..+.+|++..|+..+ +++..      
T Consensus       156 ~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  156 EPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             ----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             hhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence            2  33321 222 2222222221     2347999999999999999999999999999988877432 22111      


Q ss_pred             ----------------CHHHHHHH-HHH--------------------------------HHHCCcEEEcCCeEEEEEeC
Q 010917          257 ----------------TPSLAQRY-EQL--------------------------------YQQNGVKFVKGASIKNLEAG  287 (497)
Q Consensus       257 ----------------~~~~~~~~-~~~--------------------------------l~~~GV~i~~~~~v~~i~~~  287 (497)
                                      +..+.+.+ .+.                                +....|++.  ..|.+++.+
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~~  308 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTEN  308 (531)
T ss_dssp             --------------------------------------------------------------------E--E-EEEE-SS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccc
Confidence                            00011111 000                                111122222  123344321


Q ss_pred             CCCcEEEEEeCCCcEE-EcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCC---CCCCCcEEEeccccccCCccCCcc
Q 010917          288 SDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF---RTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       288 ~~~~v~~v~~~~g~~i-~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~---~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                            ++.+.||+++ ++|.||+|||++.+.+++++.-+...++.+..-.++   +...|++..+|=+...     |  
T Consensus       309 ------~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-----g--  375 (531)
T PF00743_consen  309 ------SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-----G--  375 (531)
T ss_dssp             ------EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-----S--
T ss_pred             ------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----c--
Confidence                  5778999875 699999999999988888776444433333222221   1235788888854321     1  


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCC
Q 010917          364 ARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                         ..+..+..||+.+|+-+.|..
T Consensus       376 ---~~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  376 ---SIFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTSS
T ss_pred             ---ccccccccccccccccccccc
Confidence               134557889999998877543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.87  E-value=1.7e-21  Score=172.07  Aligned_cols=265  Identities=26%  Similarity=0.375  Sum_probs=176.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      +.+|||||+||.+||..|+..-. ..+|.|+..++..    .|..-   ..|+...+-.                   +.
T Consensus         1 kfivvgggiagvscaeqla~~~p-sa~illitass~vksvtn~~~i---~~ylekfdv~-------------------eq   57 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEP-SAEILLITASSFVKSVTNYQKI---GQYLEKFDVK-------------------EQ   57 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCC-CCcEEEEeccHHHHHHhhHHHH---HHHHHhcCcc-------------------cc
Confidence            46899999999999999999875 7799999987642    11110   0011100000                   00


Q ss_pred             HHHHcCcEEE--eCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhcc
Q 010917          138 WYKEKGIEMI--YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  215 (497)
Q Consensus       138 ~~~~~~v~~~--~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  215 (497)
                      -....|-++.  ++ .|..++...+.+++.+|..+.|++|+++||++|...-  .+ --+-+...++.+....+...+.+
T Consensus        58 ~~~elg~~f~~~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~k  133 (334)
T KOG2755|consen   58 NCHELGPDFRRFLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVK  133 (334)
T ss_pred             chhhhcccHHHHHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhh
Confidence            0111111111  12 2556677788999999999999999999999987432  22 23556677777777888888889


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCC------------cEEEcC-----
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG------------VKFVKG-----  278 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~G------------V~i~~~-----  278 (497)
                      .|.|.|+|.|-+++|++..+..  .+|++....+.+...+++|.+...+...+...+            ++.+.+     
T Consensus       134 aK~VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~  211 (334)
T KOG2755|consen  134 AKIVLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENN  211 (334)
T ss_pred             cceEEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccC
Confidence            9999999999999999998755  479998888888888888888777766551110            100000     


Q ss_pred             ------------CeEEEEEeCCCC-------cEE---------EEEe---CCC--cEEEcCEEEEeccCcCCCcchhhcC
Q 010917          279 ------------ASIKNLEAGSDG-------RVA---------AVKL---EDG--STIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       279 ------------~~v~~i~~~~~~-------~v~---------~v~~---~~g--~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                                  -....+...++.       .+.         .++.   ..+  ..+.||.+++|+|..||.+++-...
T Consensus       212 vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~  291 (334)
T KOG2755|consen  212 VGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKM  291 (334)
T ss_pred             cccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecCh
Confidence                        000000000000       000         0110   111  3688999999999999999765444


Q ss_pred             Ccc-cCCCEEecCCCCCCCCcEEEecccccc
Q 010917          326 LNS-SVGGIQVDGQFRTRMPGIFAIGDVAAF  355 (497)
Q Consensus       326 l~~-~~g~i~vd~~~~t~~~~iya~GD~~~~  355 (497)
                      +.. ++|++.||+.|+|+.|++||+||++..
T Consensus       292 lq~~edggikvdd~m~tslpdvFa~gDvctt  322 (334)
T KOG2755|consen  292 LQITEDGGIKVDDAMETSLPDVFAAGDVCTT  322 (334)
T ss_pred             hhhccccCeeehhhccccccceeeecceecc
Confidence            443 578999999999999999999999983

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.85  E-value=2.5e-20  Score=169.23  Aligned_cols=295  Identities=20%  Similarity=0.282  Sum_probs=193.4

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCC--ccccCCCCCCCCCCCCCccccCCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT--KGYLFPLDKKPARLPGFHTCVGSGGERQ  134 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~  134 (497)
                      ....++|+|||||.+|+..|..+.++-. .++|-++|+.+.+.|+ |...  ++.+...+....                
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~srr----------------   97 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSRR----------------   97 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchhhcccC-cceEEeccchhhhhhccC----------------
Confidence            3456899999999999999999988754 6799999999888776 4432  211211111110                


Q ss_pred             CHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCC----CCCCcEEEecCHHHHHHHH
Q 010917          135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALI  210 (497)
Q Consensus       135 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g----~~~~gv~~~~~~~~~~~~~  210 (497)
                      ....+--.+...+. ..|..++++.++|.+.+|++|.||++|||+|..-+ +..++|    .+.|+|-...+....+...
T Consensus        98 ~~a~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y  175 (446)
T KOG3851|consen   98 KQASLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVY  175 (446)
T ss_pred             cccccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHH
Confidence            00011111222222 46788899999999999999999999999998755 455554    3456776666555555554


Q ss_pred             Hhhc---cCCeEE--------EEcCCHHHHHHHHH-HHhCCCc--EEEEec--CCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917          211 SSLE---KAKKVV--------VVGGGYIGMEVAAA-AVGWKLD--TTIIFP--ENHLLQRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       211 ~~~~---~~~~vv--------VvG~G~~g~e~A~~-l~~~g~~--Vtlv~~--~~~~~~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                      +.+.   .+.-+-        .-|+-.-.+-++.. ++++|.+  +.++..  -+.++.   -....+.+++..++++|+
T Consensus       176 ~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~  252 (446)
T KOG3851|consen  176 KELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNIT  252 (446)
T ss_pred             HHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceE
Confidence            4433   333222        23444444444444 4556653  444433  333332   245678888889999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecC-CCCC-CCCcEEEe
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAI  349 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~-~~~t-~~~~iya~  349 (497)
                      +.......++..+ +...+--.+.+ |  ++++++++-+....++. +.+..+.+.+..|++.||. .+|. ..||||++
T Consensus       253 vn~krnLiEV~~~-~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgi  330 (446)
T KOG3851|consen  253 VNYKRNLIEVRTN-DRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGI  330 (446)
T ss_pred             eeeccceEEEecc-chhhHHHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceee
Confidence            9999999998754 22111111222 4  47899999998888775 7788888887789999998 5664 89999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          350 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       350 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      |||.+.|+..        +......|...+-+|+.
T Consensus       331 GDc~n~PnsK--------TaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  331 GDCMNLPNSK--------TAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             ccccCCCchh--------hHHHHHhcCchhhhhHH
Confidence            9999988743        22233345566666764

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.84  E-value=1e-22  Score=185.60  Aligned_cols=188  Identities=30%  Similarity=0.480  Sum_probs=129.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  141 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (497)
                      |||||||||||++||.+|++.++   +++|+|+.+..+|....++...+..............       .....+.+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~   70 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPAR-------LFKLVDQLKN   70 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHH-------HGHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC---eEEEEeccccccccccccccccccccccccccccccc-------cccccccccc
Confidence            69999999999999999998887   8999998876544333222211110000000000000       0012233467


Q ss_pred             cCcEEEeCCcEEEEecCCCEE----------EECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH
Q 010917          142 KGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  211 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~~v----------~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~  211 (497)
                      .+++++.++++.+++...+.+          ...++.++.||+||+|||+.+.. |.++|.  +.....+...++..+..
T Consensus        71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~  147 (201)
T PF07992_consen   71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLE  147 (201)
T ss_dssp             HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHT
T ss_pred             ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccc
Confidence            899998889999999988742          22345689999999999998764 455553  22223356667888887


Q ss_pred             hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCc
Q 010917          212 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  291 (497)
Q Consensus       212 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~  291 (497)
                      ....+++++|||                                                                    
T Consensus       148 ~~~~~~~v~VvG--------------------------------------------------------------------  159 (201)
T PF07992_consen  148 LLESPKRVAVVG--------------------------------------------------------------------  159 (201)
T ss_dssp             HSSTTSEEEEES--------------------------------------------------------------------
T ss_pred             cccccccccccc--------------------------------------------------------------------
Confidence            777777999999                                                                    


Q ss_pred             EEEEEeCCCcEEEcCEEEEeccCcCCCcch-hhcCCccc-CCCEEecCCCCCCCCcEEEeccccccC
Q 010917          292 VAAVKLEDGSTIDADTIVIGIGAKPTVSPF-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP  356 (497)
Q Consensus       292 v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~-~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~  356 (497)
                                                .+++ +..+++.+ +|++.||+++||+.|||||+|||+..+
T Consensus       160 --------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 --------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             --------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             --------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence                                      3555 78888874 688999999999999999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.76  E-value=3.6e-18  Score=155.80  Aligned_cols=178  Identities=22%  Similarity=0.321  Sum_probs=101.0

Q ss_pred             EEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC----CCCC-CccccCCCCCCCCCCCCCc------------
Q 010917           64 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YE----RPAL-TKGYLFPLDKKPARLPGFH------------  124 (497)
Q Consensus        64 vIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~----~~~l-~~~~l~~~~~~~~~~~~~~------------  124 (497)
                      +|||||||||++|.+|.++|.+  +++|+|+++...  +.    .+.+ +..........+ ++..+.            
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLP-DFESFSFDDSPEWRWPHD   77 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS---CCCHSCHHHHHHHHHSBS
T ss_pred             CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCC-cccccccccCCCCCCCcc
Confidence            7999999999999999999982  399999986542  11    0111 000000000000 000000            


Q ss_pred             cccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCC--CCCcCCCCCC-CCCCcEEE
Q 010917          125 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHY  199 (497)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~--~~~~~~~~~g-~~~~gv~~  199 (497)
                      .....+..+++..+.++++++++++++|+++..+.  ..|++++++.+.+|+||+|||.  .|. .|.+++ ... ...+
T Consensus        78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h  155 (203)
T PF13738_consen   78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIH  155 (203)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEE
T ss_pred             cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEe
Confidence            01111122344555677899999999999998765  4788888888999999999996  454 454555 222 2222


Q ss_pred             ecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          200 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      ..++.+..     ..++++|+|||+|.+|+++|..|++.|.+|+++.|++..
T Consensus       156 ~~~~~~~~-----~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~  202 (203)
T PF13738_consen  156 SADWRDPE-----DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW  202 (203)
T ss_dssp             GGG-STTG-----GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred             hhhcCChh-----hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence            22221111     246799999999999999999999999999999998753

...

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.72  E-value=2e-16  Score=157.19  Aligned_cols=289  Identities=15%  Similarity=0.204  Sum_probs=158.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           58 NENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~-~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      ...++|+||||||||++||.+|. +.|+   +|+|+|+.+.+.    .+.. +...+...  .+   ..     ....+.
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pg----GLvR-~GVaPdh~--~~---k~-----v~~~f~   98 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPY----GLIR-YGVAPDHI--HV---KN-----TYKTFD   98 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCc----cEEE-EeCCCCCc--cH---HH-----HHHHHH
Confidence            45679999999999999999865 5676   899999997642    1111 11111110  00   00     011122


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCC--------CC-CCC----CCcEEEecCH
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--------KI-GGY----LPGVHYIRDV  203 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~--------~~-g~~----~~gv~~~~~~  203 (497)
                      ..+...++++..+.++-      ..++.++-. -.||+||+|||+.+..+|.        +. |.+    ++|++..+++
T Consensus        99 ~~~~~~~v~f~gnv~VG------~Dvt~eeL~-~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~df  171 (506)
T PTZ00188         99 PVFLSPNYRFFGNVHVG------VDLKMEELR-NHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDL  171 (506)
T ss_pred             HHHhhCCeEEEeeeEec------CccCHHHHH-hcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheE
Confidence            23444677776443321      112221112 3799999999998654331        00 332    4566544332


Q ss_pred             -----HHHH-----HHHHh---hccCCeEEEEcCCHHHHHHHHHHH--------------------hCCC-cEEEEecCC
Q 010917          204 -----ADAD-----ALISS---LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPEN  249 (497)
Q Consensus       204 -----~~~~-----~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-~Vtlv~~~~  249 (497)
                           .+.+     .....   +...++++|||+|++++++|..|.                    +.+. +|+++.|+.
T Consensus       172 V~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRG  251 (506)
T PTZ00188        172 IYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRG  251 (506)
T ss_pred             EEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecC
Confidence                 1111     11111   124578999999999999999753                    2233 588887772


Q ss_pred             cchhhc-----------------cCH-H-----------------------HHHHHHHHHH----------HCCcEEEcC
Q 010917          250 HLLQRL-----------------FTP-S-----------------------LAQRYEQLYQ----------QNGVKFVKG  278 (497)
Q Consensus       250 ~~~~~~-----------------~~~-~-----------------------~~~~~~~~l~----------~~GV~i~~~  278 (497)
                      ..-..+                 +++ +                       ..+.+.+..+          .+-+.+++.
T Consensus       252 p~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~  331 (506)
T PTZ00188        252 FWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFY  331 (506)
T ss_pred             HHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEcc
Confidence            110000                 000 0                       1112222221          134677888


Q ss_pred             CeEEEEEeCCCCcEEEEEeC-----------CC--cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCC--CC
Q 010917          279 ASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT--RM  343 (497)
Q Consensus       279 ~~v~~i~~~~~~~v~~v~~~-----------~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t--~~  343 (497)
                      .++.+|.. .++++..+.+.           .|  ++++||+|+-++|++...  +..  +..++ .+.. ...+.  ..
T Consensus       332 ~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~g--~pFd~-~~~n-~~grv~~~~  404 (506)
T PTZ00188        332 FEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FAE--NLYNQ-SVQM-FKEDIGQHK  404 (506)
T ss_pred             CCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CCC--CCccc-cCCC-CCCcccCCC
Confidence            88888874 24677777665           23  369999999999998642  222  22221 1211 11222  36


Q ss_pred             CcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 010917          344 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  383 (497)
Q Consensus       344 ~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i  383 (497)
                      |++|++|=+-..|....|.     +..+|...+..+...+
T Consensus       405 ~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~  439 (506)
T PTZ00188        405 FAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL  439 (506)
T ss_pred             CCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence            9999999999877765443     2334555555444443

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.70  E-value=2.7e-16  Score=153.26  Aligned_cols=248  Identities=21%  Similarity=0.302  Sum_probs=131.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc------ccCCCC-----CCCCCCCCCccccC-
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YLFPLD-----KKPARLPGFHTCVG-  128 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~------~l~~~~-----~~~~~~~~~~~~~~-  128 (497)
                      +|+++||.||++|+.|..|.+.+  ..++..+|+.+.+.|+...+..+      ++.+.-     ..+..+..+....+ 
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r   80 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR   80 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence            69999999999999999999987  34899999998877764333222      111100     01111100000000 


Q ss_pred             ------CCCCCCC-------HhHHH-HcCcEEEeCCcEEEEecCC------CEEEEC----CCcEEEeccEEeccCCCCC
Q 010917          129 ------SGGERQT-------PEWYK-EKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       129 ------~~~~~~~-------~~~~~-~~~v~~~~~~~v~~i~~~~------~~v~~~----~g~~i~~d~lvlAtG~~~~  184 (497)
                            .....-.       ..|+. +..-.+..+.+|+.|++..      .+|.+.    +++.+.++.||+|||..|.
T Consensus        81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~  160 (341)
T PF13434_consen   81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR  160 (341)
T ss_dssp             HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE-
T ss_pred             hhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC
Confidence                  0000001       11222 2344477889999998754      356662    3468999999999998876


Q ss_pred             cCCCCCCC-C-CCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchh-------
Q 010917          185 RFPEKIGG-Y-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ-------  253 (497)
Q Consensus       185 ~~~~~~g~-~-~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-------  253 (497)
                       +|..... . .+.+.+..++....   +.....++|+|||||.+|.|++..|.+.+.  +|+++.|++.+.+       
T Consensus       161 -iP~~~~~~~~~~~v~Hss~~~~~~---~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~  236 (341)
T PF13434_consen  161 -IPEWFQDLPGSPRVFHSSEYLSRI---DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFV  236 (341)
T ss_dssp             ---GGGGGGTT-TTEEEGGGHHHHH---T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCH
T ss_pred             -CCcchhhcCCCCCEEEehHhhhcc---ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccch
Confidence             4533221 1 25566654333221   114578999999999999999999998875  7999999865432       


Q ss_pred             -hccCHH-------------------------------HHHHHHHH-----H-HHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917          254 -RLFTPS-------------------------------LAQRYEQL-----Y-QQNGVKFVKGASIKNLEAGSDGRVAAV  295 (497)
Q Consensus       254 -~~~~~~-------------------------------~~~~~~~~-----l-~~~GV~i~~~~~v~~i~~~~~~~v~~v  295 (497)
                       ..++|+                               +.+.+.+.     + .+..++++.++.|++++..+++.+ .+
T Consensus       237 ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l  315 (341)
T PF13434_consen  237 NEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RL  315 (341)
T ss_dssp             HGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EE
T ss_pred             hhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EE
Confidence             122332                               22111111     1 234588999999999988765443 34


Q ss_pred             EeCC---C--cEEEcCEEEEeccCc
Q 010917          296 KLED---G--STIDADTIVIGIGAK  315 (497)
Q Consensus       296 ~~~~---g--~~i~~D~vv~a~G~~  315 (497)
                      .+.+   +  +++++|.||+|||++
T Consensus       316 ~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  316 TLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             EEEETTT--EEEEEESEEEE---EE
T ss_pred             EEEECCCCCeEEEecCEEEEcCCcc
Confidence            4443   2  478999999999985

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.69  E-value=3.9e-16  Score=145.65  Aligned_cols=156  Identities=20%  Similarity=0.269  Sum_probs=99.7

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      ....++|.|||+||||+.+|..|.++ ++...|+++|+.+.+ |   .|..-.+.|.++.....           ...+.
T Consensus        17 qs~~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~PvP-F---GLvRyGVAPDHpEvKnv-----------intFt   80 (468)
T KOG1800|consen   17 QSSTPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPVP-F---GLVRYGVAPDHPEVKNV-----------INTFT   80 (468)
T ss_pred             ccCCceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCcc-c---ceeeeccCCCCcchhhH-----------HHHHH
Confidence            34456999999999999999999997 346799999999864 2   12211122322222111           12344


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH-------HHH
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-------DAL  209 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~-------~~~  209 (497)
                      +.+++....+..+..|      ...+.+..- +-.||.+|||+|+...+-..+||.++.+|...+.+-..       ..+
T Consensus        81 ~~aE~~rfsf~gNv~v------G~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l  153 (468)
T KOG1800|consen   81 KTAEHERFSFFGNVKV------GRDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL  153 (468)
T ss_pred             HHhhccceEEEeccee------cccccHHHH-hhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccccc
Confidence            4455556666655444      111111111 24799999999998665567889888998876543221       111


Q ss_pred             HHhhccCCeEEEEcCCHHHHHHHHHHH
Q 010917          210 ISSLEKAKKVVVVGGGYIGMEVAAAAV  236 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~  236 (497)
                      .-.+ .+.+|+|||.|..++++|..|.
T Consensus       154 e~dl-s~~~vvIvG~GNVAlDvARiLl  179 (468)
T KOG1800|consen  154 EPDL-SGRKVVIVGNGNVALDVARILL  179 (468)
T ss_pred             Cccc-ccceEEEEccCchhhhhhhhhh
Confidence            1112 3689999999999999999874

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.69  E-value=3.3e-15  Score=143.51  Aligned_cols=179  Identities=23%  Similarity=0.395  Sum_probs=106.5

Q ss_pred             EEEeccEEeccCCCCCcCCCCC--C-CCCCcEEEecCHHHHHHHHHhh-------------ccCCeEEEE---cCCH---
Q 010917          169 LLKYGSLIVATGCTASRFPEKI--G-GYLPGVHYIRDVADADALISSL-------------EKAKKVVVV---GGGY---  226 (497)
Q Consensus       169 ~i~~d~lvlAtG~~~~~~~~~~--g-~~~~gv~~~~~~~~~~~~~~~~-------------~~~~~vvVv---G~G~---  226 (497)
                      ++....+|+|||-.+.......  | ...++|.+   -.+.+++....             ..+|+|+.|   |+-.   
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT---~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~  374 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVIT---NLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV  374 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhh---HHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence            5678899999998765322111  1 01222222   12333333211             245777765   5432   


Q ss_pred             -----------HHHHHHHHHHhC--CCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          227 -----------IGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       227 -----------~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                                 .++--|....++  ..+|+++...-+    .++...-+++.+.-++.||+++.+ ++.+|...+++.+ 
T Consensus       375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR----afG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l-  448 (622)
T COG1148         375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR----AFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL-  448 (622)
T ss_pred             CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee----ccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee-
Confidence                       122233333333  246787765543    345555666766666889999987 4777776666652 


Q ss_pred             EEEeCC---C--cEEEcCEEEEeccCcCCCc---chhhcCCccc-CCCEEec-CCC---CCCCCcEEEeccccccC
Q 010917          294 AVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD-GQF---RTRMPGIFAIGDVAAFP  356 (497)
Q Consensus       294 ~v~~~~---g--~~i~~D~vv~a~G~~p~~~---~~~~~gl~~~-~g~i~vd-~~~---~t~~~~iya~GD~~~~~  356 (497)
                      .|..+|   |  .++++|+||+++|..|...   +.+-+||..+ +|+++.. +.+   +|+.++||.+|-|.++.
T Consensus       449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPk  524 (622)
T COG1148         449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPK  524 (622)
T ss_pred             EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCc
Confidence            344333   3  4799999999999998643   3566788765 5676654 334   36889999999776643

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.68  E-value=5.9e-16  Score=156.49  Aligned_cols=184  Identities=18%  Similarity=0.241  Sum_probs=114.6

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCC--CCCCcccc-CCCCCC--CCCCCCCc
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YER--PALTKGYL-FPLDKK--PARLPGFH  124 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~--~~l~~~~l-~~~~~~--~~~~~~~~  124 (497)
                      ..+..+|+|||||++||++|++|++.|.+  +++++||+....       |..  ...++.++ ++....  ...++.+.
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~   82 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA   82 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence            45678999999999999999999999983  399999996432       110  11111111 111111  11121111


Q ss_pred             cccCCCCCCCCHhHHHHcCcE--EEeCCcEEEEecCCC----EEEECCCcE--EEeccEEeccCCC--CCcCCCCCCCCC
Q 010917          125 TCVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNSGKL--LKYGSLIVATGCT--ASRFPEKIGGYL  194 (497)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~g~~--i~~d~lvlAtG~~--~~~~~~~~g~~~  194 (497)
                           ....+..++++++++.  +..++.|..++.+..    +|+++++..  +.+|.||+|||..  |. .|.++|.+.
T Consensus        83 -----~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~~  156 (443)
T COG2072          83 -----EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLDE  156 (443)
T ss_pred             -----cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCccC
Confidence                 1123445566666654  444555655655442    677877765  4599999999963  32 344444332


Q ss_pred             CcEEEecCHHHHHHHHH-hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          195 PGVHYIRDVADADALIS-SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       195 ~gv~~~~~~~~~~~~~~-~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      .....++    +....+ ....+|+|+|||+|.+|++++..|.+.|.+||++.|++...
T Consensus       157 f~g~~~H----S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         157 FKGRILH----SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             CCceEEc----hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence            2211221    222111 23479999999999999999999999999999999986543

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.68  E-value=1.4e-14  Score=137.38  Aligned_cols=293  Identities=17%  Similarity=0.211  Sum_probs=178.4

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcccc----------CCCC-C----------
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------FPLD-K----------  115 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l----------~~~~-~----------  115 (497)
                      ++...|++.||-||+-|+.|..|.+.+.  .+...+|+.+.+.|+..++..+..          ...+ .          
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~   79 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH   79 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence            4556899999999999999999998763  479999999988777443332211          0000 0          


Q ss_pred             CCCCCCCCccccCCCC----CCCCHhHHHHcCcEEEeCCcEE---EEecCCC---EEEECCCcEEEeccEEeccCCCCCc
Q 010917          116 KPARLPGFHTCVGSGG----ERQTPEWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       116 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~v~---~i~~~~~---~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ...++-.|........    ...+-.|....--.++++++|+   .++.+..   .+.+.++..+.++.|||++|..|..
T Consensus        80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I  159 (436)
T COG3486          80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI  159 (436)
T ss_pred             HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence            0011111111110000    0112234444445678888998   4444433   2566777789999999999999874


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEecCCcchhh-------
Q 010917          186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQR-------  254 (497)
Q Consensus       186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~-------  254 (497)
                      ++......-+.+++...   ....+..+...++|.|||+|.+|.|+-..|...    ..++.++.|+..+.+.       
T Consensus       160 P~~f~~l~~~~vfHss~---~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~  236 (436)
T COG3486         160 PPCFRSLIGERVFHSSE---YLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL  236 (436)
T ss_pred             ChHHhCcCccceeehHH---HHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence            33222211233444321   111122233445599999999999999998654    3357889998665542       


Q ss_pred             -ccCHHHHH------------------------------HHHHHH-------HHCCcEEEcCCeEEEEEeCCCCcEEEEE
Q 010917          255 -LFTPSLAQ------------------------------RYEQLY-------QQNGVKFVKGASIKNLEAGSDGRVAAVK  296 (497)
Q Consensus       255 -~~~~~~~~------------------------------~~~~~l-------~~~GV~i~~~~~v~~i~~~~~~~v~~v~  296 (497)
                       .+.|+..+                              .+-+.|       .+..|.++.++.+..++..++|++ .+.
T Consensus       237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~  315 (436)
T COG3486         237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLT  315 (436)
T ss_pred             hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEE
Confidence             11222111                              111111       245789999999999998777753 333


Q ss_pred             e-----CCCcEEEcCEEEEeccCcCCCc-chhhcC--Cc-ccCCCEEecCCCCCCC-----CcEEEecccccc
Q 010917          297 L-----EDGSTIDADTIVIGIGAKPTVS-PFERVG--LN-SSVGGIQVDGQFRTRM-----PGIFAIGDVAAF  355 (497)
Q Consensus       297 ~-----~~g~~i~~D~vv~a~G~~p~~~-~~~~~g--l~-~~~g~i~vd~~~~t~~-----~~iya~GD~~~~  355 (497)
                      +     ...++++.|.||+|||++...+ +++.+.  +. +++|...|+..++...     -.||+.|-+...
T Consensus       316 ~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht  388 (436)
T COG3486         316 LRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT  388 (436)
T ss_pred             EeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence            3     2335899999999999985544 666554  22 3567899998776521     259999977653

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=5.7e-16  Score=154.24  Aligned_cols=243  Identities=19%  Similarity=0.259  Sum_probs=144.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC----------------CCCcccc-CCCCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP----------------ALTKGYL-FPLDKKPA  118 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~----------------~l~~~~l-~~~~~~~~  118 (497)
                      +..++|+|||||||||++|+.|.+.|+   +++++|+.+...  |..+                .+++.+. ++..+.+.
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~   80 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE   80 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence            456899999999999999999999998   899999998543  1111                1122111 11122222


Q ss_pred             CCCCCccccCCCCCCCCHhHHHHcCc--EEEeCCcEEEEecCC---CEEEECCC----cEEEeccEEeccCCCC-CcCCC
Q 010917          119 RLPGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFPE  188 (497)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~---~~v~~~~g----~~i~~d~lvlAtG~~~-~~~~~  188 (497)
                      +.+.+. ....+..+++..+.++.++  .+.++++|..++...   ..|.+.++    +..-||.|++|||-.. ..+|.
T Consensus        81 ~~~~~~-p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~  159 (448)
T KOG1399|consen   81 RDPRYF-PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ  159 (448)
T ss_pred             cCcccC-CCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence            211110 0000112344455556665  477788888887765   25555443    3678999999999873 12455


Q ss_pred             CCCC---CCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917          189 KIGG---YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  265 (497)
Q Consensus       189 ~~g~---~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~  265 (497)
                      +++.   ..+|    ..++..+.-......+|+|+|||+|.+|+|++..++....+|++..+ .-.... ..+       
T Consensus       160 ~~g~~~~~f~G----~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~-------  226 (448)
T KOG1399|consen  160 IPGPGIESFKG----KIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPP-------  226 (448)
T ss_pred             CCCCchhhcCC----cceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-ccc-------
Confidence            4442   1222    11111222122234689999999999999999999999888887754 100000 000       


Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcC
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                      . .-..++..+..  |..+++  ++   .+.+.++....+|.+|+|+|+.-...+++..+
T Consensus       227 ~-~~~~~~~~~~~--i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  227 E-ILGENLWQVPS--IKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             c-eeecceEEccc--cccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            0 01112333222  555542  32   35566777889999999999998777776553

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.64  E-value=2.8e-14  Score=142.24  Aligned_cols=158  Identities=15%  Similarity=0.137  Sum_probs=113.4

Q ss_pred             EEEcCCHHHHHHH-HHHH----hCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          220 VVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       220 vVvG~G~~g~e~A-~~l~----~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      +|++.+.+|+|.+ ..+.    ++|.+|+++...+..++.   .++.+.+.+.+++.|++++++++|.+++.. ++.+..
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~  294 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTA  294 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEE
Confidence            6789999999999 6664    579999999988887764   378888999999999999999999999865 455555


Q ss_pred             EEeCCCc--EEEcCEEEEeccCcCCCcch-----------------------------------hhcCCcccCCCEEecC
Q 010917          295 VKLEDGS--TIDADTIVIGIGAKPTVSPF-----------------------------------ERVGLNSSVGGIQVDG  337 (497)
Q Consensus       295 v~~~~g~--~i~~D~vv~a~G~~p~~~~~-----------------------------------~~~gl~~~~g~i~vd~  337 (497)
                      +...+++  .+++|.||+|+|..++..+.                                   ...|+.+++....+|.
T Consensus       295 v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~  374 (422)
T PRK05329        295 VWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDS  374 (422)
T ss_pred             EEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccC
Confidence            5555553  58999999999987654431                                   2233333333333444


Q ss_pred             CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          338 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       338 ~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ..++..+|+||+|++.+.+++..-..    --..|...|..|+++|..
T Consensus       375 ~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        375 QGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAE  418 (422)
T ss_pred             CCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHH
Confidence            55556899999999999887542111    112366677777777763

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.53  E-value=1.7e-12  Score=126.94  Aligned_cols=313  Identities=20%  Similarity=0.295  Sum_probs=169.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCCcccc-CCCCCCCCCCCC----CccccCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYL-FPLDKKPARLPG----FHTCVGSG  130 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~l-~~~~~~~~~~~~----~~~~~~~~  130 (497)
                      +++|+|||||++|+..|.+|.+.--....|+|+|+.+.+    +|+... +...+ .+........|.    |..|....
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~-p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~   79 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE-PEHLLNVPAARMSAFAPDIPQDFVRWLQKQ   79 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCC-chhhhccccccccccCCCCchHHHHHHHhc
Confidence            379999999999999999999976444559999998754    344211 10011 000000000010    11111000


Q ss_pred             -------------CCCCC-------------HhHHHHcC---cEEEeCCcEEEEecCC----CEEEECCCcEEEeccEEe
Q 010917          131 -------------GERQT-------------PEWYKEKG---IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIV  177 (497)
Q Consensus       131 -------------~~~~~-------------~~~~~~~~---v~~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lvl  177 (497)
                                   ...+.             ..++++..   +.++. ++++++....    ..+...+|....+|-+|+
T Consensus        80 ~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vl  158 (474)
T COG4529          80 LQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVL  158 (474)
T ss_pred             ccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEE
Confidence                         00011             11112222   44443 4555555541    356777888889999999


Q ss_pred             ccCCCCCcCCCCCCCCCCcE-EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchhh
Q 010917          178 ATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR  254 (497)
Q Consensus       178 AtG~~~~~~~~~~g~~~~gv-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~  254 (497)
                      |||..+...+. ...++++- .++.+...+.. +..+....+|+|+|+|.+.++....|.++|.  .+|++.|+. +.++
T Consensus       159 atgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~-ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~  235 (474)
T COG4529         159 ATGHSAPPADP-AARDLKGSPRLIADPYPANA-LDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPR  235 (474)
T ss_pred             eccCCCCCcch-hhhccCCCcceeccccCCcc-cccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-cccC
Confidence            99976543222 11222211 12222222322 2234556779999999999999999999886  588888873 1110


Q ss_pred             ------------cc------------------------------------------------------------------
Q 010917          255 ------------LF------------------------------------------------------------------  256 (497)
Q Consensus       255 ------------~~------------------------------------------------------------------  256 (497)
                                  ..                                                                  
T Consensus       236 ~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr  315 (474)
T COG4529         236 PHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHR  315 (474)
T ss_pred             CCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHH
Confidence                        00                                                                  


Q ss_pred             ---CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEeccCcCCCc-----chhh--
Q 010917          257 ---TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVS-----PFER--  323 (497)
Q Consensus       257 ---~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~~D~vv~a~G~~p~~~-----~~~~--  323 (497)
                         .+.+...+.+.+.+.-++++-+ ++..|...+.+....+....   .+++++|.||-|+|..+...     ++..  
T Consensus       316 ~R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~  394 (474)
T COG4529         316 FRLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLG  394 (474)
T ss_pred             hhhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHH
Confidence               0111111111112222344433 45555544444322222222   25789999999999876543     2332  


Q ss_pred             -cCCcc---cCCCEEecCCCCC------CCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          324 -VGLNS---SVGGIQVDGQFRT------RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       324 -~gl~~---~~g~i~vd~~~~t------~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                       -|+..   ...|+.|+++.+.      ..+++|++|..+......      +..+..-..|+..+|..++
T Consensus       395 ~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~e------i~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         395 ENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWE------IDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             hCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhh------hccChHHHHHHHHHHHHHh
Confidence             34432   2467888887664      468899999888754211      2233344566666776666

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.50  E-value=3e-13  Score=103.06  Aligned_cols=80  Identities=39%  Similarity=0.653  Sum_probs=74.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  297 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~  297 (497)
                      +++|||+|++|+|+|..|++.|.+||++++.+.++ +.+++++...+.+.++++||++++++.+++++.++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            68999999999999999999999999999999999 4689999999999999999999999999999987777 66 888


Q ss_pred             CCC
Q 010917          298 EDG  300 (497)
Q Consensus       298 ~~g  300 (497)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK09897 hypothetical protein; Provisional

Probab=99.36  E-value=2.7e-10  Score=117.10  Aligned_cols=170  Identities=16%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCCCccccCCC--CCCCCCCCCCcccc------
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPL--DKKPARLPGFHTCV------  127 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~l~~~~l~~~--~~~~~~~~~~~~~~------  127 (497)
                      +++|+||||||+|+++|.+|.+.+. ..+|+|||+.....    |....-+..++...  ...+...+.+..|.      
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~   79 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS   79 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence            3689999999999999999998764 56899999975432    33211111001000  00000000011110      


Q ss_pred             -------------------CCCCCCCCHhH-------HHHcC--cEEEeCCcEEEEecCCC--EEEECC-CcEEEeccEE
Q 010917          128 -------------------GSGGERQTPEW-------YKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI  176 (497)
Q Consensus       128 -------------------~~~~~~~~~~~-------~~~~~--v~~~~~~~v~~i~~~~~--~v~~~~-g~~i~~d~lv  176 (497)
                                         ...+-.++...       +...|  +.++.+++|+.++....  .+++++ +..+.+|+||
T Consensus        80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence                               00000111111       12334  67777889999977654  455544 4678999999


Q ss_pred             eccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC
Q 010917          177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW  238 (497)
Q Consensus       177 lAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~  238 (497)
                      +|||..+...+  .+  .+  .++.+..+.. ..... .+.+|+|+|.|+++++++..|...
T Consensus       160 LAtGh~~p~~~--~~--~~--~yi~~pw~~~-~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        160 IATGHVWPDEE--EA--TR--TYFPSPWSGL-MEAKV-DACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             ECCCCCCCCCC--hh--hc--cccCCCCcch-hhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence            99997532111  11  11  1222222221 11223 368999999999999999999765

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.31  E-value=5.5e-12  Score=120.32  Aligned_cols=121  Identities=26%  Similarity=0.256  Sum_probs=77.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCCc-----cccC--C------------
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK-----GYLF--P------------  112 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~~-----~~l~--~------------  112 (497)
                      +.+||+|||||||||.||..++++|+   +|+|||+.+...       -.|++..+     .|+.  +            
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~   78 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR   78 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence            45899999999999999999999998   899999998321       00111100     0000  0            


Q ss_pred             ------------C-CCCCCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEecc
Q 010917          113 ------------L-DKKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGS  174 (497)
Q Consensus       113 ------------~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~  174 (497)
                                  . -.....-.+...+.   .....+.+...+++.||+++++++|.+++.+.  ..+.+.+|+++.+|.
T Consensus        79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~  158 (408)
T COG2081          79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS  158 (408)
T ss_pred             CCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence                        0 00000000000000   01111223445677899999999999999875  678888998899999


Q ss_pred             EEeccCCC
Q 010917          175 LIVATGCT  182 (497)
Q Consensus       175 lvlAtG~~  182 (497)
                      ||||||..
T Consensus       159 lilAtGG~  166 (408)
T COG2081         159 LILATGGK  166 (408)
T ss_pred             EEEecCCc
Confidence            99999943

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.27  E-value=4.8e-10  Score=110.67  Aligned_cols=126  Identities=20%  Similarity=0.287  Sum_probs=88.2

Q ss_pred             hhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcchhhc------
Q 010917          253 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV------  324 (497)
Q Consensus       253 ~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~~~~~------  324 (497)
                      |...+..+.+.+.+.+++.|++++.+.+|.++... ++++..+.+.++  ..+.+|.+|+|+|.--...++++.      
T Consensus       258 PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Ep  336 (419)
T TIGR03378       258 PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEP  336 (419)
T ss_pred             CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeee
Confidence            34455677888999999999999999999998754 566667776776  479999999999987222333321      


Q ss_pred             --CCcc--------------------cCCCEEecCCCCC-----CCCcEEEeccccccCCccCCcccccccHHHHHHHHH
Q 010917          325 --GLNS--------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  377 (497)
Q Consensus       325 --gl~~--------------------~~g~i~vd~~~~t-----~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  377 (497)
                        ++++                    ..=||.+|+++|.     ..+|+||+|-+.+..++..-..    -...|+..|.
T Consensus       337 if~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gc----G~GVai~Ta~  412 (419)
T TIGR03378       337 IFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGC----GSGVAVSTAL  412 (419)
T ss_pred             ccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCC----CchhHHHHHH
Confidence              1211                    1126889999883     3799999999999877643111    0123667777


Q ss_pred             HHHHHH
Q 010917          378 HCIKAL  383 (497)
Q Consensus       378 ~~a~~i  383 (497)
                      .||+.|
T Consensus       413 ~aa~~i  418 (419)
T TIGR03378       413 HAAEQI  418 (419)
T ss_pred             HHHHhh
Confidence            777766

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.12  E-value=2.7e-10  Score=111.44  Aligned_cols=56  Identities=30%  Similarity=0.453  Sum_probs=43.0

Q ss_pred             CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917          330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  386 (497)
Q Consensus       330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~  386 (497)
                      -|||.||.+.||+.|++||+|.|+.....-.++.+ ..+.-.+...|..+|++|.+.
T Consensus       341 mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLLE~vV~g~~aA~~i~~~  396 (518)
T COG0029         341 MGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGKRAAEDIAGR  396 (518)
T ss_pred             cccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence            48999999999999999999999986543333332 234456788889999999864

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.07  E-value=9.8e-11  Score=116.67  Aligned_cols=120  Identities=28%  Similarity=0.381  Sum_probs=60.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCCc------cccCCCCCCCCCC-------
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK------GYLFPLDKKPARL-------  120 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~~------~~l~~~~~~~~~~-------  120 (497)
                      +||+|||||||||.||..|++.|.   +|+|+|+++...       -.|..++.      .|..........+       
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence            689999999999999999999998   899999997431       00111110      0100000000000       


Q ss_pred             -----------CCCcccc---C-----C----CCCCCCHhHHHHcCcEEEeCCcEEEEecCCC---EEEECCCcEEEecc
Q 010917          121 -----------PGFHTCV---G-----S----GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGS  174 (497)
Q Consensus       121 -----------~~~~~~~---~-----~----~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~  174 (497)
                                 .+.....   +     .    .....+...+++.|++++++++|.++..++.   .|.++++..+.+|+
T Consensus        78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~  157 (409)
T PF03486_consen   78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA  157 (409)
T ss_dssp             -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred             CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence                       0000000   0     0    0001122334677999999999999976543   46776778899999


Q ss_pred             EEeccCCCC
Q 010917          175 LIVATGCTA  183 (497)
Q Consensus       175 lvlAtG~~~  183 (497)
                      ||||||+..
T Consensus       158 vILAtGG~S  166 (409)
T PF03486_consen  158 VILATGGKS  166 (409)
T ss_dssp             EEE----SS
T ss_pred             EEEecCCCC
Confidence            999999864

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.06  E-value=7.7e-10  Score=113.58  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +||+|||||.|||+||..+++.|.   +|+|+||..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            799999999999999999999987   899999974

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=99.04  E-value=3.3e-09  Score=98.05  Aligned_cols=129  Identities=18%  Similarity=0.250  Sum_probs=85.3

Q ss_pred             hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeccCcCCCcchh-------
Q 010917          252 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE-------  322 (497)
Q Consensus       252 ~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vv~a~G~~p~~~~~~-------  322 (497)
                      .|..++-.+.+.+...+++.|..+.++-.|.+.+- .+++++.|.+.+...  +.+|..|+|+|.--...+..       
T Consensus       252 PPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~E  330 (421)
T COG3075         252 PPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYE  330 (421)
T ss_pred             CcchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhc
Confidence            33445566788899999999999999999999875 478888999888765  55999999999643322211       


Q ss_pred             ---hcCCc---c---------------cCCCEEecCCCCCC-----CCcEEEeccccccCCccCCcccccccHHHHHHHH
Q 010917          323 ---RVGLN---S---------------SVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA  376 (497)
Q Consensus       323 ---~~gl~---~---------------~~g~i~vd~~~~t~-----~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g  376 (497)
                         ++.+.   .               ..=||.+|+++|-+     ..|+||||.+.+.+++..-...    -..+...|
T Consensus       331 PIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcG----sGVaivta  406 (421)
T COG3075         331 PIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCG----SGVAIVTA  406 (421)
T ss_pred             chhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCC----cchHHHHH
Confidence               11110   0               11257888888753     5789999999988775421110    01244455


Q ss_pred             HHHHHHHhc
Q 010917          377 QHCIKALLS  385 (497)
Q Consensus       377 ~~~a~~i~~  385 (497)
                      ..+|..|+.
T Consensus       407 ~~aa~qi~~  415 (421)
T COG3075         407 LHAAEQIAE  415 (421)
T ss_pred             HHHHHHHHH
Confidence            555555553

>TIGR00551 nadB L-aspartate oxidase

Probab=98.99  E-value=6.5e-09  Score=107.47  Aligned_cols=56  Identities=30%  Similarity=0.415  Sum_probs=38.2

Q ss_pred             cCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          329 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       329 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      .-|||.+|.+.+|++||+||+|+|+.....-.++.. -.+...|...|+.+++++..
T Consensus       332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       332 TCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             ecCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHh
Confidence            358999999999999999999999742111011111 22455677788888887764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.98  E-value=7.4e-10  Score=116.65  Aligned_cols=107  Identities=20%  Similarity=0.270  Sum_probs=79.3

Q ss_pred             HHhhccCCeEEEEcCCH--HHHHHHHHHHhCCCcEEEEecCCcchhhc-------------cCHHHHHHHHHHHHHCCcE
Q 010917          210 ISSLEKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~--~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-------------~~~~~~~~~~~~l~~~GV~  274 (497)
                      .+.....+++.|+|+++  ++.+++..+...+.+++++.+.+.++...             ....+...+.+.+++.|++
T Consensus       151 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~  230 (574)
T PRK12842        151 ARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIP  230 (574)
T ss_pred             HhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCE
Confidence            33344668889999998  89999999999998888776555544321             1234666677888899999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCC--Cc-EEEcC-EEEEeccCcCC
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT  317 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~~~--g~-~i~~D-~vv~a~G~~p~  317 (497)
                      ++.++.++++... ++++.+|...+  ++ .+.++ .||+|+|..++
T Consensus       231 i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        231 ILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             EEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            9999999998854 57777776643  33 47786 79999997664

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.97  E-value=1.1e-08  Score=101.04  Aligned_cols=217  Identities=20%  Similarity=0.279  Sum_probs=119.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCC-CCCCCCCCCccccCCCCCCCCHh
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-KKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      +++||+|||||+-|+++|+.|+++.. +.+|+|+||++....+......+...... ..+..+...   ..........+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p-~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~---l~~~g~~~~~~   77 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEP-DLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAK---LCVAGNINEFA   77 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCC-CceEEEEEccCccccccccCcccceeccccCCCcchhhH---HHHHHHHHHHH
Confidence            46899999999999999999999983 45999999998776554432222221110 001011000   00000001123


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCc-CCCCC-CCCCCcEEEecCHHHHHHHHHhhcc
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-FPEKI-GGYLPGVHYIRDVADADALISSLEK  215 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~-~~~~~-g~~~~gv~~~~~~~~~~~~~~~~~~  215 (497)
                      +++++++.+                       +...++++|+|-.... +.... .....+++.. ...+.+.+.+..+.
T Consensus        78 ~~kq~~~~f-----------------------~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~-~~ld~~~i~~~eP~  133 (429)
T COG0579          78 ICKQLGIPF-----------------------INCGKLSVATGEEEVERLEKLYERGKANGVFDL-EILDKEEIKELEPL  133 (429)
T ss_pred             HHHHhCCcc-----------------------cccCeEEEEEChHHHHHHHHHHHHHhhCCCcce-eecCHHHHHhhCcc
Confidence            334444222                       2236888998864321 10000 0001122211 11234444433221


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  295 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v  295 (497)
                      -..- ++|+                   +..+...+.   -..++...+.+.++++|++++++++|+.|+..++| +..+
T Consensus       134 l~~~-~~aa-------------------l~~p~~giV---~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~  189 (429)
T COG0579         134 LNEG-AVAA-------------------LLVPSGGIV---DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVL  189 (429)
T ss_pred             cccc-ceee-------------------EEcCCCceE---cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEE
Confidence            0000 1110                   111111111   12245667777788899999999999999987665 5567


Q ss_pred             EeCCCcE-EEcCEEEEeccCcCCCcchhhcCCcc
Q 010917          296 KLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS  328 (497)
Q Consensus       296 ~~~~g~~-i~~D~vv~a~G~~p~~~~~~~~gl~~  328 (497)
                      .+.+|++ ++|+.||.|.|.... .+++.+|+..
T Consensus       190 ~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~  222 (429)
T COG0579         190 NTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE  222 (429)
T ss_pred             EecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence            8888876 999999999998765 5667666654

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=98.95  E-value=6.5e-09  Score=79.57  Aligned_cols=76  Identities=24%  Similarity=0.408  Sum_probs=62.3

Q ss_pred             ceeeeccccCCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhCCCCCChh
Q 010917          396 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA  472 (497)
Q Consensus       396 ~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (497)
                      ||||+||+..       +|++|....  +++.+|+.+ .++..+|+++|+++|++. +|.+.++..++++++.+..++++
T Consensus         1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~   72 (85)
T PF14759_consen    1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA   72 (85)
T ss_dssp             EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred             CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence            7999999875       999998653  678888876 789999999999999995 89999999999999999999999


Q ss_pred             hhcCCCc
Q 010917          473 KLQQASS  479 (497)
Q Consensus       473 ~~~~~~~  479 (497)
                      .+.++..
T Consensus        73 ~l~d~~~   79 (85)
T PF14759_consen   73 RLADPSV   79 (85)
T ss_dssp             HHHSTTS
T ss_pred             HhcCCCC
Confidence            8877654

...

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.93  E-value=5.5e-08  Score=101.67  Aligned_cols=37  Identities=32%  Similarity=0.405  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ....||||||+|.|||+||..+++.|.   +|+|+||...
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~   50 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL   50 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence            346899999999999999999999887   8999999764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.90  E-value=2e-07  Score=97.91  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||||.||++||..+++.|.   +|+|+||.+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~---~V~lveK~~   38 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGF---KVAVISKVF   38 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCC---cEEEEEccC
Confidence            45799999999999999999999887   899999975

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.87  E-value=3.3e-08  Score=104.11  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=31.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..||||||||.|||+||..+++.|. ..+|+|+||..
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~   39 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVY   39 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccC
Confidence            4699999999999999999998763 34899999975

>PRK06847 hypothetical protein; Provisional

Probab=98.86  E-value=9.4e-09  Score=103.03  Aligned_cols=123  Identities=20%  Similarity=0.217  Sum_probs=74.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCcc------------ccC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKG------------YLF  111 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~------------~l~  111 (497)
                      ++++|+||||||||+++|..|++.|+   +|+|+|+.+...-...               .+...            +..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD   79 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence            45799999999999999999999998   8999999864211000               00000            000


Q ss_pred             CCCCCCCCC----------CCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEecc
Q 010917          112 PLDKKPARL----------PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT  179 (497)
Q Consensus       112 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAt  179 (497)
                      ........+          +.........+...+.+.+.+.|++++.+++|+.++....  .+.+.+|+++.+|.||.|+
T Consensus        80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad  159 (375)
T PRK06847         80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD  159 (375)
T ss_pred             CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence            000000000          0000000000011122334456899999999999876544  5667788889999999999


Q ss_pred             CCCCC
Q 010917          180 GCTAS  184 (497)
Q Consensus       180 G~~~~  184 (497)
                      |....
T Consensus       160 G~~s~  164 (375)
T PRK06847        160 GLYSK  164 (375)
T ss_pred             CCCcc
Confidence            98653

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.86  E-value=1.8e-08  Score=105.20  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=30.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ....||||||+|.||++||.++++ |.   +|+||||.+.
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~---~V~lieK~~~   42 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPS-HL---RVGLITKDTL   42 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-CC---CEEEEEccCC
Confidence            345799999999999999999964 65   8999999863

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.85  E-value=1.3e-07  Score=98.15  Aligned_cols=55  Identities=24%  Similarity=0.401  Sum_probs=38.2

Q ss_pred             CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      -|||.+|.+.+|+.|++||+|+|+.....-.++.. -.+...+...|+.|++++..
T Consensus       332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~  386 (510)
T PRK08071        332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT  386 (510)
T ss_pred             cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999752111001111 22455677888888888753

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.84  E-value=4e-07  Score=95.16  Aligned_cols=56  Identities=29%  Similarity=0.394  Sum_probs=38.2

Q ss_pred             cCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          329 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       329 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      .-|||.+|.+.+|+.|++||+|+|+.....-.++.. -.+...|...|+.|++++..
T Consensus       352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~  407 (536)
T PRK09077        352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS  407 (536)
T ss_pred             ecCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999999742111111111 22455677778888877754

>PLN02815 L-aspartate oxidase

Probab=98.81  E-value=3.4e-07  Score=96.13  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..||||||+|.|||+||..+++.|    +|+|+||.+.
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G----~VvlleK~~~   62 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG----TVAIITKDEP   62 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC----CEEEEECCCC
Confidence            579999999999999999999976    5999999763

>PRK08275 putative oxidoreductase; Provisional

Probab=98.81  E-value=2.2e-08  Score=105.10  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...||||||||.||++||..+++.|. ..+|+|+||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence            34799999999999999999998752 348999999864

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.80  E-value=4.1e-08  Score=97.42  Aligned_cols=67  Identities=30%  Similarity=0.489  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl  326 (497)
                      +..+.+.+.+.+++.|++++.+++|+++... ++.+.+|.+.+|+ +.+|.||+|+|.... .++..++.
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~  212 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL  212 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence            4577888888899999999999999999865 5667679999998 999999999998654 45555554

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.79  E-value=5.2e-08  Score=102.79  Aligned_cols=39  Identities=31%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...||||||||.|||+||..+++.|....+|+|+||...
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~   42 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP   42 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence            357999999999999999999998711138999999763

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.78  E-value=3.8e-08  Score=103.39  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=31.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..||+|||||.|||+||..+++.+. ..+|+|+||..
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~-g~~V~lveK~~   38 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANP-HLDVALISKVY   38 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccC
Confidence            4699999999999999999998753 34899999975

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.78  E-value=4.2e-08  Score=108.50  Aligned_cols=36  Identities=31%  Similarity=0.510  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..+||||||||.|||+||.++++.|.   +|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence            35799999999999999999999887   8999999763

>PRK10015 oxidoreductase; Provisional

Probab=98.75  E-value=2.8e-08  Score=100.88  Aligned_cols=123  Identities=17%  Similarity=0.228  Sum_probs=71.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCCc---cccCCCC--CCC------------
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK---GYLFPLD--KKP------------  117 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l~~---~~l~~~~--~~~------------  117 (497)
                      ..++||+||||||||++||+.|++.|+   +|+|||+.+.......   .++.   ..+.+..  ..+            
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~   79 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISF   79 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEE
Confidence            346899999999999999999999998   8999999875432110   0000   0000000  000            


Q ss_pred             --------CCCCC----CccccCCCCCC-C----CHhHHHHcCcEEEeCCcEEEEecCCCEE--EECCCcEEEeccEEec
Q 010917          118 --------ARLPG----FHTCVGSGGER-Q----TPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVA  178 (497)
Q Consensus       118 --------~~~~~----~~~~~~~~~~~-~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~g~~i~~d~lvlA  178 (497)
                              .++..    .....+....+ .    +.+..++.|++++.+++|+.+..++..+  ...++.++.+|.+|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A  159 (429)
T PRK10015         80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA  159 (429)
T ss_pred             EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence                    00000    00000000001 1    2223355799999999999887654433  2334567999999999


Q ss_pred             cCCCC
Q 010917          179 TGCTA  183 (497)
Q Consensus       179 tG~~~  183 (497)
                      +|...
T Consensus       160 dG~~s  164 (429)
T PRK10015        160 DGVNS  164 (429)
T ss_pred             cCcch
Confidence            99753

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.75  E-value=2.9e-08  Score=100.88  Aligned_cols=121  Identities=21%  Similarity=0.284  Sum_probs=72.0

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcccc--------CCCC--CCC-CCCC-----
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL--------FPLD--KKP-ARLP-----  121 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l--------~~~~--~~~-~~~~-----  121 (497)
                      ..++||+||||||||++||..|+++|+   +|+|+|+.+......  ...+.+        .+..  ..+ .+..     
T Consensus         3 ~~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~--~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~   77 (428)
T PRK10157          3 EDIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKN--VTGGRLYAHSLEHIIPGFADSAPVERLITHEKL   77 (428)
T ss_pred             cccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCcc--cccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence            346899999999999999999999998   899999986543211  000000        0000  000 0000     


Q ss_pred             ------C---Cccc-------cCCCC--C-----CCCHhHHHHcCcEEEeCCcEEEEecCCCE--EEECCCcEEEeccEE
Q 010917          122 ------G---FHTC-------VGSGG--E-----RQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLI  176 (497)
Q Consensus       122 ------~---~~~~-------~~~~~--~-----~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~g~~i~~d~lv  176 (497)
                            +   +...       ....+  .     ..+.+..++.|++++.+++|+.+..+...  ....++.++.+|.||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI  157 (428)
T PRK10157         78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI  157 (428)
T ss_pred             EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence                  0   0000       00000  0     01122334579999999999988654433  234566789999999


Q ss_pred             eccCCCC
Q 010917          177 VATGCTA  183 (497)
Q Consensus       177 lAtG~~~  183 (497)
                      .|+|...
T Consensus       158 ~A~G~~s  164 (428)
T PRK10157        158 LADGVNS  164 (428)
T ss_pred             EEeCCCH
Confidence            9999753

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.75  E-value=3.1e-08  Score=99.75  Aligned_cols=123  Identities=22%  Similarity=0.265  Sum_probs=74.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---CCcccc---CCCCCC--CCCC-------CCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKGYL---FPLDKK--PARL-------PGF  123 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~---l~~~~l---~~~~~~--~~~~-------~~~  123 (497)
                      +++||+||||||||++||+.|++.|+   +|+|+|+.+...+....   ++...+   .+....  ...+       ++.
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~   78 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGE   78 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCC
Confidence            46899999999999999999999997   89999998765543211   111000   010000  0000       000


Q ss_pred             ----------cccc-CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCE--E-EECCCcEEEeccEEeccCCCCC
Q 010917          124 ----------HTCV-GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--L-ITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       124 ----------~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                                ...+ ...+.+.+.+..++.|.+++.++++..+..++..  + +..++.++.++.+|.|+|....
T Consensus        79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~  153 (396)
T COG0644          79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA  153 (396)
T ss_pred             ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence                      0000 0001111223345679999999999988766532  2 2233357999999999997643

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.74  E-value=5.1e-08  Score=103.11  Aligned_cols=35  Identities=31%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~   97 (497)
                      ..||||||||.|||+||.++++.  |.   +|+||||.+.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~---~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDL---KVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCC---eEEEEECCCc
Confidence            47999999999999999999998  76   8999999864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.74  E-value=1.3e-07  Score=91.68  Aligned_cols=99  Identities=22%  Similarity=0.317  Sum_probs=79.0

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---ch--------hh----ccCHHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGASIK  282 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~~--------~~----~~~~~~~~~~~~~l~~~GV~i~~~~~v~  282 (497)
                      +|+|||+|+.|+++|..|.+.|.+|+++++.+.   +.        +.    ..+.++...+.+.+++.|+++++ .++.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            589999999999999999999999999997641   10        11    12357778888889999999998 7899


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      +++..+ +. ..+.+.+++++.+|.+|+|+|..|+..
T Consensus        81 ~v~~~~-~~-~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDLSD-RP-FKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEecC-Ce-eEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            998643 22 246677888999999999999988643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.73  E-value=5.3e-08  Score=93.99  Aligned_cols=120  Identities=23%  Similarity=0.335  Sum_probs=70.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCCcc---cc----------------CCCCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTKG---YL----------------FPLDKKPAR  119 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--~l~~~---~l----------------~~~~~~~~~  119 (497)
                      +||+||||||||+++|..|++.|.   +|+|+|+.+.......  .+...   .+                .........
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence            589999999999999999999988   8999999875322000  00000   00                000000000


Q ss_pred             CCC----CccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECC-CcEEEeccEEeccCCCC
Q 010917          120 LPG----FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTA  183 (497)
Q Consensus       120 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~-g~~i~~d~lvlAtG~~~  183 (497)
                      .+.    ............+.+.+.+.|++++.+++++.+..+..  .+.+.+ +.++.+|+||+|+|...
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            000    00000001111223344567899999999988765544  344343 45799999999999753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.73  E-value=8.2e-09  Score=108.21  Aligned_cols=108  Identities=19%  Similarity=0.208  Sum_probs=77.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHH-------HHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC
Q 010917          215 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  287 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~-------l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  287 (497)
                      .++.++++|++.++++.+..       +.+++.+|+++...+..+. .++..+...+.+.+++.||++++++.++++..+
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~  237 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE  237 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence            45678899999999998865       5667777777654443332 256677888888899999999999999999864


Q ss_pred             CCCcEEEEEeC-CCc--EEEcC-EEEEec-cCcCCCcchhhc
Q 010917          288 SDGRVAAVKLE-DGS--TIDAD-TIVIGI-GAKPTVSPFERV  324 (497)
Q Consensus       288 ~~~~v~~v~~~-~g~--~i~~D-~vv~a~-G~~p~~~~~~~~  324 (497)
                       ++++.+|... +++  .+.++ .||+|+ |+.+|.++++..
T Consensus       238 -~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~  278 (557)
T PRK07843        238 -DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAKY  278 (557)
T ss_pred             -CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHHh
Confidence             5677776553 443  57785 577755 566776665544

>PLN02463 lycopene beta cyclase

Probab=98.72  E-value=4.6e-08  Score=99.12  Aligned_cols=124  Identities=19%  Similarity=0.298  Sum_probs=73.8

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CC-ccc--------c---CCC------CCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LT-KGY--------L---FPL------DKKP  117 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~-~~~--------l---~~~------~~~~  117 (497)
                      ....+||+||||||||+++|..|++.|+   +|+|+|+.+...+.+.. .. ..+        +   .+.      ....
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~  101 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK  101 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC
Confidence            4456899999999999999999999988   89999997654332110 00 000        0   000      0000


Q ss_pred             CCCCC-CccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          118 ARLPG-FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ..... +...........+.+.+.+.|++++. ++|.+++....  .|++++|.++.+|.||.|+|....
T Consensus       102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             ccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            00000 00000000001122233456899874 68888876543  577888888999999999998754

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.72  E-value=1.6e-07  Score=97.54  Aligned_cols=55  Identities=31%  Similarity=0.441  Sum_probs=36.3

Q ss_pred             CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      -|||.+|.+.+|+.|++||+|+|+.....-.++.. -.+...+...|+.+++++..
T Consensus       341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~  395 (513)
T PRK07512        341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAG  395 (513)
T ss_pred             cCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999732111111111 12344566677777776643

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.71  E-value=5.7e-08  Score=99.38  Aligned_cols=97  Identities=16%  Similarity=0.350  Sum_probs=73.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||++|+.+|..|++.|.   +|+++++.+...            +..  ...+           .....+.+
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l------------~~~--~~~~-----------~~~~~~~l  208 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTIL------------PRE--EPSV-----------AALAKQYM  208 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccC------------CCC--CHHH-----------HHHHHHHH
Confidence            4689999999999999999999886   899999976531            000  0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEE-EECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v-~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.|+++++++++++++.+...+ ...+++++.+|.+|+|+|..|.
T Consensus       209 ~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        209 EEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN  254 (438)
T ss_pred             HHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence            88999999999999998765443 3345678999999999999876

>PRK06834 hypothetical protein; Provisional

Probab=98.71  E-value=8.3e-08  Score=99.03  Aligned_cols=123  Identities=22%  Similarity=0.312  Sum_probs=74.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCC-CCC-------------ccccCCCCCC------
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERP-ALT-------------KGYLFPLDKK------  116 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~-~l~-------------~~~l~~~~~~------  116 (497)
                      ..++|+||||||+|+++|..|+++|+   +|+|+|+.+...+  .|. .++             ..+.......      
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~   78 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA   78 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence            35799999999999999999999998   8999999864321  110 010             0000000000      


Q ss_pred             --CCCCCCCcc--ccC-----CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          117 --PARLPGFHT--CVG-----SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       117 --~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                        ..++.....  ..+     ......+.+.+++.|++++.+++++.+..+..  .+++.++.++.+|+||.|.|....
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834         79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence              000000000  000     00001122334567999999999999876554  456667778999999999998754

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.71  E-value=2.5e-07  Score=88.90  Aligned_cols=110  Identities=17%  Similarity=0.300  Sum_probs=86.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  254 (497)
                      ..|+|||+|+.|+-+|..+++.|.+|++++..+++...                                          
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            46999999999999999999999999999988433211                                          


Q ss_pred             -------------------cc-----CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          255 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       255 -------------------~~-----~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                                         .|     ...+.+.+.+++++.||+++++++|.+++..+  ....+.+.+|+++.||.+|+
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence                               11     12356778888999999999999999999653  33468889998999999999


Q ss_pred             eccC--cCCC-------cchhhcCCcc
Q 010917          311 GIGA--KPTV-------SPFERVGLNS  328 (497)
Q Consensus       311 a~G~--~p~~-------~~~~~~gl~~  328 (497)
                      |+|-  -|.+       .++++.|+..
T Consensus       162 AtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         162 ATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             ecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            9994  4532       2467777664

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.70  E-value=1.2e-07  Score=99.71  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=29.4

Q ss_pred             cEEEEcCchHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY   97 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~----~~g~~~~~V~lie~~~~   97 (497)
                      ||||||||.|||+||.+++    +.|.   +|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence            7999999999999999998    5666   8999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.70  E-value=1.9e-07  Score=94.06  Aligned_cols=66  Identities=23%  Similarity=0.319  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl  326 (497)
                      ...+...+.+.+++.|++++.++.|.+++..+ +.+ .+.+.+| ++.+|.||+|+|...+ .+++.+++
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~  213 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL  213 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence            34677788888899999999999999998643 333 4666666 6999999999998754 45554444

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.69  E-value=3.3e-07  Score=96.74  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.||||||+|.|||+||.++++.|.   +|+||||.+
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~   36 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVP   36 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCC---cEEEEEccC
Confidence            4699999999999999999999987   899999865

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.68  E-value=5.5e-08  Score=91.32  Aligned_cols=120  Identities=15%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-------------CC-CC-CCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-------------KP-AR-LPGF  123 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~-------------~~-~~-~~~~  123 (497)
                      ..+||+||||||||++||+.|++.|+   +|+|+|+.+......  ...+.+++...             .+ .. -.+.
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~   98 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGL   98 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCcc
Confidence            45899999999999999999999988   899999986542110  00111111000             00 00 0000


Q ss_pred             ccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC-EE---EEC-----------CCcEEEeccEEeccCCCC
Q 010917          124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TL---ITN-----------SGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v---~~~-----------~g~~i~~d~lvlAtG~~~  183 (497)
                      ...........+.+...+.|++++.+++|..+..++. ++   ...           +...+.++.+|+|||...
T Consensus        99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176         99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            0000001111223334567999999999988764332 22   111           124689999999999754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.67  E-value=4.7e-08  Score=100.79  Aligned_cols=98  Identities=20%  Similarity=0.335  Sum_probs=73.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||++|+.+|..|++.|.   +|+|+++.+...   +.+.           ..+           .....+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~-----------~~~-----------~~~~~~~l  221 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL---PGED-----------AEV-----------SKVVAKAL  221 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC---CCCC-----------HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999876421   0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCE--EEECCC--cEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQT--LITNSG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++++++|.+++.+...  +.+.+|  .++.+|.||+|+|..|..
T Consensus       222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~  271 (461)
T TIGR01350       222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT  271 (461)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence            8889999999999998865543  344456  479999999999998763

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07190 hypothetical protein; Provisional

Probab=98.66  E-value=8.6e-08  Score=98.78  Aligned_cols=123  Identities=20%  Similarity=0.219  Sum_probs=73.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC--------------CCCcccc-----------C
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP--------------ALTKGYL-----------F  111 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-~~~~--------------~l~~~~l-----------~  111 (497)
                      +..++|+||||||+||++|..|+++|.   +|+|||+.+... ..+.              .+...+.           +
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~   79 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVW   79 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEe
Confidence            345799999999999999999999998   899999986431 1110              0000000           0


Q ss_pred             CCCCCC-------CCCCCC--c--cccCC-CCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEe
Q 010917          112 PLDKKP-------ARLPGF--H--TCVGS-GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV  177 (497)
Q Consensus       112 ~~~~~~-------~~~~~~--~--~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvl  177 (497)
                      ......       ..+.+.  .  ..... .....+.+.+.+.|++++.+++|+.+..+..  .+.+.+|+++.+++||.
T Consensus        80 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVg  159 (487)
T PRK07190         80 ANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIG  159 (487)
T ss_pred             cCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEE
Confidence            000000       000000  0  00000 0000112334567999999999999876543  45667778899999999


Q ss_pred             ccCCCC
Q 010917          178 ATGCTA  183 (497)
Q Consensus       178 AtG~~~  183 (497)
                      |+|...
T Consensus       160 ADG~~S  165 (487)
T PRK07190        160 ADGSRS  165 (487)
T ss_pred             CCCCCH
Confidence            999864

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.65  E-value=5.5e-07  Score=92.14  Aligned_cols=87  Identities=14%  Similarity=0.190  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHHhCCCc------EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC-CC--CcEEEE
Q 010917          225 GYIGMEVAAAAVGWKLD------TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAV  295 (497)
Q Consensus       225 G~~g~e~A~~l~~~g~~------Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~--~~v~~v  295 (497)
                      -.++.|+...+.+.-.+      ..-+.+.. .  . -.+.+...+.+.++++||+|+++++|+++..+ ++  +++.++
T Consensus       191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~-y--n-qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI  266 (576)
T PRK13977        191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTK-Y--N-QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAI  266 (576)
T ss_pred             hhHHHHHHHHHHHHHHhhccCCccccccCCC-C--C-chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEE
Confidence            35788888888655211      11111111 1  1 23678888999999999999999999998864 22  567777


Q ss_pred             EeC-CC--c---EEEcCEEEEeccCc
Q 010917          296 KLE-DG--S---TIDADTIVIGIGAK  315 (497)
Q Consensus       296 ~~~-~g--~---~i~~D~vv~a~G~~  315 (497)
                      ... +|  +   ..+.|.||+++|.-
T Consensus       267 ~~~~~~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        267 HLTRNGKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             EEEeCCceeEEEecCCCEEEEeCCcC
Confidence            774 23  2   35689999999964

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.64  E-value=1e-07  Score=96.58  Aligned_cols=124  Identities=17%  Similarity=0.203  Sum_probs=72.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CC-CCC-------------cccc-----------C
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RP-ALT-------------KGYL-----------F  111 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~-~l~-------------~~~l-----------~  111 (497)
                      ++||+||||||+|+++|..|+++|. ..+|+|+|+.+.....   +. .++             ..+.           .
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~-g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   79 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAP-HLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT   79 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence            3799999999999999999999862 2389999997642110   00 000             0000           0


Q ss_pred             C-CCCCC-----CCCC-----CCc---cccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccE
Q 010917          112 P-LDKKP-----ARLP-----GFH---TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL  175 (497)
Q Consensus       112 ~-~~~~~-----~~~~-----~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~l  175 (497)
                      . .....     ..+.     +..   ..........+.+.+.+.|++++.+++|+.++.+..  .+++++|..+.+|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  159 (403)
T PRK07333         80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL  159 (403)
T ss_pred             eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence            0 00000     0000     000   000000011122334556999999999999876554  466678888999999


Q ss_pred             EeccCCCCC
Q 010917          176 IVATGCTAS  184 (497)
Q Consensus       176 vlAtG~~~~  184 (497)
                      |.|+|....
T Consensus       160 I~AdG~~S~  168 (403)
T PRK07333        160 VAADGARSK  168 (403)
T ss_pred             EEcCCCChH
Confidence            999997643

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.63  E-value=8e-08  Score=89.92  Aligned_cols=119  Identities=15%  Similarity=0.183  Sum_probs=69.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCC-------------CCCCCC-C-CCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL-------------DKKPAR-L-PGF  123 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~-------------~~~~~~-~-~~~  123 (497)
                      ..+||+||||||||++||+.|+++|+   +|+|+|+........  ...+.+++.             ...+.. . .++
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~   94 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY   94 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence            36899999999999999999999987   899999987643110  000111000             000000 0 000


Q ss_pred             ccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--E---EEEC-----------CCcEEEeccEEeccCCC
Q 010917          124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T---LITN-----------SGKLLKYGSLIVATGCT  182 (497)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~g~~i~~d~lvlAtG~~  182 (497)
                      ...........+.+...+.|++++.++.|..+..++.  +   +.+.           +...+.++.+|.|||..
T Consensus        95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292        95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD  169 (254)
T ss_pred             EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence            0000000111222334567999999999988765433  2   2222           12468999999999964

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.63  E-value=1.4e-07  Score=100.52  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||||.|||+||..+++.|.   +|+|+||.+
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~   38 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVP   38 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCC
Confidence            45799999999999999999999987   899999865

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.62  E-value=8e-08  Score=72.98  Aligned_cols=78  Identities=18%  Similarity=0.366  Sum_probs=58.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  141 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (497)
                      +|+|||||+.|+.+|..|++.|.   +|+|+++.+.+.   +.+..           ..           .....+++++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~---~~~~~-----------~~-----------~~~~~~~l~~   52 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL---PGFDP-----------DA-----------AKILEEYLRK   52 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS---TTSSH-----------HH-----------HHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh---hhcCH-----------HH-----------HHHHHHHHHH
Confidence            68999999999999999999987   899999987642   11100           00           1234677889


Q ss_pred             cCcEEEeCCcEEEEecCCCE--EEECCC
Q 010917          142 KGIEMIYQDPVTSIDIEKQT--LITNSG  167 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~~--v~~~~g  167 (497)
                      .||++++++.+..++.+...  |+++||
T Consensus        53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            99999999999999876643  565554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06184 hypothetical protein; Provisional

Probab=98.61  E-value=1.5e-07  Score=98.10  Aligned_cols=121  Identities=15%  Similarity=0.162  Sum_probs=71.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC--------------CCCCcccc-----------CCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PALTKGYL-----------FPL  113 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~--------------~~l~~~~l-----------~~~  113 (497)
                      +.+|+||||||+||++|..|+++|+   +|+|||+.+...- .+              -.+...+.           +..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~   79 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRD   79 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeC
Confidence            5799999999999999999999998   8999999864310 00              00000000           000


Q ss_pred             CCCC--CCCC-------C--Ccc---ccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEE---CCCcEEEecc
Q 010917          114 DKKP--ARLP-------G--FHT---CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGS  174 (497)
Q Consensus       114 ~~~~--~~~~-------~--~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~  174 (497)
                      ....  ..+.       .  +..   +........+.+.+.+.|++++.++++++++.+..  ++++   ++++++.+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~  159 (502)
T PRK06184         80 DGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARY  159 (502)
T ss_pred             CceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCE
Confidence            0000  0000       0  000   00000001122334556899999999999876544  3444   5567899999


Q ss_pred             EEeccCCCC
Q 010917          175 LIVATGCTA  183 (497)
Q Consensus       175 lvlAtG~~~  183 (497)
                      ||.|+|...
T Consensus       160 vVgADG~~S  168 (502)
T PRK06184        160 LVGADGGRS  168 (502)
T ss_pred             EEECCCCch
Confidence            999999864

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.60  E-value=2.9e-07  Score=97.16  Aligned_cols=102  Identities=21%  Similarity=0.267  Sum_probs=67.8

Q ss_pred             cCCeEEEEcCCHHH-HHHHHHHHhCCCcEEEEecCCcchhh-------------ccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917          215 KAKKVVVVGGGYIG-MEVAAAAVGWKLDTTIIFPENHLLQR-------------LFTPSLAQRYEQLYQQNGVKFVKGAS  280 (497)
Q Consensus       215 ~~~~vvVvG~G~~g-~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~GV~i~~~~~  280 (497)
                      ...++.++|++.++ .+++..+...+..+.+..+..+++..             ..+..+...+.+.+++.|++++.++.
T Consensus       160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~  239 (581)
T PRK06134        160 PLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAP  239 (581)
T ss_pred             ccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCE
Confidence            44567778877665 67777776666555443322221111             12345667788888999999999999


Q ss_pred             EEEEEeCCCCcEEEEEeC--CCc-EEEc-CEEEEeccCcCC
Q 010917          281 IKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT  317 (497)
Q Consensus       281 v~~i~~~~~~~v~~v~~~--~g~-~i~~-D~vv~a~G~~p~  317 (497)
                      ++++..+ ++++.+|...  ++. ++.+ +.||+|+|.-.+
T Consensus       240 v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        240 ARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             EEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            9998754 5677666543  333 5788 999999987654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.59  E-value=1.2e-07  Score=95.53  Aligned_cols=124  Identities=19%  Similarity=0.330  Sum_probs=74.3

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--C-----CCCc---ccc-----CCCCC--CCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--P-----ALTK---GYL-----FPLDK--KPARL  120 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~--~-----~l~~---~~l-----~~~~~--~~~~~  120 (497)
                      ..++||+||||||+|+++|..|+++|+   +|+|||+.+...+..  +     .+..   ..+     .....  ....+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGL---SVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY   80 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence            345899999999999999999999998   899999976432210  0     0000   000     00000  00000


Q ss_pred             CCC----------ccc----cCCC----------CCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEecc
Q 010917          121 PGF----------HTC----VGSG----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS  174 (497)
Q Consensus       121 ~~~----------~~~----~~~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~  174 (497)
                      ...          ..+    .+..          +...+.+.+++.|++++.+++|+++..+..  ++++++|.++.+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~  160 (392)
T PRK08773         81 RRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAAL  160 (392)
T ss_pred             cEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCE
Confidence            000          000    0000          000112224456999999999998876544  46667788899999


Q ss_pred             EEeccCCCCC
Q 010917          175 LIVATGCTAS  184 (497)
Q Consensus       175 lvlAtG~~~~  184 (497)
                      ||.|+|....
T Consensus       161 vV~AdG~~S~  170 (392)
T PRK08773        161 AIAADGAAST  170 (392)
T ss_pred             EEEecCCCch
Confidence            9999998753

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.56  E-value=1.9e-07  Score=94.09  Aligned_cols=118  Identities=15%  Similarity=0.184  Sum_probs=68.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCccccC--C-CCCCCCCCCC--------Ccc----
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYLF--P-LDKKPARLPG--------FHT----  125 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~~l~--~-~~~~~~~~~~--------~~~----  125 (497)
                      ||+||||||||+++|..|++.|+   +|+|||+.+..+.... .+....+.  . .......+.+        ...    
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT   77 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence            69999999999999999999988   8999999865432210 00000000  0 0000000000        000    


Q ss_pred             ----ccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC-C--CEEEECCCcEEEeccEEeccCCCC
Q 010917          126 ----CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       126 ----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~--~~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                          .....+...+.+.+.+.|++++ ..+|..+... .  ..+++++|.++.+|.||.|+|..+
T Consensus        78 ~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        78 AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence                0000001112233355688886 4578877655 2  356777887899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.56  E-value=7.3e-07  Score=77.23  Aligned_cols=118  Identities=15%  Similarity=0.283  Sum_probs=65.2

Q ss_pred             EEEcCchHHHHHHHHHHHcC--CCCCcEEEEcCCCCC---CCCCCCCCccccCCCC----CCCCCC-CCCccccCCCC--
Q 010917           64 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAYA---PYERPALTKGYLFPLD----KKPARL-PGFHTCVGSGG--  131 (497)
Q Consensus        64 vIIGgG~AGl~aA~~L~~~g--~~~~~V~lie~~~~~---~~~~~~l~~~~l~~~~----~~~~~~-~~~~~~~~~~~--  131 (497)
                      +|||||++|++++.+|.+..  ....+|+|||+.+..   +|.........+....    ..+.+. +.|..|.....  
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            59999999999999999984  346799999996542   2332111100110000    000000 11111111110  


Q ss_pred             --------CC--------CCHhHH----HH--cCcEEE-eCCcEEEEecCCC--EEEECCCcEEEeccEEeccCC
Q 010917          132 --------ER--------QTPEWY----KE--KGIEMI-YQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC  181 (497)
Q Consensus       132 --------~~--------~~~~~~----~~--~~v~~~-~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~  181 (497)
                              ..        ++.+.+    +.  .++++. ...+|+.++....  .+.+++|..+.+|+||||||.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence                    00        111111    11  244432 2358888887544  678899999999999999994

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.54  E-value=1.9e-06  Score=82.42  Aligned_cols=58  Identities=19%  Similarity=0.313  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEeccCcCC
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~~D~vv~a~G~~p~  317 (497)
                      +..++-+..++.||+++++....++--+++|.|.+|.++|               |-++.+..-|+|-|-+..
T Consensus       185 ~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~  257 (621)
T KOG2415|consen  185 LVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS  257 (621)
T ss_pred             HHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence            4456666678999999999998888888889888887754               235778888999888764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.54  E-value=3.3e-07  Score=92.43  Aligned_cols=124  Identities=17%  Similarity=0.270  Sum_probs=72.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC--------CC-------cccc-CCCC----CCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--------LT-------KGYL-FPLD----KKP  117 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~--------l~-------~~~l-~~~~----~~~  117 (497)
                      ...+||+||||||+|+++|..|++.|+   +|+|+|+.+...+....        ++       +.+- ....    ..+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~   79 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP   79 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence            345899999999999999999999998   89999997532221000        00       0000 0000    000


Q ss_pred             -CC-----CCC-Cccc-----cCCC--C-CC--CC----HhHHHHc-CcEEEeCCcEEEEecCCC--EEEECCCcEEEec
Q 010917          118 -AR-----LPG-FHTC-----VGSG--G-ER--QT----PEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  173 (497)
Q Consensus       118 -~~-----~~~-~~~~-----~~~~--~-~~--~~----~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d  173 (497)
                       ..     ... ....     ....  + ..  .+    .+.+.+. +++++.+++++.+..+..  .+.++++.++.+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~  159 (391)
T PRK08020         80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK  159 (391)
T ss_pred             cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence             00     000 0000     0000  0 00  01    1122334 899998999998865443  4666788889999


Q ss_pred             cEEeccCCCCC
Q 010917          174 SLIVATGCTAS  184 (497)
Q Consensus       174 ~lvlAtG~~~~  184 (497)
                      .||.|.|....
T Consensus       160 ~vI~AdG~~S~  170 (391)
T PRK08020        160 LVIGADGANSQ  170 (391)
T ss_pred             EEEEeCCCCch
Confidence            99999998653

>PRK07236 hypothetical protein; Provisional

Probab=98.53  E-value=6e-07  Score=90.32  Aligned_cols=123  Identities=13%  Similarity=0.070  Sum_probs=71.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--CCcc---ccC--CCC-CCCCCCC--CC--c
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YLF--PLD-KKPARLP--GF--H  124 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~--l~~~---~l~--~~~-~~~~~~~--~~--~  124 (497)
                      ++..+|+|||||++|+++|..|++.|+   +|+|+|+.+...-.+. .  +...   .+.  +.. ......+  ..  .
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   80 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL   80 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence            445899999999999999999999998   8999999864311110 0  0000   000  000 0000000  00  0


Q ss_pred             cccCC-----CC------CCCCHhHHH-H-cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917          125 TCVGS-----GG------ERQTPEWYK-E-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       125 ~~~~~-----~~------~~~~~~~~~-~-~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      ...+.     ..      ...+...+. . .+++++.+++|+.+..+..  ++++++|+++.+|.||.|-|...
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S  154 (386)
T PRK07236         81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS  154 (386)
T ss_pred             eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            00000     00      000111121 1 2467899999999976554  46778898999999999999754

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.52  E-value=8.7e-08  Score=99.89  Aligned_cols=56  Identities=29%  Similarity=0.421  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      ..+.+.+.+.+++.|+++++++.|.+|... ++++..|.+.+|+++.+|.||++++.
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcH
Confidence            467788888899999999999999999864 56666888999999999999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.52  E-value=6.9e-06  Score=76.95  Aligned_cols=166  Identities=18%  Similarity=0.211  Sum_probs=102.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------ccCH
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP  258 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------~~~~  258 (497)
                      .-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+...                                     ....
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            457999999999999999999999999999987543100                                     0112


Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC-cEEEEEeCC-----------CcEEEcCEEEEeccCcCCC-cch-hhc
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTIVIGIGAKPTV-SPF-ERV  324 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~-~v~~v~~~~-----------g~~i~~D~vv~a~G~~p~~-~~~-~~~  324 (497)
                      ++.+.+.+...+.|++++.++.+.++...+++ ++.++....           ..++.++.||.|+|..... .++ +..
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            34455666677899999999999998765442 566766532           2479999999999976432 222 222


Q ss_pred             CCcccC------CCEEecC-------CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          325 GLNSSV------GGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       325 gl~~~~------g~i~vd~-------~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      ++....      +....+.       +-+--+|++|++|=.+.-.... .++.+  ....=...|+.+|+.++
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~-~rmgp--~fg~m~~sg~~~a~~~~  250 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGL-PRMGP--IFGGMLLSGKHVAEQIL  250 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCC-CCcCc--hHHHHHHhhHHHHHHHH
Confidence            222110      0111110       1111479999999776522110 11111  12212345777777665

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.51  E-value=4.4e-07  Score=92.59  Aligned_cols=98  Identities=21%  Similarity=0.314  Sum_probs=75.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||++|+.+|..|++.|.   +|+++++.+....  +.+.           ..+           .....+.+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~~--~~~~-----------~~~-----------~~~~~~~l  189 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERILN--KLFD-----------EEM-----------NQIVEEEL  189 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccCc--cccC-----------HHH-----------HHHHHHHH
Confidence            4799999999999999999999886   8999998764210  0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.||+++.++++.+++.+...+.+.+|+++.+|.||+|+|..|.
T Consensus       190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence            888999999999999987666556678888999999999998876

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.51  E-value=4.6e-06  Score=78.35  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=76.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------ccCH
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP  258 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------~~~~  258 (497)
                      ...|+|||+|+.|+-+|..|++.|.+|.++++.+.+...                                     ....
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            357999999999999999999999999999987543210                                     0012


Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeccCcCC
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vv~a~G~~p~  317 (497)
                      .+...+.+...+.|++++.++.+.++...+++++.++...           +..++.++.||.|+|....
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence            3445566667889999999999999876544466665542           2247999999999997543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.51  E-value=1.3e-06  Score=90.69  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=33.7

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...++||||||||.|||.||..+++.|.   +|+|+||.+
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~   39 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAP   39 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEccc
Confidence            3456899999999999999999999997   899999986

>PRK09126 hypothetical protein; Provisional

Probab=98.51  E-value=7.7e-07  Score=89.76  Aligned_cols=122  Identities=23%  Similarity=0.339  Sum_probs=71.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-------CCc---------cc---cCCCCCCCC--
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-------LTK---------GY---LFPLDKKPA--  118 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-------l~~---------~~---l~~~~~~~~--  118 (497)
                      +++|+||||||+|+++|..|+++|+   +|+|+|+.+......+.       +..         +.   +......+.  
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~   79 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRD   79 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccce
Confidence            5899999999999999999999998   89999998652110000       000         00   000000000  


Q ss_pred             ------CCCCCccccC----CCCC------CCCH----hHH-HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccE
Q 010917          119 ------RLPGFHTCVG----SGGE------RQTP----EWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL  175 (497)
Q Consensus       119 ------~~~~~~~~~~----~~~~------~~~~----~~~-~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~l  175 (497)
                            ..........    ....      ..+.    +.+ +..|++++.+++|+.++....  .+.+++|+++.+|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~v  159 (392)
T PRK09126         80 AKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLL  159 (392)
T ss_pred             EEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEE
Confidence                  0000000000    0000      0011    111 235899999999998875543  566778888999999


Q ss_pred             EeccCCCCC
Q 010917          176 IVATGCTAS  184 (497)
Q Consensus       176 vlAtG~~~~  184 (497)
                      |.|.|....
T Consensus       160 I~AdG~~S~  168 (392)
T PRK09126        160 VAADSRFSA  168 (392)
T ss_pred             EEeCCCCch
Confidence            999997643

>PRK08244 hypothetical protein; Provisional

Probab=98.50  E-value=4.4e-07  Score=94.34  Aligned_cols=121  Identities=17%  Similarity=0.305  Sum_probs=70.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCC--------------CCCCccccC----------CCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER--------------PALTKGYLF----------PLD  114 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-~~~--------------~~l~~~~l~----------~~~  114 (497)
                      +++|+||||||+|+++|..|++.|+   +|+|||+.+... ..+              -.+...+..          ...
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~   78 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL   78 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence            4799999999999999999999998   899999986431 110              000000000          000


Q ss_pred             CCCCCCCCCcc-------ccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCE--EEEC--CC-cEEEeccEEeccCCC
Q 010917          115 KKPARLPGFHT-------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITN--SG-KLLKYGSLIVATGCT  182 (497)
Q Consensus       115 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~--~g-~~i~~d~lvlAtG~~  182 (497)
                      ....++.....       +........+.+.+++.|++++.+++++++..+...  +++.  +| .++++|+||.|.|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~  158 (493)
T PRK08244         79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG  158 (493)
T ss_pred             cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence            00000000000       000000011122345569999999999998765543  3333  45 479999999999986


Q ss_pred             C
Q 010917          183 A  183 (497)
Q Consensus       183 ~  183 (497)
                      .
T Consensus       159 S  159 (493)
T PRK08244        159 S  159 (493)
T ss_pred             h
Confidence            5

>PLN02697 lycopene epsilon cyclase

Probab=98.50  E-value=3.1e-07  Score=94.64  Aligned_cols=119  Identities=14%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CCcccc--CCC-CCCCCCCCCC--------ccc
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPL-DKKPARLPGF--------HTC  126 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~l--~~~-~~~~~~~~~~--------~~~  126 (497)
                      ..+||+||||||||+++|..|++.|+   +|+|||+...  +..+. .+...+  .+. ......+++.        ...
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~  181 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM  181 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCC---cEEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence            45899999999999999999999998   8999998532  21110 000000  000 0000000000        000


Q ss_pred             cCCCCC--------CCCHhHHHHcCcEEEeCCcEEEEecCCC--E-EEECCCcEEEeccEEeccCCCC
Q 010917          127 VGSGGE--------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       127 ~~~~~~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~-v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      .+..+.        ..+.+.+.+.|+++ .+++|+.+..+..  . +++.+|.++.++.||.|+|...
T Consensus       182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        182 IGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             ccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            000000        11222234568998 4678988875433  2 4557788899999999999876

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.50  E-value=1.4e-06  Score=93.84  Aligned_cols=57  Identities=19%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+...+.+.+++ |++++.++.|++++.. ++.+ .|.+.+|..+.+|.||+|+|....
T Consensus       408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        408 AELCRALLALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             HHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence            4566777777777 9999999999999864 3444 377788877899999999998654

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.49  E-value=1.7e-07  Score=95.66  Aligned_cols=58  Identities=31%  Similarity=0.579  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      .+.+.+.+...+.||+++.++ |+++...+++.+..|++++|+++.+|.+|-|+|++..
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            566678888889999999885 7777777788898999999999999999999999753

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.49  E-value=1.4e-06  Score=89.52  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeccC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA  314 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~~D~vv~a~G~  314 (497)
                      ..+.+.+.+.+++.|++|++++.|++|...+++++.++.+.+++     ++.+|.||+++..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            45667778888889999999999999986556777778886665     7999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.49  E-value=4e-07  Score=91.71  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=72.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CC-CCCc---ccc----------------------
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RP-ALTK---GYL----------------------  110 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~-~l~~---~~l----------------------  110 (497)
                      +.+++|+||||||||+++|..|+++|+   +|+|+|+.+..... +. .+..   ..+                      
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~   79 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGH---SVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRL   79 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCC---cEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEE
Confidence            345799999999999999999999998   89999998754210 00 0000   000                      


Q ss_pred             CCCCCCCCCCCCCccccCCCCC-----CCCHhHH----H-HcCcEEEeCCcEEEEecCC-C---EEEECCCcEEEeccEE
Q 010917          111 FPLDKKPARLPGFHTCVGSGGE-----RQTPEWY----K-EKGIEMIYQDPVTSIDIEK-Q---TLITNSGKLLKYGSLI  176 (497)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~-~~~v~~~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~lv  176 (497)
                      .........+. +.......+.     ..+.+.+    . ..+++++++++++.+.... .   .+++++|+++.+|.||
T Consensus        80 ~~~g~~~~~~~-~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vI  158 (388)
T PRK07045         80 YHDKELIASLD-YRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLV  158 (388)
T ss_pred             ecCCcEEEEec-CCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEE
Confidence            00000000000 0000000000     0011111    2 2478999999999887543 2   4777888899999999


Q ss_pred             eccCCCC
Q 010917          177 VATGCTA  183 (497)
Q Consensus       177 lAtG~~~  183 (497)
                      -|.|...
T Consensus       159 gADG~~S  165 (388)
T PRK07045        159 GADGARS  165 (388)
T ss_pred             ECCCCCh
Confidence            9999764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.48  E-value=3.9e-06  Score=84.29  Aligned_cols=65  Identities=20%  Similarity=0.361  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl  326 (497)
                      ..+...+.+.+++.|++++.+++|.+++.. ++.+ .+.+.++ ++.+|.||+|+|.... .++..+++
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g~  209 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLGI  209 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhccc
Confidence            355667777788899999999999999864 3333 4666665 6999999999997543 44444443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.47  E-value=9.9e-07  Score=88.19  Aligned_cols=98  Identities=20%  Similarity=0.352  Sum_probs=66.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      +|+|||||+.|+-+|..+++.|.+|.|+++.+++..+                                           
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            5899999999999999999999999999998433211                                           


Q ss_pred             -----------------------c-cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          255 -----------------------L-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       255 -----------------------~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                                             . -..++.+.+.+.+++.||+++++++|.+++.. ++.+..|.++++.++.+|.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence                                   0 01235567788889999999999999999865 4444567887888999999999


Q ss_pred             eccCcC
Q 010917          311 GIGAKP  316 (497)
Q Consensus       311 a~G~~p  316 (497)
                      |+|-..
T Consensus       161 AtGG~S  166 (409)
T PF03486_consen  161 ATGGKS  166 (409)
T ss_dssp             ----SS
T ss_pred             ecCCCC
Confidence            999754

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN02612 phytoene desaturase

Probab=98.46  E-value=3.5e-06  Score=88.55  Aligned_cols=57  Identities=25%  Similarity=0.327  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      ..+.+.+.+.+++.|.+|++++.|++|+.++++.+..+.+.+|+++.+|.||++++.
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            456677888888899999999999999876677777788889999999999999763

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.46  E-value=4.6e-07  Score=91.25  Aligned_cols=120  Identities=21%  Similarity=0.315  Sum_probs=70.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-------CCCc---cccCCC---CC------CC---
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-------ALTK---GYLFPL---DK------KP---  117 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-------~l~~---~~l~~~---~~------~~---  117 (497)
                      ++||+||||||||+++|..|++.|+   +|+|+|+.+.......       .++.   ..+...   ..      .+   
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   81 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD   81 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence            5799999999999999999999988   8999999865321000       0000   000000   00      00   


Q ss_pred             --------CC---------CCCCcc-ccCCCCCCCCHhHHHHcC-cEEEeCCcEEEEecCCC--EEEECCCcEEEeccEE
Q 010917          118 --------AR---------LPGFHT-CVGSGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI  176 (497)
Q Consensus       118 --------~~---------~~~~~~-~~~~~~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lv  176 (497)
                              ..         .+.... .........+.+.+.+.+ ++++ +++++++.....  .+++.+|.++.+|.||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI  160 (388)
T PRK07608         82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVV  160 (388)
T ss_pred             EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEE
Confidence                    00         000000 000000011223344556 8888 888888865433  5677788789999999


Q ss_pred             eccCCCC
Q 010917          177 VATGCTA  183 (497)
Q Consensus       177 lAtG~~~  183 (497)
                      .|+|...
T Consensus       161 ~adG~~S  167 (388)
T PRK07608        161 GADGAHS  167 (388)
T ss_pred             EeCCCCc
Confidence            9999864

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.46  E-value=4.5e-07  Score=92.19  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=34.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      +.++||+||||||||+++|..|++.|+   +|+|+|+.+..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence            346899999999999999999999998   89999998753

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.46  E-value=8.3e-07  Score=88.63  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ++|+|||||+|||+||+.|++++. +.+|+|+|+++..
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p-~~~i~lfE~~~r~   37 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGP-DVEVTLFEADDRV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCC-CCcEEEEecCCCC
Confidence            379999999999999999999995 6799999998754

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.45  E-value=7.8e-07  Score=89.14  Aligned_cols=99  Identities=16%  Similarity=0.339  Sum_probs=76.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...-       ..+      +...           ...+.+.
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l~-------~~~------~~~~-----------~~~l~~~  192 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLLA-------SLM------PPEV-----------SSRLQHR  192 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCcccc-------hhC------CHHH-----------HHHHHHH
Confidence            35789999999999999999999887   8999998765310       000      0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.|++++.++++.+++.+..  .+.+.+|+++.+|.+|+|+|..|.
T Consensus       193 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        193 LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence            7889999999999999987543  467788889999999999998875

>PRK08013 oxidoreductase; Provisional

Probab=98.45  E-value=4e-07  Score=91.98  Aligned_cols=121  Identities=16%  Similarity=0.202  Sum_probs=71.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------C-----C---------CCCccccCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------R-----P---------ALTKGYLFPLDKKPA  118 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-------~-----~---------~l~~~~l~~~~~~~~  118 (497)
                      .+||+||||||+|+++|..|++.|+   +|+|+|+.+...-.       +     |         .+.............
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~   79 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH   79 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence            4799999999999999999999998   89999998652210       0     0         000000000000000


Q ss_pred             CC-----C--CCccc----cCCCC----CC--CCHh----HHHHc-CcEEEeCCcEEEEecCC--CEEEECCCcEEEecc
Q 010917          119 RL-----P--GFHTC----VGSGG----ER--QTPE----WYKEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGS  174 (497)
Q Consensus       119 ~~-----~--~~~~~----~~~~~----~~--~~~~----~~~~~-~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~  174 (497)
                      .+     .  +....    .+...    ..  .+..    .+.+. +++++.+++++.++.+.  .++++.+|+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l  159 (400)
T PRK08013         80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL  159 (400)
T ss_pred             EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence            00     0  00000    00000    00  0111    12332 79999999999886544  356777888999999


Q ss_pred             EEeccCCCC
Q 010917          175 LIVATGCTA  183 (497)
Q Consensus       175 lvlAtG~~~  183 (497)
                      ||-|.|...
T Consensus       160 vVgADG~~S  168 (400)
T PRK08013        160 VVGADGANS  168 (400)
T ss_pred             EEEeCCCCc
Confidence            999999764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.45  E-value=1.4e-06  Score=87.78  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=34.1

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ++..+||+||||||+|+++|..|+++|+   +|+|||+.+.
T Consensus         4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~   41 (388)
T PRK07494          4 EKEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPP   41 (388)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCC
Confidence            4556799999999999999999999998   8999999864

>PRK07233 hypothetical protein; Provisional

Probab=98.45  E-value=6e-07  Score=91.83  Aligned_cols=55  Identities=18%  Similarity=0.303  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      ..+.+.+.+.+++.|++++++++|++|+.. ++.+..+. .+++++++|.||+|++.
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCH
Confidence            456777888888999999999999999865 34443343 56778999999999875

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.45  E-value=2.4e-06  Score=86.66  Aligned_cols=56  Identities=18%  Similarity=0.383  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEeccCcC
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKP  316 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-----g~~i~~D~vv~a~G~~p  316 (497)
                      .+...+.+.+++.|++++.++.|++++.. ++.+ .+.+.+     +.++.+|.||+|+|...
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence            45566778889999999999999999864 3333 233322     23799999999999764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.45  E-value=1.3e-06  Score=88.01  Aligned_cols=99  Identities=26%  Similarity=0.377  Sum_probs=73.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchh-h-ccCHHHH---------HHHHHHHHHCCcEEEcCCeEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ-R-LFTPSLA---------QRYEQLYQQNGVKFVKGASIK  282 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-~-~~~~~~~---------~~~~~~l~~~GV~i~~~~~v~  282 (497)
                      .++|+|||+|+.|+.+|..|++.+.  +|+++++.+.+.. + .+...+.         ..-.+.+.+.||+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4689999999999999999999876  6899987654211 0 1111110         001244677899999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                      .++..  .+  .+.+.+|+++.+|.+|+|||.+|..
T Consensus        83 ~id~~--~~--~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGRD--TR--ELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEECC--CC--EEEECCCCEEEcCEEEEccCCCCCC
Confidence            99753  22  4667888899999999999999853

>PRK05868 hypothetical protein; Validated

Probab=98.45  E-value=6.8e-07  Score=89.28  Aligned_cols=121  Identities=16%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---------------CCCCCccc-----------cC-C
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------------RPALTKGY-----------LF-P  112 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---------------~~~l~~~~-----------l~-~  112 (497)
                      +++|+|||||++|+++|..|+++|+   +|+|+|+.+...-.               +..+...+           +. .
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~   77 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR   77 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence            3699999999999999999999998   89999998643210               00000000           00 0


Q ss_pred             CCCCCCCCCC---CccccCCCCCC----CCHhHHH---HcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccC
Q 010917          113 LDKKPARLPG---FHTCVGSGGER----QTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG  180 (497)
Q Consensus       113 ~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~---~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG  180 (497)
                      ..........   ...........    .+.+.+.   ..+++++++++|+.++.+..  ++++++|.++.+|.||-|-|
T Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG  157 (372)
T PRK05868         78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG  157 (372)
T ss_pred             CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence            0000000000   00000000000    1112222   25799999999999875443  56778888999999999999


Q ss_pred             CCC
Q 010917          181 CTA  183 (497)
Q Consensus       181 ~~~  183 (497)
                      ...
T Consensus       158 ~~S  160 (372)
T PRK05868        158 LHS  160 (372)
T ss_pred             CCc
Confidence            754

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.45  E-value=1.7e-06  Score=78.54  Aligned_cols=97  Identities=21%  Similarity=0.351  Sum_probs=67.5

Q ss_pred             EEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhh------------------------------------------cc
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR------------------------------------------LF  256 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~------------------------------------------~~  256 (497)
                      +|||+|+.|+-+|..|.+.|.+ ++++++.+.+...                                          ..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999999 9999987332110                                          00


Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC--cCCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV  318 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~--~p~~  318 (497)
                      .+++.+++++..++.++++.++++|++++..+++  -.|++.+++++.||.||+|+|.  .|+.
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~  142 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRI  142 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB--
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCc
Confidence            1235577888889999999999999999987655  4688889888999999999997  5543

...

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.45  E-value=6.8e-07  Score=91.89  Aligned_cols=97  Identities=15%  Similarity=0.244  Sum_probs=72.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||++|+.+|..|++.|.   +|+|+++.+....           . .  ..++           ...+.+.+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll~-----------~-~--d~e~-----------~~~l~~~L  221 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLLP-----------G-E--DEDI-----------AHILREKL  221 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcCc-----------c-c--cHHH-----------HHHHHHHH
Confidence            4799999999999999999999886   8999998764210           0 0  0001           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEEC-CC--cEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~-~g--~~i~~d~lvlAtG~~~~  184 (497)
                      ++.||++++++++..++.+...+.+. ++  .++.+|.|++|+|..|.
T Consensus       222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence            88899999999999998766554442 33  36899999999998876

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.44  E-value=8.5e-07  Score=93.11  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...+||+||||||+|+++|..|++.|+   +|+|+|+.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence            456899999999999999999999998   8999999864

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.44  E-value=5.5e-06  Score=83.98  Aligned_cols=56  Identities=20%  Similarity=0.376  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      .+...+.+.+++.|++++.+++|++++..+++.+..+.+.+| ++.++.||+|+|..
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            455556777889999999999999997544456666777777 59999988887754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.44  E-value=6.8e-06  Score=83.57  Aligned_cols=63  Identities=29%  Similarity=0.466  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhc
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  324 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~  324 (497)
                      .+...+.+.+++.|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|.... .++...
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~  264 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPL  264 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHh
Confidence            55667777888999999999999999864 444545666654 6999999999997643 344443

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.44  E-value=2.8e-07  Score=95.14  Aligned_cols=57  Identities=23%  Similarity=0.411  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      ...+.+.+.+.++++|++|+++++|++|... +++.+.+...+|+.+++|.||.....
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence            3467888999999999999999999999864 55556778888878999999998776

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.44  E-value=4.6e-07  Score=91.54  Aligned_cols=123  Identities=19%  Similarity=0.243  Sum_probs=71.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------C---------CCCccc-----------cCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------P---------ALTKGY-----------LFP  112 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~---------~l~~~~-----------l~~  112 (497)
                      ++.+|+|||||++|+++|..|++.|+   +|+|+|+.+...-..      |         .+....           +..
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   79 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD   79 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence            35799999999999999999999998   899999986432100      0         000000           000


Q ss_pred             --CCCCCCCCC--C-CccccCCCC--------CCCCHhHHHHc-CcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEE
Q 010917          113 --LDKKPARLP--G-FHTCVGSGG--------ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI  176 (497)
Q Consensus       113 --~~~~~~~~~--~-~~~~~~~~~--------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lv  176 (497)
                        .......++  . +....+...        ...+.+.+.+. +++++.+++++.++.+..  .+++.+|+++.+|.||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV  159 (396)
T PRK08163         80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI  159 (396)
T ss_pred             CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEE
Confidence              000000000  0 000000000        00111122233 489999999999876543  5666788889999999


Q ss_pred             eccCCCCC
Q 010917          177 VATGCTAS  184 (497)
Q Consensus       177 lAtG~~~~  184 (497)
                      .|.|....
T Consensus       160 ~AdG~~S~  167 (396)
T PRK08163        160 GCDGVKSV  167 (396)
T ss_pred             ECCCcChH
Confidence            99998643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.43  E-value=4.8e-07  Score=91.69  Aligned_cols=121  Identities=17%  Similarity=0.279  Sum_probs=71.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--C------CC-C-CCCCc---ccc-----CCCC----CCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--P------YE-R-PALTK---GYL-----FPLD----KKP  117 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~--~------~~-~-~~l~~---~~l-----~~~~----~~~  117 (497)
                      .+||+||||||+|+++|..|+++|+   +|+|+|+.+..  +      +. + ..++.   ..+     .+.-    ..+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~   78 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGL---EVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP   78 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCC---EEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence            4699999999999999999999998   89999997621  0      00 0 00000   000     0000    000


Q ss_pred             -CC-----CCCC--cccc----CCCC----------CCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEec
Q 010917          118 -AR-----LPGF--HTCV----GSGG----------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  173 (497)
Q Consensus       118 -~~-----~~~~--~~~~----~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d  173 (497)
                       ..     -.+.  ..+.    ....          ...+.+.+.+.+++++.++++.+++....  .+++.+|+++.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  158 (405)
T PRK05714         79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP  158 (405)
T ss_pred             ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence             00     0000  0000    0000          00111223446899999999998875543  5677888889999


Q ss_pred             cEEeccCCCC
Q 010917          174 SLIVATGCTA  183 (497)
Q Consensus       174 ~lvlAtG~~~  183 (497)
                      .||.|.|...
T Consensus       159 ~vVgAdG~~S  168 (405)
T PRK05714        159 LVVAADGANS  168 (405)
T ss_pred             EEEEecCCCc
Confidence            9999999764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.43  E-value=6.1e-07  Score=81.21  Aligned_cols=33  Identities=30%  Similarity=0.337  Sum_probs=31.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+|+|||+|+||++||..|++.|.   +|||+||+.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~   34 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGR   34 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCC
Confidence            479999999999999999999998   899999986

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.43  E-value=8.9e-06  Score=83.98  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeccC-cCCCcchh
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGA-KPTVSPFE  322 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vv~a~G~-~p~~~~~~  322 (497)
                      ..+...+.+.+++.|++++.+++++++... ++++..+...  ++  ..+.++.||+|+|- ..|.++++
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~  199 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR  199 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence            456677778889999999999999999864 5777777653  33  36889999999984 34434443

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.41  E-value=6.3e-06  Score=80.33  Aligned_cols=93  Identities=18%  Similarity=0.267  Sum_probs=67.2

Q ss_pred             HHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          235 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       235 l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      ....|....++....+.+....-+.+.+-+.+.+++.|++++++++|.+++.. ++.+..+.+++|.++++|.||+|+|.
T Consensus       150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCc
Confidence            34445555544333332222345677888899999999999999999999864 55567899999999999999999999


Q ss_pred             cCCCcch----hhcCCccc
Q 010917          315 KPTVSPF----ERVGLNSS  329 (497)
Q Consensus       315 ~p~~~~~----~~~gl~~~  329 (497)
                      ... +++    +.+|+...
T Consensus       229 sg~-dw~~~l~~K~Gv~~~  246 (486)
T COG2509         229 SGR-DWFEMLHKKLGVKMR  246 (486)
T ss_pred             chH-HHHHHHHHhcCcccc
Confidence            876 443    34455443

>PRK06126 hypothetical protein; Provisional

Probab=98.41  E-value=1.1e-06  Score=92.66  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ....++|+||||||+|+++|..|+++|+   +|+|+|+.+.
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~   41 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG   41 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            3446899999999999999999999998   8999999864

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.40  E-value=8.1e-07  Score=89.29  Aligned_cols=122  Identities=12%  Similarity=0.190  Sum_probs=71.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCCcc---c-----cCCCC----CCCC-
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTKG---Y-----LFPLD----KKPA-  118 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--------~l~~~---~-----l~~~~----~~~~-  118 (497)
                      .+||+||||||+|+++|..|++.|+   +|+|+|+.+...+...        .++..   .     +...-    ..+. 
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~   79 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK   79 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence            4799999999999999999999998   8999998752222110        11100   0     00000    0000 


Q ss_pred             ------CCCCCcccc-----CCC--C-C-C-CCHhH----HHH-cCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccE
Q 010917          119 ------RLPGFHTCV-----GSG--G-E-R-QTPEW----YKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSL  175 (497)
Q Consensus       119 ------~~~~~~~~~-----~~~--~-~-~-~~~~~----~~~-~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~l  175 (497)
                            .......+.     ...  + . + .+...    +.. .+++++.++++++++.+.  .++++++|.++.+|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv  159 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV  159 (384)
T ss_pred             eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence                  000000000     000  0 0 0 01111    122 369999999999887544  3678889999999999


Q ss_pred             EeccCCCCC
Q 010917          176 IVATGCTAS  184 (497)
Q Consensus       176 vlAtG~~~~  184 (497)
                      |.|.|....
T Consensus       160 IgADG~~S~  168 (384)
T PRK08849        160 IGADGANSQ  168 (384)
T ss_pred             EEecCCCch
Confidence            999998643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.40  E-value=8.3e-07  Score=91.49  Aligned_cols=98  Identities=18%  Similarity=0.316  Sum_probs=74.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...   |.+        .   ..+           .....+.+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~---~~~-----------~~~l~~~l  223 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL---PGE--------D---KEI-----------SKLAERAL  223 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC---CcC--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999876531   000        0   000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCE--EEECCC---cEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQT--LITNSG---KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~g---~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++++++|.+++.+...  +.+.++   +++.+|.||+|+|..|..
T Consensus       224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence            8899999999999999876543  444455   679999999999998763

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.40  E-value=5.2e-07  Score=93.23  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .++||+|||||+||++||..+++.|.   +|+|+|+..
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence            35899999999999999999999998   899999874

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.40  E-value=1e-06  Score=89.61  Aligned_cols=54  Identities=22%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             cCCCEEecCCCCCCCCcEEEeccccc-cCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          329 SVGGIQVDGQFRTRMPGIFAIGDVAA-FPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       329 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      ..|||.||.+.||+.|++||+|.|+. .... .++.. -.+...+...|+.|++++.
T Consensus       330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG-~nrl~-gnsl~~~lvfGr~Ag~~a~  384 (433)
T PRK06175        330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHG-ANRLA-SNSLLEGLVFSKRGAEKIN  384 (433)
T ss_pred             ecCCEEECCCccccCCCeEecccccccCCCc-cccch-hHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999974 2111 01111 2245567778888888775

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.39  E-value=7.5e-07  Score=89.53  Aligned_cols=120  Identities=17%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC--C--------------CCC----Cc-c-------ccC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--R--------------PAL----TK-G-------YLF  111 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~--~--------------~~l----~~-~-------~l~  111 (497)
                      .++|+||||||+|+++|..|++.|+   +|+|||+.+.....  +              -.+    .. +       ...
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~---~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~   78 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGL---DVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD   78 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence            4799999999999999999999998   89999998211000  0              000    00 0       000


Q ss_pred             CCCC--CCCCCCCCc-----c-ccCCCCCCCCHhHHHHc-CcEEEeCCcEEEEecCCC--EEEEC-CCcEEEeccEEecc
Q 010917          112 PLDK--KPARLPGFH-----T-CVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITN-SGKLLKYGSLIVAT  179 (497)
Q Consensus       112 ~~~~--~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~-~g~~i~~d~lvlAt  179 (497)
                      ....  ...+.....     . .........+.+.+.+. +++++.+++|+.++.+..  +++++ +|+++.+|.||-|-
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD  158 (387)
T COG0654          79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD  158 (387)
T ss_pred             cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence            0000  000000000     0 00000001112223334 489999999999987653  57777 89999999999999


Q ss_pred             CCC
Q 010917          180 GCT  182 (497)
Q Consensus       180 G~~  182 (497)
                      |..
T Consensus       159 G~~  161 (387)
T COG0654         159 GAN  161 (387)
T ss_pred             CCc
Confidence            965

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.39  E-value=4.4e-06  Score=85.77  Aligned_cols=66  Identities=14%  Similarity=0.258  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHH----CC--cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCc
Q 010917          259 SLAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       259 ~~~~~~~~~l~~----~G--V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~  327 (497)
                      .+...+.+.+++    .|  +++++++.|++++..+ +....|.+.+| ++.+|.||+|+|.... .+++.+|+.
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~  283 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG  283 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence            566777777777    77  8899999999998653 33445777777 5999999999997653 556666653

>PRK07588 hypothetical protein; Provisional

Probab=98.39  E-value=1.8e-06  Score=86.98  Aligned_cols=121  Identities=18%  Similarity=0.235  Sum_probs=70.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C-----C---------CCCcccc-----C-------CC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R-----P---------ALTKGYL-----F-------PL  113 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~-----~---------~l~~~~l-----~-------~~  113 (497)
                      .||+||||||+|+++|..|++.|+   +|+|+|+.+...-. +     +         .+...+.     .       ..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~   77 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT   77 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence            389999999999999999999998   89999998643100 0     0         0000000     0       00


Q ss_pred             CCCCCCCC--CCccccCCCCCCC----CHhHH---HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCC
Q 010917          114 DKKPARLP--GFHTCVGSGGERQ----TPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT  182 (497)
Q Consensus       114 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~---~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~  182 (497)
                      ......+.  .+....+......    +...+   ...+++++.+++|++++.+..  ++++++|+.+.+|.||-|.|..
T Consensus        78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~  157 (391)
T PRK07588         78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH  157 (391)
T ss_pred             CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            00000000  0000000000000    11111   123689999999999986554  4677888889999999999975


Q ss_pred             CC
Q 010917          183 AS  184 (497)
Q Consensus       183 ~~  184 (497)
                      ..
T Consensus       158 S~  159 (391)
T PRK07588        158 SH  159 (391)
T ss_pred             cc
Confidence            43

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.39  E-value=9.1e-07  Score=88.34  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=68.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-----CCCCCCC-------Cccc-cC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-----KPARLPG-------FHTC-VG  128 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~-------~~~~-~~  128 (497)
                      ||+||||||||+++|..|++... +.+|+|||+++..++...... .+......     ....+.+       .... ..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW-~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~   78 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTW-CFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID   78 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCccc-ccccccccchHHHHheecCceEEEeCCCceEEcc
Confidence            79999999999999999944332 449999999876633221110 00000000     0000000       0000 00


Q ss_pred             --------CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917          129 --------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       129 --------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                              ..+...+.+.+...+ ..+.++.|..++....  .+++++|.++.++.||-|+|...
T Consensus        79 ~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   79 YPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             cceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence                    000001111222224 4556789999987765  67889999999999999999554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.39  E-value=1.2e-06  Score=90.44  Aligned_cols=98  Identities=20%  Similarity=0.361  Sum_probs=72.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||++|+.+|..|++.|.   +|+|+++.+...   +..           ...+           .....+.+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il---~~~-----------~~~~-----------~~~l~~~l  231 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL---PTE-----------DAEL-----------SKEVARLL  231 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC---CcC-----------CHHH-----------HHHHHHHH
Confidence            4799999999999999999999886   899999876421   000           0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEec--CCCE--EEECCC--cEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~--~~~~--v~~~~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||++++++++..++.  +...  +.+.+|  +++.+|.||+|+|..|..
T Consensus       232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence            888999999999999974  3332  233455  368999999999998763

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.37  E-value=1.1e-06  Score=88.88  Aligned_cols=41  Identities=17%  Similarity=0.299  Sum_probs=34.2

Q ss_pred             CcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCC
Q 010917          143 GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       143 ~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      +++++.+++|+.++.+.  ..+++++|+.+.+|.||.|.|...
T Consensus       126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS  168 (405)
T ss_pred             CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence            69999999999886544  367778888999999999999764

>PRK14694 putative mercuric reductase; Provisional

Probab=98.37  E-value=1.5e-06  Score=89.68  Aligned_cols=96  Identities=23%  Similarity=0.367  Sum_probs=71.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+..|..|++.|.   +|+++++...++.    .        .   ..+           ...+.+.+
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l~~----~--------~---~~~-----------~~~l~~~l  228 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVLSQ----E--------D---PAV-----------GEAIEAAF  228 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCCCC----C--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   8999986432110    0        0   000           12346677


Q ss_pred             HHcCcEEEeCCcEEEEecCCCE--EEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++.++.+..++.+...  +.+++ .++.+|.||+|+|..|+.
T Consensus       229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        229 RREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT  275 (468)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence            8899999999999999876553  33334 469999999999998864

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.37  E-value=3e-06  Score=87.00  Aligned_cols=103  Identities=22%  Similarity=0.428  Sum_probs=73.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcch------hhcc----C--HHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF----T--PSLAQRYEQLYQQNGVKFVKGASIK  282 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~------~~~~----~--~~~~~~~~~~l~~~GV~i~~~~~v~  282 (497)
                      ++|+|||+|+.|+.+|..|++++  .+|+|+++.+.+.      +...    .  .++.....+.+++.||+++.++.|.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            47999999999999999999876  4899999887531      1111    1  1223334466788999999999999


Q ss_pred             EEEeCCCCcEEEEEe-CCCcEEE--cCEEEEeccCcCCCcch
Q 010917          283 NLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       283 ~i~~~~~~~v~~v~~-~~g~~i~--~D~vv~a~G~~p~~~~~  321 (497)
                      +++.. +..+ .+.. .+++++.  +|.+|+|+|.+|+...+
T Consensus        81 ~id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i  120 (444)
T PRK09564         81 KVDAK-NKTI-TVKNLKTGSIFNDTYDKLMIATGARPIIPPI  120 (444)
T ss_pred             EEECC-CCEE-EEEECCCCCEEEecCCEEEECCCCCCCCCCC
Confidence            99854 2222 2322 2356666  99999999999875433

>TIGR00275 flavoprotein, HI0933 family

Probab=98.37  E-value=5.9e-07  Score=90.46  Aligned_cols=47  Identities=30%  Similarity=0.355  Sum_probs=35.4

Q ss_pred             HhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917          136 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       136 ~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      .+.+++.+++++.++.|+.+.....  .+.+ ++..+.+|+||+|||...
T Consensus       112 ~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       112 LNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence            3445667999999999999876544  3444 456789999999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.37  E-value=1.4e-06  Score=88.97  Aligned_cols=95  Identities=15%  Similarity=0.263  Sum_probs=74.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+.           .++           .....+.+
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~---~~~d-----------~~~-----------~~~l~~~l  199 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKIN---KLMD-----------ADM-----------NQPILDEL  199 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccc---hhcC-----------HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999876421   0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.||++++++++.+++.  ..+++++|+.+.+|.+++|+|..|.
T Consensus       200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence            889999999999999874  4677788888999999999998876

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.36  E-value=4.4e-06  Score=87.18  Aligned_cols=101  Identities=26%  Similarity=0.378  Sum_probs=80.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Ccc-----------hhhccCHHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  282 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~  282 (497)
                      ..+|+|||||+.|+.+|..+++.|.+|+++...  ..+           .+....+++.+.+.+.+++.|++++.++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            357999999999999999999999999999753  111           0111345778888899999999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                      +++..+ + ...+.+.+|+++.+|.||+|+|.+|..
T Consensus       291 ~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPAA-G-LIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            998643 2 235677888899999999999998753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.36  E-value=5e-06  Score=86.64  Aligned_cols=101  Identities=25%  Similarity=0.361  Sum_probs=79.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Ccch-----------hhccCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      ...+|+|||||+.|+.+|..+++.|.+|+++...  ..+.           +....+++...+.+.+++.|++++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            3468999999999999999999999999998642  1111           01134567778888889999999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      .+++..+ +. ..+.+++|+.+.+|.+|+|+|..|.
T Consensus       291 ~~I~~~~-~~-~~v~~~~g~~i~~d~lIlAtGa~~~  324 (515)
T TIGR03140       291 KKIETED-GL-IVVTLESGEVLKAKSVIVATGARWR  324 (515)
T ss_pred             EEEEecC-Ce-EEEEECCCCEEEeCEEEECCCCCcC
Confidence            9997543 22 3567788889999999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.36  E-value=1.4e-06  Score=89.27  Aligned_cols=98  Identities=17%  Similarity=0.252  Sum_probs=74.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..+++.|.   +|+++++.+....   .+           ..++           ...+.+.+
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~-----------d~~~-----------~~~l~~~l  217 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELILR---GF-----------DDDM-----------RALLARNM  217 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCCc---cc-----------CHHH-----------HHHHHHHH
Confidence            4789999999999999999999886   8999998764210   00           0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++.++++..++...  ..+.+.+++++.+|.||+|+|..|..
T Consensus       218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence            88899999999999987533  35666678889999999999988763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.36  E-value=7.6e-07  Score=89.46  Aligned_cols=119  Identities=19%  Similarity=0.273  Sum_probs=69.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-CCCCcc---c-----cCCC----CCCCCCC--
Q 010917           62 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYE-----R-PALTKG---Y-----LFPL----DKKPARL--  120 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~~~~~-----~-~~l~~~---~-----l~~~----~~~~~~~--  120 (497)
                      ||+||||||||+++|..|+++| +   +|+|+|+.+.....     + ..+...   .     +...    ......+  
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   77 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV   77 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence            6999999999999999999999 8   89999998653221     0 000000   0     0000    0000000  


Q ss_pred             --C---CCcccc----CCC---C-------CCCCHhHHHH-cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEec
Q 010917          121 --P---GFHTCV----GSG---G-------ERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA  178 (497)
Q Consensus       121 --~---~~~~~~----~~~---~-------~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlA  178 (497)
                        .   +.....    +..   +       ...+.+.+.+ .|++++.+++|+++..+..  ++++++|.++.+|.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence              0   000000    000   0       0011122233 3899999999999865443  567778888999999999


Q ss_pred             cCCCC
Q 010917          179 TGCTA  183 (497)
Q Consensus       179 tG~~~  183 (497)
                      .|...
T Consensus       158 dG~~S  162 (382)
T TIGR01984       158 DGANS  162 (382)
T ss_pred             cCCCh
Confidence            99764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06116 glutathione reductase; Validated

Probab=98.36  E-value=1.5e-06  Score=89.15  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=75.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..|++.|.   +|+++++.+...   +..        .   ..+           ...+.+.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~--------~---~~~-----------~~~l~~~L  218 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPL---RGF--------D---PDI-----------RETLVEEM  218 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCc---ccc--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999986   899999875421   000        0   000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++++++|.+++.+.   ..+.+.+|+++.+|.+|+|+|..|..
T Consensus       219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~  267 (450)
T PRK06116        219 EKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT  267 (450)
T ss_pred             HHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence            88999999999999997642   34667788889999999999988763

>PRK06185 hypothetical protein; Provisional

Probab=98.36  E-value=1.2e-06  Score=88.91  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...+||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence            356899999999999999999999998   8999999753

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.35  E-value=2.6e-05  Score=79.73  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc---------------------------------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------------------  255 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~---------------------------------------  255 (497)
                      ..++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...+                                       
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            35889999999999999999999999999999864321110                                       


Q ss_pred             --------------------cCHHHHHHHHHHHHHCCcE--EEcCCeEEEEEeCCCCcEEEEEeCC--Cc--EEEcCEEE
Q 010917          256 --------------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIV  309 (497)
Q Consensus       256 --------------------~~~~~~~~~~~~l~~~GV~--i~~~~~v~~i~~~~~~~v~~v~~~~--g~--~i~~D~vv  309 (497)
                                          -..++.+++++..+..|+.  +.++++|++++..++..  .|.+.+  +.  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w--~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKW--RVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeE--EEEEEcCCCceEEEEcCEEE
Confidence                                0135667788888888988  88999999998653322  344432  22  46799999


Q ss_pred             Eecc--CcCCCc
Q 010917          310 IGIG--AKPTVS  319 (497)
Q Consensus       310 ~a~G--~~p~~~  319 (497)
                      +|+|  ..|+..
T Consensus       167 vAtG~~~~P~~P  178 (461)
T PLN02172        167 VCNGHYTEPNVA  178 (461)
T ss_pred             EeccCCCCCcCC
Confidence            9999  466544

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.34  E-value=1.9e-06  Score=87.86  Aligned_cols=39  Identities=21%  Similarity=0.463  Sum_probs=34.8

Q ss_pred             cCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           56 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        56 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +..+++||+||||||||++||..|+++|+   +|+|+|+...
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~   73 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD   73 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence            35567899999999999999999999998   8999999753

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.34  E-value=1.1e-05  Score=83.14  Aligned_cols=54  Identities=26%  Similarity=0.420  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      ..+...+.+.+++.|++++.++.|.+++.+  +. ..|.+.+| ++.+|.||+|+|.-
T Consensus       183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~-~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       183 GLLVRGLRRVALELGVEIHENTPMTGLEEG--QP-AVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEeeC--Cc-eEEEeCCc-EEECCEEEEccccc
Confidence            456677778889999999999999999742  22 34666666 59999999999854

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.34  E-value=1.8e-06  Score=87.03  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=76.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      ..+++++|||||+-|+..|..+++.|.   +|||+|+.+..           +...++..              ...+.+
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~i-----------Lp~~D~ei--------------~~~~~~  222 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRI-----------LPGEDPEI--------------SKELTK  222 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCC-----------CCcCCHHH--------------HHHHHH
Confidence            345799999999999999999999997   89999998763           11111111              133556


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCC--EEEECCCc--EEEeccEEeccCCCCC
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTAS  184 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~--~i~~d~lvlAtG~~~~  184 (497)
                      .+++.++++++++.+..+...+.  .+.++++.  .+.+|++++|+|-.|+
T Consensus       223 ~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn  273 (454)
T COG1249         223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN  273 (454)
T ss_pred             HHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence            67777899999999998876654  56677766  6899999999998776

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.34  E-value=1.9e-06  Score=86.01  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +||+|||||++|+++|++|+++|+   +|+|+|++.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~---~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGL---SVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            489999999999999999999987   899999975

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.33  E-value=4.7e-06  Score=81.75  Aligned_cols=95  Identities=24%  Similarity=0.419  Sum_probs=70.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccchh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQ-------------------------------------------  253 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~~~-------------------------------------------  253 (497)
                      .|+|||||..|+|.|..+++.|.+|.++... +.+..                                           
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            4899999999999999999999999999433 11100                                           


Q ss_pred             ---------hccCH-HHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          254 ---------RLFTP-SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       254 ---------~~~~~-~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                               ...|. .+...+++.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|+|.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                     01222 345667777777 689987 457999875 478999999999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.33  E-value=1.1e-06  Score=88.77  Aligned_cols=43  Identities=16%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          142 KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      .|++++.+++|+.+.....  .++++++..+.+|.||.|.|....
T Consensus       126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA  170 (395)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence            3799999999998865443  567778888999999999997643

>PRK11445 putative oxidoreductase; Provisional

Probab=98.33  E-value=2.8e-06  Score=84.20  Aligned_cols=120  Identities=18%  Similarity=0.210  Sum_probs=67.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC---CCcc---cc-----CCCCCCCC-------
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA---LTKG---YL-----FPLDKKPA-------  118 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~---~~~~~~---l~~~---~l-----~~~~~~~~-------  118 (497)
                      ++||+||||||||+++|..|++. +   +|+|+|+.+..   ++..+.   ++..   .+     ........       
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~   76 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAV   76 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecccccee
Confidence            36999999999999999999998 7   89999998643   122110   1100   00     00000000       


Q ss_pred             ---CCCC-CccccCCCCCC----CCHhHH---HHcCcEEEeCCcEEEEecCCC--EEEE-CCCc--EEEeccEEeccCCC
Q 010917          119 ---RLPG-FHTCVGSGGER----QTPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLIT-NSGK--LLKYGSLIVATGCT  182 (497)
Q Consensus       119 ---~~~~-~~~~~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~i~~~~~--~v~~-~~g~--~i~~d~lvlAtG~~  182 (497)
                         ++.. .....+.....    .+.+++   ...+++++.++.+..+.....  .+.+ ++|+  ++.+|.||.|+|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~  156 (351)
T PRK11445         77 KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN  156 (351)
T ss_pred             eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence               0000 00000000000    111222   235899999989988865443  3443 4554  68999999999986


Q ss_pred             C
Q 010917          183 A  183 (497)
Q Consensus       183 ~  183 (497)
                      .
T Consensus       157 S  157 (351)
T PRK11445        157 S  157 (351)
T ss_pred             c
Confidence            4

>PRK06847 hypothetical protein; Provisional

Probab=98.33  E-value=7.7e-06  Score=81.95  Aligned_cols=101  Identities=26%  Similarity=0.348  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh------------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  253 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------  253 (497)
                      .++|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                          
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            56899999999999999999999999999987642100                                          


Q ss_pred             ---hc----------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          254 ---RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       254 ---~~----------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                         ..                ...++.+.+.+.+++.|++++.++++++++..++ . ..+.+.+|+++.+|.||.|.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~ad~vI~AdG~  161 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-G-VTVTFSDGTTGRYDLVVGADGL  161 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-E-EEEEEcCCCEEEcCEEEECcCC
Confidence               00                0023455666777788999999999999986433 3 3577888999999999999998


Q ss_pred             cCCC
Q 010917          315 KPTV  318 (497)
Q Consensus       315 ~p~~  318 (497)
                      .+..
T Consensus       162 ~s~~  165 (375)
T PRK06847        162 YSKV  165 (375)
T ss_pred             Ccch
Confidence            7654

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.33  E-value=2.2e-06  Score=90.22  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +.+.+|+||||||+|+++|..|++.|+   +|+|||+.+.
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT   57 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            356799999999999999999999998   8999999874

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.33  E-value=1.6e-06  Score=87.23  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=70.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-CCCCc---cc-----cCCCC-C-CCCCCCCCc
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---GY-----LFPLD-K-KPARLPGFH  124 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~------~-~~l~~---~~-----l~~~~-~-~~~~~~~~~  124 (497)
                      ||+||||||||+++|..|+++|+   +|+|+|+.+.....      + ..+..   ..     +.... . ......+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   77 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH   77 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence            69999999999999999999998   89999999753111      0 00000   00     00000 0 000000000


Q ss_pred             ----------ccc-----C---------CCCCCCCHhHHHHcC-cEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEe
Q 010917          125 ----------TCV-----G---------SGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV  177 (497)
Q Consensus       125 ----------~~~-----~---------~~~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvl  177 (497)
                                ...     .         ......+.+.+.+.+ ++++.+++|+.++....  .+.+++|+.+.+|.||.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence                      000     0         000001112234455 99999999999876554  45667888899999999


Q ss_pred             ccCCCC
Q 010917          178 ATGCTA  183 (497)
Q Consensus       178 AtG~~~  183 (497)
                      |.|...
T Consensus       158 adG~~S  163 (385)
T TIGR01988       158 ADGANS  163 (385)
T ss_pred             eCCCCC
Confidence            999764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.32  E-value=1.8e-06  Score=88.94  Aligned_cols=98  Identities=19%  Similarity=0.315  Sum_probs=74.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+        +   .++           ...+.+.+
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~l~~~l  226 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL---SFL--------D---DEI-----------SDALSYHL  226 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---CcC--------C---HHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999876421   000        0   000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++.+++++.++....  .+.+.+++++.+|.+++|+|.+|..
T Consensus       227 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        227 RDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT  274 (461)
T ss_pred             HHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence            888999999999999875433  4556778889999999999988763

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.32  E-value=2.2e-06  Score=85.94  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ++||+|||||++|+++|++|+++|+   +|+|+|++.
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~---~V~lie~~~   36 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL---RVLGLDRFM   36 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC---eEEEEeccc
Confidence            5799999999999999999999997   899999875

>PRK07846 mycothione reductase; Reviewed

Probab=98.32  E-value=2.1e-06  Score=87.93  Aligned_cols=97  Identities=26%  Similarity=0.357  Sum_probs=71.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+        .   .++           ...+.+ +
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll---~~~--------d---~~~-----------~~~l~~-l  216 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL---RHL--------D---DDI-----------SERFTE-L  216 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc--------C---HHH-----------HHHHHH-H
Confidence            4799999999999999999999886   899999876431   000        0   000           011122 3


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      .+.++++++++++++++....  .+.+.+++++++|.|++|+|..|..
T Consensus       217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence            356899999999999986543  4566778889999999999988763

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.32  E-value=5.8e-07  Score=88.00  Aligned_cols=39  Identities=23%  Similarity=0.446  Sum_probs=31.1

Q ss_pred             cCcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCC
Q 010917          142 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC  181 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~  181 (497)
                      .+++++. .+|+.+..++.   -|.+.+|..+.+|.+|+|||.
T Consensus       109 ~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen  109 PNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            4789875 68999987665   467889999999999999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06753 hypothetical protein; Provisional

Probab=98.31  E-value=2.7e-06  Score=85.22  Aligned_cols=116  Identities=20%  Similarity=0.172  Sum_probs=68.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCccc------------cCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGY------------LFPLD  114 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~~------------l~~~~  114 (497)
                      +|+||||||||+++|..|+++|+   +|+|+|+.+.......               .+....            .....
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g   78 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG   78 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence            79999999999999999999998   8999999875321100               000000            00000


Q ss_pred             CCCCCCCCCccccCCCCCC----CCHhHHHH--cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917          115 KKPARLPGFHTCVGSGGER----QTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      .....++ +  ..+.....    .+.+.+.+  .+.+++.+++|++++.++.  .+++++|+++.+|.||-|.|...
T Consensus        79 ~~~~~~~-~--~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S  152 (373)
T PRK06753         79 TLLNKVK-L--KSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS  152 (373)
T ss_pred             CEEeecc-c--ccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence            0000000 0  00000000    11222222  2457888999999976554  56778888899999999999653

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.31  E-value=1.8e-06  Score=78.26  Aligned_cols=105  Identities=21%  Similarity=0.322  Sum_probs=73.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--ccCH-----------HHH--H--HHHHHHHHCCcEEEcCCe
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFTP-----------SLA--Q--RYEQLYQQNGVKFVKGAS  280 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--~~~~-----------~~~--~--~~~~~l~~~GV~i~~~~~  280 (497)
                      +|+|||||+.|+.+|..|++.+.+++++++.+.....  .+..           ...  .  .+.+.+...+++++.+++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            5899999999999999999999999999776532110  0000           011  1  334445778999999999


Q ss_pred             EEEEEeCCCC------cEEEEEeCCCcEEEcCEEEEeccCcCCCcchh
Q 010917          281 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  322 (497)
Q Consensus       281 v~~i~~~~~~------~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~  322 (497)
                      +.+++.....      .+......++.++.+|.+|+|+|..|+...+.
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~  128 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP  128 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecC
Confidence            9999865331      11122445667899999999999988755444

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06370 mercuric reductase; Validated

Probab=98.31  E-value=2.6e-06  Score=87.86  Aligned_cols=98  Identities=15%  Similarity=0.241  Sum_probs=72.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...-   ..        .   .++           .....+.+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------~---~~~-----------~~~l~~~l  222 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLLP---RE--------D---EDV-----------AAAVREIL  222 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCCc---cc--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   8999998765310   00        0   000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEE---CCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++++++|..++..+.  .+.+   .++.++.+|.||+|+|..|..
T Consensus       223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence            888999999999999986543  3333   234579999999999998763

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.31  E-value=2.8e-06  Score=84.54  Aligned_cols=117  Identities=18%  Similarity=0.209  Sum_probs=65.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCC------CCCCccccCCC-CCCCCCCCCCcccc-----
Q 010917           62 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYER------PALTKGYLFPL-DKKPARLPGFHTCV-----  127 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~~~~~------~~l~~~~l~~~-~~~~~~~~~~~~~~-----  127 (497)
                      ||+|||||+||+++|..|++.  |+   +|+|+|+.+...-++      ..+........ .....+++......     
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~---~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~   77 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDF---RIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRR   77 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC---eEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhh
Confidence            699999999999999999987  66   899999986332111      11110000000 00000111000000     


Q ss_pred             --CCCCC-C---CCHhH-HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCC
Q 010917          128 --GSGGE-R---QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       128 --~~~~~-~---~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                        +..+. .   .+.+. +++.+..++++++|..++.+  .+++.+|+++.+|.||-|.|..+
T Consensus        78 ~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        78 KLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             hcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence              00000 0   01111 22234446778899988654  47778899999999999999764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.31  E-value=5.2e-07  Score=91.74  Aligned_cols=117  Identities=22%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-----CCCc---------c----ccCCCCC---CCC-C
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-----ALTK---------G----YLFPLDK---KPA-R  119 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-----~l~~---------~----~l~~~~~---~~~-~  119 (497)
                      ||||||||+||++||..+++.|.   +|+|||+.+.+.....     ....         +    +......   ... .
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence            79999999999999999999998   8999999986532100     0000         0    0000000   000 0


Q ss_pred             CCCC---ccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCE---EEECC---CcEEEeccEEeccCC
Q 010917          120 LPGF---HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNS---GKLLKYGSLIVATGC  181 (497)
Q Consensus       120 ~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---g~~i~~d~lvlAtG~  181 (497)
                      ..+.   ...........+.+++.+.|+++++++.+..+..++.+   |.+.+   ..++.++.+|-|||-
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0000   00011111234556667789999999999998877643   34433   457899999999994

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.31  E-value=2.3e-06  Score=86.12  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=30.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      +||+||||||||++||+.|++.|+   +|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence            589999999999999999999998   89999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.30  E-value=2.4e-06  Score=87.54  Aligned_cols=98  Identities=18%  Similarity=0.218  Sum_probs=74.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..|++.|.   +|+|+++.+...   +.+.           ..+           .....+.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il---~~~d-----------~~~-----------~~~~~~~l  217 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL---RSFD-----------SMI-----------SETITEEY  217 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC---cccC-----------HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999875421   0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCC---CEEEECCC-cEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g-~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||++++++.++.++.+.   ..+.++++ +.+.+|.+++|+|..|..
T Consensus       218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence            88899999999999987542   24666677 579999999999988763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.29  E-value=2.3e-06  Score=90.30  Aligned_cols=37  Identities=30%  Similarity=0.307  Sum_probs=32.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..||||||||.||++||.++++.|. ..+|+|+||...
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~   39 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP   39 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence            4799999999999999999998863 348999999863

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.28  E-value=2.6e-06  Score=87.79  Aligned_cols=98  Identities=23%  Similarity=0.321  Sum_probs=72.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   |..        .   .++           ...+.+.+
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d---~~~-----------~~~l~~~l  223 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL---PNE--------D---AEV-----------SKEIAKQY  223 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC---Ccc--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999765320   000        0   000           12345677


Q ss_pred             HHcCcEEEeCCcEEEEecCCCE--EEEC--CC--cEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQT--LITN--SG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~--~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++++++|..++.+...  +.+.  +|  .++++|.||+|+|..|..
T Consensus       224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~  275 (466)
T PRK07818        224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV  275 (466)
T ss_pred             HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence            8899999999999999765543  3333  55  369999999999988763

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.28  E-value=5.9e-06  Score=84.05  Aligned_cols=100  Identities=23%  Similarity=0.363  Sum_probs=72.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccC----------HHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT----------PSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~----------~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      ..++|||||||+.|+.+|..|...+.+||+|++.+.+....+-          ..+...+.+.++..+++++.+ +|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence            4578999999999999999997777899999988764322111          122333455566778988765 78999


Q ss_pred             EeCCCCcEEEEEe----------CCCcEEEcCEEEEeccCcCCCc
Q 010917          285 EAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       285 ~~~~~~~v~~v~~----------~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      +.. +..   +.+          .+|+++++|.+|+|+|.+|+..
T Consensus        88 d~~-~~~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~  128 (424)
T PTZ00318         88 DFE-EKR---VKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF  128 (424)
T ss_pred             EcC-CCE---EEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence            854 222   333          4567899999999999997643

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.28  E-value=4.1e-06  Score=83.55  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=72.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcchhhcc----------CHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +|+|||||+.|+.+|..+.+.   +.+|+++++.+.......          ..++...+.+.+++.||+++.+ +|+++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999999643   578999998765321100          1223334566677889999876 78999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      +..+  +  .|.+.+|+++.+|.+|+|+|.+|+..
T Consensus        80 d~~~--~--~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DPDR--R--KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             eccc--C--EEEECCCCcccccEEEEccCCCCCCC
Confidence            8542  2  47788898899999999999998754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR02053 MerA mercuric reductase

Probab=98.27  E-value=2.8e-06  Score=87.54  Aligned_cols=98  Identities=19%  Similarity=0.341  Sum_probs=72.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +..        .   ..+           .....+.+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~l~~~l  217 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL---PRE--------E---PEI-----------SAAVEEAL  217 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC---Ccc--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999876421   000        0   000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEEC---CCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~---~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++++++|..++.++.  .+.+.   +++++.+|.+|+|+|..|..
T Consensus       218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT  268 (463)
T ss_pred             HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence            888999999999999876543  34432   23579999999999988764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06996 hypothetical protein; Provisional

Probab=98.27  E-value=2.2e-06  Score=86.53  Aligned_cols=41  Identities=15%  Similarity=0.196  Sum_probs=34.4

Q ss_pred             cCCCCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCC
Q 010917           56 FANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA   96 (497)
Q Consensus        56 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~   96 (497)
                      |.++.+||+||||||+|+++|..|++.|. +..+|+|+|+.+
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            45667899999999999999999999872 123799999975

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.26  E-value=3.4e-06  Score=86.86  Aligned_cols=98  Identities=15%  Similarity=0.295  Sum_probs=74.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+..|..|++.|.   +|+++++.+...-           ....   ..           .....+.+
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~l~-----------~~d~---~~-----------~~~l~~~L  228 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRVLP-----------GEDA---DA-----------AEVLEEVF  228 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcCCC-----------CCCH---HH-----------HHHHHHHH
Confidence            4689999999999999999999987   8999998754210           0000   00           12345677


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++.++++.+++....  .+.+.+|+++.+|.+++|+|..|..
T Consensus       229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence            889999999999999864433  4566778889999999999988764

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.25  E-value=5.8e-06  Score=85.96  Aligned_cols=36  Identities=33%  Similarity=0.402  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...||||||+|.||++||..+++.|.   +|+||||.+.
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga---~VivlEK~~~   95 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGM---NPVILEKMPV   95 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence            46899999999999999999999997   8999999874

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.25  E-value=2.5e-07  Score=91.76  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      +||+||||||||+++|..|+++|+   +|+|||+.+..
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence            589999999999999999999998   89999998753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.25  E-value=2.9e-05  Score=80.09  Aligned_cols=68  Identities=22%  Similarity=0.463  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeccCcCCCcchhhcCCc
Q 010917          258 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       258 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~  327 (497)
                      ..+...+.+.+++.| +++++++.|++++..+++.+ .+.   +.+|+  ++.++.||+|.|.... .+++.+|+.
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~  256 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP  256 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence            356677777788876 99999999999987555533 233   23453  6999999999998754 566666654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.25  E-value=5.2e-06  Score=90.67  Aligned_cols=99  Identities=19%  Similarity=0.439  Sum_probs=74.5

Q ss_pred             EEEEcCCHHHHHHHHHHHhCC---CcEEEEecCCcch------hhccC-----HHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          219 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL------QRLFT-----PSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       219 vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~~~------~~~~~-----~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      |||||+|+.|+.+|..|.+++   .+|||+++.+.+.      +..+.     +++.....+.+++.||+++.++.|++|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999988754   5899999887642      11111     112222356678899999999999999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                      +..  .+  .|.+.+|+++++|.+|+|||..|+...+
T Consensus        81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p~i  113 (785)
T TIGR02374        81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFILPI  113 (785)
T ss_pred             ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCCCC
Confidence            853  22  4677889899999999999999875433

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.24  E-value=3.7e-06  Score=86.90  Aligned_cols=98  Identities=14%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +..        .   ..+           .....+.+
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~~~~~l  234 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFL---AAA--------D---EQV-----------AKEAAKAF  234 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccC---CcC--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999886   899999876421   000        0   000           12335667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCE--EEECC--C--cEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQT--LITNS--G--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~--g--~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++++++|.+++.+...  +.+.+  |  ..+++|.|++|+|..|..
T Consensus       235 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~  286 (475)
T PRK06327        235 TKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT  286 (475)
T ss_pred             HHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence            7889999999999999865443  34333  3  468999999999998763

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.24  E-value=2.7e-05  Score=78.85  Aligned_cols=61  Identities=18%  Similarity=0.318  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..++.+.+.+.++..|.++++++.|++|..++++++..|++.+|+++.|+.||....+.|.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            4467888888889999999999999999876567778899999999999999998888776

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.23  E-value=3e-06  Score=86.59  Aligned_cols=41  Identities=20%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             CcEEEeCCcEEEEec---------CCCEEEECCCcEEEeccEEeccCCCC
Q 010917          143 GIEMIYQDPVTSIDI---------EKQTLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       143 ~v~~~~~~~v~~i~~---------~~~~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      +++++.+++|+.++.         +..++++.+|+++++|.||-|-|...
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S  183 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS  183 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence            489999999999863         22367788999999999999999864

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.23  E-value=8.1e-06  Score=82.96  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=67.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC---------CCcccc-----CCC--------
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA---------LTKGYL-----FPL--------  113 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~---------l~~~~l-----~~~--------  113 (497)
                      +|+|||||+|||++|..|++.|+  .+|+|+|+.+...-..      |.         +...+.     ...        
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~--~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   79 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSH--LNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFE   79 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCC--CCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEE
Confidence            79999999999999999999873  1799999986532100      00         000000     000        


Q ss_pred             --CCCCCCCCCCccccCCCC--CC--CCHhHH-HHc-CcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917          114 --DKKPARLPGFHTCVGSGG--ER--QTPEWY-KEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       114 --~~~~~~~~~~~~~~~~~~--~~--~~~~~~-~~~-~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                        ......+.+.....+...  ..  .+.+.+ +.. +..++++++|++++....  ++++++|.++.+|.||.|.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence              000000000000000000  00  011222 221 456788999999876443  56778888899999999999764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.23  E-value=5e-06  Score=83.82  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .||+||||||||++||..|++.|+   +|+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence            489999999999999999999998   8999999753

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.23  E-value=3.4e-06  Score=85.55  Aligned_cols=98  Identities=17%  Similarity=0.318  Sum_probs=78.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||+|+.|+.+|..|+++|+   +|+++|..+...-.        +..     ..+           ...+.+.+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~--------~~~-----~~~-----------~~~~~~~l  188 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ--------LLD-----PEV-----------AEELAELL  188 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh--------hhh-----HHH-----------HHHHHHHH
Confidence            5899999999999999999999998   89999998764211        000     001           13456778


Q ss_pred             HHcCcEEEeCCcEEEEecCCCE-----EEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~-----v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.||+++++..+..++...+.     +...++..+++|.+++++|.+|.
T Consensus       189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            8999999999999999987653     56778888999999999999985

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=4.8e-06  Score=85.78  Aligned_cols=97  Identities=15%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..+++.|.   +|+|+++.+...   +.+        .   ..+           .....+.+
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il---~~~--------d---~~~-----------~~~l~~~l  225 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC---PGT--------D---TET-----------AKTLQKAL  225 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC---CCC--------C---HHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999865421   000        0   000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEEC---C--CcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITN---S--GKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~---~--g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.||++++++++.++.....  .+.+.   +  ++.+++|.|++|+|..|.
T Consensus       226 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn  277 (466)
T PRK06115        226 TKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY  277 (466)
T ss_pred             HhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence            888999999999999976433  23332   2  357999999999998876

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.22  E-value=2.2e-05  Score=80.82  Aligned_cols=68  Identities=24%  Similarity=0.417  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE---eCCC--cEEEcCEEEEeccCcCCCcchhhcCCc
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~---~~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~  327 (497)
                      ..+...+.+.++++|++++.+++|++++..+++.+. +.   +.+|  .++.+|.||+|+|.... .+++.+|+.
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~  250 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP  250 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence            466777888888899999999999999865444322 22   2334  36899999999998653 566666654

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02507 glutathione reductase

Probab=98.22  E-value=4.3e-06  Score=86.64  Aligned_cols=98  Identities=17%  Similarity=0.267  Sum_probs=74.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..|++.|.   +|+|+++.+...   +.+        .   .++           .....+.+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~l~~~l  254 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELPL---RGF--------D---DEM-----------RAVVARNL  254 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCcC---ccc--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999886   899999875320   000        0   000           12345567


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++++++|.+++....  .+.+.+|+++.+|.+++|+|..|..
T Consensus       255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence            888999999999999875432  4566678889999999999988763

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.21  E-value=4.2e-06  Score=84.63  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=31.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+|+|||||+||+++|..|++.|+   +|+|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence            689999999999999999999998   8999999864

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.21  E-value=2.9e-05  Score=79.59  Aligned_cols=68  Identities=22%  Similarity=0.342  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHH-HCCcEEEcCCeEEEEEeCCCCcE-EEEE-eCCCc--EEEcCEEEEeccCcCCCcchhhcCCc
Q 010917          259 SLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRV-AAVK-LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       259 ~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~~~v-~~v~-~~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~  327 (497)
                      .+.+.+.+.+. ..|+++++++.|..++..+++.. ..+. +.+++  ++.+|.||+|.|.... .+++.+|+.
T Consensus       185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~  257 (497)
T PRK13339        185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP  257 (497)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence            45566666665 45999999999999986534332 2222 34442  6899999999998874 667777664

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.21  E-value=3e-06  Score=88.80  Aligned_cols=35  Identities=26%  Similarity=0.540  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..+||+|||||..|+++|+.|+++|+   +|+|||+.+
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~---~V~LlEk~d   39 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGL---RCILVERHD   39 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCC---eEEEEECCC
Confidence            35899999999999999999999998   899999975

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.21  E-value=2.8e-06  Score=85.03  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=30.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .||+||||||+|+++|..|++.|+   +|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGI---KTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence            689999999999999999999998   899999863

>PLN02487 zeta-carotene desaturase

Probab=98.20  E-value=6e-06  Score=86.04  Aligned_cols=60  Identities=17%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC--CC--cEEEEEe---CCCcEEEcCEEEEeccCc
Q 010917          256 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       256 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~~--~v~~v~~---~~g~~i~~D~vv~a~G~~  315 (497)
                      +...+.+.+.+.++++|.+|++++.|.+|+...  ++  ++.++.+   .+++.+++|.||++++..
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            344577888899999999999999999998652  33  3677777   344579999999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.20  E-value=5.1e-06  Score=82.36  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=70.3

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc--------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE  285 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~--------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  285 (497)
                      ..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+....        .+.+......+.+.+.|++++.++.+..+.
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~   95 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE   95 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence            457899999999999999999999999999999987654211        122333344456677899999998876553


Q ss_pred             e---CCCCcEE--EEEeCCCcEEEcCEEEEeccCc-CC
Q 010917          286 A---GSDGRVA--AVKLEDGSTIDADTIVIGIGAK-PT  317 (497)
Q Consensus       286 ~---~~~~~v~--~v~~~~g~~i~~D~vv~a~G~~-p~  317 (497)
                      .   ..++...  .+..+ +..+.+|.||+|+|.. |.
T Consensus        96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~  132 (352)
T PRK12770         96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR  132 (352)
T ss_pred             ccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC
Confidence            2   1111110  01111 2247899999999984 43

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.20  E-value=8.1e-06  Score=80.45  Aligned_cols=99  Identities=23%  Similarity=0.448  Sum_probs=76.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcchhhcc----------CHHHHHHHHHHHHHCC-cEEEcCCeEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNG-VKFVKGASIK  282 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~~~----------~~~~~~~~~~~l~~~G-V~i~~~~~v~  282 (497)
                      .++|||+|||+.|+.++..|.+.-  .+||+|++.+..+-..+          ..++...+++.++..+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            578999999999999999999874  88999999876543211          1234455777777555 998876 588


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      +|+.+  ++  .|.+.++..+++|.+|+++|.+++..
T Consensus        82 ~ID~~--~k--~V~~~~~~~i~YD~LVvalGs~~~~f  114 (405)
T COG1252          82 DIDRD--AK--KVTLADLGEISYDYLVVALGSETNYF  114 (405)
T ss_pred             EEccc--CC--EEEeCCCccccccEEEEecCCcCCcC
Confidence            88753  32  57788878899999999999998753

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.19  E-value=5.4e-06  Score=85.93  Aligned_cols=97  Identities=15%  Similarity=0.203  Sum_probs=72.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+..|..|++.|.   +|||+++...  +  +.+..           .+           .....+.+
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~--l--~~~d~-----------~~-----------~~~l~~~l  232 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIP--L--RGFDR-----------QC-----------SEKVVEYM  232 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCcc--c--ccCCH-----------HH-----------HHHHHHHH
Confidence            3689999999999999999999987   8999986321  1  10100           00           12346678


Q ss_pred             HHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++.++.+..+....  ..+.+.+|+++.+|.|++|+|..|..
T Consensus       233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence            88999999998888776433  24666778889999999999988763

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.19  E-value=3e-06  Score=85.23  Aligned_cols=35  Identities=14%  Similarity=0.335  Sum_probs=32.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+||+||||||+|+++|..|++.|+   +|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence            4799999999999999999999998   8999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR03452 mycothione_red mycothione reductase

Probab=98.19  E-value=6.1e-06  Score=84.59  Aligned_cols=97  Identities=27%  Similarity=0.368  Sum_probs=71.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+..|..|++.|.   +|++|++.+...   +.+.           .++           ...+.+ +
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll---~~~d-----------~~~-----------~~~l~~-~  219 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL---RHLD-----------EDI-----------SDRFTE-I  219 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc---cccC-----------HHH-----------HHHHHH-H
Confidence            4799999999999999999999986   899999876421   0000           000           011222 3


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      .+.++++++++++.+++.+..  .+.+.+|+++.+|.+++|+|..|..
T Consensus       220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence            346899999999999986543  4556678889999999999988763

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.19  E-value=9.4e-06  Score=88.75  Aligned_cols=102  Identities=19%  Similarity=0.432  Sum_probs=76.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEecCCcch------hhccC----HHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~~------~~~~~----~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      .++|||||+|+.|+.+|..|.++    +.+||++.+.+.+.      +..+.    .++.....+.+++.||+++.++.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            35899999999999999999764    46899998887642      11111    122222345678899999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                      .+++..  .+  .|.+.+|+++.+|.+|+|||.+|....+
T Consensus        83 ~~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p~i  118 (847)
T PRK14989         83 ITINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIPPI  118 (847)
T ss_pred             EEEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCCCC
Confidence            999753  22  4667888899999999999999875443

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.19  E-value=5.2e-06  Score=83.68  Aligned_cols=35  Identities=14%  Similarity=0.292  Sum_probs=32.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +.||+||||||+|+++|..|++.|+   +|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence            4799999999999999999999998   8999999874

>PRK07236 hypothetical protein; Provisional

Probab=98.18  E-value=1.2e-05  Score=80.90  Aligned_cols=100  Identities=22%  Similarity=0.331  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----ccCHHHHHHHH-------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYE-------------------------  265 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----~~~~~~~~~~~-------------------------  265 (497)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.....     .+.+...+.+.                         
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~   85 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR   85 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence            578999999999999999999999999999988643211     01222222211                         


Q ss_pred             ------------------HHHHH--CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          266 ------------------QLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       266 ------------------~~l~~--~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                        +.|.+  .+++++.++++++++..++ .+ .+++.+|+++.+|.||.|-|....
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236         86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD-RV-TARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-eE-EEEECCCCEEEeCEEEECCCCCch
Confidence                              11111  1356899999999986533 33 578899999999999999997654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.18  E-value=6e-06  Score=85.09  Aligned_cols=98  Identities=18%  Similarity=0.323  Sum_probs=72.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      .++++|||||+.|+..|..+...   |.   +|+|+++.+...   +.+        +   .++           .....
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~---~Vtli~~~~~il---~~~--------d---~~~-----------~~~l~  238 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGG---KVTLCYRNNMIL---RGF--------D---STL-----------RKELT  238 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCC---eEEEEecCCccc---ccc--------C---HHH-----------HHHHH
Confidence            47999999999999999877654   54   899999876421   000        0   000           12345


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccCCCCCc
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +.+++.||++++++.+.++....   ..+.+.++.++++|.+++|+|..|..
T Consensus       239 ~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       239 KQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             HHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence            67788999999999999887532   35666778889999999999988763

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.18  E-value=7.1e-06  Score=84.06  Aligned_cols=97  Identities=19%  Similarity=0.342  Sum_probs=72.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..|++.|.   +|+|+++.+...   |..        .   ..+           ...+.+.+
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~---~~~-----------~~~l~~~l  209 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL---PRE--------D---RDI-----------ADNIATIL  209 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC---CCc--------C---HHH-----------HHHHHHHH
Confidence            4699999999999999999999987   899999875421   000        0   000           12345677


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEE--EECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v--~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||++++++++.+++.++..+  ..+++ ++.+|.+++|+|..|..
T Consensus       210 ~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        210 RDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence            88999999999999998655433  33444 58999999999988763

>PLN02661 Putative thiazole synthesis

Probab=98.17  E-value=5.2e-06  Score=80.16  Aligned_cols=37  Identities=22%  Similarity=0.413  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~   98 (497)
                      ...||+|||||+||+.||+.|++. |+   +|+|||+....
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~---kV~viEk~~~~  128 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNV---KVAIIEQSVSP  128 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCC---eEEEEecCccc
Confidence            357999999999999999999975 55   89999997653

>PRK13748 putative mercuric reductase; Provisional

Probab=98.17  E-value=6e-06  Score=87.36  Aligned_cols=96  Identities=20%  Similarity=0.322  Sum_probs=71.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..|++.|.   +|+|+++...++    ..        .   .++           ...+.+.+
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~----~~--------d---~~~-----------~~~l~~~l  320 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLFF----RE--------D---PAI-----------GEAVTAAF  320 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCcccc----cc--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899998753210    00        0   000           12345677


Q ss_pred             HHcCcEEEeCCcEEEEecCCCE--EEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||++++++.+..++.++..  +.++++ .+.+|.+++|+|..|+.
T Consensus       321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence            8899999999999988765443  333444 59999999999998864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.17  E-value=1e-05  Score=88.36  Aligned_cols=91  Identities=27%  Similarity=0.294  Sum_probs=68.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.+......+.+++.||++++++.+ .++ 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-  615 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-  615 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence            4689999999999999999999999999999987654221        123344455557778899999999876 222 


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                +.+.....+|.||+|+|..+.
T Consensus       616 ----------le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 ----------VEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ----------hhhheeccCCEEEECcCCCCC
Confidence                      122334568999999999864

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.17  E-value=2.3e-05  Score=75.47  Aligned_cols=97  Identities=21%  Similarity=0.295  Sum_probs=73.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                           
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            4899999999999999999999999999988542110                                           


Q ss_pred             ------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeccCcC
Q 010917          255 ------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       255 ------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vv~a~G~~p  316 (497)
                            .....+.+.+.+.+++.|++++.+++++++...++ .+ .+.+. ++.++.+|.||.|.|...
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence                  01124556677778889999999999999875433 33 23333 346799999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.16  E-value=5.6e-06  Score=87.52  Aligned_cols=33  Identities=33%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ||||||||.||++||..+++.|.   +|+|+||.+.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~---~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGL---NTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            79999999999999999999987   8999999753

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.16  E-value=1.9e-05  Score=81.56  Aligned_cols=51  Identities=20%  Similarity=0.353  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  313 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G  313 (497)
                      .+.+.+.+.+++  +++++++.|++|+..+++ + .|.+.+|+++.+|.||+++.
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~-~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-Y-EISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-E-EEEECCCCEEEeCEEEECCC
Confidence            344455555533  579999999999876443 3 57778888899999999985

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.16  E-value=2.8e-05  Score=80.30  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=33.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHc----CCCCCcEEEEcCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP   99 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~----g~~~~~V~lie~~~~~~   99 (497)
                      ++||+|||||+|||+||+.|+++    |+   +|+|+|+++...
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G   42 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG   42 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence            36999999999999999999998    77   899999997653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.16  E-value=6.8e-06  Score=86.98  Aligned_cols=35  Identities=26%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||||.|||+||..+++.|.   +|+|+||..
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~---~V~lveK~~   45 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGL---KTACITKVF   45 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence            45799999999999999999999886   899999975

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.15  E-value=3.3e-06  Score=74.28  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=33.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..||+||||||+||+||++|+++|.   +|+++|+...+
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~   65 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSF   65 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCc---eEEEEEeeccc
Confidence            4699999999999999999999988   89999998664

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.15  E-value=7.8e-06  Score=84.38  Aligned_cols=97  Identities=13%  Similarity=0.185  Sum_probs=70.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++....    +.+..           ++           .....+.+
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d~-----------~~-----------~~~l~~~L  230 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFDQ-----------DC-----------ANKVGEHM  230 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEecccc----cccCH-----------HH-----------HHHHHHHH
Confidence            3689999999999999999999987   89999864211    10000           00           12345677


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCC---cEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g---~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||++++++.+..+.....  .+.+.++   +++.+|.+++|+|..|..
T Consensus       231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence            889999999988887765332  3555554   379999999999988763

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.15  E-value=8.3e-06  Score=86.23  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||||.|||+||..+++.|.   +|+||||..
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~vleK~~   45 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGL---SVAVLSKVF   45 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence            45799999999999999999999887   899999974

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.15  E-value=4.2e-05  Score=76.94  Aligned_cols=56  Identities=29%  Similarity=0.452  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          258 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       258 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      ..+...+.+.+++.| ..+..++.+..++.. . ....|.+.+|+ +.+|.||+|+|...
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~  212 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA  212 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence            466777888889999 556668888888753 2 55578888887 99999999999653

>PRK14727 putative mercuric reductase; Provisional

Probab=98.14  E-value=8.3e-06  Score=84.30  Aligned_cols=96  Identities=20%  Similarity=0.366  Sum_probs=70.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..|++.|.   +|+|+++....+    ..        .   ..+           ...+.+.+
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l~----~~--------d---~~~-----------~~~l~~~L  238 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLLF----RE--------D---PLL-----------GETLTACF  238 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCCC----cc--------h---HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899998642210    00        0   000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|+++++++++..++....  .+...++ ++.+|.+|+|+|..|+.
T Consensus       239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence            888999999999998875444  3444444 58999999999998763

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.13  E-value=1.1e-05  Score=82.64  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAY   97 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~   97 (497)
                      ||||||||.||++||.+++++| .   +|+|+||.+.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~---~V~vlEk~~~   34 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAA---NVVLLEKMPV   34 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCc---cEEEEecCCC
Confidence            7999999999999999999998 6   8999999864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.12  E-value=1.7e-05  Score=84.57  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||||.|||+||..+++.|.   +|+|+||..
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~---~VilieK~~   68 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGY---NVKVFCYQD   68 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---cEEEEecCC
Confidence            35799999999999999999999987   899999854

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.12  E-value=3.5e-06  Score=61.40  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=28.1

Q ss_pred             EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           65 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        65 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      |||||++||++|..|++.|+   +|+|+|+.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS---EEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC---cEEEEecCccc
Confidence            89999999999999999987   99999999765

...

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.11  E-value=2.1e-06  Score=87.41  Aligned_cols=33  Identities=33%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ||||||+|.||++||.+++++|.   +|+||||.+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~---~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGA---KVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcC---eEEEEEeecc
Confidence            79999999999999999999997   8999999874

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.10  E-value=1.2e-05  Score=85.14  Aligned_cols=34  Identities=29%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||||.||++||.++++. .   +|+|+||..
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~---~VilleK~~   37 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-A---RTAVLTKLY   37 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-C---CEEEEeCCC
Confidence            357999999999999999999875 4   899999975

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.10  E-value=9.8e-06  Score=83.34  Aligned_cols=90  Identities=22%  Similarity=0.293  Sum_probs=70.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+++|..|++.|.+|+++++.+.+...        ..+.++.....+.+++.||+++.++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            4689999999999999999999999999999988765211        13556777777888999999999986521   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                             .+.+.+.. +.+|.||+|+|..
T Consensus       216 -------~v~~~~~~-~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDELR-AGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHHH-hhCCEEEEccCCC
Confidence                   12223333 7899999999985

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.09  E-value=1.9e-05  Score=81.36  Aligned_cols=59  Identities=20%  Similarity=0.300  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC--CC--cEEEEEeCCC---cEEEcCEEEEeccCc
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK  315 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~~--~v~~v~~~~g---~~i~~D~vv~a~G~~  315 (497)
                      +..+.+.+.+.++++|++|+.+++|++|+..+  ++  ++..+.+.+|   +++++|.||+|++..
T Consensus       218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            33455667788899999999999999998643  23  2666667544   569999999998853

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK07121 hypothetical protein; Validated

Probab=98.09  E-value=4.8e-05  Score=79.04  Aligned_cols=67  Identities=22%  Similarity=0.266  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEeccCc-CCCcchhh
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK-PTVSPFER  323 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~~-D~vv~a~G~~-p~~~~~~~  323 (497)
                      ...+...+.+.+++.|+++++++.++++..++++++..|...+ ++  .+.+ +.||+|+|-- .|.++++.
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~~  247 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVAR  247 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHHH
Confidence            3456777788889999999999999999765556777776543 32  5788 9999999854 34444443

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.09  E-value=1.2e-05  Score=88.86  Aligned_cols=93  Identities=24%  Similarity=0.201  Sum_probs=72.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|++||++++.+.+...        .++.++.+...+.+++.||+|++++.+-.   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            4799999999999999999999999999999987654321        13456666667788999999998865421   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCc-CC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~-p~  317 (497)
                             .+.+++.....+|.|++|+|.. |.
T Consensus       382 -------dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        382 -------TATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence                   3455555556799999999984 54

>PRK06834 hypothetical protein; Provisional

Probab=98.08  E-value=5.1e-05  Score=78.45  Aligned_cols=107  Identities=23%  Similarity=0.351  Sum_probs=78.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch---hh--cc-----------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QR--LF-----------------------------------  256 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~--~~-----------------------------------  256 (497)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...   ++  .+                                   
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            469999999999999999999999999999764211   00  00                                   


Q ss_pred             ---------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          257 ---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       257 ---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                                     -..+.+.+.+.+++.|++++.++++++++.++++ + .+++.+|+++.+|+||.|.|..+..  -
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~v--R  159 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLV--R  159 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCc--H
Confidence                           0122344556667789999999999999865443 3 4667788889999999999998743  2


Q ss_pred             hhcCCc
Q 010917          322 ERVGLN  327 (497)
Q Consensus       322 ~~~gl~  327 (497)
                      +.+++.
T Consensus       160 ~~lgi~  165 (488)
T PRK06834        160 KAAGID  165 (488)
T ss_pred             hhcCCC
Confidence            444444

>PTZ00058 glutathione reductase; Provisional

Probab=98.08  E-value=1.2e-05  Score=83.86  Aligned_cols=97  Identities=18%  Similarity=0.207  Sum_probs=71.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..|++.|.   +|+++++.+...   +..        +   ..+           .....+.+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il---~~~--------d---~~i-----------~~~l~~~L  288 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL---RKF--------D---ETI-----------INELENDM  288 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc---ccC--------C---HHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999875421   000        0   000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC---EEEECC-CcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~---~v~~~~-g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.||+++++..+.+++.+..   .+...+ ++++.+|.|++|+|..|.
T Consensus       289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence            888999999999999876432   233333 457999999999998776

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.07  E-value=0.00011  Score=64.83  Aligned_cols=138  Identities=22%  Similarity=0.312  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc-------------------------------------cCH
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP  258 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-------------------------------------~~~  258 (497)
                      ...|+|+|+|++|+-+|..|++.|.+|.+++++-.+....                                     -+.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            4679999999999999999999999999999884332110                                     011


Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeccCcCCCc-ch-hh--
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ER--  323 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vv~a~G~~p~~~-~~-~~--  323 (497)
                      .+...+....-+.|.+++....++.+--.++.++.++..+           |--.++++.||-+||.....- ++ +.  
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~  189 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP  189 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence            2333334444567899999999998765544367776653           224789999999999875421 22 11  


Q ss_pred             -cCCccc-CCC--------EEecCCCCCCCCcEEEeccccc
Q 010917          324 -VGLNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAA  354 (497)
Q Consensus       324 -~gl~~~-~g~--------i~vd~~~~t~~~~iya~GD~~~  354 (497)
                       ++.... .+.        ..|+.+. --.||+|++|=.++
T Consensus       190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~  229 (262)
T COG1635         190 ELGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVN  229 (262)
T ss_pred             ccccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHH
Confidence             122221 011        2222222 25799999997664

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.07  E-value=1.3e-05  Score=82.52  Aligned_cols=98  Identities=14%  Similarity=0.271  Sum_probs=71.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+..|..|++.|.   +|+++++.+...   +.+        .   .++           .....+.
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~~~~~  219 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL---PLE--------D---PEV-----------SKQAQKI  219 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cch--------h---HHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   000        0   000           1234556


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC-EEEE--CC--CcEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ-TLIT--NS--GKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~-~v~~--~~--g~~i~~d~lvlAtG~~~~~  185 (497)
                      +++. +++++++++.+++.... .+++  .+  +.++++|.+++|+|..|+.
T Consensus       220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~  270 (460)
T PRK06292        220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT  270 (460)
T ss_pred             Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence            6777 99999999999976543 3442  23  3469999999999988763

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.07  E-value=1.3e-05  Score=84.95  Aligned_cols=35  Identities=34%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||||.||++||.++++.|.   +|+|+||..
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~lveK~~   62 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGY---KTACISKLF   62 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---cEEEEeccC
Confidence            45799999999999999999999987   899999986

>PLN02463 lycopene beta cyclase

Probab=98.06  E-value=4.2e-05  Score=77.73  Aligned_cols=98  Identities=26%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-hhc----------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL----------------------------------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~----------------------------------------  255 (497)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++.+... ++.                                        
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            379999999999999999999999999998864211 000                                        


Q ss_pred             ---cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          256 ---FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       256 ---~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                         ....+.+.+.+.+.+.|++++ ..+|++++..+++  ..|.+++|+++.+|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence               011223445555677899997 4689999865333  3578889989999999999998754

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.06  E-value=1.1e-05  Score=84.01  Aligned_cols=37  Identities=22%  Similarity=0.460  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ++.++||+|||||+.|+++|+.|+++|.   +|+|+|+.+
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~---~V~LlEk~d   39 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGL---KVLLCEKDD   39 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCC---cEEEEECCC
Confidence            3456899999999999999999999998   899999986

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.06  E-value=1.5e-05  Score=84.61  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||+|.|||+||..+++.|.   +|+|+||..
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~---~VilveK~~   83 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGF---NTACITKLF   83 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCC---cEEEEEcCC
Confidence            35799999999999999999999987   899999985

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.06  E-value=1.1e-05  Score=85.96  Aligned_cols=36  Identities=31%  Similarity=0.512  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...||||||||.|||+||..+++.|.   +|+||||...
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence            35799999999999999999999987   8999999753

>PRK07045 putative monooxygenase; Reviewed

Probab=98.05  E-value=5.9e-05  Score=75.97  Aligned_cols=101  Identities=21%  Similarity=0.260  Sum_probs=76.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh---------h--------------------c------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R--------------------L------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------~--------------------~------------  255 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..         .                    .            
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4799999999999999999999999999997743210         0                    0            


Q ss_pred             -----------cC-------HHHHHHHHHHHH-HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          256 -----------FT-------PSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       256 -----------~~-------~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                                 .+       ..+.+.+.+.+. ..|++++++++++.++..+++.+..+++++|+++.+|+||-|.|...
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence                       00       012233344443 35799999999999987766665678889999999999999999875


Q ss_pred             C
Q 010917          317 T  317 (497)
Q Consensus       317 ~  317 (497)
                      .
T Consensus       166 ~  166 (388)
T PRK07045        166 M  166 (388)
T ss_pred             H
Confidence            3

>PRK07538 hypothetical protein; Provisional

Probab=98.05  E-value=1.4e-05  Score=81.23  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ||+||||||||+++|..|+++|+   +|+|+|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence            79999999999999999999998   8999999864

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.05  E-value=5.2e-05  Score=76.48  Aligned_cols=108  Identities=28%  Similarity=0.368  Sum_probs=79.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--------------hh---------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------QR---------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------~~---------------------------  254 (497)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+...              +.                           
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            4579999999999999999999999999999753210              00                           


Q ss_pred             ---------cc---------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          255 ---------LF---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       255 ---------~~---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                               .+               ...+.+.+.+.+++.|++++.++++++++..++ .+ .+++++|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-RV-RLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eE-EEEECCCCEEEeCEEEE
Confidence                     00               012334455666778999999999999986533 33 47778888999999999


Q ss_pred             eccCcCCCcchhhcCCc
Q 010917          311 GIGAKPTVSPFERVGLN  327 (497)
Q Consensus       311 a~G~~p~~~~~~~~gl~  327 (497)
                      |.|..+.  +.+.+++.
T Consensus       164 AdG~~S~--vr~~~g~~  178 (392)
T PRK08773        164 ADGAAST--LRELAGLP  178 (392)
T ss_pred             ecCCCch--HHHhhcCC
Confidence            9999874  33444443

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.05  E-value=1.2e-05  Score=78.86  Aligned_cols=100  Identities=20%  Similarity=0.333  Sum_probs=79.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ...+||++|||..|+.+|..|+...+   +||+|++++.. +.     . ++.+      .+           ......+
T Consensus       212 ~~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~-----~-lf~~------~i-----------~~~~~~y  264 (478)
T KOG1336|consen  212 LGGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LP-----R-LFGP------SI-----------GQFYEDY  264 (478)
T ss_pred             cCceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hh-----h-hhhH------HH-----------HHHHHHH
Confidence            36789999999999999999999876   89999999753 11     1 1110      01           1345778


Q ss_pred             HHHcCcEEEeCCcEEEEecCC----CEEEECCCcEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      |++++|++++++.+.+++...    ..|.+.++.++.+|-||+.+|+.|..
T Consensus       265 ~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  265 YENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             HHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence            899999999999988887554    25788999999999999999999874

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.02  E-value=1.7e-05  Score=74.35  Aligned_cols=51  Identities=16%  Similarity=0.220  Sum_probs=40.0

Q ss_pred             CHhHHHHcCcEEEeCCcEEEEecC-----CCEEEECCCcEEEeccEEeccCCCCCc
Q 010917          135 TPEWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       135 ~~~~~~~~~v~~~~~~~v~~i~~~-----~~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.+++.|+.++.+..|..+...     ...|.+.+|..+.++++|+++|+.-..
T Consensus       159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k  214 (399)
T KOG2820|consen  159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK  214 (399)
T ss_pred             HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence            344567789999999988877632     236788899999999999999987544

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.01  E-value=2.4e-05  Score=82.62  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=31.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..||||||+|.|||+||.++++.|.   +|+|+||..
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lleK~~   40 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQ---SCALLSKVF   40 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence            5799999999999999999999887   899999975

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.01  E-value=1.6e-05  Score=82.02  Aligned_cols=97  Identities=15%  Similarity=0.304  Sum_probs=69.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +||||++.+...   +..        +   ..+           .....+.+
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il---~~~--------d---~~~-----------~~~~~~~l  225 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVI---PAA--------D---KDI-----------VKVFTKRI  225 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCC---CcC--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999876421   000        0   000           11234556


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECC--C--cEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~--g--~~i~~d~lvlAtG~~~~~  185 (497)
                      ++. +++++++.+..++....  .+.+.+  +  +++++|.+|+|+|..|..
T Consensus       226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~  276 (471)
T PRK06467        226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG  276 (471)
T ss_pred             hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence            666 99999999998875443  344333  2  369999999999998763

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.01  E-value=1.2e-05  Score=81.37  Aligned_cols=89  Identities=22%  Similarity=0.292  Sum_probs=68.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEE-EEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIK-NLE  285 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~-~i~  285 (497)
                      .+++|+|||+|+.|+.+|..|++.|+.||++++.+.+...        .++.++.+...+.|++.|++|+.++++- .+ 
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i-  200 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDI-  200 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcC-
Confidence            4689999999999999999999999999999888654321        2455778888899999999999997653 12 


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          286 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       286 ~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                                +++. -.-++|.|++++|..
T Consensus       201 ----------t~~~-L~~e~Dav~l~~G~~  219 (457)
T COG0493         201 ----------TLEE-LLKEYDAVFLATGAG  219 (457)
T ss_pred             ----------CHHH-HHHhhCEEEEecccc
Confidence                      1111 123459999999974

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.01  E-value=1.8e-05  Score=81.04  Aligned_cols=92  Identities=22%  Similarity=0.233  Sum_probs=69.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+++|..|++.|.+|+++++.+.+..        ..++.++.....+.+++.||+++++..+..   
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence            467999999999999999999999999999998765421        014556666677778899999999875411   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccC-cCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~-~p~  317 (497)
                             .+.+.+. ...+|.||+|+|. .|.
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                   1333332 3568999999997 564

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.00  E-value=2.1e-05  Score=81.45  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=30.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +||+|||||+||+.||..+++.|.   +|+|+++..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC---CEEEEeccc
Confidence            589999999999999999999987   899999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK10262 thioredoxin reductase; Provisional

Probab=98.00  E-value=9.2e-05  Score=72.47  Aligned_cols=100  Identities=19%  Similarity=0.283  Sum_probs=69.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC---cch--------h----hccCHHHHHHHHHHHHHCCcEEEcCC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HLL--------Q----RLFTPSLAQRYEQLYQQNGVKFVKGA  279 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~---~~~--------~----~~~~~~~~~~~~~~l~~~GV~i~~~~  279 (497)
                      ..++|+|||+|+.|+.+|..++++|.++++++...   .+.        +    ....+.+.+.+.+.....++++..+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            46789999999999999999999999999886321   100        0    1122345667777777788887765 


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          280 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       280 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                      .+..++.. ++.. .+..++ ..+.+|.||+|+|..|+.
T Consensus        84 ~v~~v~~~-~~~~-~v~~~~-~~~~~d~vilAtG~~~~~  119 (321)
T PRK10262         84 HINKVDLQ-NRPF-RLTGDS-GEYTCDALIIATGASARY  119 (321)
T ss_pred             EEEEEEec-CCeE-EEEecC-CEEEECEEEECCCCCCCC
Confidence            46667643 3322 233333 368999999999999864

>PRK08244 hypothetical protein; Provisional

Probab=97.99  E-value=6.9e-05  Score=77.96  Aligned_cols=101  Identities=22%  Similarity=0.328  Sum_probs=73.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  254 (497)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+.....                                          
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            36999999999999999999999999999976321100                                          


Q ss_pred             -c------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeccCcCC
Q 010917          255 -L------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 -~------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~~p~  317 (497)
                       +            + -..+.+.+.+.+++.|++++.++++++++..+++....+...+| +++.+|+||.|.|....
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence             0            0 01234556666778899999999999998654443222333356 47999999999998764

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.00038  Score=66.88  Aligned_cols=98  Identities=22%  Similarity=0.370  Sum_probs=73.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcE-EEEecC---------------CcchhhccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDT-TIIFPE---------------NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  280 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~V-tlv~~~---------------~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~  280 (497)
                      -.|+|||+|+.|+-.|-.+.+.+.++ .+++..               +.+......+++.+.+++..+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            36999999999999999999999884 444432               11111134567778888888888999988 67


Q ss_pred             EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          281 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       281 v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                      +.+++..++  ...|.+.+++ +.++.||+|+|..+..
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence            788875432  4467888887 9999999999998753

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.98  E-value=5.9e-06  Score=73.17  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..+||+|||||||||+||+.|++.|+   +|+++|++...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~   52 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSP   52 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCC
Confidence            35899999999999999999999998   89999998653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.98  E-value=9.1e-05  Score=74.49  Aligned_cols=99  Identities=30%  Similarity=0.375  Sum_probs=76.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC-cchhh----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQR----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~~----------------------------------------  254 (497)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+ .+.+.                                        
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            3579999999999999999999999999999871 11110                                        


Q ss_pred             -------------------ccCHHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEecc
Q 010917          255 -------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIG  313 (497)
Q Consensus       255 -------------------~~~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vv~a~G  313 (497)
                                         ..-..+.+.+.+.+.+.+ |+++.+++|+.++.++ +.+. ++++ +|+++.||+||-|-|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCC
Confidence                               001124555666676665 9999999999999764 4444 7777 999999999999999


Q ss_pred             CcC
Q 010917          314 AKP  316 (497)
Q Consensus       314 ~~p  316 (497)
                      ...
T Consensus       160 ~~S  162 (387)
T COG0654         160 ANS  162 (387)
T ss_pred             Cch
Confidence            754

>PRK12831 putative oxidoreductase; Provisional

Probab=97.96  E-value=2.3e-05  Score=80.47  Aligned_cols=93  Identities=24%  Similarity=0.313  Sum_probs=68.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------h-ccC-HHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLE  285 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~-~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~  285 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..       . .++ .++.....+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            578999999999999999999999999999997654311       0 012 22555666778899999999985521  


Q ss_pred             eCCCCcEEEEEeCCC-cEEEcCEEEEeccC-cCC
Q 010917          286 AGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT  317 (497)
Q Consensus       286 ~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~-~p~  317 (497)
                              .+.+.+. +.+.+|.||+|+|. .|.
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence                    1223332 34569999999998 464

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.96  E-value=0.00012  Score=74.67  Aligned_cols=107  Identities=21%  Similarity=0.372  Sum_probs=76.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------------ccC-------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------LFT-------------------------  257 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------~~~-------------------------  257 (497)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+...              .++                         
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            46999999999999999999999999999976432100              000                         


Q ss_pred             ----------------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          258 ----------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       258 ----------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                                            ..+-+.+.+..++.|++++.+++|+++... ++.+..+. .++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                  011234555667789999999999998754 45554444 567789999999999985


Q ss_pred             CCCcchhhcCCc
Q 010917          316 PTVSPFERVGLN  327 (497)
Q Consensus       316 p~~~~~~~~gl~  327 (497)
                      .  .+.+.+++.
T Consensus       164 s--~l~~~lgl~  173 (428)
T PRK10157        164 S--ILAEKLGMA  173 (428)
T ss_pred             H--HHHHHcCCC
Confidence            3  455555543

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.96  E-value=9.9e-05  Score=74.52  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------cc-----
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF-----  256 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------~~-----  256 (497)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+.+...                                  ..     
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            568999999999999999999999999999987432100                                  00     


Q ss_pred             --------C----------------HHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917          257 --------T----------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  311 (497)
Q Consensus       257 --------~----------------~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a  311 (497)
                              +                .++.+.+.+.+.+. +++++.++++++++..++ .+ .+.+.+|+++.+|.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-GV-TVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-ce-EEEEcCCCEEecCEEEEC
Confidence                    0                01223344444445 499999999999985433 33 477788889999999999


Q ss_pred             ccCcCC
Q 010917          312 IGAKPT  317 (497)
Q Consensus       312 ~G~~p~  317 (497)
                      .|....
T Consensus       162 dG~~S~  167 (396)
T PRK08163        162 DGVKSV  167 (396)
T ss_pred             CCcChH
Confidence            998754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.95  E-value=2.8e-05  Score=79.98  Aligned_cols=92  Identities=17%  Similarity=0.321  Sum_probs=69.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..        ..++.++.....+.+++.|++++.++.+..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            468999999999999999999999999999998875421        1135566666778889999999999866321  


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                              +.+.+ ....+|.||+|+|..+.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                    11111 12469999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.94  E-value=3e-05  Score=79.25  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=67.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEecCCcchhhc---------cCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~~~~---------~~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      .+++|+|||+|+.|+.+|..|++  .|++|+|+++.+.+....         ....+...+.+.+++.+|+++.+..+-.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46899999999999999999987  799999999998654210         1123344566677888999998765421


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                .+.+++-. ..+|.||+|+|..+.
T Consensus       105 ----------dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ----------DVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence                      23333332 469999999999764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.94  E-value=9.9e-05  Score=77.68  Aligned_cols=98  Identities=29%  Similarity=0.416  Sum_probs=73.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh------------h---ccCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------R---LFTPSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------~---~~~~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      -.|+|||||+.|+.+|..|++.|.+|+++++.. +..            .   .....+.+.+.+.+++.|++++ +..+
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V   82 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV   82 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence            469999999999999999999999999999753 210            0   0124566777778888999986 5678


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ..++..  +....+.+.++ .+.+|.+|+|+|.+|...
T Consensus        83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            888753  22334556555 589999999999988643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.93  E-value=4.7e-05  Score=81.16  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~   97 (497)
                      +.+.+|+||||||+||++|..|++. |.   +++|||+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence            3468999999999999999999995 88   8999999863

>PRK07588 hypothetical protein; Provisional

Probab=97.93  E-value=0.00011  Score=74.12  Aligned_cols=98  Identities=23%  Similarity=0.250  Sum_probs=71.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+...                                           
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            6999999999999999999999999999876432100                                           


Q ss_pred             -ccC-----------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          255 -LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       255 -~~~-----------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                       .++                 ..+...+.+.+ ..|+++++++++++++..++ .+ .+.+++|+++.+|.||-|-|...
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRD-GV-RVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCC-eE-EEEECCCCEEEeCEEEECCCCCc
Confidence             000                 00112222222 34799999999999986533 33 47888999999999999999865


Q ss_pred             CC
Q 010917          317 TV  318 (497)
Q Consensus       317 ~~  318 (497)
                      ..
T Consensus       159 ~v  160 (391)
T PRK07588        159 HV  160 (391)
T ss_pred             cc
Confidence            43

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.92  E-value=5.5e-05  Score=79.92  Aligned_cols=66  Identities=21%  Similarity=0.315  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEeccCcC-CCcchhh
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKP-TVSPFER  323 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~~-D~vv~a~G~~p-~~~~~~~  323 (497)
                      +..+...+.+.+++.||+++.++.++++..+ ++++.+|...+ ++  ++.+ +.||+|+|--. |.+++++
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~  290 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE  290 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence            4567777888899999999999999998753 67777776643 33  4776 68999988643 4444444

>PLN02546 glutathione reductase

Probab=97.92  E-value=3.6e-05  Score=80.47  Aligned_cols=99  Identities=21%  Similarity=0.264  Sum_probs=70.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+..|..|++.|.   +|+|+++.+...   +.+        .   ..+           .....+.
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il---~~~--------d---~~~-----------~~~l~~~  302 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVL---RGF--------D---EEV-----------RDFVAEQ  302 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccc---ccc--------C---HHH-----------HHHHHHH
Confidence            35799999999999999999999876   899999875421   000        0   000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecC-CC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||++++++.+..+... ..  .+.+.+++...+|.+++|+|..|..
T Consensus       303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence            78899999999999888642 22  2344455445589999999988764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.92  E-value=3.8e-05  Score=80.67  Aligned_cols=33  Identities=36%  Similarity=0.472  Sum_probs=30.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..||||||||.||++||..+ +.|.   +|+|+||.+
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~---~VilleK~~   39 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGK---NVVIVSKGL   39 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCC---CEEEEEccC
Confidence            47999999999999999999 8876   899999975

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.91  E-value=0.00014  Score=73.80  Aligned_cols=99  Identities=18%  Similarity=0.330  Sum_probs=73.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----------ch-------h-------------hc-----------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LL-------Q-------------RL-----------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~----------~~-------~-------------~~-----------  255 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.          ..       +             ..           
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            3699999999999999999999999999997641          00       0             00           


Q ss_pred             ------------cC---------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 010917          256 ------------FT---------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  308 (497)
Q Consensus       256 ------------~~---------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~v  308 (497)
                                  ++               ..+.+.+.+.+++.|++++.++++.+++..+++ + .+++.+|+++.+|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~v  160 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEE
Confidence                        00               012223445566779999999999999865443 3 477888989999999


Q ss_pred             EEeccCcCC
Q 010917          309 VIGIGAKPT  317 (497)
Q Consensus       309 v~a~G~~p~  317 (497)
                      |.|.|....
T Consensus       161 VgAdG~~S~  169 (405)
T PRK05714        161 VAADGANSA  169 (405)
T ss_pred             EEecCCCch
Confidence            999998653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.91  E-value=2.9e-05  Score=82.29  Aligned_cols=98  Identities=18%  Similarity=0.151  Sum_probs=68.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH-
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW-  138 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  138 (497)
                      .++|+|||||+.|+..|..|++.|.   +||||++.+...   +.+        +.   ++           .....+. 
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll---~~~--------d~---ei-----------s~~l~~~l  363 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLL---PLL--------DA---DV-----------AKYFERVF  363 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccc---ccC--------CH---HH-----------HHHHHHHH
Confidence            4689999999999999999999986   899999876521   000        00   00           0122333 


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC----EEEEC-------CC--------cEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ----TLITN-------SG--------KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~----~v~~~-------~g--------~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||++++++.|..++....    .+.+.       ++        +++.+|.|++|||..|..
T Consensus       364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt  429 (659)
T PTZ00153        364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT  429 (659)
T ss_pred             hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence            3567999999999999976432    23222       11        269999999999988763

>PRK06184 hypothetical protein; Provisional

Probab=97.90  E-value=0.00014  Score=75.83  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------c-------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L-------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------~-------  255 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...                                  .       
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            46999999999999999999999999999986322100                                  0       


Q ss_pred             ----------------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEE
Q 010917          256 ----------------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  309 (497)
Q Consensus       256 ----------------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vv  309 (497)
                                            + -..+.+.+.+.+.+.|++++.++++++++.++++ + .+++   .+++++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence                                  0 0112345666677889999999999999866444 2 2334   556789999999


Q ss_pred             EeccCcC
Q 010917          310 IGIGAKP  316 (497)
Q Consensus       310 ~a~G~~p  316 (497)
                      .|.|...
T Consensus       162 gADG~~S  168 (502)
T PRK06184        162 GADGGRS  168 (502)
T ss_pred             ECCCCch
Confidence            9999764

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.89  E-value=0.00014  Score=73.69  Aligned_cols=106  Identities=25%  Similarity=0.375  Sum_probs=78.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcchh------------------h-----------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ------------------R-----------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~------------------~-----------------------  254 (497)
                      +|+|||+|+.|+-+|..|++.|  .+|+++++.+...+                  .                       
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5899999999999999999995  89999997632100                  0                       


Q ss_pred             ----------c---------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 010917          255 ----------L---------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  309 (497)
Q Consensus       255 ----------~---------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv  309 (497)
                                .               ....+.+.+.+.+.+.|++++.++++++++..++ .+ .+++++|+++.+|.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-GV-TVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEE
Confidence                      0               0012345566667778999999999999986433 33 5777888899999999


Q ss_pred             EeccCcCCCcchhhcCCc
Q 010917          310 IGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       310 ~a~G~~p~~~~~~~~gl~  327 (497)
                      .|.|....  +.+.+++.
T Consensus       161 ~AdG~~S~--vr~~~g~~  176 (403)
T PRK07333        161 AADGARSK--LRELAGIK  176 (403)
T ss_pred             EcCCCChH--HHHHcCCC
Confidence            99998764  44445544

>PRK07190 hypothetical protein; Provisional

Probab=97.89  E-value=0.00022  Score=73.68  Aligned_cols=107  Identities=18%  Similarity=0.307  Sum_probs=77.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh----------------------------------------hc-
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------RL-  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------------~~-  255 (497)
                      ..|+|||+|++|+-+|..|++.|.+|.++++.+.+..                                        .. 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4799999999999999999999999999987732100                                        00 


Q ss_pred             ---------cC------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          256 ---------FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       256 ---------~~------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                               ..            ..+...+.+.+++.|++++.++++++++.++++.  .+.+.+|+++.++.||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence                     00            0122344556678899999999999998765442  345677889999999999998


Q ss_pred             cCCCcchhhcCCc
Q 010917          315 KPTVSPFERVGLN  327 (497)
Q Consensus       315 ~p~~~~~~~~gl~  327 (497)
                      +..  .-+.+|+.
T Consensus       164 ~S~--vR~~lgi~  174 (487)
T PRK07190        164 RSF--VRNHFNVP  174 (487)
T ss_pred             CHH--HHHHcCCC
Confidence            642  23344554

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.89  E-value=5.1e-05  Score=78.64  Aligned_cols=81  Identities=20%  Similarity=0.254  Sum_probs=64.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++|+|+|+|.+|+++|..|.++|.+|+++++.+.        .....+.+.+++.||+++.+..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            478999999999999999999999999999986642        223345566888999998775432            


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                            ....+|.||+++|..|+.+++
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~   95 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLL   95 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHH
Confidence                  124589999999999998874

>PRK05868 hypothetical protein; Validated

Probab=97.86  E-value=0.00016  Score=72.24  Aligned_cols=99  Identities=22%  Similarity=0.212  Sum_probs=71.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  254 (497)
                      ++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                          
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            47999999999999999999999999999977432110                                          


Q ss_pred             --ccC--H-H-----------HHHHHHHHHH---HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          255 --LFT--P-S-----------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       255 --~~~--~-~-----------~~~~~~~~l~---~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                        ...  . .           ....+.+.|.   ..|+++++++++++++.+ ++.+ .+++.+|+++.+|+||-|-|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCC
Confidence              000  0 0           0112223322   368999999999999754 3333 5788999999999999999976


Q ss_pred             CC
Q 010917          316 PT  317 (497)
Q Consensus       316 p~  317 (497)
                      ..
T Consensus       160 S~  161 (372)
T PRK05868        160 SN  161 (372)
T ss_pred             ch
Confidence            54

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.86  E-value=4.6e-05  Score=78.74  Aligned_cols=90  Identities=24%  Similarity=0.320  Sum_probs=68.3

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-------hh-ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.       +. .++.++.....+.+++.||+++.++.+.. + 
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~-  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D-  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence            45799999999999999999999999999999887542       11 13456666666778899999999987631 1 


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                              +. .++....+|.|++|+|..
T Consensus       220 --------~~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 --------IS-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             --------cC-HHHHHhhCCEEEEccCCC
Confidence                    10 111235799999999997

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.85  E-value=4.7e-05  Score=83.17  Aligned_cols=93  Identities=22%  Similarity=0.273  Sum_probs=69.3

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.++.....+.+++.||++++++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            3679999999999999999999999999999986543210        12445666666778899999999875411   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccC-cCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~-~p~  317 (497)
                             .+.+++.....+|.||+|+|. .|.
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence                   233444445679999999998 465

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.84  E-value=0.00017  Score=74.90  Aligned_cols=96  Identities=24%  Similarity=0.368  Sum_probs=69.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC-cchh-------------------hcc--------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ-------------------RLF--------------------  256 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~-------------------~~~--------------------  256 (497)
                      -.|+|||||+.|+++|..+++.|.+|.++++.. .+..                   ..+                    
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            369999999999999999999999999998862 1100                   000                    


Q ss_pred             -------------CH-HHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          257 -------------TP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       257 -------------~~-~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                                   +. .+...+.+.+++. |++++ ...+.++... ++++.+|.+.+|..+.|+.||+|+|.
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCc
Confidence                         00 0123344444544 88886 4467777643 66778899999999999999999994

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.84  E-value=0.0002  Score=71.96  Aligned_cols=97  Identities=22%  Similarity=0.340  Sum_probs=72.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcchhh--------cc--------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------LF--------------------------------  256 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~--------~~--------------------------------  256 (497)
                      .|+|||+|+.|+-+|..|++.| .+|+++++.+.+...        .+                                
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            4899999999999999999999 999999876422100        00                                


Q ss_pred             -----------------------CHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEec
Q 010917          257 -----------------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  312 (497)
Q Consensus       257 -----------------------~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~  312 (497)
                                             -..+.+.+.+.+.+ .|++++.++++++++..+++ + .+++++|+++.+|.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEec
Confidence                                   01123344455555 49999999999999865443 3 4677888899999999999


Q ss_pred             cCcC
Q 010917          313 GAKP  316 (497)
Q Consensus       313 G~~p  316 (497)
                      |...
T Consensus       159 G~~S  162 (382)
T TIGR01984       159 GANS  162 (382)
T ss_pred             CCCh
Confidence            9764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.84  E-value=0.00027  Score=73.40  Aligned_cols=136  Identities=21%  Similarity=0.280  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------------  255 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~----------------------------------------  255 (497)
                      .|+|+|||+|.+|+-.+..|.+.|.+++++++.+.+..-.                                        
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            3799999999999999999999999999999885432210                                        


Q ss_pred             -cCHHHHHHHHHHHHHCCc--EEEcCCeEEEEEeCCCC---cEEEEEeC-CCc--EEEcCEEEEeccCc--CCCcchhhc
Q 010917          256 -FTPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DGS--TIDADTIVIGIGAK--PTVSPFERV  324 (497)
Q Consensus       256 -~~~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~~---~v~~v~~~-~g~--~i~~D~vv~a~G~~--p~~~~~~~~  324 (497)
                       -..++.++++...+..++  .+.++++|.+++..++.   ..-.|++. +|+  +..+|.||+|+|.-  |+.+.-.--
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~  160 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP  160 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence             014577888888887776  58899999999875442   12234454 342  45689999999974  443320011


Q ss_pred             CCcccCCCEEecCCCCC----CCCcEEEecc
Q 010917          325 GLNSSVGGIQVDGQFRT----RMPGIFAIGD  351 (497)
Q Consensus       325 gl~~~~g~i~vd~~~~t----~~~~iya~GD  351 (497)
                      |++.-.|.+.--..++.    ...+|-++|-
T Consensus       161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~  191 (531)
T PF00743_consen  161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGG  191 (531)
T ss_dssp             TGGGHCSEEEEGGG--TGGGGTTSEEEEESS
T ss_pred             hhhcCCeeEEccccCcChhhcCCCEEEEEeC
Confidence            33322344443333433    3456777774

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.84  E-value=9e-05  Score=68.77  Aligned_cols=66  Identities=9%  Similarity=0.121  Sum_probs=46.4

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCC---cEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS  329 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~---~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~  329 (497)
                      .+-+.++..|-+++++.+++.+..+.++   .-..|....++++.+..+|-|+|...+ ...+.++++.+
T Consensus       201 s~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d  269 (453)
T KOG2665|consen  201 SFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD  269 (453)
T ss_pred             HHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence            3444478889999999999998866543   222344445688999999999999865 34455555543

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.83  E-value=4.7e-06  Score=80.33  Aligned_cols=100  Identities=24%  Similarity=0.309  Sum_probs=71.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcC-----------CCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHG-----------MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS  129 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g-----------~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  129 (497)
                      -++|||||||.|+..|.+|+..-           ..+.+|||+|..++.           |...++   ++         
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i-----------L~mFdk---rl---------  275 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI-----------LNMFDK---RL---------  275 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH-----------HHHHHH---HH---------
Confidence            47999999999999999988531           124579999988753           110000   11         


Q ss_pred             CCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCc
Q 010917          130 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~  185 (497)
                        ..+.++.+.+.+|++.+++.|..++.+.-.+...+|  ++++|--||.|||..+++
T Consensus       276 --~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp  331 (491)
T KOG2495|consen  276 --VEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP  331 (491)
T ss_pred             --HHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence              134466778889999999889888765544444444  479999999999998874

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.83  E-value=0.00018  Score=73.08  Aligned_cols=100  Identities=23%  Similarity=0.337  Sum_probs=69.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch----hh--cc---------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR--LF---------------------------------  256 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~~--~~---------------------------------  256 (497)
                      ..+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.    .+  .+                                 
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            3579999999999999999999999999999764321    00  00                                 


Q ss_pred             ----------------------CHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCC--C-cEEEcCEEEE
Q 010917          257 ----------------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED--G-STIDADTIVI  310 (497)
Q Consensus       257 ----------------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~--g-~~i~~D~vv~  310 (497)
                                            ...+.+.+.+.+.+. ||+++.++++++++..+++ + .+++.+  + .++.+|+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEE
Confidence                                  011222333434443 7999999999999765443 2 355543  2 3699999999


Q ss_pred             eccCcCC
Q 010917          311 GIGAKPT  317 (497)
Q Consensus       311 a~G~~p~  317 (497)
                      |.|....
T Consensus       176 ADG~~S~  182 (415)
T PRK07364        176 ADGARSP  182 (415)
T ss_pred             eCCCCch
Confidence            9998764

>PRK09126 hypothetical protein; Provisional

Probab=97.82  E-value=0.0002  Score=72.21  Aligned_cols=99  Identities=23%  Similarity=0.360  Sum_probs=71.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-------hh-----------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-----------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~~-----------------------------------  254 (497)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.       .+                                   
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            469999999999999999999999999999864310       00                                   


Q ss_pred             --------ccCH---------------HHHHHHHHHH-HHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          255 --------LFTP---------------SLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       255 --------~~~~---------------~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                              .++.               .+.+.+.+.+ +..|++++.++++++++..++ .+ .+.+++|+++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~-~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-GA-QVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eE-EEEEcCCCEEEeCEEEE
Confidence                    0000               0111222222 346899999999999986533 33 57778899999999999


Q ss_pred             eccCcCC
Q 010917          311 GIGAKPT  317 (497)
Q Consensus       311 a~G~~p~  317 (497)
                      |.|..+.
T Consensus       162 AdG~~S~  168 (392)
T PRK09126        162 ADSRFSA  168 (392)
T ss_pred             eCCCCch
Confidence            9998764

>PLN02697 lycopene epsilon cyclase

Probab=97.82  E-value=0.0002  Score=74.09  Aligned_cols=98  Identities=23%  Similarity=0.376  Sum_probs=71.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc-----------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-----------------------------------------  255 (497)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++...+....                                         
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            369999999999999999999999999998642211000                                         


Q ss_pred             c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          256 F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       256 ~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      + ...+.+.+.+.+.+.|+++ .+.+|++++..+++ +..+.+.+|.++.++.||.|.|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence            0 0122344555567789998 56789998764333 3335667888999999999999876

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.82  E-value=9.6e-05  Score=76.60  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=58.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||+|++|+++|..|+++|+   +|+++|+.+...                                .....+.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~   59 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAI   59 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHH
Confidence            35689999999999999999999998   799998764210                                0112355


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.|++++++..+. .             ...+|.+|+++|..|..
T Consensus        60 l~~~gv~~~~~~~~~-~-------------~~~~D~Vv~s~Gi~~~~   92 (480)
T PRK01438         60 LEALGATVRLGPGPT-L-------------PEDTDLVVTSPGWRPDA   92 (480)
T ss_pred             HHHcCCEEEECCCcc-c-------------cCCCCEEEECCCcCCCC
Confidence            778899998875442 0             14589999999988763

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.82  E-value=7.2e-05  Score=82.27  Aligned_cols=90  Identities=20%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  287 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  287 (497)
                      +++|+|||||+.|+.+|..|++.|.+|+|+++.+.+...        ..+.+......+.+.+.||+++++....     
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d-----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD-----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence            578999999999999999999999999999987654221        1234444555567788899998874211     


Q ss_pred             CCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          288 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       288 ~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                             +.+.+.+...+|.||+|+|..+.
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCCC
Confidence                   12223334668999999999754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.81  E-value=2.4e-05  Score=80.19  Aligned_cols=40  Identities=20%  Similarity=0.399  Sum_probs=36.1

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ..++++|+|||||+|||+||++|.+.|+   +|+|+|..+...
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvG   51 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVG   51 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcC
Confidence            5667899999999999999999999999   799999988654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.80  E-value=0.00025  Score=71.39  Aligned_cols=98  Identities=27%  Similarity=0.355  Sum_probs=73.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh---------------------hc-c------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------RL-F------------------  256 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~-~------------------  256 (497)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                     .. +                  
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            4699999999999999999999999999997754311                     00 0                  


Q ss_pred             ------------------------CHHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917          257 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  311 (497)
Q Consensus       257 ------------------------~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a  311 (497)
                                              ...+.+.+.+.+++.| ++++ +.++++++..++ .+ .+++.+|+++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD-AA-TLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-eE-EEEECCCCEEEeeEEEEe
Confidence                                    1123344556667777 9999 888999875433 33 477888888999999999


Q ss_pred             ccCcCC
Q 010917          312 IGAKPT  317 (497)
Q Consensus       312 ~G~~p~  317 (497)
                      .|....
T Consensus       163 dG~~S~  168 (388)
T PRK07608        163 DGAHSW  168 (388)
T ss_pred             CCCCch
Confidence            998753

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.80  E-value=9.5e-06  Score=88.44  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY   97 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~   97 (497)
                      +|+|||||||||++|..|++.  |+   +|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~---~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAH---EVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCC---eEEEEecCCC
Confidence            799999999999999999998  56   8999999874

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.80  E-value=0.00026  Score=71.08  Aligned_cols=97  Identities=27%  Similarity=0.348  Sum_probs=72.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------h--ccC-------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--LFT-------------------------------  257 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~--~~~-------------------------------  257 (497)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..       +  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            489999999999999999999999999998853200       0  000                               


Q ss_pred             -------------------------HHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917          258 -------------------------PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  311 (497)
Q Consensus       258 -------------------------~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a  311 (497)
                                               ..+.+.+.+.+.+.| ++++.+++|++++..+ +.+ .+.+++|+++.+|.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEe
Confidence                                     112233445556666 9999999999998653 333 477889989999999999


Q ss_pred             ccCcC
Q 010917          312 IGAKP  316 (497)
Q Consensus       312 ~G~~p  316 (497)
                      .|...
T Consensus       159 dG~~S  163 (385)
T TIGR01988       159 DGANS  163 (385)
T ss_pred             CCCCC
Confidence            99865

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.80  E-value=6.3e-05  Score=80.01  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+||||||||..|.++|+.|+++|+   +|+|||+++
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl---~V~LvE~~d  104 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGL---RVGLVERED  104 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCC---EEEEEeccc
Confidence            345899999999999999999999998   899999985

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.79  E-value=0.00018  Score=71.15  Aligned_cols=100  Identities=29%  Similarity=0.393  Sum_probs=71.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      +|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...                                           
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            5999999999999999999999999999987221100                                           


Q ss_pred             -------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CC--cEEEcC
Q 010917          255 -------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDAD  306 (497)
Q Consensus       255 -------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D  306 (497)
                                               ..-..+.+.+.+.+++.|++++.++++..++.+.++....+... +|  +++.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                                     00124566777888889999999999999886654432233333 34  369999


Q ss_pred             EEEEeccCcCC
Q 010917          307 TIVIGIGAKPT  317 (497)
Q Consensus       307 ~vv~a~G~~p~  317 (497)
                      +||-|-|....
T Consensus       163 lvVgADG~~S~  173 (356)
T PF01494_consen  163 LVVGADGAHSK  173 (356)
T ss_dssp             EEEE-SGTT-H
T ss_pred             eeecccCcccc
Confidence            99999998753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08013 oxidoreductase; Provisional

Probab=97.79  E-value=0.00026  Score=71.62  Aligned_cols=99  Identities=25%  Similarity=0.326  Sum_probs=72.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------h--ccC-----------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------R--LFT-----------------------------  257 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~--~~~-----------------------------  257 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..        +  .+.                             
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            4799999999999999999999999999997643110        0  000                             


Q ss_pred             ---------------------------HHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 010917          258 ---------------------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  309 (497)
Q Consensus       258 ---------------------------~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv  309 (497)
                                                 ..+.+.+.+.+.+. ||+++.++++++++.++++  ..+++.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                                       01122233334443 7999999999999765443  35677899999999999


Q ss_pred             EeccCcCC
Q 010917          310 IGIGAKPT  317 (497)
Q Consensus       310 ~a~G~~p~  317 (497)
                      -|-|....
T Consensus       162 gADG~~S~  169 (400)
T PRK08013        162 GADGANSW  169 (400)
T ss_pred             EeCCCCcH
Confidence            99998753

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.78  E-value=0.00014  Score=73.38  Aligned_cols=92  Identities=12%  Similarity=0.174  Sum_probs=62.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHH-HhCCCcEEEEecCCcchhhc---c------CHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAA-VGWKLDTTIIFPENHLLQRL---F------TPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l-~~~g~~Vtlv~~~~~~~~~~---~------~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      .+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+..-.   .      -..+...+...+...+++++.+..+-. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            578999999999999999976 46799999999998764210   1      123445555556678888875543311 


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                               .+..++= ...+|.||+|+|..+.
T Consensus       117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ---------DLKMEEL-RNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence                     1111111 2368999999998853

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.77  E-value=0.00027  Score=71.31  Aligned_cols=108  Identities=18%  Similarity=0.274  Sum_probs=79.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------c-----------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------L-----------------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------~-----------------------  255 (497)
                      -.|+|||+|+.|.-+|..|++.|.+|.++++.+.+..+                  .                       
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            36999999999999999999999999999987322110                  0                       


Q ss_pred             --------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCC
Q 010917          256 --------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       256 --------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl  326 (497)
                              + -..+-+++.+..++.|++++.++++..+..++++.+..+ ..++.++.++.||.|.|...  .+.+.+++
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s--~l~~~lg~  160 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNS--ALARKLGL  160 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcch--HHHHHhCC
Confidence                    0 112345577778889999999999999987655655443 34447899999999999765  34444444


Q ss_pred             c
Q 010917          327 N  327 (497)
Q Consensus       327 ~  327 (497)
                      .
T Consensus       161 ~  161 (396)
T COG0644         161 K  161 (396)
T ss_pred             C
Confidence            4

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.76  E-value=0.00033  Score=70.64  Aligned_cols=99  Identities=22%  Similarity=0.337  Sum_probs=72.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch---------------h-------------hc-------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------Q-------------RL-------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------~-------------~~-------------  255 (497)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+...               +             ..             
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET   85 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence            479999999999999999999999999998764100               0             00             


Q ss_pred             ---------c---------------CHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          256 ---------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       256 ---------~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                               +               ...+.+.+.+.+++. |++++.++++++++..+++  ..+.+.+|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~  163 (391)
T PRK08020         86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIG  163 (391)
T ss_pred             EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEE
Confidence                     0               011223344445555 9999999999999755333  356778888999999999


Q ss_pred             eccCcCC
Q 010917          311 GIGAKPT  317 (497)
Q Consensus       311 a~G~~p~  317 (497)
                      |.|....
T Consensus       164 AdG~~S~  170 (391)
T PRK08020        164 ADGANSQ  170 (391)
T ss_pred             eCCCCch
Confidence            9998764

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.76  E-value=0.00045  Score=65.21  Aligned_cols=57  Identities=16%  Similarity=0.141  Sum_probs=40.0

Q ss_pred             cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          256 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       256 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      .......++++.-..-+-++.+++.|..+..-.+|.  .+...+|+.-.+|.||+|+-.
T Consensus       215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv--~l~~~~G~s~rFD~vViAth~  271 (447)
T COG2907         215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGV--VLVNADGESRRFDAVVIATHP  271 (447)
T ss_pred             cccchHHHHHHHhccccceeecCCceeeeeeCCCce--EEecCCCCccccceeeeecCh
Confidence            344445566555444444588999999998777774  355567888899999999754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.75  E-value=0.0003  Score=74.04  Aligned_cols=99  Identities=24%  Similarity=0.308  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  254 (497)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                         
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            457999999999999999999999999999977321100                                         


Q ss_pred             ---ccC-----------------HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEE
Q 010917          255 ---LFT-----------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV  309 (497)
Q Consensus       255 ---~~~-----------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vv  309 (497)
                         .++                 +.+.+.+.+.+.+ .|++++.++++++++.++++.  .++++  +|  +++.+|+||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence               000                 1122334444555 489999999999998765553  34443  56  479999999


Q ss_pred             EeccCcC
Q 010917          310 IGIGAKP  316 (497)
Q Consensus       310 ~a~G~~p  316 (497)
                      -|.|...
T Consensus       168 gADG~~S  174 (538)
T PRK06183        168 GCDGANS  174 (538)
T ss_pred             ecCCCch
Confidence            9999754

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.75  E-value=7.7e-05  Score=79.82  Aligned_cols=92  Identities=18%  Similarity=0.334  Sum_probs=70.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..        ..++..+.....+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            478999999999999999999999999999998876431        124566666667888999999999986521   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                        +     +.+.+ ....+|.|++|+|..+.
T Consensus       386 --~-----~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 --D-----ITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence              0     11211 13468999999998653

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.75  E-value=8.8e-05  Score=82.84  Aligned_cols=93  Identities=25%  Similarity=0.310  Sum_probs=68.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+...        ..+.++.....+.+++.||++++++.+..   
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---  505 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---  505 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC---
Confidence            3579999999999999999999999999999987654321        13566777777889999999999964411   


Q ss_pred             CCCCcEEEEEeCCC-cEEEcCEEEEeccCc-CC
Q 010917          287 GSDGRVAAVKLEDG-STIDADTIVIGIGAK-PT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g-~~i~~D~vv~a~G~~-p~  317 (497)
                             .+...+- ....+|.||+|+|.. |.
T Consensus       506 -------~~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        506 -------TFTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             -------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence                   1111111 124589999999984 54

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.75  E-value=2.8e-05  Score=77.59  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+||+|||||.||..||...++.|.   ++.|+.-+.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~   37 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNL   37 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCC---eEEEEEcCC
Confidence            4899999999999999999999997   677776654

>PRK06753 hypothetical protein; Provisional

Probab=97.74  E-value=0.00024  Score=71.06  Aligned_cols=98  Identities=14%  Similarity=0.221  Sum_probs=69.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----ccCHH----------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPS----------------------------------  259 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----~~~~~----------------------------------  259 (497)
                      +|+|||||+.|+-+|..|++.|.+|+|+++.+.+...    .+.+.                                  
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6999999999999999999999999999987542110    00000                                  


Q ss_pred             --------------HHHHHHHHHHH--CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          260 --------------LAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       260 --------------~~~~~~~~l~~--~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                    -...+.+.|.+  .+.++++++++++++.. ++.+ .+++++|+++.+|.||-|-|....
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchH
Confidence                          01112222322  24678899999999854 3333 577889999999999999997653

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.74  E-value=0.00033  Score=70.44  Aligned_cols=100  Identities=23%  Similarity=0.316  Sum_probs=71.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC--cch---h---h--ccCH----------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---Q---R--LFTP----------------------------  258 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~--~~~---~---~--~~~~----------------------------  258 (497)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+  .+.   .   +  .+.+                            
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            369999999999999999999999999999653  100   0   0  0000                            


Q ss_pred             ---------------------------HHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          259 ---------------------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       259 ---------------------------~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                                                 .+...+.+.+++ .|++++.++++++++.++++ + .+++++|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEE
Confidence                                       001112222233 37999999999999865443 3 57888999999999999


Q ss_pred             eccCcCCC
Q 010917          311 GIGAKPTV  318 (497)
Q Consensus       311 a~G~~p~~  318 (497)
                      |.|.....
T Consensus       162 ADG~~S~v  169 (384)
T PRK08849        162 ADGANSQV  169 (384)
T ss_pred             ecCCCchh
Confidence            99997653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.74  E-value=0.00038  Score=72.31  Aligned_cols=98  Identities=19%  Similarity=0.329  Sum_probs=71.0

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch------------------hh-------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR-------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------~~-------------------------  254 (497)
                      .|+|||+|..|+++|..+++.|.+|.++++.....                  ..                         
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            48999999999999999999999999998652110                  00                         


Q ss_pred             ----------ccCH-HHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          255 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       255 ----------~~~~-~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                                .+|+ .+...+++.+++. |+.++.+ .++++...+++.+.+|.+.+|..+.||.||+|+|.-.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                      0000 1123455555665 7888766 5666654335678889999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.74  E-value=9.1e-05  Score=76.43  Aligned_cols=91  Identities=20%  Similarity=0.314  Sum_probs=67.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.++.....+.+++.||+++.++.+.. + 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  219 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-  219 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence            4679999999999999999999999999999988765311        13445556666778899999999986531 1 


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                              +.. +.....+|.||+|+|..+
T Consensus       220 --------~~~-~~~~~~~d~vvlAtGa~~  240 (471)
T PRK12810        220 --------ITA-EELLAEYDAVFLGTGAYK  240 (471)
T ss_pred             --------CCH-HHHHhhCCEEEEecCCCC
Confidence                    000 111357999999999973

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.73  E-value=0.00037  Score=73.50  Aligned_cols=102  Identities=22%  Similarity=0.292  Sum_probs=72.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------c------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------  255 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------~------  255 (497)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                  .      
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            357999999999999999999999999999877422100                                  0      


Q ss_pred             -------------------c-CHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEecc
Q 010917          256 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG  313 (497)
Q Consensus       256 -------------------~-~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vv~a~G  313 (497)
                                         . ...+.+.+.+.+.+. ++++++++++++++.++++....+...+++ ++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                               0 001223444555554 799999999999987644433334444554 699999999999


Q ss_pred             CcCC
Q 010917          314 AKPT  317 (497)
Q Consensus       314 ~~p~  317 (497)
                      ....
T Consensus       183 ~~S~  186 (547)
T PRK08132        183 ARSP  186 (547)
T ss_pred             CCcH
Confidence            8764

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.73  E-value=0.00017  Score=73.30  Aligned_cols=59  Identities=20%  Similarity=0.271  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeccCcCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPT  317 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~~D~vv~a~G~~p~  317 (497)
                      +..+.-.......++|-++.+.++|+++..+ ++ +.+|...|.+     ++.++.||-|+|.-.+
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d  226 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD  226 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence            3455566667778999999999999999864 44 7778776532     5899999999997654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.72  E-value=0.00035  Score=70.32  Aligned_cols=97  Identities=22%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------c--------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------L--------------  255 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------~--------------  255 (497)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                            .              
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            4899999999999999999999999999976432100                            0              


Q ss_pred             -c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          256 -F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       256 -~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                       + ...+.+.+.+.+.+.|++++ ..++..++..+ +....+.+++|+++.+|.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0 01233445556677799886 45788887542 333457778888999999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.72  E-value=5.7e-05  Score=75.44  Aligned_cols=105  Identities=21%  Similarity=0.193  Sum_probs=63.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccC-HH-----------------HHHHHHHHHHHCCcEEEcCC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT-PS-----------------LAQRYEQLYQQNGVKFVKGA  279 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~-~~-----------------~~~~~~~~l~~~GV~i~~~~  279 (497)
                      +|+|||||..|+|+|..|++.|.+|+++++.+..+..... ..                 ....+.+.++..|..+....
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~a   81 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITAA   81 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeehh
Confidence            6999999999999999999999999999977654321100 00                 01123456666665555444


Q ss_pred             eEEEEEeCCCCcEE------------------EEEeCCC--cEE-EcCEEEEeccCcCCCcchhhc
Q 010917          280 SIKNLEAGSDGRVA------------------AVKLEDG--STI-DADTIVIGIGAKPTVSPFERV  324 (497)
Q Consensus       280 ~v~~i~~~~~~~v~------------------~v~~~~g--~~i-~~D~vv~a~G~~p~~~~~~~~  324 (497)
                      ....+..  .+.+.                  .+....+  +.+ ..|.||+|+|..++..+.+.+
T Consensus        82 d~~~Ipa--gg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~~La~~L  145 (433)
T TIGR00137        82 DRHAVPA--GGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSPALSEDL  145 (433)
T ss_pred             hhhCCCC--CceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccHHHHHHH
Confidence            4443321  11100                  0011122  123 467999999998887775543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.72  E-value=0.00078  Score=67.95  Aligned_cols=135  Identities=16%  Similarity=0.237  Sum_probs=87.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh----------------------------------------h
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R  254 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------------~  254 (497)
                      ..++|+|||+|++|+-.|..|.+.|.++++++|.+.+..                                        +
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            368899999999999999999999999999998843221                                        0


Q ss_pred             c-cCH-HHHHHHHHHHHHCCc--EEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeccCc--CCCcchhhc
Q 010917          255 L-FTP-SLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV  324 (497)
Q Consensus       255 ~-~~~-~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vv~a~G~~--p~~~~~~~~  324 (497)
                      . .+. ++.++++...+.-++  .+.+++.+.+++...+|. -.|.+.++    ++.-+|.|++|+|.-  |+.+.....
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence            1 111 466777777777775  577788888887654222 13333332    467799999999987  554444433


Q ss_pred             CCcccCCCEEecCCCCC----CCCcEEEec
Q 010917          325 GLNSSVGGIQVDGQFRT----RMPGIFAIG  350 (497)
Q Consensus       325 gl~~~~g~i~vd~~~~t----~~~~iya~G  350 (497)
                      +++.=.|.+.---.++.    ....|.++|
T Consensus       164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG  193 (448)
T KOG1399|consen  164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVG  193 (448)
T ss_pred             chhhcCCcceehhhccCcccccCceEEEEC
Confidence            33222333332222222    236688888

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.71  E-value=0.00013  Score=77.30  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=29.1

Q ss_pred             EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        63 VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      |||||+|.|||+||..+++.|.   +|+|+||.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~---~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGY---HVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCC---CEEEEEecC
Confidence            6999999999999999999987   899999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.71  E-value=0.00035  Score=70.76  Aligned_cols=98  Identities=22%  Similarity=0.359  Sum_probs=70.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccc-------------hh-------h------c--------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-------------LQ-------R------L--------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~-------------~~-------~------~--------------  255 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++. +..             .+       .      .              
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~   84 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW   84 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence            47999999999999999999999999999974 110             00       0      0              


Q ss_pred             ---------cC---------------HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          256 ---------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       256 ---------~~---------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                               ++               ..+...+.+.+.+ .||+++.++++++++.++++  ..+.+++|+++.+|+||.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvIg  162 (405)
T PRK08850         85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVVG  162 (405)
T ss_pred             eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEEE
Confidence                     00               0011223333334 47999999999999765333  357788999999999999


Q ss_pred             eccCcC
Q 010917          311 GIGAKP  316 (497)
Q Consensus       311 a~G~~p  316 (497)
                      |.|...
T Consensus       163 ADG~~S  168 (405)
T PRK08850        163 ADGANS  168 (405)
T ss_pred             eCCCCC
Confidence            999765

>PLN02661 Putative thiazole synthesis

Probab=97.69  E-value=0.0011  Score=64.39  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcchhh-------------------c-------cC-----------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR-------------------L-------FT-----------  257 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~-------------------~-------~~-----------  257 (497)
                      .-.|+|||+|..|+-+|..|++. |.+|+++++...+...                   .       ++           
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha  171 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA  171 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence            35799999999999999999976 8899999987543110                   0       00           


Q ss_pred             HHHHHHHH-HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC------C--C------cEEEcCEEEEeccCcC
Q 010917          258 PSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTIVIGIGAKP  316 (497)
Q Consensus       258 ~~~~~~~~-~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~------~--g------~~i~~D~vv~a~G~~p  316 (497)
                      ..+...+. +.+++.||+++.++.+.++..+ ++++.++...      +  +      ..+.++.||+|||..+
T Consensus       172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence            01111222 3444578999999999998754 5667676631      1  1      2689999999999665

>PRK07208 hypothetical protein; Provisional

Probab=97.67  E-value=5.3e-05  Score=78.55  Aligned_cols=57  Identities=28%  Similarity=0.399  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe--CCCc--EEEcCEEEEeccC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIVIGIGA  314 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~--~~g~--~i~~D~vv~a~G~  314 (497)
                      ..+.+.+.+.+++.|+++++++.|++|...+++.+..+..  .+|+  ++.+|.||+++..
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~  278 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL  278 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence            4567788888899999999999999998765554444443  2453  6899999999764

>PRK10015 oxidoreductase; Provisional

Probab=97.66  E-value=0.00058  Score=69.52  Aligned_cols=98  Identities=19%  Similarity=0.306  Sum_probs=71.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch------------------hhc-----------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL-----------------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------~~~-----------------------  255 (497)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+.                  +.+                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            369999999999999999999999999998763210                  000                       


Q ss_pred             --c------------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          256 --F------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       256 --~------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                        +                  -..+-.++.+..++.|++++.+++|+++... ++.+..+.. ++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence              0                  0012234556667889999999999998754 455544543 44679999999999975


Q ss_pred             C
Q 010917          316 P  316 (497)
Q Consensus       316 p  316 (497)
                      .
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            4

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.66  E-value=0.0018  Score=66.02  Aligned_cols=136  Identities=21%  Similarity=0.303  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhh-----------------------cc--------CHHHHHH
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR-----------------------LF--------TPSLAQR  263 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~-----------------------~~--------~~~~~~~  263 (497)
                      ..+|+|||+|++|+-+|..|.+.|.. +.++++.+.+...                       .+        ...+.++
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y   87 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY   87 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence            46799999999999999999999998 9999988432110                       00        0125677


Q ss_pred             HHHHHHHCCcEE--EcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeccCc--CCCcchhhcCCcccCCCEEecC
Q 010917          264 YEQLYQQNGVKF--VKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAK--PTVSPFERVGLNSSVGGIQVDG  337 (497)
Q Consensus       264 ~~~~l~~~GV~i--~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vv~a~G~~--p~~~~~~~~gl~~~~g~i~vd~  337 (497)
                      +.+.+++.++..  ..++.|..++.++++..-.|+++++.+  +.+|.||+|+|.-  |+..-+  .|++.-.|.+.--.
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--~G~~~f~g~~~HS~  165 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--AGLDEFKGRILHSA  165 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--CCccCCCceEEchh
Confidence            888888776543  344556556655666666788888765  5599999999983  332222  23332223322211


Q ss_pred             C----CCCCCCcEEEecccc
Q 010917          338 Q----FRTRMPGIFAIGDVA  353 (497)
Q Consensus       338 ~----~~t~~~~iya~GD~~  353 (497)
                      +    ..-.-++|-+||--+
T Consensus       166 ~~~~~~~~~GKrV~VIG~Ga  185 (443)
T COG2072         166 DWPNPEDLRGKRVLVIGAGA  185 (443)
T ss_pred             cCCCccccCCCeEEEECCCc
Confidence            1    222457788888443

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.64  E-value=0.00055  Score=68.53  Aligned_cols=98  Identities=19%  Similarity=0.272  Sum_probs=70.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC----cc----------------hhh-----------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQR-----------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~----~~----------------~~~-----------------------  254 (497)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+    .+                +..                       
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            58999999999999999999999999999641    10                000                       


Q ss_pred             ------------------ccCHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          255 ------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       255 ------------------~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                                        ..-..+.+.+.+.+.+. +++++.+++++++...+++ + .+.++++ ++.+|+||-|-|..
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCC
Confidence                              00012334445555555 4899999999998765443 3 4677766 89999999999987


Q ss_pred             CCC
Q 010917          316 PTV  318 (497)
Q Consensus       316 p~~  318 (497)
                      ...
T Consensus       160 S~v  162 (374)
T PRK06617        160 SKV  162 (374)
T ss_pred             chh
Confidence            543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.63  E-value=0.00015  Score=77.96  Aligned_cols=91  Identities=21%  Similarity=0.352  Sum_probs=67.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..        ..++.++.....+.+++.||+++.++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            468999999999999999999999999999998765321        113455555566778889999999986521   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                        +     +.+.+ ....+|.|++|+|..+
T Consensus       403 --~-----i~~~~-~~~~~DavilAtGa~~  424 (654)
T PRK12769        403 --D-----ISLES-LLEDYDAVFVGVGTYR  424 (654)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence              0     11111 1246999999999864

>PRK06185 hypothetical protein; Provisional

Probab=97.63  E-value=0.00066  Score=68.82  Aligned_cols=109  Identities=25%  Similarity=0.315  Sum_probs=74.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh----------------------h-------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R-------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------~-------------------  254 (497)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+..                      .                   
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            45799999999999999999999999999997632100                      0                   


Q ss_pred             ---c----------------cCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEE--EeCCCc-EEEcCEEEEe
Q 010917          255 ---L----------------FTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAV--KLEDGS-TIDADTIVIG  311 (497)
Q Consensus       255 ---~----------------~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v--~~~~g~-~i~~D~vv~a  311 (497)
                         .                ....+.+.+.+.+.+ .|++++.+++++++... ++.+..+  ...+|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence               0                001122334444444 48999999999999765 4444433  344664 7999999999


Q ss_pred             ccCcCCCcchhhcCCc
Q 010917          312 IGAKPTVSPFERVGLN  327 (497)
Q Consensus       312 ~G~~p~~~~~~~~gl~  327 (497)
                      .|....  +-+.+++.
T Consensus       165 dG~~S~--vr~~~gi~  178 (407)
T PRK06185        165 DGRHSR--VRALAGLE  178 (407)
T ss_pred             CCCchH--HHHHcCCC
Confidence            998753  33444443

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.63  E-value=0.00015  Score=77.65  Aligned_cols=92  Identities=21%  Similarity=0.275  Sum_probs=67.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-------hh-ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.|+++++++.+. .+ 
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d-  269 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD-  269 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence            46899999999999999999999999999999886542       11 1345556666677889999999887541 11 


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                              +.+.+. ...+|.||+|+|..+.
T Consensus       270 --------v~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        270 --------ITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence                    112221 2359999999998753

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.62  E-value=4.6e-05  Score=77.51  Aligned_cols=107  Identities=24%  Similarity=0.325  Sum_probs=27.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      .|+|||||+.|+-.|..+++.|.+|.|+++.+.+...                                           
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            4899999999999999999999999999988543110                                           


Q ss_pred             -----ccCHH-HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEeccCcCCCcchhhcC
Q 010917          255 -----LFTPS-LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       255 -----~~~~~-~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                           .+++. +...+.+.+++.||++++++.+.++..+ ++++.+|.+.+   ..++.++.+|-|+|-   -+++..+|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~aG  156 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALAG  156 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---cccccccc
Confidence                 01111 1223556677889999999999999864 66788888765   468999999999993   24555555


Q ss_pred             Ccc
Q 010917          326 LNS  328 (497)
Q Consensus       326 l~~  328 (497)
                      .+.
T Consensus       157 ~~~  159 (428)
T PF12831_consen  157 APY  159 (428)
T ss_dssp             ---
T ss_pred             ccc
Confidence            544

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.62  E-value=0.00078  Score=59.96  Aligned_cols=103  Identities=21%  Similarity=0.253  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc-------------------------------------CH
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------------------------------------TP  258 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~-------------------------------------~~  258 (497)
                      ...|+|||+|+.|+-+|..|++.|.+|.++++...+.....                                     ..
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~   96 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV   96 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence            45799999999999999999999999999998743321100                                     01


Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeccCcCCC
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vv~a~G~~p~~  318 (497)
                      ++...+....-+.|++++....++.+--.+++++.++..+           |--.+.+..||-|||.....
T Consensus        97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence            1223333333459999999999998765555788877663           22479999999999987653

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.62  E-value=0.00078  Score=68.11  Aligned_cols=99  Identities=16%  Similarity=0.244  Sum_probs=69.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  254 (497)
                      ++|+|||||..|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            68999999999999999999999999999977321000                                          


Q ss_pred             -cc-------------------C-HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEE
Q 010917          255 -LF-------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  309 (497)
Q Consensus       255 -~~-------------------~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vv  309 (497)
                       .+                   . ..+.+.+.+.+.+ .|+++++++++++++..+++ + .+++   .+++++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence             00                   0 1122334444444 47999999999999864333 2 3333   344679999999


Q ss_pred             EeccCcCC
Q 010917          310 IGIGAKPT  317 (497)
Q Consensus       310 ~a~G~~p~  317 (497)
                      -|-|....
T Consensus       161 gADG~~S~  168 (400)
T PRK06475        161 ACDGVWSM  168 (400)
T ss_pred             ECCCccHh
Confidence            99998653

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.61  E-value=0.00031  Score=69.98  Aligned_cols=94  Identities=22%  Similarity=0.328  Sum_probs=64.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcchhh----c----cCHHHHH-------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR----L----FTPSLAQ-------------------------  262 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~----~----~~~~~~~-------------------------  262 (497)
                      .|+|||+|..|+.+|..|++.  |.+|.++++.+.+.+.    +    .++....                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            389999999999999999987  9999999987633221    0    1111100                         


Q ss_pred             ---------HHHHH-HHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          263 ---------RYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       263 ---------~~~~~-l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                               .+.+. +++.+..++.+.+|.+++.  +    .+++.+|+++.+|.||.|.|..+.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence                     11111 2333444677888888853  2    255588999999999999998864

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.60  E-value=6.8e-05  Score=77.13  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=32.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ++|+|||||+|||+||+.|++.|. ..+|+|+|+++...
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCc
Confidence            479999999999999999999882 23899999997653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.60  E-value=0.0007  Score=76.05  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc----------CHHHHHHHHHHHHHC-CcEEEcCCeEEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL  284 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~----------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i  284 (497)
                      ..+|+|||+|+.|+..|..+++.|.+|++++..+.+.....          ..++...+.+.+++. +|+++.+++|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            46799999999999999999999999999998765432111          123333444555555 5999999999887


Q ss_pred             EeCCCCcEEEEE-eC-------CC------cEEEcCEEEEeccCcCCC
Q 010917          285 EAGSDGRVAAVK-LE-------DG------STIDADTIVIGIGAKPTV  318 (497)
Q Consensus       285 ~~~~~~~v~~v~-~~-------~g------~~i~~D~vv~a~G~~p~~  318 (497)
                      ..  ++.+..+. ..       ++      .++.+|.||+|+|..+..
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            63  22221111 00       11      268999999999998754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02529 lysine-specific histone demethylase 1

Probab=97.59  E-value=9.8e-05  Score=78.92  Aligned_cols=40  Identities=23%  Similarity=0.377  Sum_probs=35.4

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ....++|+|||||+|||+||..|+++|+   +|+|+|+.+...
T Consensus       157 ~~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G  196 (738)
T PLN02529        157 EGTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG  196 (738)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence            4456899999999999999999999998   799999987543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.59  E-value=0.00076  Score=68.05  Aligned_cols=107  Identities=27%  Similarity=0.392  Sum_probs=74.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCC-c-------------chhh---------c---------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------LLQR---------L---------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~-~-------------~~~~---------~---------------  255 (497)
                      -+|+|||+|+.|+-+|..|++.   |.+|+|+++.. .             +.+.         .               
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4699999999999999999998   99999999831 1             0000         0               


Q ss_pred             -----------cC---------------HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 010917          256 -----------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  308 (497)
Q Consensus       256 -----------~~---------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~v  308 (497)
                                 +.               ..+.+.+.+.+.+ .|++++.+++++++...++ .+ .+++++|.++.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQG-SV-RVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC-eE-EEEECCCCEEEeCEE
Confidence                       00               0112233444444 4799999999999875433 33 477788888999999


Q ss_pred             EEeccCcCCCcchhhcCCc
Q 010917          309 VIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       309 v~a~G~~p~~~~~~~~gl~  327 (497)
                      |.|.|....  +.+.+++.
T Consensus       162 I~AdG~~S~--vr~~~~~~  178 (395)
T PRK05732        162 VAADGSHSA--LREALGID  178 (395)
T ss_pred             EEecCCChh--hHHhhCCC
Confidence            999998763  44444443

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.57  E-value=0.00071  Score=68.11  Aligned_cols=98  Identities=24%  Similarity=0.334  Sum_probs=70.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh---------------------h-----------------c---
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------R-----------------L---  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~-----------------~---  255 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....                     .                 .   
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~   87 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI   87 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence            4799999999999999999999999999998632100                     0                 0   


Q ss_pred             ------c---------------CHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917          256 ------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  313 (497)
Q Consensus       256 ------~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G  313 (497)
                            +               ...+.+.+.+.+.+. ++. +.+++|.+++..+++ + .+++++|+++.+|.||.|.|
T Consensus        88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG  164 (388)
T PRK07494         88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGADG  164 (388)
T ss_pred             CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEecC
Confidence                  0               011233344445554 466 778999999765433 3 47788888999999999999


Q ss_pred             CcCC
Q 010917          314 AKPT  317 (497)
Q Consensus       314 ~~p~  317 (497)
                      ....
T Consensus       165 ~~S~  168 (388)
T PRK07494        165 RNSP  168 (388)
T ss_pred             CCch
Confidence            8753

>PRK09897 hypothetical protein; Provisional

Probab=97.56  E-value=0.0013  Score=68.29  Aligned_cols=99  Identities=16%  Similarity=0.181  Sum_probs=66.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchhh----------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR----------------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~----------------------------------------  254 (497)
                      ++|+|||+|+.|+-+|..|.+.+.  +|+|+++...+...                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            479999999999999999987654  79999985322110                                        


Q ss_pred             --------------c-----cCHHHHHH---HHHHHHHCC--cEEEcCCeEEEEEeCCCCcEEEEEeCC-CcEEEcCEEE
Q 010917          255 --------------L-----FTPSLAQR---YEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIV  309 (497)
Q Consensus       255 --------------~-----~~~~~~~~---~~~~l~~~G--V~i~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~~D~vv  309 (497)
                                    +     ++..+.+.   +.+.+.+.|  +.++.+++|++++..+++ + .+.+.+ +..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-V-MLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEECCCCeEEEcCEEE
Confidence                          0     00011111   222234555  788889899999865443 2 466655 4689999999


Q ss_pred             EeccCcCC
Q 010917          310 IGIGAKPT  317 (497)
Q Consensus       310 ~a~G~~p~  317 (497)
                      +|+|..++
T Consensus       160 LAtGh~~p  167 (534)
T PRK09897        160 IATGHVWP  167 (534)
T ss_pred             ECCCCCCC
Confidence            99997543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.54  E-value=0.00052  Score=69.74  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=67.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcchhhc----cCH-------------H--------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----FTP-------------S--------------------  259 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~----~~~-------------~--------------------  259 (497)
                      +|+|||+|..|+-+|..|++.| .+|+|+++.+.+....    +.+             .                    
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 5999999875431100    000             0                    


Q ss_pred             ---------------------HHHHHHHHHHHC--CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          260 ---------------------LAQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       260 ---------------------~~~~~~~~l~~~--GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                                           ....+.+.|.+.  ++.++.+++|++++..+++  ..+.+.+|+++.+|.||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                 001122222221  4567889999999865444  357788999999999999999764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.54  E-value=0.00035  Score=79.69  Aligned_cols=36  Identities=31%  Similarity=0.377  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...||||||+|.||++||.++++.|.   +|+|+||.+.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~  443 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAK  443 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCC
Confidence            35899999999999999999999987   8999999864

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.53  E-value=0.00021  Score=73.02  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=27.9

Q ss_pred             EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           65 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        65 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      |||+|.||++||.++++.|.   +|+|+||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga---~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGA---SVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            79999999999999999987   8999999863

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.52  E-value=0.0001  Score=73.13  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +++|+|||||++|++||..|+++|+   +|+|+|+.+.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~   36 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV   36 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence            4699999999999999999999998   8999997654

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.52  E-value=0.0011  Score=68.90  Aligned_cols=108  Identities=19%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------c---------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------L---------  255 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------~---------  255 (497)
                      .-.|+|||+|..|+-.|..+++.|.+|.|+++.+.+...                               .         
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d  140 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND  140 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence            346999999999999999999999999999876421100                               0         


Q ss_pred             -----------------------------------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          256 -----------------------------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       256 -----------------------------------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                                                                     .+..+...+.+.+++.||++++++.++++... 
T Consensus       141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-  219 (506)
T PRK06481        141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK-  219 (506)
T ss_pred             HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-
Confidence                                                           00113344556667889999999999999753 


Q ss_pred             CCcEEEEEe--CCC--cEEEcCEEEEecc-CcCCCcchhhc
Q 010917          289 DGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFERV  324 (497)
Q Consensus       289 ~~~v~~v~~--~~g--~~i~~D~vv~a~G-~~p~~~~~~~~  324 (497)
                      ++++..+..  .++  .++.++.||+|+| +..|.+++++.
T Consensus       220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~  260 (506)
T PRK06481        220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAKY  260 (506)
T ss_pred             CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHHh
Confidence            577766655  343  3689999999997 67776665554

>TIGR00275 flavoprotein, HI0933 family

Probab=97.50  E-value=0.00073  Score=68.14  Aligned_cols=94  Identities=17%  Similarity=0.352  Sum_probs=68.4

Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------c----------------------
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------L----------------------  255 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------~----------------------  255 (497)
                      +|||+|..|+-+|..+++.|.+|+++++.+.+...                      .                      
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            58999999999999999999999999876432210                      0                      


Q ss_pred             ----------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917          256 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  313 (497)
Q Consensus       256 ----------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G  313 (497)
                                            ....+.+.+.+.+++.|+++++++.+.+++.. ++. ..+.+ +++++.+|.||+|+|
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCC
Confidence                                  00123344566677889999999999999754 332 34555 566799999999999


Q ss_pred             CcC
Q 010917          314 AKP  316 (497)
Q Consensus       314 ~~p  316 (497)
                      ...
T Consensus       158 ~~s  160 (400)
T TIGR00275       158 GLS  160 (400)
T ss_pred             Ccc
Confidence            753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06126 hypothetical protein; Provisional

Probab=97.49  E-value=0.0012  Score=69.58  Aligned_cols=101  Identities=25%  Similarity=0.332  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  254 (497)
                      ..+|+|||+|+.|+-+|..|++.|.+|+|+++.+.....                                         
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            457999999999999999999999999999977321000                                         


Q ss_pred             -------------c----------------------cC-HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 010917          255 -------------L----------------------FT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL  297 (497)
Q Consensus       255 -------------~----------------------~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~  297 (497)
                                   .                      .+ ..+...+.+.+++ .|+++++++++++++.++++....+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~  166 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED  166 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence                         0                      00 0122233444444 489999999999998654432222221


Q ss_pred             -CCCc--EEEcCEEEEeccCcC
Q 010917          298 -EDGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       298 -~~g~--~i~~D~vv~a~G~~p  316 (497)
                       .+|+  ++.+|.||.|.|...
T Consensus       167 ~~~g~~~~i~ad~vVgADG~~S  188 (545)
T PRK06126        167 LDGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             CCCCcEEEEEEEEEEecCCcch
Confidence             3453  689999999999764

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.48  E-value=0.0012  Score=67.61  Aligned_cols=63  Identities=14%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeccC-cCCCcchhh
Q 010917          261 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA-KPTVSPFER  323 (497)
Q Consensus       261 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vv~a~G~-~p~~~~~~~  323 (497)
                      ...+.+.+++.|+++++++.++++..++++++..+...  +++  .+.++.||+|+|. ..|.++++.
T Consensus       133 ~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~  200 (439)
T TIGR01813       133 VQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK  200 (439)
T ss_pred             HHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence            34455666788999999999999987656677666553  343  4789999999994 555555444

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.00013  Score=73.10  Aligned_cols=36  Identities=19%  Similarity=0.199  Sum_probs=33.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      +||+|+|||.|||+||+.|+++|+   +|||+|..+...
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~G   36 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLG   36 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccC
Confidence            489999999999999999999999   899999998753

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.46  E-value=0.0017  Score=65.48  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=70.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc------------------hhh------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQR------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~------------------~~~------------------------  254 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+..                  +.+                        
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            46999999999999999999999999999987531                  000                        


Q ss_pred             ----cc-------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeccC
Q 010917          255 ----LF-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  314 (497)
Q Consensus       255 ----~~-------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vv~a~G~  314 (497)
                          .+             -..+.+.+.+...+.|+++++++++++++..++.. ..|++ .+|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~  161 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCC
Confidence                00             01222334444467899999999999987522222 24555 4664  6899999999998


Q ss_pred             cCC
Q 010917          315 KPT  317 (497)
Q Consensus       315 ~p~  317 (497)
                      ...
T Consensus       162 ~S~  164 (392)
T PRK08243        162 HGV  164 (392)
T ss_pred             CCc
Confidence            754

>PLN02268 probable polyamine oxidase

Probab=97.45  E-value=0.00014  Score=74.47  Aligned_cols=36  Identities=19%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ++|+|||||.|||+||+.|.+.|+   +|+|+|+.+...
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCC
Confidence            489999999999999999999988   899999998764

>PLN02576 protoporphyrinogen oxidase

Probab=97.45  E-value=0.00016  Score=75.31  Aligned_cols=40  Identities=18%  Similarity=0.308  Sum_probs=34.9

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP   99 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~   99 (497)
                      +...++|+|||||++||+||+.|.+. |+   +|+|+|+++...
T Consensus         9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG   49 (496)
T PLN02576          9 AASSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG   49 (496)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence            34457999999999999999999999 87   899999997653

>PLN02985 squalene monooxygenase

Probab=97.45  E-value=0.00017  Score=74.99  Aligned_cols=38  Identities=18%  Similarity=0.414  Sum_probs=34.1

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ....+||+|||||++|+++|..|++.|+   +|+|+|+...
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~~   77 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDLR   77 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcCC
Confidence            4556899999999999999999999998   8999999753

>PRK13984 putative oxidoreductase; Provisional

Probab=97.45  E-value=0.00037  Score=74.41  Aligned_cols=92  Identities=18%  Similarity=0.213  Sum_probs=67.5

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  285 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  285 (497)
                      ..+++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...        .+..++.....+.+++.|++++.++.+.. +
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~  359 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK-D  359 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC-c
Confidence            35788999999999999999999999999999887654210        12344555556778899999999977632 0


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          286 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       286 ~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                               +..++ ....+|.||+|+|..+
T Consensus       360 ---------~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        360 ---------IPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             ---------CCHHH-HHhcCCEEEEEcCcCC
Confidence                     11111 1357999999999864

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.44  E-value=0.0018  Score=66.24  Aligned_cols=100  Identities=21%  Similarity=0.324  Sum_probs=71.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCC--cch-------------------hh------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL-------------------QR------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~----~g~~Vtlv~~~~--~~~-------------------~~------------------  254 (497)
                      .|+|||+|+.|+-+|..|++    .|.+|+++++.+  ...                   ++                  
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            48999999999999999998    799999999832  110                   00                  


Q ss_pred             ------------------ccC--------------HHHHHHHHHHHHHCC---cEEEcCCeEEEEEeC-----CCCcEEE
Q 010917          255 ------------------LFT--------------PSLAQRYEQLYQQNG---VKFVKGASIKNLEAG-----SDGRVAA  294 (497)
Q Consensus       255 ------------------~~~--------------~~~~~~~~~~l~~~G---V~i~~~~~v~~i~~~-----~~~~v~~  294 (497)
                                        .++              ..+...+.+.+++.+   ++++.++++.+++..     +++.-..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                              000              112333455556654   999999999999642     1222246


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCC
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      +++.+|+++.+|+||-|-|....
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCCh
Confidence            78899999999999999998764

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN02568 polyamine oxidase

Probab=97.43  E-value=0.00018  Score=74.99  Aligned_cols=43  Identities=21%  Similarity=0.173  Sum_probs=35.1

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCC--CCCcEEEEcCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAP   99 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~--~~~~V~lie~~~~~~   99 (497)
                      +++.++|+|||||+|||+||..|.+.|.  +..+|+|+|+.....
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            4556899999999999999999999871  123899999987653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.41  E-value=0.0021  Score=55.57  Aligned_cols=41  Identities=29%  Similarity=0.515  Sum_probs=31.8

Q ss_pred             CcEEE-cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          272 GVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       272 GV~i~-~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      |+++. ...+|+.+...+++.  .+.+.+|..+.+|.||+|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence            54443 355888998776553  578899999999999999995

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.40  E-value=0.00046  Score=72.93  Aligned_cols=92  Identities=21%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeE-EEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASI-KNL  284 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v-~~i  284 (497)
                      ..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..        ..++.+....-.+.+++.|++++.++.+ ..+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            4678999999999999999999999999999997765421        1123344444455677899999988765 332


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ...            .....+|.|++|+|..+.
T Consensus       215 ~~~------------~~~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        215 TLE------------QLEGEFDAVFVAIGAQLG  235 (564)
T ss_pred             CHH------------HHHhhCCEEEEeeCCCCC
Confidence            210            011248999999998753

>PRK06996 hypothetical protein; Provisional

Probab=97.39  E-value=0.0014  Score=66.23  Aligned_cols=99  Identities=18%  Similarity=0.257  Sum_probs=72.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCC----CcEEEEecCCcc------------------hhh------------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHL------------------LQR------------------  254 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g----~~Vtlv~~~~~~------------------~~~------------------  254 (497)
                      ...+|+|||||+.|+-+|..|++.|    .+|+++++.+..                  +..                  
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   89 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ   89 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence            3457999999999999999999987    469999875210                  000                  


Q ss_pred             ---------------------cc-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEE
Q 010917          255 ---------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV  309 (497)
Q Consensus       255 ---------------------~~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vv  309 (497)
                                           .. -..+.+.+.+.+++.|++++.++++++++..+++.  .+.+.++   +++.+|+||
T Consensus        90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvI  167 (398)
T PRK06996         90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAV  167 (398)
T ss_pred             CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEE
Confidence                                 00 12345667777788899999999999997654442  4566654   589999999


Q ss_pred             EeccCc
Q 010917          310 IGIGAK  315 (497)
Q Consensus       310 ~a~G~~  315 (497)
                      -|-|..
T Consensus       168 gADG~~  173 (398)
T PRK06996        168 QAEGGL  173 (398)
T ss_pred             ECCCCC
Confidence            999954

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.38  E-value=0.00052  Score=66.96  Aligned_cols=55  Identities=15%  Similarity=0.322  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  313 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G  313 (497)
                      ..++..+.+-+++.|-+|.+...|++|.-+ +|++.+|.+.||+++.+..||.-++
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt  318 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT  318 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence            356777888899999999999999999865 5999999999999999977666544

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.38  E-value=0.0017  Score=64.91  Aligned_cols=97  Identities=23%  Similarity=0.267  Sum_probs=70.3

Q ss_pred             eEEEEcCCHHHHHHHHHH--HhCCCcEEEEecCCcc--hhh---------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQR---------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l--~~~g~~Vtlv~~~~~~--~~~---------------------------------------  254 (497)
                      .|+|||+|+.|+-+|..|  ++.|.+|.++++.+..  ...                                       
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            389999999999999999  8889999999876443  100                                       


Q ss_pred             ---ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          255 ---LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 ---~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                         .-...+.+.+.+.+.+.| .+..+.+|++|+..++  ...+.+++|+++.++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence               001123444555556445 4566788999986544  33578899999999999999996544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.36  E-value=0.00025  Score=69.83  Aligned_cols=40  Identities=28%  Similarity=0.370  Sum_probs=35.0

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ....+|||||||.|||+||.+|.+.|+.  +++|+|.++...
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIG   58 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIG   58 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccC
Confidence            3456999999999999999999999875  899999998653

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.35  E-value=0.00024  Score=70.24  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      .||+|||||+||+++|..|++.|.   +|+|+|+.+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCC
Confidence            589999999999999999999886   89999997654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.34  E-value=0.00024  Score=73.93  Aligned_cols=37  Identities=19%  Similarity=0.423  Sum_probs=33.6

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...+||+|||||..|+++|+.|+++|+   +|+|||+++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl---~V~LvEk~d~   40 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGL---SVLLCEQDDL   40 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCC
Confidence            346899999999999999999999998   8999999754

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.34  E-value=0.00022  Score=75.35  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=33.0

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .++.+|+|||||++||++|..|+++|+   +|+|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence            345899999999999999999999998   899999975

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.33  E-value=0.00024  Score=73.88  Aligned_cols=57  Identities=19%  Similarity=0.392  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-----cEEEcCEEEEeccC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGA  314 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~~D~vv~a~G~  314 (497)
                      ...+.+.+.+.++++|++|++++.|++|... ++++..+.+.++     +++.+|.||+++..
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP  292 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence            4567888889999999999999999999865 444445655554     57899999999874

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.33  E-value=0.0028  Score=63.46  Aligned_cols=47  Identities=26%  Similarity=0.419  Sum_probs=36.1

Q ss_pred             HHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       268 l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      +.+.|++++.+++|++++..+ +.+ .+.+.+| ++.+|.||+|+|....
T Consensus       159 ~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        159 AREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcchh
Confidence            456789999999999998643 333 4677777 6999999999997643

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.32  E-value=0.00032  Score=65.38  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=29.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..|||||+|.|||+|+..+...|-   .|+|+|++.
T Consensus        10 spvvVIGgGLAGLsasn~iin~gg---~V~llek~~   42 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKGG---IVILLEKAG   42 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcCC---eEEEEeccC
Confidence            379999999999999999999875   699999986

>PRK07538 hypothetical protein; Provisional

Probab=97.31  E-value=0.0024  Score=64.85  Aligned_cols=99  Identities=17%  Similarity=0.215  Sum_probs=66.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------cc-------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF-------  256 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------~~-------  256 (497)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.                                  +.       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            6999999999999999999999999999987432100                                  00       


Q ss_pred             -------------------CHHHHHHHHHHHHH-CC-cEEEcCCeEEEEEeCCCCcEEEEEeC-C--CcEEEcCEEEEec
Q 010917          257 -------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLE-D--GSTIDADTIVIGI  312 (497)
Q Consensus       257 -------------------~~~~~~~~~~~l~~-~G-V~i~~~~~v~~i~~~~~~~v~~v~~~-~--g~~i~~D~vv~a~  312 (497)
                                         -..+.+.+.+.+.+ .| ++++.++++++++..+++.+..+... +  ++++.+|+||-|-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD  161 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD  161 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence                               00112223333333 35 57999999999987655533222211 1  2489999999999


Q ss_pred             cCcC
Q 010917          313 GAKP  316 (497)
Q Consensus       313 G~~p  316 (497)
                      |...
T Consensus       162 G~~S  165 (413)
T PRK07538        162 GIHS  165 (413)
T ss_pred             CCCH
Confidence            9864

>PTZ00367 squalene epoxidase; Provisional

Probab=97.28  E-value=0.00028  Score=73.88  Aligned_cols=35  Identities=20%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..+||+|||||++|+++|..|++.|+   +|+|+|+.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence            46899999999999999999999998   899999975

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.26  E-value=0.003  Score=66.42  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      -.|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            46999999999999999999999999999976

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.00087  Score=67.28  Aligned_cols=97  Identities=23%  Similarity=0.359  Sum_probs=66.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc------------------------------------------chhh
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------------------------------------LLQR  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~------------------------------------------~~~~  254 (497)
                      -.|+|||||..|+|.|.+.++.|.++.+++....                                          .+..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            4699999999999999999999999888765410                                          0000


Q ss_pred             c-----------cCHH-HHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          255 L-----------FTPS-LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       255 ~-----------~~~~-~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      .           .|.. ....+++.++. .++.++.+. |.++...++.++.+|.+.+|..+.|+.||+++|.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence            0           1111 12333444433 467776553 5555533333688999999999999999999994

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.26  E-value=0.0032  Score=63.43  Aligned_cols=100  Identities=19%  Similarity=0.227  Sum_probs=69.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--h----hcc----------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----RLF----------------------------------  256 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~----~~~----------------------------------  256 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+...  .    ..+                                  
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999999999999875310  0    000                                  


Q ss_pred             ------------------C-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcCEEEEeccC
Q 010917          257 ------------------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA  314 (497)
Q Consensus       257 ------------------~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D~vv~a~G~  314 (497)
                                        . ..+...+.+.+.+.|+.++.+.+++.+...++.. ..|++. +|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence                              0 1122334455566788888888877775322222 245564 675  6899999999998


Q ss_pred             cCC
Q 010917          315 KPT  317 (497)
Q Consensus       315 ~p~  317 (497)
                      ...
T Consensus       162 ~S~  164 (390)
T TIGR02360       162 HGV  164 (390)
T ss_pred             chh
Confidence            653

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00077  Score=72.36  Aligned_cols=92  Identities=23%  Similarity=0.320  Sum_probs=70.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|.|||+|+.|+.+|..|.+.|+.|++++|.+++..-        -+|..+.++-.+.|.+.||+|++++.|-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            5789999999999999999999999999999999875421        245566677778899999999999765321  


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                              +. -|+-.-+.|.||+|+|..-.
T Consensus      1862 --------vs-~d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred             --------cc-HHHHhhccCeEEEEeCCCCC
Confidence                    11 13333567899999998643

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.25  E-value=0.0004  Score=66.34  Aligned_cols=98  Identities=14%  Similarity=0.213  Sum_probs=72.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      -+++++|||||.-||..+--..+.|-   +||++|-.++..-   .+      +     .++           ...+++.
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~---~m------D-----~Ei-----------sk~~qr~  261 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGG---VM------D-----GEI-----------SKAFQRV  261 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhcc---cc------C-----HHH-----------HHHHHHH
Confidence            35899999999999999999999986   8999997654310   00      0     000           1245677


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC---EEEECC---C--cEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~---~v~~~~---g--~~i~~d~lvlAtG~~~~  184 (497)
                      +.+.|++|.++++|..++++..   .+.+.+   +  +++++|.|++|+|-+|.
T Consensus       262 L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~  315 (506)
T KOG1335|consen  262 LQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF  315 (506)
T ss_pred             HHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence            8889999999999999987665   333332   2  47899999999997765

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.25  E-value=0.0034  Score=63.19  Aligned_cols=96  Identities=22%  Similarity=0.407  Sum_probs=66.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccc-----------hh---------------------h----------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------LQ---------------------R----------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~-----------~~---------------------~----------  254 (497)
                      +|+|||+|+.|+-+|..|++.|.+|.++++. +..           +.                     .          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5899999999999999999999999999876 210           00                     0          


Q ss_pred             ---c---cCH-HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC------C--cEEEcCEEEEeccCcC
Q 010917          255 ---L---FTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKP  316 (497)
Q Consensus       255 ---~---~~~-~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~------g--~~i~~D~vv~a~G~~p  316 (497)
                         .   ++. .+-+.+.+...+.|++++.+ +++++..++++ + .+.+.+      |  .++.+|.||.|.|...
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-V-TLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-E-EEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence               0   010 12234555567789999765 58888765433 2 344432      2  4799999999999765

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=97.23  E-value=0.0051  Score=60.99  Aligned_cols=96  Identities=21%  Similarity=0.241  Sum_probs=66.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--------hhccCH-------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTP-------------------------------  258 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------~~~~~~-------------------------------  258 (497)
                      +|+|||+|+.|+-+|..|++. .+|+++++.+.+.        ...+.+                               
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            589999999999999999999 9999999775320        000000                               


Q ss_pred             ------------------HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeccCcCC
Q 010917          259 ------------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT  317 (497)
Q Consensus       259 ------------------~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vv~a~G~~p~  317 (497)
                                        ++.+.+.+ ..+.|++++.++.+++++..+++.  .+.+ .+|+  ++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~--~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGY--HVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEE--EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence                              00111122 235689999999999998654442  2443 5664  6899999999998653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.22  E-value=0.00075  Score=73.38  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=32.6

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      ..+++|+|||+|+.|+.+|..|++.|++||+++..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            35789999999999999999999999999999975

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0025  Score=56.49  Aligned_cols=99  Identities=15%  Similarity=0.277  Sum_probs=72.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe--------------------cCCcchhhccCHHHHHHHHHHHHHCCcEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF--------------------PENHLLQRLFTPSLAQRYEQLYQQNGVKF  275 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~GV~i  275 (497)
                      ..+|+|||+|+.+...|..+++.-.+..+++                    .-|.+.....++++.+.+++.-++.|.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            4589999999999999999887765555443                    22444445567889999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          276 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       276 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                      ++.+ |.+++..  .+.-.+ +.+.+.+.+|.||+|+|.....
T Consensus        88 ~tEt-Vskv~~s--skpF~l-~td~~~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   88 ITET-VSKVDLS--SKPFKL-WTDARPVTADAVILATGASAKR  126 (322)
T ss_pred             eeee-hhhcccc--CCCeEE-EecCCceeeeeEEEecccceee
Confidence            8764 6666532  222233 3466679999999999987653

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.20  E-value=0.0034  Score=63.81  Aligned_cols=59  Identities=25%  Similarity=0.416  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccCcCC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  317 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~~p~  317 (497)
                      ..+...+.+.++++|+++++++.++++..+ +++|.++...   +|+  ++.++.||+|+|--..
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            345667788889999999999999999864 6788888776   454  5789999999997654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.20  E-value=0.005  Score=62.13  Aligned_cols=98  Identities=19%  Similarity=0.320  Sum_probs=64.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh------------h------c------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------R------L------------------------  255 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------~------~------------------------  255 (497)
                      +|+|||+|+.|+-+|..|++.|.+|.++++.+....            .      .                        
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            689999999999999999999999999987632100            0      0                        


Q ss_pred             --------cC-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeC-CCCcEEEEEe--CC-----C--cEEEcCEEEEeccCcC
Q 010917          256 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAKP  316 (497)
Q Consensus       256 --------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~~~v~~v~~--~~-----g--~~i~~D~vv~a~G~~p  316 (497)
                              ++ ..+-+.+.+...+.|++++.++ +..++.. ..+....+++  .+     |  .++.++.||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 0112234555677899998775 6666421 1122223332  21     3  4799999999999876

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN02785 Protein HOTHEAD

Probab=97.19  E-value=0.0069  Score=63.95  Aligned_cols=36  Identities=19%  Similarity=0.462  Sum_probs=31.7

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...+|++|||||.||+.+|.+|.+ ..   +|+|||+.+.
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~---~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NF---SVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CC---cEEEEecCCC
Confidence            346999999999999999999999 34   8999999864

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.17  E-value=0.00075  Score=66.82  Aligned_cols=85  Identities=20%  Similarity=0.444  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCC-cEEEEE-eC--CCcEEEcCEEEEeccCcCCCcchhhcCCccc--CC
Q 010917          259 SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDG-RVAAVK-LE--DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VG  331 (497)
Q Consensus       259 ~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~-~v~~v~-~~--~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~g  331 (497)
                      .+.+.+.+.+.+. |++++++++|+.|+..+++ ..+.+. +.  +..++.++.|++..|-.. ..+++.+|++-.  -|
T Consensus       182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~gyg  260 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKGYG  260 (488)
T ss_pred             HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhcccC
Confidence            3445555556666 9999999999999988777 333332 22  335799999999999765 367888888532  23


Q ss_pred             CEEec-CCCCCCCC
Q 010917          332 GIQVD-GQFRTRMP  344 (497)
Q Consensus       332 ~i~vd-~~~~t~~~  344 (497)
                      +..|. .++++..|
T Consensus       261 gfPVsG~fl~~~n~  274 (488)
T PF06039_consen  261 GFPVSGQFLRCKNP  274 (488)
T ss_pred             CCcccceEEecCCH
Confidence            44443 35555444

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.16  E-value=0.0042  Score=61.96  Aligned_cols=31  Identities=32%  Similarity=0.496  Sum_probs=28.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      +|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~   32 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS   32 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999865

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.15  E-value=0.0055  Score=65.38  Aligned_cols=32  Identities=38%  Similarity=0.447  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      -.|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            57999999999999999999999999999876

>TIGR02730 carot_isom carotene isomerase

Probab=97.13  E-value=0.00053  Score=71.33  Aligned_cols=56  Identities=23%  Similarity=0.309  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      ..+.+.+.+.++++|++++.++.|++|... ++++..|.+.+|+++++|.||+++|.
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~  284 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATR  284 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCCh
Confidence            457788889999999999999999999864 56777899999999999999999875

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.11  E-value=0.0062  Score=57.58  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEe-CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~-~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+.++..+++.|+.++.+..++.++- ++++....|.+.+|..+.++.+|+++|.--+
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~  213 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN  213 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence            345677778999999999999887762 2345566899999999999999999997654

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.10  E-value=0.0056  Score=63.10  Aligned_cols=97  Identities=28%  Similarity=0.392  Sum_probs=67.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-----------------------h-------c-----------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------R-------L-----------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------------------~-------~-----------  255 (497)
                      ..|+|||+|..|+-+|..+++.|.+|.|++..+....                       .       .           
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4699999999999999999999999999887421000                       0       0           


Q ss_pred             ------------------------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917          256 ------------------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  299 (497)
Q Consensus       256 ------------------------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~  299 (497)
                                                          ....+.+.+.+.+++.||+++.+ .++.+.. +++++..+.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                                                01123344455556678888765 6666654 3566666665 5


Q ss_pred             CcEEEcCEEEEeccCcC
Q 010917          300 GSTIDADTIVIGIGAKP  316 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p  316 (497)
                      ++.+.++.||+|+|...
T Consensus       159 g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        159 GELLKFDATVIATGGFS  175 (466)
T ss_pred             CEEEEeCeEEECCCcCc
Confidence            66799999999999644

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.09  E-value=0.00058  Score=68.30  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+|+|||||+||++||..|+++|+   +|+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence            379999999999999999999998   8999998654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.08  E-value=0.0059  Score=64.16  Aligned_cols=98  Identities=23%  Similarity=0.289  Sum_probs=70.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  253 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------------------  253 (497)
                      -.|+|||+|..|+-.|..+++.|.+|.|+++.+....                                           
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~   96 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV   96 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4699999999999999999999999999887521100                                           


Q ss_pred             ------------------------------------h-------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC
Q 010917          254 ------------------------------------R-------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  290 (497)
Q Consensus       254 ------------------------------------~-------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~  290 (497)
                                                          +       ..+..+...+.+.+++.||+++.++.+.++..++++
T Consensus        97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g  176 (541)
T PRK07804         97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG  176 (541)
T ss_pred             HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence                                                0       001223344556666778999999999998755456


Q ss_pred             cEEEEEeC-------CC-cEEEcCEEEEeccC
Q 010917          291 RVAAVKLE-------DG-STIDADTIVIGIGA  314 (497)
Q Consensus       291 ~v~~v~~~-------~g-~~i~~D~vv~a~G~  314 (497)
                      ++.++...       ++ ..+.++.||+|+|-
T Consensus       177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG  208 (541)
T PRK07804        177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG  208 (541)
T ss_pred             eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence            77666543       23 36899999999985

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.07  E-value=0.00068  Score=65.83  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=35.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ....+|+|+|||.+||++|++|++++. +..|+|+|+.+...
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG   49 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence            345799999999999999999999986 67799999988654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.05  E-value=0.0008  Score=72.54  Aligned_cols=40  Identities=28%  Similarity=0.401  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ....++|+|||||++|++||+.|.+.|+   +|+|+|+.+...
T Consensus       235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G  274 (808)
T PLN02328        235 GVEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG  274 (808)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence            3456899999999999999999999998   899999987653

>PLN02676 polyamine oxidase

Probab=97.03  E-value=0.00091  Score=69.15  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..+++|+|||||++||+||++|++.|..  +|+|+|+.+..
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~   62 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRI   62 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCC
Confidence            3467999999999999999999999862  69999998764

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.00  E-value=0.00079  Score=70.92  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||||||+|.|||+||.++++.|.   +|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            35799999999999999999999987   899999987

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.99  E-value=0.0096  Score=60.93  Aligned_cols=99  Identities=20%  Similarity=0.322  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch---h---------h------c----------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---Q---------R------L----------------------  255 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~---------~------~----------------------  255 (497)
                      .-+|+|||+|+.|.-+|..|++.|.+|.++++.+...   .         .      .                      
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            3479999999999999999999999999998763210   0         0      0                      


Q ss_pred             ----------cC-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC--CCcEEEEEeCC-------C--cEEEcCEEEEecc
Q 010917          256 ----------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLED-------G--STIDADTIVIGIG  313 (497)
Q Consensus       256 ----------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~~~v~~v~~~~-------g--~~i~~D~vv~a~G  313 (497)
                                ++ ..+-+.+.+...+.|++++.+ .+.+++...  ++.+ .+.+.+       |  .++.+|.||-|.|
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~v~a~~VIgADG  196 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPY-VIHYTSYDSGSGAGTPKTLEVDAVIGADG  196 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcE-EEEEEeccccccCCCccEEEeCEEEEcCC
Confidence                      00 012234555567789999866 466665321  2222 233321       3  4799999999999


Q ss_pred             CcC
Q 010917          314 AKP  316 (497)
Q Consensus       314 ~~p  316 (497)
                      ...
T Consensus       197 ~~S  199 (450)
T PLN00093        197 ANS  199 (450)
T ss_pred             cch
Confidence            754

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.98  E-value=0.00082  Score=70.12  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ...||||||+| ||++||.++++.|.   +|+||||.+..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~~   41 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDKF   41 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCCC
Confidence            36799999999 99999999999997   89999998753

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.97  E-value=0.0046  Score=64.39  Aligned_cols=103  Identities=20%  Similarity=0.442  Sum_probs=76.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcc------hhhccC-----HHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFT-----PSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~------~~~~~~-----~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      ..+++|||.|..|.-+...+.+.   -.++|++...+++      +.+.+.     +++.-.-.++.+++||+++.+..+
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            46799999999999999988874   3468887655432      111121     122223356789999999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchh
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  322 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~  322 (497)
                      ..|+..  .+  .|+.++|.++.+|.+|+|||..|......
T Consensus        83 ~~idr~--~k--~V~t~~g~~~~YDkLilATGS~pfi~PiP  119 (793)
T COG1251          83 IQIDRA--NK--VVTTDAGRTVSYDKLIIATGSYPFILPIP  119 (793)
T ss_pred             EEeccC--cc--eEEccCCcEeecceeEEecCccccccCCC
Confidence            999854  32  57889999999999999999999765443

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.96  E-value=0.00098  Score=64.75  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +.+|+|||||.+|+++|..|.++|+   +++|+|+...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeeccc
Confidence            4699999999999999999999999   8999999654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.95  E-value=0.0079  Score=61.48  Aligned_cols=64  Identities=14%  Similarity=0.198  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEeCC-CCcEEEEEeCC-CcEEEcCEEEEecc-CcCCCcchhh
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIG-AKPTVSPFER  323 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~~~v~~v~~~~-g~~i~~D~vv~a~G-~~p~~~~~~~  323 (497)
                      +.+.+.+.+++.|+++++++.++++..++ ++++..+...+ +.++.++.||+|+| +..|.+++..
T Consensus       125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            34455566678899999999999987643 46676666543 35799999999999 4555555554

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.93  E-value=0.01  Score=62.98  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=37.8

Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~  315 (497)
                      +.+.+++.||+++.++.++++..+ ++++.++..   .+|+  .+.++.||+|+|-.
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            344456678999999999998754 577766543   3564  58999999999964

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.89  E-value=0.00086  Score=65.87  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...++|||||||.||..||...++.|.   +-+|+..+-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga---~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGA---RTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCC---ceEEeeccc
Confidence            457899999999999999999999986   677777654

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=96.87  E-value=0.0014  Score=64.73  Aligned_cols=39  Identities=23%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ....+|+|||+|.|||.||+.|.+.|+   +|+|+|..+...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcC
Confidence            456899999999999999999999999   799999988654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.84  E-value=0.0013  Score=69.64  Aligned_cols=67  Identities=21%  Similarity=0.320  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEecc-CcCCCcchhh
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER  323 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D-~vv~a~G-~~p~~~~~~~  323 (497)
                      ...+...+.+..++.|++|++++.++++..+++++|++|... +++  ++.+. .||+|+| +.-|.+++++
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            345556667777888999999999999886656788776553 333  46776 4777765 4555555554

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.83  E-value=0.0031  Score=62.28  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc------cCHH------HHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------~~~~------~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      .++++|||||..|++.|..|++.|.+|+++++.+.+..+.      |+..      +...+.+.-...+|++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            5789999999999999999999999999999998776541      1111      223344444556899999999999


Q ss_pred             EEe
Q 010917          284 LEA  286 (497)
Q Consensus       284 i~~  286 (497)
                      ++.
T Consensus       204 v~G  206 (622)
T COG1148         204 VSG  206 (622)
T ss_pred             ecc
Confidence            864

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=96.81  E-value=0.0087  Score=61.48  Aligned_cols=71  Identities=17%  Similarity=0.320  Sum_probs=54.4

Q ss_pred             CcEEEEecCCcchhhccCH-HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          240 LDTTIIFPENHLLQRLFTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       240 ~~Vtlv~~~~~~~~~~~~~-~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      ..-.+..+.+..+    || .+...+....++.|..++.+..|+++... +++..+|.+.-|. |++..+|-|+|+-.
T Consensus       172 v~g~Ly~P~DG~~----DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~-iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  172 VYGGLYSPGDGVM----DPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGS-IETECVVNAAGVWA  243 (856)
T ss_pred             heeeeecCCCccc----CHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcc-eecceEEechhHHH
Confidence            3445677777543    44 45677788889999999999999999864 4444478888885 99999999999865

>PLN02985 squalene monooxygenase

Probab=96.80  E-value=0.015  Score=60.54  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~   75 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERD   75 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence            347999999999999999999999999999976

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.79  E-value=0.0049  Score=58.03  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|||+|.|||-||.+|+.+|.   +|+++|.+.
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEg   38 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEG   38 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCc---eEEEEcccc
Confidence            35799999999999999999999998   899999986

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.78  E-value=0.016  Score=61.58  Aligned_cols=54  Identities=19%  Similarity=0.216  Sum_probs=39.7

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCcC
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~p  316 (497)
                      .+.+.+++.||+++.++.++++..++++++.++..   .+|+  .+.++.||+|+|--.
T Consensus       154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            34445567889999999999987554477877754   3554  688999999999643

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.78  E-value=0.0011  Score=64.07  Aligned_cols=67  Identities=19%  Similarity=0.357  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEe-CCCCcEEEEEeCC--Cc----EEEcCEEEEeccCcCCCcchhhcCC
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLED--GS----TIDADTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~-~~~~~v~~v~~~~--g~----~i~~D~vv~a~G~~p~~~~~~~~gl  326 (497)
                      ...++...++..|++++++++|++|.. .+++++.+|++.+  +.    .+.++.||+|.|.--...+|..+|+
T Consensus       195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            445666666666999999999999943 2466777776643  33    5678999999997655467776666

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.77  E-value=0.0047  Score=56.58  Aligned_cols=100  Identities=18%  Similarity=0.296  Sum_probs=65.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------------  255 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------------------------------------------  255 (497)
                      +|+|||+|..|+-+|..|+..|.+||+++++..+..+.                                          
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            58999999999999999999999999999873222110                                          


Q ss_pred             -------------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeccC
Q 010917          256 -------------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGA  314 (497)
Q Consensus       256 -------------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~  314 (497)
                                         . .+.++ .+.+.| ....++.++++|+++...++.  -.+++++| ....+|.|++++..
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgms-alak~L-AtdL~V~~~~rVt~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMS-ALAKFL-ATDLTVVLETRVTEVARTDND--WTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchH-HHHHHH-hccchhhhhhhhhhheecCCe--eEEEecCCCcccccceEEEecCC
Confidence                               0 01111 122222 234667778888888755333  35777565 46889999999865


Q ss_pred             cCCCcch
Q 010917          315 KPTVSPF  321 (497)
Q Consensus       315 ~p~~~~~  321 (497)
                      -.-..++
T Consensus       159 PQ~~~LL  165 (331)
T COG3380         159 PQTATLL  165 (331)
T ss_pred             Ccchhhc
Confidence            3333344

>PRK08275 putative oxidoreductase; Provisional

Probab=96.77  E-value=0.019  Score=60.64  Aligned_cols=55  Identities=22%  Similarity=0.269  Sum_probs=40.9

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCcC
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~p  316 (497)
                      ..+.+.+++.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|+|-..
T Consensus       141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        141 KVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            445555677899999999999987644567766653   3554  588999999999754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.76  E-value=0.015  Score=61.83  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=33.9

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccCc
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~~  315 (497)
                      ||+++.++.++++..++++++.++...   +|+  .+.++.||+|||--
T Consensus       147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            799999999998875545677777653   443  58899999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=96.75  E-value=0.0058  Score=48.77  Aligned_cols=33  Identities=12%  Similarity=0.273  Sum_probs=24.7

Q ss_pred             CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHh
Q 010917          431 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  464 (497)
Q Consensus       431 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  464 (497)
                      .|-++||+++++|+|+++ .|--..+...|++|.
T Consensus        99 ~kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~  131 (133)
T PF14721_consen   99 GKGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA  131 (133)
T ss_dssp             SEEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred             CceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence            345789999999999997 666677888888874

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.73  E-value=0.02  Score=61.14  Aligned_cols=54  Identities=24%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~  315 (497)
                      ..+.+..++.||+++.++.++++..++++++.++..   .+|+  .+.++.||+|+|--
T Consensus       170 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  228 (617)
T PTZ00139        170 HTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY  228 (617)
T ss_pred             HHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence            334444566788888888888876534677777654   3554  67899999999753

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.73  E-value=0.0018  Score=68.16  Aligned_cols=66  Identities=24%  Similarity=0.323  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEeccC-cCCCcchhh
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIGA-KPTVSPFER  323 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D-~vv~a~G~-~p~~~~~~~  323 (497)
                      +..+...+.+.+++.|+++++++.++++..+ ++++.+|... +|+  ++.++ .||+|+|- .-|.++++.
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~~  277 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRKR  277 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHHH
Confidence            4566677777788899999999999998754 5777776553 343  46774 67777764 444444443

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.0064  Score=59.99  Aligned_cols=32  Identities=41%  Similarity=0.498  Sum_probs=28.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      -.|+|||||..|+|.|.+.++.|.+.++++..
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            47999999999999999999999998887655

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.69  E-value=0.015  Score=60.56  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      -.|+|||||.+|+-+|..|+++|.+|.|+++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            46999999999999999999999999999977

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.68  E-value=0.017  Score=61.40  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .+..+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456789999999999999999999999999999864

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.67  E-value=0.02  Score=58.46  Aligned_cols=54  Identities=9%  Similarity=0.228  Sum_probs=38.1

Q ss_pred             HHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEE-eCCCc--EEEcCEEEEeccCc
Q 010917          261 AQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       261 ~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~-~~~g~--~i~~D~vv~a~G~~  315 (497)
                      .+.+.+.+++ .||++++++.++++..+ ++++.++. ..+++  .+.++.||+|+|--
T Consensus       131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        131 EKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             HHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            3344545554 59999999999998653 56666643 33444  58999999999964

>PRK12839 hypothetical protein; Provisional

Probab=96.66  E-value=0.0023  Score=67.46  Aligned_cols=67  Identities=24%  Similarity=0.353  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc-E-EEcCEEEEeccCc-CCCcchhh
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-T-IDADTIVIGIGAK-PTVSPFER  323 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g~-~-i~~D~vv~a~G~~-p~~~~~~~  323 (497)
                      +..+...+.+..++.|++++.++.++++..++++++.+|...  +++ . ..++.||+|+|-- -|.+++..
T Consensus       213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~~  284 (572)
T PRK12839        213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRKE  284 (572)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHHH
Confidence            445666677778889999999999999875556788877543  443 2 3458899998654 44444433

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.66  E-value=0.02  Score=61.35  Aligned_cols=49  Identities=22%  Similarity=0.338  Sum_probs=37.3

Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccCc
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~~  315 (497)
                      +.+++.||+++.++.++++..+ ++++.++...   +|+  .+.++.||+|+|--
T Consensus       178 ~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~  231 (640)
T PRK07573        178 RQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGY  231 (640)
T ss_pred             HHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence            3456778999999999998753 5777777653   453  68999999999963

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.65  E-value=0.018  Score=60.84  Aligned_cols=51  Identities=12%  Similarity=0.100  Sum_probs=37.7

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccC
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA  314 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~  314 (497)
                      .+.+.+.+.||+++.++.++++..+ +|++.++...   +++  .+.++.||+|+|-
T Consensus       141 ~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        141 TLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            3444455678999999999988754 6788877653   332  5789999999994

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0057  Score=57.92  Aligned_cols=100  Identities=27%  Similarity=0.407  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Ccc-----------hhhccCHHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  282 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~  282 (497)
                      +-.|+|||||+.|...|-+.++.|.+.-++..+  ..+           .+...++++...+++..++..|+++...+.+
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~  290 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS  290 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence            457999999999999999999988764433111  000           1123567889999999999999999988888


Q ss_pred             EEEeCC-CCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          283 NLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       283 ~i~~~~-~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      ++++.. .+....|++.+|-.+++..+|+++|.+
T Consensus       291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence            887632 344568999999999999999999975

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.60  E-value=0.031  Score=59.89  Aligned_cols=101  Identities=22%  Similarity=0.337  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcchhh----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~----------------------------------------  254 (497)
                      .-+|+|||+|+.|+-+|..|+++ |.+|+|+++.+.....                                        
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            45799999999999999999995 9999999977221100                                        


Q ss_pred             -------------------------ccC-HHHHHHHHHHHHHCC--cEEEcCCeEEEEEeCCCC-cEEEEEeC------C
Q 010917          255 -------------------------LFT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG-RVAAVKLE------D  299 (497)
Q Consensus       255 -------------------------~~~-~~~~~~~~~~l~~~G--V~i~~~~~v~~i~~~~~~-~v~~v~~~------~  299 (497)
                                               .+. ..+.+.+.+.+.+.|  +++..++++++++.++++ .-+.+++.      +
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~  191 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE  191 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence                                     000 013344556666665  578889999999765322 21234443      3


Q ss_pred             C--cEEEcCEEEEeccCcC
Q 010917          300 G--STIDADTIVIGIGAKP  316 (497)
Q Consensus       300 g--~~i~~D~vv~a~G~~p  316 (497)
                      |  +++.+|+||-|-|.+.
T Consensus       192 g~~~tv~A~~lVGaDGa~S  210 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARS  210 (634)
T ss_pred             CceEEEEeCEEEECCCCch
Confidence            5  5799999999999753

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.60  E-value=0.027  Score=59.73  Aligned_cols=52  Identities=21%  Similarity=0.222  Sum_probs=38.1

Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~  315 (497)
                      +.+...+.||+++.++.++++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       149 L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  205 (588)
T PRK08958        149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA  205 (588)
T ss_pred             HHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence            3344456788999999988887544678877754   3554  57899999999964

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.60  E-value=0.0029  Score=59.32  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=33.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ++|++|||+|.+|+..|..|++.|.   +|.|||+.++..
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCC
Confidence            3799999999999999999999998   899999998864

>TIGR00551 nadB L-aspartate oxidase

Probab=96.60  E-value=0.018  Score=59.83  Aligned_cols=57  Identities=19%  Similarity=0.296  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEeccCcCC
Q 010917          260 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPT  317 (497)
Q Consensus       260 ~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~~D~vv~a~G~~p~  317 (497)
                      +...+.+.+++ .||+++.++.++++..+ ++.+.++...+ +  ..+.++.||+|+|-...
T Consensus       130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       130 VITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            33445555565 68999999999998753 56666665543 3  36899999999997543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK02106 choline dehydrogenase; Validated

Probab=96.59  E-value=0.0026  Score=67.23  Aligned_cols=65  Identities=14%  Similarity=0.230  Sum_probs=46.5

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeccCcCCCcchhhcCCcc
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNS  328 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vv~a~G~~p~~~~~~~~gl~~  328 (497)
                      ++....+..++++++++.|.+|.-+ ++++.+|+..+.    ..+.++.||+|.|.--...+|..+|+-.
T Consensus       206 ~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~  274 (560)
T PRK02106        206 YLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP  274 (560)
T ss_pred             hhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence            3444445678999999999999865 566777776432    2468999999999765556666666643

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.57  E-value=0.029  Score=59.76  Aligned_cols=32  Identities=28%  Similarity=0.584  Sum_probs=29.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~  248 (497)
                      -.|+|||+|..|+-+|..+++.  |.+|.|+++.
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~   45 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA   45 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3699999999999999999998  9999998865

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.0098  Score=61.15  Aligned_cols=35  Identities=14%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.++|+|+|+|..|+++|..|++.|+   +|+++|++.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~---~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA---KVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            45899999999999999999999998   899998864

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.49  E-value=0.03  Score=58.93  Aligned_cols=53  Identities=13%  Similarity=0.233  Sum_probs=38.1

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~  315 (497)
                      .+.+.+++.||++++++.++++..++++++.++..   .+|+  .+.++.||+|+|--
T Consensus       139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            34455566789999999999987544444666543   4554  58899999999964

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.49  E-value=0.0098  Score=59.75  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=31.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~   96 (497)
                      +++.=|||+|.|+|+||..|.+.+ .+..+|+++|+.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~   39 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELD   39 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCC
Confidence            467889999999999999999865 3566899999876

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.49  E-value=0.0043  Score=60.06  Aligned_cols=104  Identities=21%  Similarity=0.254  Sum_probs=68.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      ..++.|.|||+|+-|-..|..|.++-. ...+|.-+=.+.+   .   +.+  +     .+..+           .+...
T Consensus       345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~---n---m~k--i-----LPeyl-----------s~wt~  400 (659)
T KOG1346|consen  345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY---N---MEK--I-----LPEYL-----------SQWTI  400 (659)
T ss_pred             hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC---C---hhh--h-----hHHHH-----------HHHHH
Confidence            456899999999999999999988532 1223322222211   0   000  0     01111           12234


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +-+++.||+++.+..|.++.....  .+.+.||.++..|.+|+|+|..|+.
T Consensus       401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence            456778999999988887765443  6788999999999999999998873

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.48  E-value=0.013  Score=60.34  Aligned_cols=136  Identities=15%  Similarity=0.188  Sum_probs=74.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  141 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (497)
                      +|+|||.|++|+++|+.|+++|+   +|+++|+++...+                                ......+++
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~---~V~~~D~~~~~~~--------------------------------~~~~~~l~~   46 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW---EVVVSDRNDSPEL--------------------------------LERQQELEQ   46 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC---EEEEECCCCchhh--------------------------------HHHHHHHHH
Confidence            69999999999999999999998   8999998754210                                011234566


Q ss_pred             cCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEE
Q 010917          142 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV  221 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV  221 (497)
                      .|+.+..+...   +.+......     -.+|.||+..|..+.. |...-....++..+..   .+.+.......+.|.|
T Consensus        47 ~gi~~~~g~~~---~~~~~~~~~-----~~~d~vv~s~gi~~~~-~~~~~a~~~~i~v~~~---~~~~~~~~~~~~~I~V  114 (459)
T PRK02705         47 EGITVKLGKPL---ELESFQPWL-----DQPDLVVVSPGIPWDH-PTLVELRERGIEVIGE---IELAWRALKHIPWVGI  114 (459)
T ss_pred             cCCEEEECCcc---chhhhhHHh-----hcCCEEEECCCCCCCC-HHHHHHHHcCCcEEEh---HHHHHHhhcCCCEEEE
Confidence            78888776422   111100000     2478899988876542 3211111123333322   2222222223344555


Q ss_pred             EcC-C--HHHHHHHHHHHhCCCcEEE
Q 010917          222 VGG-G--YIGMEVAAAAVGWKLDTTI  244 (497)
Q Consensus       222 vG~-G--~~g~e~A~~l~~~g~~Vtl  244 (497)
                      =|+ |  -+.--++..|...|.+...
T Consensus       115 TGT~GKTTTt~ml~~iL~~~g~~~~~  140 (459)
T PRK02705        115 TGTNGKTTVTALLAHILQAAGLNAPA  140 (459)
T ss_pred             eCCCchHHHHHHHHHHHHHcCCCeEE
Confidence            553 2  2333445566667766554

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.48  E-value=0.035  Score=59.30  Aligned_cols=53  Identities=21%  Similarity=0.255  Sum_probs=37.7

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~  315 (497)
                      .+.+...+.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|+|--
T Consensus       192 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  249 (635)
T PLN00128        192 TLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY  249 (635)
T ss_pred             HHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence            33444556788998888888866544577777654   3453  67899999999864

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.46  E-value=0.033  Score=59.03  Aligned_cols=54  Identities=17%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeccCcC
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vv~a~G~~p  316 (497)
                      ..+.+.+++.||+++.++.+.++... ++++.++.   ..+|+  .+.++.||+|+|-..
T Consensus       139 ~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        139 HELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            34555567789999999999998653 56666554   34554  589999999999753

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.45  E-value=0.0039  Score=65.62  Aligned_cols=66  Identities=20%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEc-CEEEEeccCc-CCCcchhh
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGAK-PTVSPFER  323 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~-D~vv~a~G~~-p~~~~~~~  323 (497)
                      +..+...+.+.+++.||++++++.++++.. ++++|.+|... +|.  .+.+ ..||+|+|-- -|.++.++
T Consensus       216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~~  286 (564)
T PRK12845        216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRWK  286 (564)
T ss_pred             hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHHH
Confidence            567777888888999999999999999875 36788777543 343  3555 5788888754 44344443

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.44  E-value=0.0053  Score=44.62  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=29.7

Q ss_pred             EEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          221 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       221 VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      |||+|.+|+-+|..|++.|.+|+|+++.+.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            799999999999999999999999999987654

...

>PLN03000 amine oxidase

Probab=96.44  E-value=0.0042  Score=67.24  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ...++|+|||||++|+.||+.|++.|+   +|+|+|+.+...
T Consensus       182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG  220 (881)
T PLN03000        182 SSKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG  220 (881)
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence            346899999999999999999999998   899999987643

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.43  E-value=0.033  Score=58.11  Aligned_cols=32  Identities=28%  Similarity=0.464  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      -.|+|||||.+|+-+|..|+++|.+|.|+++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            46999999999999999999999999999976

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.43  E-value=0.046  Score=58.13  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      -.|+|||+|..|+-.|..+++.|.+|+|++..
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            46999999999999999999999999998875

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.37  E-value=0.04  Score=55.08  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=26.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCC---cEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKL---DTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~---~Vtlv~~~  248 (497)
                      .+|+|||+|++|+.+|..|.+.-.   .++++++.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~   36 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR   36 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc
Confidence            479999999999999999987531   38888776

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.35  E-value=0.015  Score=59.88  Aligned_cols=82  Identities=22%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++++|+|+|.+|+.+|..|++.|.+|+++++...       +.+ ....+.+.+.|++++.+....+           
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~-----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE-----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence            478999999999999999999999999999977541       112 2223446677888765543210           


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                            ..-.+|.||.++|..|+.+.+
T Consensus        65 ------~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106         65 ------FLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             ------HhhcCCEEEECCCCCCCCHHH
Confidence                  112479999999998887654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.28  E-value=0.0045  Score=64.22  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=44.4

Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCC--CcEEEEEeC---CCc--EEEcCEEEEeccCcCCCcchhhcCCc
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSD--GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~--~~v~~v~~~---~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~  327 (497)
                      +.++..++++++++.|.+|..+++  +++..+...   +|+  ++.|+.||+|.|..-+..+|-.++..
T Consensus       222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~  290 (544)
T TIGR02462       222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG  290 (544)
T ss_pred             hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence            334456699999999999986544  356666443   343  58999999999987776776655543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.27  E-value=0.064  Score=56.98  Aligned_cols=56  Identities=21%  Similarity=0.240  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHCCcEEEcCCeEEEEEeCCC---CcEEEEEe---CCCc--EEEcCEEEEeccCcC
Q 010917          261 AQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       261 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~---~~v~~v~~---~~g~--~i~~D~vv~a~G~~p  316 (497)
                      ...+.+.+++.||+++.++.+.++...++   +++.++..   .+|+  .+.++.||+|+|-..
T Consensus       143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            34455666778999999999999875432   67777654   3554  578999999999754

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.27  E-value=0.048  Score=58.38  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      -.|+|||+|..|+-+|..+++.|.+|.+++..
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            36999999999999999999999999998765

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.24  E-value=0.047  Score=57.88  Aligned_cols=34  Identities=38%  Similarity=0.456  Sum_probs=30.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      -.|+|||+|..|+-.|..+++.|.+|.|+++.+.
T Consensus        12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~   45 (584)
T PRK12835         12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH   45 (584)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            4699999999999999999999999999987754

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.22  E-value=0.053  Score=57.56  Aligned_cols=31  Identities=32%  Similarity=0.532  Sum_probs=28.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC---CcEEEEecC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPE  248 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~  248 (497)
                      .|+|||+|..|+-.|..+++.|   .+|+|+++.
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~   40 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT   40 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence            5999999999999999999998   799998865

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.17  E-value=0.055  Score=57.52  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      ..|+|||+|..|+-.|..+++.|.+|.|++..
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            36999999999999999999999999999843

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.15  E-value=0.022  Score=55.62  Aligned_cols=34  Identities=32%  Similarity=0.529  Sum_probs=31.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .+|+|||||..|+-.|.+|.+.|.+|.+++.+..
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            5799999999999999999999999999987633

>PLN02976 amine oxidase

Probab=96.13  E-value=0.0073  Score=68.10  Aligned_cols=38  Identities=21%  Similarity=0.430  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ...++|+|||||++|+++|+.|.+.|+   +|+|+|+.+..
T Consensus       691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~v  728 (1713)
T PLN02976        691 VDRKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRI  728 (1713)
T ss_pred             CCCCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCC
Confidence            345899999999999999999999998   89999998654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.10  E-value=0.015  Score=63.72  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH  250 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~  250 (497)
                      +|+|||+|+.|+-+|..|++.  |.+|+|+++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999998  899999998864

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.04  E-value=0.0084  Score=57.66  Aligned_cols=39  Identities=21%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      .....||+|||||.+|-+.|+.|++.|.   +|.+||++-..
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~E   80 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLSE   80 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCc---EEEEEeccccc
Confidence            4456899999999999999999999987   89999998543

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=96.02  E-value=0.014  Score=47.02  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=44.0

Q ss_pred             cEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh--hhhcCCCcHHHHHHHHH
Q 010917          432 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR  488 (497)
Q Consensus       432 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  488 (497)
                      .+.|+.++  +++|+|+++++.++.++... ..+++++.+++.  ..+..|||++|+++.|+
T Consensus        49 g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~  110 (110)
T PF02852_consen   49 GFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA  110 (110)
T ss_dssp             EEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred             eeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence            46677665  48999999988878776544 556789988872  33589999999999986

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.98  E-value=0.05  Score=56.76  Aligned_cols=31  Identities=23%  Similarity=0.432  Sum_probs=26.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      ..|+|||+|..|+-.|..+++ |.+|.+++..
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~   34 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK   34 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence            469999999999999999876 8899988765

>PRK07395 L-aspartate oxidase; Provisional

Probab=95.98  E-value=0.04  Score=57.97  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=26.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      -.|+|||+|..|+-+|..++ .|.+|.|++..
T Consensus        10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~   40 (553)
T PRK07395         10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKD   40 (553)
T ss_pred             CCEEEECccHHHHHHHHHhh-cCCCEEEEEcc
Confidence            46999999999999998886 48899998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	497
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		4e-35
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		2e-33
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		2e-33
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		2e-33
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		2e-24
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		3e-22
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		3e-22
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		5e-18
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		7e-18
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		7e-18
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		8e-18
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		2e-17
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		6e-17
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		1e-11
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		4e-11
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		5e-11
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-10
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-09
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		4e-09
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		3e-08
4gcm_A	312	Crystal Structure Of A Thioredoxine Reductase (Trxb		3e-08
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		6e-08
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		6e-08
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		6e-08
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		6e-08
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		6e-08
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		8e-08
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		8e-08
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		1e-07
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		1e-07
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		1e-07
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		2e-07
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		3e-07
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		3e-07
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		4e-07
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		4e-07
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		5e-07
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		5e-07
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		5e-07
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		5e-07
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		6e-07
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		6e-07
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		6e-07
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		7e-07
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		8e-07
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		1e-06
3klj_A	385	Crystal Structure Of Nadh:rubredoxin Oxidoreductase		1e-06
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-06
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-06
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		2e-06
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		2e-06
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		1e-05
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		1e-05
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		1e-05
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		1e-05
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		1e-05
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		1e-05
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		1e-05
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		2e-05
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		2e-05
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		2e-05
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		3e-05
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		7e-05
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		8e-05
3oc4_A	452	Crystal Structure Of A Pyridine Nucleotide-Disulfid		1e-04
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		1e-04
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		1e-04
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		1e-04
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		2e-04
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		7e-04
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		8e-04

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  145 bits (367), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 164/343 (47%), Gaps = 27/343 (7%)
Query: 62  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 121
           + V++ G   AG+     +      GR+ +++ E + PY+RP L+K YL           
Sbjct: 2   DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYL----------- 50
Query: 122 GFHTCVGSGGERQT----PE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 176
                  SGG+  +    PE +++++ IE+I  D + SID E + L+  SG  ++YG L+
Sbjct: 51  ------KSGGDPNSLMFRPEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLV 103
Query: 177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 236
           +ATG   +R  +     LP V Y+R + +++ L   +   K        +IG+E AA A 
Sbjct: 104 LATGAR-NRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATAR 162
Query: 237 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 296
              L+  ++     ++ R+ TP ++  +   +   G++   G     + A  D RV  V 
Sbjct: 163 AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVV 221
Query: 297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
           L DG+T+  D +V+G+G  P V          +  GI VD Q  T  P I AIGD A F 
Sbjct: 222 LSDGNTLPCDLVVVGVGVIPNVE-IAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFE 280
Query: 357 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 399
              +  T RVE V +A   A+ C+ A L+     YD  P+F+S
Sbjct: 281 SVRFGETMRVESVQNATDQAR-CVAARLTGDAKPYDGYPWFWS 322

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 27/356 (7%)
Query: 86  DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTPEWYKEKGI 144
           +GR+ ++ +E   PYERP L+K YL       AR   F   C+      +  +++++K +
Sbjct: 34  EGRVLVIGREPEIPYERPPLSKEYL-------AREKTFERICI------RPAQFWEDKAV 80
Query: 145 EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 204
           EM     V S+D    T+    G  ++YG LI ATG    R    +G  L GVH +R   
Sbjct: 81  EMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRL-SCVGADLAGVHAVRTKE 139
Query: 205 DADALISSLEK-AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 263
           DAD L++ L+  AK        YIG+E AA    + ++ T++     +L R+   +L++ 
Sbjct: 140 DADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 323
           Y+  ++ +GV    GA++  +E G   +V  V+++DGS I AD +++GIG  P V     
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 324 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA-RVEHVDHARQSAQHCIKA 382
            G +    G+ VD   RT +  ++AIGD AA      D    R+E V +A   A    K 
Sbjct: 259 AGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKD 317
Query: 383 LLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWI 438
           +  A    Y   P+F+S  ++ +        Q  G + G    +   DP   +F +
Sbjct: 318 ICGAPV-PYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSV 365

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 164/349 (46%), Gaps = 18/349 (5%)
Query: 58  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 117
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 55
Query: 118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 177
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 56  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 107
Query: 178 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 235
           ATG      P   G  G      Y+R + DA+ +   L    +       YIG+EVAA A
Sbjct: 108 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 167
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 294
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V A
Sbjct: 168 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 227
Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 228 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 286
Query: 355 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 403
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 287 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 334

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 164/349 (46%), Gaps = 18/349 (5%)
Query: 58  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 117
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56
Query: 118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 177
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 57  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108
Query: 178 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 235
           ATG      P   G  G      Y+R + DA+ +   L    +       YIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 294
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228
Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287
Query: 355 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 403
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 335

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 135/298 (45%), Gaps = 18/298 (6%)
Query: 65  IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH 124
           I+G G      A+     G  +GR+ ++  E + PY+RP+L+K  L    ++P  L    
Sbjct: 7   IIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL---- 61
Query: 125 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 184
                       +WY E  I+M+    VT++D++ +T+  + G  L   ++++ATG  A 
Sbjct: 62  ---------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA- 111
Query: 185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 244
           R     G  LPGV  +R   D   L  S   A +        IG EVA  A    L  TI
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 245 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 304
           +   + LL R+    +      L  + GV+   G  +       +G++  V   DG +  
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFV 229
Query: 305 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
           AD+ +I +GA+P      + GL    G I VD    T   G+FA+GDVA++PL+   R
Sbjct: 230 ADSALICVGAEPADQLARQAGLACDRGVI-VDHCGATLAKGVFAVGDVASWPLRAGGR 286

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 144/332 (43%), Gaps = 29/332 (8%)
Query: 72  AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 128
           AG A+ +FV         G + +V  EA  PY+RP L+K ++   D +  RL     C  
Sbjct: 15  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 129 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 188
               ++ PE      +E +      S D +  T+  + G+ L YG+L++ATG      P 
Sbjct: 69  ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 189 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 248
             G  +P VH +R + DA  + + L    +        IG+E+AA A    +  +++  +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 307
             L+ R    +LA    + +   GV           E    G V   V L+DG+ I AD 
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 308 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 367
           +V+GIG     +     GL     GI VD   RT  P ++A+GDV      +  R  R+E
Sbjct: 231 VVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIE 289
Query: 368 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 399
              +A+       + L+      Y  LP+++S
Sbjct: 290 TWSNAQNQGIAVARHLVDPTAPGYAELPWYWS 321

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 144/332 (43%), Gaps = 29/332 (8%)
Query: 72  AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 128
           AG A+ +FV         G + +V  EA  PY+RP L+K ++   D +  RL     C  
Sbjct: 15  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 129 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 188
               ++ PE      +E +      S D +  T+  + G+ L YG+L++ATG      P 
Sbjct: 69  ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 189 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 248
             G  +P VH +R + DA  + + L    +        IG+E+AA A    +  +++  +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 307
             L+ R    +LA    + +   GV           E    G V   V L+DG+ I AD 
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 308 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 367
           +V+GIG     +     GL     GI VD   RT  P ++A+GDV      +  R  R+E
Sbjct: 231 VVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIE 289
Query: 368 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 399
              +A+       + L+      Y  LP+++S
Sbjct: 290 TWSNAQNQGIAVARHLVDPTAPGYAELPWYFS 321

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 49/372 (13%)
Query: 88  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 246
            +       R + D  +L     + K        ++G E+ A A+G K   L T +I  F
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 232
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
           PE   + ++    L+    +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETD 290
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 291 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR- 348
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 423
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG  
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG-Y 390
Query: 424 IEIGNFDPKIAT 435
           + IG  D  + T
Sbjct: 391 VAIGLVDSSLPT 402

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 88  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 75  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 246
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 251
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 310 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 367
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 368 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 408

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 88  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 246
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 232
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 291 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR- 348
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 389

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 88  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 80  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 246
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 256
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 315 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 372
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 373 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 413

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 157/358 (43%), Gaps = 48/358 (13%)
Query: 88  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 38  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 96  DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 246
            +       R + D  +L     + K        ++G E+ A A+G K   L T +I  F
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 214
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
           PE   + ++    L+    +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETD 272
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 273 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 330
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 331 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 371

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Query: 134 QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
           + PE+++  K +E + +    +ID     +E + L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTI 244
            + G  L GV  + ++ +A+ +  ++   +  K       +IG+E+A + A  W +DTT+
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 245 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 304
           +   + ++    + SL+Q      ++N V    G  +  LE G +G+VA V + D  T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 305 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
           AD +++  G  P        GL     G I VD + RT  P IFA GD    P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 37/315 (11%)
Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 196
           +WY+++GIE+   +    ID  ++ +IT  G+ + Y +L++ATG  A R P+     + G
Sbjct: 68  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 197 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
             Y   +R + DAD +  S+E + +       +IG+E+A           +I      L 
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313
                 L+   + + ++ GVKF   + +  LEA  +G      L +   I+    +  IG
Sbjct: 181 --LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG-----VLTNSGFIEGKVKICAIG 231
Query: 314 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 373
             P V    R G+++   GI +D  FRT    ++AIGD A +       +  +     A 
Sbjct: 232 IVPNVDLARRSGIHTGR-GILIDDNFRTSAKDVYAIGDCAEY-------SGIIAGTAKAA 283
Query: 374 QSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKI 433
                 +  +L  +   Y++   F S VF++     K+     G+  GE    G +    
Sbjct: 284 MEQARVLADILKGEPRRYNF--KFRSTVFKF----GKLQIAIIGNTKGE----GKWIEDN 333
Query: 434 ATFWIDSGKLKGVLV 448
              + ++GK+ G +V
Sbjct: 334 TKVFYENGKIIGAVV 348

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 20/231 (8%)
Query: 135 TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 189
           +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P  
Sbjct: 64  SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 190 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 244
               +PG     V+  ++  DA  L     KAK        YIG E+A A      +  +
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 245 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 304
           I     +L + F         + Y+ +GV  V G+ +   E   D  +   K  DG  I 
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 305 ADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           +D  ++ IG +P     + +V +  + G I  D    +    IFA GD AA
Sbjct: 236 SDIAILCIGFRPNTELLKGKVAMLDN-GAIITDEYMHSSNRDIFAAGDSAA 285

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 131/304 (43%), Gaps = 35/304 (11%)
Query: 63  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-----AYAPYERPALTKGYLFPLDKKP 117
           +VI+GG  A   AA   V +   D    +V+ E     +YA    P +  G +   +K  
Sbjct: 39  YVIIGGDAAGMSAAMQIVRN---DENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLI 95
Query: 118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKY 172
           AR                  +  + GI+   +  VT +D EK+ +     K        Y
Sbjct: 96  AR--------------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 173 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGME 230
             L++ATG      PE  G  L GVH ++ + DA+ ++ +LE  K +         IG+E
Sbjct: 142 DRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200
Query: 231 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 290
           +A   V       +I   +H +  ++   +A+   +   ++ ++ +   ++K  +     
Sbjct: 201 MAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE-- 257
Query: 291 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAI 349
           RV AV+ + G T  AD +++ +G KP     E   + ++  G I+V+   +T +  ++A 
Sbjct: 258 RVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAA 316
Query: 350 GDVA 353
           GD A
Sbjct: 317 GDCA 320

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 165 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 224
           +S +   + + I+ATG   SR  E     LP   +   + D+   ++  E  K       
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 225 XYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 284
            YIG+E+  A   +    TI+     +L   F   +A   ++  ++ GV+ V  A  K  
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA 237
Query: 285 EAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 340
           E   DG     +   +  TIDAD +++ +G +P       E++G+  ++ G I+VD Q R
Sbjct: 238 EEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 297
Query: 341 TRMPGIFAIGDVAAFP 356
           T +P IFAIGD+   P
Sbjct: 298 TSVPNIFAIGDIVPGP 313

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 27/224 (12%)
Query: 158 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 217
           E++ L+  +G+ L+   +++ATG +A   P         V Y R V   +AL S  E  K
Sbjct: 116 ERKVLVEETGEELEARYILIATG-SAPLIPP-----WAQVDYERVVTSTEAL-SFPEVPK 168
Query: 218 KXXXXXXXYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSL----AQRYEQLYQQNG 272
           +        IG+E+    V W +L   +I  E   + R+  P++    ++  E+++++ G
Sbjct: 169 RLIVVGGGVIGLELG---VVWHRLGAEVIVLE--YMDRIL-PTMDLEVSRAAERVFKKQG 222
Query: 273 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNS-S 329
           +    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E  GL++  
Sbjct: 223 LTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDE 280
Query: 330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT----ARVEHV 369
            G I VD   RTR+P I+AIGDV   P+  +  +    A VEH+
Sbjct: 281 RGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM 324

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%)
Query: 133 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 187
           R    +  + GI+   +  VT +D EK+ +     K        Y  L++ATG      P
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XP 155
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
           E  G  L GVH ++ + DA+ ++ +LE  K +         IG+E A   V        I
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXI 215
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              +H +  ++    A+   +   ++ ++ +   ++K  +     RV AV+ + G T  A
Sbjct: 216 ERNDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKA 271
Query: 306 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 354
           D +++ +G KP     E   + ++  G I+V+   +T +  ++A GD A 
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCAT 321

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 34/247 (13%)
Query: 134 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G   P  H +R++ D D ++ +++    +        +IG+E+  +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 246 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 291
                L  ++ TP    +A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 292 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 344
              +K      L +G  ++ D +++ IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDP 296
Query: 345 GIFAIGD 351
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 119 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 178
             PGF    G     +  E  K+ G    Y D  +  D  +  +I    K L   ++I+A
Sbjct: 52  NFPGFEXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIA 111
Query: 179 TGCTASRFPEKIGGYLPGVHYI--RDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 236
           TG       +KIG  +PG   +  R V+       +  K K+          +E      
Sbjct: 112 TGAEY----KKIG--VPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 165
Query: 237 GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
            +    TI+   + L  QR+         ++ ++ + + F+   ++K++    DG+V +V
Sbjct: 166 KFADKVTIVHRRDELRAQRILQ-------DRAFKNDKIDFIWSHTLKSINE-KDGKVGSV 217
Query: 296 KL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 350
            L   +DGS  T +AD + I IG KP  +PF+ +G+ + VG I       T +PGIFA G
Sbjct: 218 TLTSTKDGSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAG 277
Query: 351 DV 352
           DV
Sbjct: 278 DV 279

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308
           N+L+ R F  ++ +   +    NG++ +   +   +   +DG    V  E G T+D D +
Sbjct: 223 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 281
Query: 309 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 361
           ++ IG  P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+       P+ + +
Sbjct: 282 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 341
Query: 362 RTARVEHV--------DHAR 373
             A V+ V        DH R
Sbjct: 342 GAALVDTVFGNKPRKTDHTR 361

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308
           N+L+ R F  ++ +   +    NG++ +   +   +   +DG    V  E G T+D D +
Sbjct: 226 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 284
Query: 309 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 361
           ++ IG  P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+       P+ + +
Sbjct: 285 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 344
Query: 362 RTARVEHV--------DHAR 373
             A V+ V        DH R
Sbjct: 345 GAALVDTVFGNKPRKTDHTR 364

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 165 NSGKLLKYGSLIVATGCTASRFPEKIGGY------LPGVHYI---RDVADADALISSLEK 215
           N+ KLL  G  +     TA R    +GG+      LPG        +  D  AL  S+  
Sbjct: 121 NTVKLLASGKTV-----TAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILI 175
Query: 216 AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 275
           A         YI +E A    G  + TT+I+    +L R F     +      ++ G++ 
Sbjct: 176 A------GGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRI 228
Query: 276 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGG 332
           +    I+++ A +DGR  A   + G  + AD + + +G  P  +    E  G+ ++ +G 
Sbjct: 229 LCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEAAGVRTNELGA 287
Query: 333 IQVDGQFRTRMPGIFAIGDV 352
           I VD   RT  PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 283 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
            +EAG+ GR  V A       TI+   +T+++ +G          E VG  +N   G I 
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 335 VDGQFRTRMPGIFAIGDVAAFPLKM 359
           V  + +T +P I+AIGD+    L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 283 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
            +EAG+ GR  V A       TI+   +T+++ +G          E VG  +N   G I 
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 335 VDGQFRTRMPGIFAIGDVAAFPLKM 359
           V  + +T +P I+AIGD+    L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
           VT ID   Q +     ++ +Y  L++A G    R P + G     ++ I D+ D      
Sbjct: 83  VTGIDPGHQRIWIGEEEV-RYRDLVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQ 140
Query: 212 SLEKAKKXXXXXXXYIGMEVA--AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 269
           +    ++        IG E A   ++ G++LD  ++ P   ++  L  P+ A+  +   +
Sbjct: 141 AAAGKRRVLLLGAGLIGCEFANDLSSGGYQLD--VVAPCEQVMPGLLHPAAAKAVQAGLE 198
Query: 270 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 329
             GV+F  G  + +L+   +G  A   L DG  I  D +V  +G +P        GL  +
Sbjct: 199 GLGVRFHLGPVLASLKKAGEGLEA--HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN 256
Query: 330 VGGIQVDGQFRTRMPGIFAIGDVA 353
            G I VD   RT    I+A+GD A
Sbjct: 257 RG-IVVDRSLRTSHANIYALGDCA 279

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 189
           E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P K    
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 190 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 241
                     L  + +++   ++  +I+ LE    K+       YIG+E+A A      +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 242 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 301
             +I   +  L   +   L     +  +++G++   G ++K  E   +G+V  + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 302 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 360
             D D +++ +G +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 361 DRTAR 365
           D   R
Sbjct: 332 DNATR 336

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 189
           E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P K    
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 190 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 241
                     L  + +++   ++  +I+ LE    K+       YIG+E+A A      +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 242 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 301
             +I   +  L   +   L     +  +++G++   G ++K  E   +G+V  + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 302 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 360
             D D +++ +G +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 361 DRTAR 365
           D   R
Sbjct: 332 DNATR 336

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 15/204 (7%)
Query: 154 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 213
           +++++K+    N+ ++     ++VATG  A  FPE I G+  G        D+D      
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 214 EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 273
           E+ KK       YIG+E+A    G   +T ++     +L R F   +       Y + G+
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGI 241
Query: 274 KFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSP-FERVGLN-SSV 330
              K + I  +E   +     + + D  +I D D ++  IG K  +    E VG+  +S 
Sbjct: 242 NVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH 301
Query: 331 GGIQVDGQFRTRMPGIFAIGDVAA 354
             I  D    T +P I+++GDV  
Sbjct: 302 DQIIADEYQNTNVPNIYSLGDVVG 325

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
             P +FA+GD         D    +    +A +  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNL 313

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 214 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 271
Query: 283 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 272 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 331
Query: 335 VDGQFRTRMPGIFAIGDV 352
           V  + +T +P I+AIGD+
Sbjct: 332 VTDEEQTNVPYIYAIGDI 349

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 168 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXY 226
           +++   ++++ATG   + FP        G+    D   +     SL+K  +K        
Sbjct: 137 QVIDTKNILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGV 188
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
           IG+E+ +       D T +    H+        +++ ++++ Q+ G KF     +     
Sbjct: 189 IGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATK 248
Query: 287 GSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQ 338
            SDG++  V +E  S      I  D +++ IG +P       E +G+     G I V+ +
Sbjct: 249 KSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR 307
Query: 339 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 395
           F+T++P I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 308 FQTKIPNIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 168 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXY 226
           +++   ++++ATG   + FP        G+    D   +     SL+K  +K        
Sbjct: 137 QVIDTKNILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGV 188
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
           IG+E+ +       D T +    H+        +++ ++++ Q+ G KF     +     
Sbjct: 189 IGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATK 248
Query: 287 GSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQ 338
            SDG++  V +E  S      I  D +++ IG +P       E +G+     G I V+ +
Sbjct: 249 KSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR 307
Query: 339 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 395
           F+T++P I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 308 FQTKIPNIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 222 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 279
Query: 283 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 280 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 339
Query: 335 VDGQFRTRMPGIFAIGDV 352
           V  + +T +P I+AIGD+
Sbjct: 340 VTDEEQTNVPYIYAIGDI 357

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 283 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 335 VDGQFRTRMPGIFAIGDV 352
           V  + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 283 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 335 VDGQFRTRMPGIFAIGDV 352
           V  + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 174 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 232
           ++++ATG   + FP        G+    D   +     SL+K  +K        IG+E+ 
Sbjct: 164 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 215
Query: 233 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 292
           +       D T +    H+        +++ ++++ Q+ G KF     +      SDG++
Sbjct: 216 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 275
Query: 293 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 344
             V +E  S      I  D +++ IG +P       E +G+     G I V+ +F+T++P
Sbjct: 276 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 334
Query: 345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 395
            I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 335 NIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 376

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 134 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G   P  H +R++ D D ++ +++    +        +IG+E   +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 246 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 291
                L  ++ TP     A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 292 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 344
              +K      L +G  ++ D ++  IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 345 GIFAIGD 351
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 134 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G   P  H +R++ D D ++ +++    +        +IG+E   +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 246 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 291
                L  ++ TP     A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 292 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 344
              +K      L +G  ++ D ++  IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 345 GIFAIGD 351
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309
            ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D ++
Sbjct: 224 EMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVM 282
Query: 310 IGIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRT 363
           + IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  
Sbjct: 283 MAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAA 342
Query: 364 ARVEHV--------DHAR 373
           A V+ V        DH R
Sbjct: 343 ALVDTVFGTNPRKTDHTR 360

>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 49/301 (16%)
Query: 62  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 121
           + +I+G G A   AA+  +  G  D  + +++ E Y PY RP L +     +  K   + 
Sbjct: 11  KILILGAGPAGFSAAKAAL--GKCDD-ITMINSEKYLPYYRPRLNE-----IIAKNKSID 62
Query: 122 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 181
                       +  +WY++  I++I  +  TSID   + +   SG+ +KY  LI+A+G 
Sbjct: 63  DILI--------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGS 114
Query: 182 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK---KXXXXXXXYIGMEVAAAAV-- 236
            A++        +P    I  +   D  +   ++ K   K        +G+E+A A +  
Sbjct: 115 IANKIK------VPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS 168
Query: 237 GWKLDTTII--FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 294
           G      II  +P    L R     L  + ++L    G+K    ++ + +          
Sbjct: 169 GTPASIGIILEYPLERQLDRDGGLFLKDKLDRL----GIKIYTNSNFEEM---------- 214
Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
                G  I +  ++  +G KP +   +   + +S  GI V+    T +  I+A GDVA 
Sbjct: 215 -----GDLIRSSCVITAVGVKPNLDFIKDTEI-ASKRGILVNDHMETSIKDIYACGDVAE 268
Query: 355 F 355
           F
Sbjct: 269 F 269

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 311 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTA 364
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 343
Query: 365 RVEHV--------DHAR 373
            V+ V        DH R
Sbjct: 344 LVDTVFGTTPRKTDHTR 360

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 226 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 284
Query: 311 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 364
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 285 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 344
Query: 365 RVEHV--------DHAR 373
            V+ V        DH R
Sbjct: 345 LVDTVFGTTPRKTDHTR 361

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 224 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 282
Query: 311 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 364
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 283 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 342
Query: 365 RVEHV--------DHAR 373
            V+ V        DH R
Sbjct: 343 LVDTVFGTTPRKTDHTR 359

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 157 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 216
           ++ +TL  N G+ +    +++ATG   S  P+     +PGV Y     D+D   +     
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 217 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           ++       YI +E+A    G    T + F   H   R F P +++   ++    G +  
Sbjct: 168 ERVAVVGAGYIAVELAGVINGLGAKTHL-FVRKHAPLRSFDPMISETLVEVMNAEGPQLH 226
Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-I 333
             A  K +   +DG +  ++LEDG +   D ++  IG +P       E  G+ ++  G I
Sbjct: 227 TNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI 285
Query: 334 QVDGQFRTRMPGIFAIGD 351
            VD    T + GI+A+GD
Sbjct: 286 VVDKYQNTNIEGIYAVGD 303

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 27/241 (11%)
Query: 163 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKXXX 221
           I     ++K   +I+ATG             LPGV    + +  +   ++  E  KK   
Sbjct: 131 IEGENTVVKGKHIIIATGSDVKS--------LPGVTIDEKKIVSSTGALALSEIPKKLVV 182
Query: 222 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
               YIG+E+ +       + T++   + ++  +    + +++++  ++ G+KF     +
Sbjct: 183 IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKV 241
Query: 282 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQV 335
             ++   DG    V+   G   + I+AD +++  G  P  S    +++G+ +  +G I V
Sbjct: 242 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILV 301
Query: 336 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYL 394
           + +F T + G++AIGDV   P+  +           A +    C++ L     H  YD +
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAH----------KAEEDGVACVEYLAGKVGHVDYDKV 351
Query: 395 P 395
           P
Sbjct: 352 P 352

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
            V
Sbjct: 290 SV 291

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
            V
Sbjct: 290 SV 291

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
            V
Sbjct: 290 SV 291

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
            V
Sbjct: 290 SV 291

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
            V
Sbjct: 290 SV 291

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 120
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 178 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 230
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 290
Query: 365 RV 366
            V
Sbjct: 291 SV 292

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
            V
Sbjct: 290 SV 291

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 169 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 227
           LL    +++ATG    R+P ++ G L  G+        +D +    E   K       Y+
Sbjct: 171 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 222
Query: 228 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 287
            +E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++  
Sbjct: 223 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 280
Query: 288 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGL--NSSVGGIQVDGQ 338
              ++  V  ED +     T   DT++  IG  P       E+ G+  N     I VD Q
Sbjct: 281 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 339
Query: 339 FRTRMPGIFAIGDVA 353
             T +P I+AIGDVA
Sbjct: 340 EATSVPHIYAIGDVA 354

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 169 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 227
           LL    +++ATG    R+P ++ G L  G+        +D +    E   K       Y+
Sbjct: 145 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 196
Query: 228 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 287
            +E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++  
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 254
Query: 288 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGL--NSSVGGIQVDGQ 338
              ++  V  ED +     T   DT++  IG  P       E+ G+  N     I VD Q
Sbjct: 255 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 313
Query: 339 FRTRMPGIFAIGDVA 353
             T +P I+AIGDVA
Sbjct: 314 EATSVPHIYAIGDVA 328

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 25/214 (11%)
Query: 152 VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVH------YI 200
           V  I+ E++T+      TN      Y  LI++ G       + I   +PG+        +
Sbjct: 116 VVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA------KPIVPSIPGIEEAKALFTL 169
Query: 201 RDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTP 258
           R+V D D + + ++  K +        +IG+E         ++ T++   N +   +   
Sbjct: 170 RNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLVEXANQVXPPIDYE 229
Query: 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 318
             A  +E   + + V+ V    +  LE       A V+L+ GS I  D +++ IG +P  
Sbjct: 230 XAAYVHEHX-KNHDVELVFEDGVDALEENG----AVVRLKSGSVIQTDXLILAIGVQPES 284
Query: 319 SPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGD 351
           S  +  GL   V G I+V+ +F+T  P I+AIGD
Sbjct: 285 SLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 27/204 (13%)
Query: 157 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 216
           ++ +TL  N G+ +    +++ATG   S  P+     +PGV Y     D+D   +     
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 217 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPSLAQRYEQLYQQ 270
           ++       YIG+E+     G    T       HL +        F P +++   ++   
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKT-------HLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNS 328
            G +    A  K +   +DG +  ++LEDG +   D ++  IG +P       E  G+ +
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 329 SVGG-IQVDGQFRTRMPGIFAIGD 351
           +  G I VD    T + GI+A+GD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 288 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 343
           S+G +  V L   DGS  T++AD ++I IG K  + P  R  L      + VD   +T +
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 344 PGIFAIGDVAAFPLKM 359
            G++A GD+A +P K+
Sbjct: 291 DGLYAAGDIAYYPGKL 306

>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)
Query: 135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI- 190
           T E  + + I+++    V + D+E Q +        +   Y  LI+ATG  AS+F  +I 
Sbjct: 64  TEEELRRQKIQLLLNREVVAXDVENQLIAWTRKEEQQWYSYDKLILATG--ASQFSTQIR 121
Query: 191 GGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENH 250
           G     +   + ++ A A +  LE ++         IG E     V  K    +     +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXEAIDFLVKXKKTVHVFESLEN 181
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
           LL + F        ++  ++  V F    ++  +E  ++G V     ++   I  D+ + 
Sbjct: 182 LLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCDSGIF 238
Query: 311 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 351
            +   P ++  ++    +    I VD   +T +P +FAIGD
Sbjct: 239 ALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGD 279

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKP 316
           +A++ ++   + G+ F  GA +       DG       VK  + +T+DA+ ++I  G KP
Sbjct: 241 VAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKP 300
Query: 317 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
           +       + G+   S G +++D  F+T + G++AIGDV   P
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 233
           +I+A+G   ++        LPGV Y     D     +S  K  +        YIG+E+A+
Sbjct: 136 MIIASGAETAKLR------LPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIAS 189
Query: 234 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 293
                 + T II   +  L  L    +      + + N +KF   + +  ++   D    
Sbjct: 190 IFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLN-IKF--NSPVTEVKKIKDDEYE 246
Query: 294 AV-KLEDGS--TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDGQFRTRMPGIFAI 349
            +   +DGS  +I  +++V+  G +P +    R +GL+ S  GI VD   +T +P +FA 
Sbjct: 247 VIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFAT 306
Query: 350 GD 351
           GD
Sbjct: 307 GD 308

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 11/180 (6%)
Query: 194 LPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
            P V  I +   +D   + ++++KK       YI +E+        +D+ I    N +L+
Sbjct: 155 FPPVKGIENTISSDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR 213
Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGI 312
           + F  S+    E   ++N +  V  A +  ++  SD  ++ + L DG   +  D ++  +
Sbjct: 214 K-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 271
Query: 313 GAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 370
           G  P       E++ + ++   I VD   RT +  I+A+GD       M  ++  +E ++
Sbjct: 272 GRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCC-----MVKKSKEIEDLN 326

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 285
           YIG+E+  A        +++     +L   +   L     +  ++ G+    G S++  E
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 286 AG----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG--IQVDGQF 339
            G    +DG+   ++LE      AD +++ +G +P    F    L+  + G  I +D + 
Sbjct: 240 NGCLLANDGKGGQLRLE------ADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 340 RTRMPGIFAIGDVAAFPLKMYDRTARVEHV 369
           +T M  ++AIGDVA  P+  +   A+ E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 156 DIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 215
           D+ K+  +T      KY  +++ATGC     P+ + G        ++++     I SL+K
Sbjct: 177 DLSKEETVTG-----KY--ILIATGCRP-HIPDDVEG-------AKELSITSDDIFSLKK 221
Query: 216 AK-KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 274
              K       Y+ +E +        D T+      ++ R F    A + +   ++ GV 
Sbjct: 222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--IVLRGFDQQCAVKVKLYMEEQGVM 279
Query: 275 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG-- 332
           F  G   K L    D  +  V+  D ++   DT++  IG K  +       LN +V    
Sbjct: 280 FKNGILPKKLTKMDDKIL--VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSN 337
Query: 333 --IQVDGQFRTRMPGIFAIGDVA 353
             I  D    T +P IFA+GDVA
Sbjct: 338 NKIIADHLSCTNIPSIFAVGDVA 360

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 206 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265
           +D   +  ++ K+       YIG+E+A     +  + T++  E+ LL + F P L+    
Sbjct: 156 SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLA 214
Query: 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGIGAKPTVSPF--E 322
           +     G++     ++  LE   D +   +  +DG+ ++  D+++  +G  P       E
Sbjct: 215 ENMHAQGIETHLEFAVAALE--RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLE 272
Query: 323 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 352
             G+   S G +  D    T +PG++A+GD+
Sbjct: 273 AAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	497
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-108
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	1e-104
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	1e-102
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-101
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-101
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	1e-101
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	9e-67
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-61
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	7e-05
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	1e-53
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	5e-48
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	2e-47
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	1e-45
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	4e-45
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	1e-44
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	8e-44
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	9e-44
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	2e-43
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	3e-42
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-40
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	1e-26
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-26
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	2e-26
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	5e-26
4dna_A	463	Probable glutathione reductase; structural genomic	2e-25
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-25
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	2e-24
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	9e-24
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-23
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	3e-05
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	6e-23
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-07
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-22
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	2e-22
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	4e-22
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	1e-21
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-21
4fk1_A	304	Putative thioredoxin reductase; structural genomic	2e-21
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	4e-21
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	4e-07
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	8e-21
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-20
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	3e-20
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	3e-20
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	6e-19
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	7e-19
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-18
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	8e-18
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-17
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	2e-17
1ojt_A	482	Surface protein; redox-active center, glycolysis,	3e-17
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	3e-17
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	8e-17
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	9e-17
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	2e-16
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-16
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	4e-16
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	8e-16
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	2e-15
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	2e-15
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	3e-15
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	7e-15
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	1e-14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	3e-14
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-13
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	9e-04
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	5e-13
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	1e-11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	4e-11
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	1e-10
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3r9u_A	315	Thioredoxin reductase; structural genomics, center	9e-09
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	4e-08
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	4e-07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	1e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	5e-06
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	5e-06
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	3e-04
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	3e-04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	4e-04

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  329 bits (845), Expect = e-108
 Identities = 103/436 (23%), Positives = 177/436 (40%), Gaps = 41/436 (9%)

Query: 59  ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA 118
            +  F+++GGG AA  AAR+         R+ IVS++   PY RP L+K         P 
Sbjct: 10  SHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELW--FSDDPN 66

Query: 119 RLPGFHTCVGSGGER----QTPEWY---------KEKGIEMIYQDPVTSIDIEKQTLITN 165
                     +G ER    Q P +Y         +  G+ ++    V  +D+    +  N
Sbjct: 67  VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126

Query: 166 SGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVV 222
            G  + Y   ++ATG T       ++ G  +       R + D  +L     + K + ++
Sbjct: 127 DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITII 186

Query: 223 GGGYIGMEVAAA----AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG 278
           GGG++G E+A A    A     +   +FPE   + ++    L+    +  ++ GVK +  
Sbjct: 187 GGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPN 246

Query: 279 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL--NSSVGGIQVD 336
           A ++++          +KL+DG  ++ D IV  +G +P V   +  GL  +S  GG +V+
Sbjct: 247 AIVQSVGV--SSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVN 304

Query: 337 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPY 396
            + + R   I+  GD A F      R  RVEH DHA  S +   + +  A    Y +   
Sbjct: 305 AELQAR-SNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAAKP-YWHQSM 361

Query: 397 FYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIA-----TFWIDSGKLKGVLVESG 451
           F+S +   +     V ++  G        +G F    A     +    SG       E+ 
Sbjct: 362 FWSDLG-PD-----VGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETE 415

Query: 452 SPEEFQLLPTLARSQP 467
           S      +P    + P
Sbjct: 416 SEASEITIPPSTPAVP 431

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  318 bits (817), Expect = e-104
 Identities = 123/446 (27%), Positives = 199/446 (44%), Gaps = 30/446 (6%)

Query: 58  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 117
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL    K  
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASG-WEGNIRLVGDATVIPHHLPPLSKAYL--AGKAT 58

Query: 118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 177
           A      T          P+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 59  AESLYLRT----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108

Query: 178 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 235
           ATG      P   G  G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168

Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE-AGSDGRVAA 294
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E +    +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287

Query: 355 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQ 414
           F  ++YDR  R+E V +A + A+     L        +  P+F+S  +E       +  +
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARKIAAILCGKVP-RDEAAPWFWSDQYE-----IGL--K 339

Query: 415 FFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK 471
             G + G    I  G+   P  + F++   ++  V      P EF     +   +  V+ 
Sbjct: 340 MVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAV-DTVNRPVEFNQSKQIITDRLPVEP 398

Query: 472 AKLQQAS-SVEEALEIARAALPVEAA 496
             L   S  ++E +  A+A L    A
Sbjct: 399 NLLGDESVPLKEIIAAAKAELSSAPA 424

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  311 bits (799), Expect = e-102
 Identities = 112/418 (26%), Positives = 182/418 (43%), Gaps = 29/418 (6%)

Query: 60  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 119
           N   +I G G+A    A +  +     GR+ +++ E + PY+RP L+K YL         
Sbjct: 1   NDTVLIAGAGHAGFQVAVSLRQAK-YPGRIALINDEKHLPYQRPPLSKAYL--KSGGDPN 57

Query: 120 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 179
              F             ++++++ IE+I  D + SID E + L+  SG  ++YG L++AT
Sbjct: 58  SLMFRP----------EKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLAT 106

Query: 180 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 239
           G             LP V Y+R + +++ L   +   K VVV+G G+IG+E AA A    
Sbjct: 107 GARNRMLDVP-NASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKG 165

Query: 240 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 299
           L+  ++     ++ R+ TP ++  +   +   G++   G     +      RV  V L D
Sbjct: 166 LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIA-AEGDRVTGVVLSD 224

Query: 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 359
           G+T+  D +V+G+G  P V      GL ++  GI VD Q  T  P I AIGD A F    
Sbjct: 225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESVR 283

Query: 360 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 419
           +  T RVE V +A   A+     L       YD  P+F+S   +      K+  Q  G  
Sbjct: 284 FGETMRVESVQNATDQARCVAARLT-GDAKPYDGYPWFWSDQGD-----DKL--QIVGLT 335

Query: 420 VG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 474
            G  + +  G+      + F   +GKL G+        +      +      V   + 
Sbjct: 336 AGFDQVVIRGSVAERSFSAFCYKAGKLIGI-ESVNRAADHVFGRKILPLDKSVTPEQA 392

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  307 bits (790), Expect = e-101
 Identities = 102/435 (23%), Positives = 174/435 (40%), Gaps = 38/435 (8%)

Query: 60  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 119
               V++G G A+        + G   G + +V  EA  PY+RP L+K ++         
Sbjct: 7   KAPVVVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFM--------- 56

Query: 120 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 179
                       E+   +  +   +E +      S D +  T+  + G+ L YG+L++AT
Sbjct: 57  -------AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLAT 109

Query: 180 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 239
           G      P  + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    
Sbjct: 110 GAAPRALPT-LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG 168

Query: 240 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 299
           +  +++  +  L+ R    +LA    + +   GV      S+      +      V L+D
Sbjct: 169 VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV------TGSVDGVVLLDD 222

Query: 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 359
           G+ I AD +V+GIG     +     GL     GI VD   RT  P ++A+GDV      +
Sbjct: 223 GTRIAADMVVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPL 281

Query: 360 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 419
             R  R+E   +A+       + L+      Y  LP+++S          ++  Q  G  
Sbjct: 282 SGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGA-----LRI--QVAGLA 334

Query: 420 VG-ETIEIGNFDP---KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQ 475
            G E I  G       K     +  G++ G      +  +F  L  L       D+A L 
Sbjct: 335 SGDEEIVRGEVSLDAPKFTLIELQKGRIVGA-TCVNNARDFAPLRRLLAVGAKPDRAALA 393

Query: 476 QAS-SVEEALEIARA 489
             +  + +      A
Sbjct: 394 DPATDLRKLAAAVAA 408

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  307 bits (790), Expect = e-101
 Identities = 120/426 (28%), Positives = 200/426 (46%), Gaps = 30/426 (7%)

Query: 54  SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 113
           S    E  + VIVG G+    AA    ++G  +GR+ ++ +E   PYERP L+K YL   
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNG-FEGRVLVIGREPEIPYERPPLSKEYL--A 59

Query: 114 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 173
            +K                    +++++K +EM     V S+D    T+    G  ++YG
Sbjct: 60  REKTFERICIRP----------AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYG 109

Query: 174 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVA 232
            LI ATG    R    +G  L GVH +R   DAD L++ L+  AK  VV+GGGYIG+E A
Sbjct: 110 KLIWATGGDPRRLSC-VGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAA 168

Query: 233 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 292
           A    + ++ T++     +L R+   +L++ Y+  ++ +GV    GA++  +E G   +V
Sbjct: 169 AVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTKV 227

Query: 293 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 352
             V+++DGS I AD +++GIG  P V      G +    G+ VD   RT +  ++AIGD 
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDC 286

Query: 353 AAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKV 411
           AA      D    R+E V +A   A    K +  A    Y   P+F+S  ++      K+
Sbjct: 287 AAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV-PYKATPWFWSNQYD-----LKL 340

Query: 412 WWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 468
             Q  G + G    +  G+      +  ++  GK+  +       +++     L  ++  
Sbjct: 341 --QTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVAL-DCVNMVKDYVQGKKLVEARAQ 397

Query: 469 VDKAKL 474
           +   +L
Sbjct: 398 IAPEQL 403

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  307 bits (790), Expect = e-101
 Identities = 109/415 (26%), Positives = 185/415 (44%), Gaps = 31/415 (7%)

Query: 63  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 122
             I+G G      A+     G  +GR+ ++  E + PY+RP+L+K  L    ++P  L  
Sbjct: 5   VAIIGNGVGGFTTAQALRAEG-FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL-- 61

Query: 123 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 182
                         +WY E  I+M+    VT++D++ +T+  + G  L   ++++ATG  
Sbjct: 62  -----------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSR 110

Query: 183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 242
           A       G  LPGV  +R   D   L  S   A ++++VGGG IG EVA  A    L  
Sbjct: 111 ARTMALP-GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSV 169

Query: 243 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 302
           TI+   + LL R+    +      L  + GV+   G  +       +G++  V   DG +
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRS 227

Query: 303 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
             AD+ +I +GA+P      + GL     G+ VD    T   G+FA+GDVA++PL+   R
Sbjct: 228 FVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRAGGR 286

Query: 363 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 421
              +E   +A++ A     A+L         LP  ++ +        ++  Q  GD  G 
Sbjct: 287 R-SLETYMNAQRQAAAVAAAILGKNVS-APQLPVSWTEIAG-----HRM--QMAGDIEGP 337

Query: 422 -ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 474
            + +  G         F +   +++ V V   +P +F L   L  ++  ++ A+L
Sbjct: 338 GDFVSRGMPGSGAALLFRLQERRIQAV-VAVDAPRDFALATRLVEARAAIEPARL 391

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  218 bits (559), Expect = 9e-67
 Identities = 75/340 (22%), Positives = 130/340 (38%), Gaps = 29/340 (8%)

Query: 58  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 117
           +E    VI+G G A    AR + +    +  L +++ +    Y +P L+ G+    +K  
Sbjct: 2   SERAPLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFS--KNKDA 58

Query: 118 ARLPGFHTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 176
             L               P    ++    ++    VT ID   Q +     ++ +Y  L+
Sbjct: 59  DGL-----------AMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRDLV 106

Query: 177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 236
           +A G    R P + G     ++ I D+ D      +    ++V+++G G IG E A    
Sbjct: 107 LAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLS 165

Query: 237 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 296
                  ++ P   ++  L  P+ A+  +   +  GV+F  G  + +L+    G      
Sbjct: 166 SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKK--AGEGLEAH 223

Query: 297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAAF 355
           L DG  I  D +V  +G +P        GL  +V  GI VD   RT    I+A+GD A  
Sbjct: 224 LSDGEVIPCDLVVSAVGLRPRTELAFAAGL--AVNRGIVVDRSLRTSHANIYALGDCAEV 281

Query: 356 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 395
                       +V      A+   + L    +    Y P
Sbjct: 282 DGLNL------LYVMPLMACARALAQTLAGNPS-QVAYGP 314

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  205 bits (523), Expect = 2e-61
 Identities = 76/424 (17%), Positives = 147/424 (34%), Gaps = 58/424 (13%)

Query: 57  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 116
            +++ + +I+G G A   AA+  +        + +++ E Y PY RP L    +   +K 
Sbjct: 6   HHKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLN--EIIAKNKS 60

Query: 117 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 176
              +                +WY++  I++I  +  TSID   + +   SG+ +KY  LI
Sbjct: 61  IDDIL-IKK----------NDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLI 109

Query: 177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 236
           +A+G  A++    +      +  +    DA  +    +   K  ++GGG +G+E+A A +
Sbjct: 110 IASGSIANKIK--VPH-ADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAII 166

Query: 237 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 296
                 +I     + L+R          +    + G+K    ++ +              
Sbjct: 167 DSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFE-------------- 212

Query: 297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
            E G  I +  ++  +G KP +   +   + S   GI V+    T +  I+A GDVA F 
Sbjct: 213 -EMGDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHMETSIKDIYACGDVAEFY 270

Query: 357 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYE-GSPRKVWWQ 414
            K                +  +        +  +Y   +P    +V      S       
Sbjct: 271 GKNPGLINIA--NKQGEVAGLN-----ACGEDASYSEIIPSPILKVSGISIIS------- 316

Query: 415 FFGDNVGETIEIGNFDPKIATF---WIDSGKLKG-VLVESGSPEEFQLLPTLARSQPFVD 470
             GD             +   +    +   K+    ++  G       L     S    D
Sbjct: 317 -CGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAVI--GDVSLGTKLKKAIDSSKSFD 373

Query: 471 KAKL 474
               
Sbjct: 374 NISS 377

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 211 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------LLQRLFT-----PS 259
               K+ K++++G G  G   A AA+G   D T+I  E +       L  +         
Sbjct: 4   HHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDD 63

Query: 260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 319
           +  +    Y++N +K +      +++   + ++  V L+ G  I  + ++I  G+     
Sbjct: 64  ILIKKNDWYEKNNIKVITSEFATSIDP--NNKL--VTLKSGEKIKYEKLIIASGSIANKI 119

Query: 320 PFE 322
              
Sbjct: 120 KVP 122

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  183 bits (467), Expect = 1e-53
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 33/298 (11%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
           VIVG G      A+   +       + ++ KE    Y +P L+  +         RL   
Sbjct: 12  VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLS--HYIAGFIPRNRL--- 62

Query: 124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 183
                      + +WY+++GIE+   +    ID  ++ +IT  G++  Y +L++ATG  A
Sbjct: 63  --------FPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATGARA 113

Query: 184 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 243
                 I G    +  +R + DAD +  S+E + + +++GGG+IG+E+A           
Sbjct: 114 REPQ--IKG-KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVK 170

Query: 244 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 303
           +I      L       L+   + + ++ GVKF   + +   EA  +G      L +   I
Sbjct: 171 LIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFI 221

Query: 304 DADTIVIGIGAKPTVSPFERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAAFPLKMY 360
           +    +  IG  P V    R G+    G GI +D  FRT    ++AIGD A +   + 
Sbjct: 222 EGKVKICAIGIVPNVDLARRSGI--HTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIA 277

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  171 bits (435), Expect = 5e-48
 Identities = 63/229 (27%), Positives = 95/229 (41%), Gaps = 14/229 (6%)

Query: 134 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 188
            +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P 
Sbjct: 63  SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV-PP 121

Query: 189 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248
             G     V+  ++  DA  L     KAK + ++G GYIG E+A A      +  +I   
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGH 181

Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308
             +L + F         + Y+ +GV  V G+ +   E   D  +      DG  I +D  
Sbjct: 182 ERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITK-TLDGKEIKSDIA 239

Query: 309 VIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           ++ IG +P     +    +  N   G I  D    +    IFA GD AA
Sbjct: 240 ILCIGFRPNTELLKGKVAMLDN---GAIITDEYMHSSNRDIFAAGDSAA 285

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  169 bits (430), Expect = 2e-47
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 134 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI 190
            T E  + + I+++    V ++D+E Q +        +   Y  LI+ATG +      + 
Sbjct: 63  ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR- 121

Query: 191 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 250
           G     +   + ++ A A +  LE ++ V V+G G IGME     V  K    +     +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN 181

Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
           LL + F   +    ++  ++  V F    ++  +E         +       I  D+ + 
Sbjct: 182 LLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIE--ETANGIVL-ETSEQEISCDSGIF 238

Query: 311 GIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
            +   P ++  +   +  L+     I VD   +T +P +FAIGD  +
Sbjct: 239 ALNLHPQLAYLDKKIQRNLD---QTIAVDAYLQTSVPNVFAIGDCIS 282

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  164 bits (418), Expect = 1e-45
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 17/231 (7%)

Query: 134 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 188
            T E  + +G+ +     +T+I  ++       L++   ++  Y  LI++ G        
Sbjct: 61  MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120

Query: 189 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 246
             G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I 
Sbjct: 121 P-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
             +  L             +  + N +    G +++  E   DGRV  V + D +  DAD
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 236

Query: 307 TIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
            +V+ +G +P  +  +    +  N   G I+ D   RT  P +FA+GD   
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPN---GLIKTDEYMRTSEPDVFAVGDATL 284

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  163 bits (415), Expect = 4e-45
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 134 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 187
           + PE+++    +E + +    +ID    T     L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129

Query: 188 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG-WKLDTT 243
             + G  L GV  + ++ +A+ +  ++   +  K V+VGGG+IG+E+A +    W +DTT
Sbjct: 130 --VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTT 187

Query: 244 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 303
           ++   + ++    + SL+Q      ++N V    G  +  LE G +G+VA V + D  T+
Sbjct: 188 VVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTL 245

Query: 304 DADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           DAD +++  G  P        GL     G I VD + RT  P IFA GD   
Sbjct: 246 DADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  162 bits (413), Expect = 1e-44
 Identities = 56/239 (23%), Positives = 106/239 (44%), Gaps = 24/239 (10%)

Query: 134 QTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFP--- 187
              E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P   
Sbjct: 97  SDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKG 156

Query: 188 -------EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGW 238
                   +    L  + +++   ++  +I+ LE    K+V VVG GYIG+E+A A    
Sbjct: 157 AEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRK 216

Query: 239 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 298
             +  +I   +  L   +   L     +  +++G++   G ++K +    +G+V  + + 
Sbjct: 217 GKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-IT 273

Query: 299 DGSTIDADTIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           D +  D D +++ +G +P  +       +  N   G   V+ +  T +PG++AIGD A 
Sbjct: 274 DKNEYDVDMVILAVGFRPNTTLGNGKIDLFRN---GAFLVNKRQETSIPGVYAIGDCAT 329

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  162 bits (411), Expect = 8e-44
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 14/229 (6%)

Query: 134 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 187
           QT E   ++  +++     V  I+ E++T     + TN      Y  LI++ G       
Sbjct: 97  QTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS 156

Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 245
                    +  +R+V D D + + ++  K +   V+GGG+IG+E+        ++ T++
Sbjct: 157 IPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216

Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              N ++       +A    +  + + V+ V    +  LE   +G V  V+L+ GS I  
Sbjct: 217 EMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALE--ENGAV--VRLKSGSVIQT 271

Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 353
           D +++ IG +P  S  +  GL     G I+V+ +F+T  P I+AIGD  
Sbjct: 272 DMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAI 320

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  159 bits (405), Expect = 9e-44
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 134 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIG 191
             PE + +K GI++     V  +D            K  ++  L+ A G +    P   G
Sbjct: 63  YPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQV-PAIEG 121

Query: 192 GYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249
             L GV       DA A+   +E  K + VV++GGGYIG+E+A A      + T+I    
Sbjct: 122 VNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE 181

Query: 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309
            +L+R F   +    E+   +  V          +E   + RV  V + D     A+ ++
Sbjct: 182 RVLRRSFDKEVTDILEEKL-KKHVNLRLQEITMKIE--GEERVEKV-VTDAGEYKAELVI 237

Query: 310 IGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           +  G KP +   +++G+     G I  + + +T +  ++A GDVA 
Sbjct: 238 LATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAE 283

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  159 bits (405), Expect = 2e-43
 Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 134 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 187
           +  + +++K GI+   +  VT +D EK+        T       Y  L++ATG       
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE 156

Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 245
            + G  L GVH ++ + DA+ ++ +LE  K + V ++GGG IG+E+A   V       +I
Sbjct: 157 WE-GRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215

Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              +H+   ++   +A+   +   ++ ++ +   ++K  +   + RV AV+  D  T  A
Sbjct: 216 ERNDHIG-TIYDGDMAEYIYKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKA 271

Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           D +++ +G KP     E   +  +  G I+V+   +T +  ++A GD A 
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  154 bits (393), Expect = 3e-42
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 20/230 (8%)

Query: 134 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 187
            TPE + ++  I +     V +I+ E+QT       TN      Y  LI++ G +     
Sbjct: 62  YTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS----A 117

Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 245
             +G        +R++ D DA+   ++  +  KV+VVG GY+ +EV        L  T+I
Sbjct: 118 NSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177

Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              + +  +L    + Q       +  + +     I  +  G++     +  + G     
Sbjct: 178 HRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEINAIN-GNE-----ITFKSGKVEHY 230

Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 354
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A 
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  152 bits (386), Expect = 2e-40
 Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 32/249 (12%)

Query: 134 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 187
           QTPE +K +  +E+  +  V +ID   +      L+  S     Y +L+++ G      P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP 121

Query: 188 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 244
             I G   P  H +R++ D D ++ +++    +   VVGGG+IG+E+  +     + TT+
Sbjct: 122 --IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTL 179

Query: 245 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE------------------A 286
           +   + ++       +A    Q  +  GV    G ++  +                    
Sbjct: 180 LELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238

Query: 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPG 345
              G ++   L +G  ++ D +++ IG +P        GL    +GGI+V+   +T  P 
Sbjct: 239 HIKGHLSLT-LSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPA 297

Query: 346 IFAIGDVAA 354
           I+A+GD   
Sbjct: 298 IYAVGDAVE 306

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  111 bits (281), Expect = 1e-26
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 25/211 (11%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKKVVVVGGGYIGME 230
           ++A G      P      + G+            ISS     ++++KK+ +VG GYI +E
Sbjct: 146 LIAVGNKPVFPP------VKGIENT---------ISSDEFFNIKESKKIGIVGSGYIAVE 190

Query: 231 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 290
           +        +D+ I    N +L R F  S+    E   ++N +  V  A +  ++  SD 
Sbjct: 191 LINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK 249

Query: 291 RVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIF 347
            ++ + L DG      D ++  +G  P       E++ + ++   I VD   RT +  I+
Sbjct: 250 NLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIY 308

Query: 348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQH 378
           A+GD              +  + +  +    
Sbjct: 309 AVGDCCMVKKSKEIEDLNLLKLYNEERYLNK 339

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  111 bits (280), Expect = 1e-26
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 163 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 216
           ++ +G+ +    +++ATG             + G             ++S     LEK  
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSA-----IKGSDLC---------LTSNEIFDLEKLP 191

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           K +V+VGGGYIG+E A    G  + TT++   + +L R F   L Q         G+  +
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250

Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 332
             A++  +++  +     V L +G TI AD +++  G  P  +    ER G  +N   G 
Sbjct: 251 YEATVSQVQSTENCYN--VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEF-GA 307

Query: 333 IQVDGQFRTRMPGIFAIGDV 352
           + VD +  T +  I+A+GDV
Sbjct: 308 VVVDEKMTTNVSHIWAVGDV 327

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  110 bits (278), Expect = 2e-26
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 229
           ++ATG   S  P+     +PGV Y          I S     L    ++V VVG GYIG+
Sbjct: 136 LIATGGRPSH-PD-----IPGVEYG---------IDSDGFFALPALPERVAVVGAGYIGV 180

Query: 230 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 289
           E+     G    T +    +  L   F P +++   ++    G +    A  K +   +D
Sbjct: 181 ELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD 239

Query: 290 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPG 345
           G +  ++LEDG +   D ++  IG +P       E  G   N   G I VD    T + G
Sbjct: 240 GSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEK-GYIVVDKYQNTNIEG 297

Query: 346 IFAIGDV 352
           I+A+GD 
Sbjct: 298 IYAVGDN 304

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  109 bits (275), Expect = 5e-26
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 31/190 (16%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 229
           ++ATG      P      +PG+ +          ISS     L +  ++V+ VGGG+I +
Sbjct: 160 LLATGSWPQM-PA-----IPGIEHC---------ISSNEAFYLPEPPRRVLTVGGGFISV 204

Query: 230 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
           E A    A        T+ +  N +L R F  ++ +   +    NG++ +   +   +  
Sbjct: 205 EFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGIEIMTNENPAKVSL 263

Query: 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 342
            +DG    V  E G T+D D +++ IG  P  +      VG  L    GG+QVD   RT 
Sbjct: 264 NTDGSKH-VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK-GGVQVDEFSRTN 321

Query: 343 MPGIFAIGDV 352
           +P I+AIGD+
Sbjct: 322 VPNIYAIGDI 331

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  107 bits (271), Expect = 2e-25
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 163 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 216
           +  SGK +    +++A G   S   + +    PG             I+S     L    
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSP-HDAL----PGHELC---------ITSNEAFDLPALP 170

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           + +++ GGGYI +E A    G  + TT+I+    +L   F   + +      ++ G++ +
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229

Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 332
               I+++ A +DGR           I AD +++ +G  P  +    E  G   N   G 
Sbjct: 230 CEDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNEL-GA 287

Query: 333 IQVDGQFRTRMPGIFAIGDV 352
           I VD   RT  PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  108 bits (272), Expect = 2e-25
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 31/190 (16%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 229
           ++ATG             + G             I+S     L++A K+ + VGGGYI +
Sbjct: 156 LLATGSWPQH-LG-----IEGDDLC---------ITSNEAFYLDEAPKRALCVGGGYISI 200

Query: 230 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
           E A    A         + +  + +L R F   L ++  +  + NG+      +   +  
Sbjct: 201 EFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTHENPAKVTK 259

Query: 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 342
            +DG    V  E G+  D D +++ IG  P       E+ G  +  + G I+VD   +T 
Sbjct: 260 NADGTRH-VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN-GAIKVDAYSKTN 317

Query: 343 MPGIFAIGDV 352
           +  I+AIGDV
Sbjct: 318 VDNIYAIGDV 327

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  105 bits (264), Expect = 2e-24
 Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 26/187 (13%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 229
           +VATG  A   PE I    PG               S     LE+  KKVVVVG GYIG+
Sbjct: 153 LVATGGKAIF-PENI----PGFELG---------TDSDGFFRLEEQPKKVVVVGAGYIGI 198

Query: 230 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 289
           E+A    G   +T ++     +L R F   +       Y + G+   K + I  +E   +
Sbjct: 199 ELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVE 257

Query: 290 GRVAAVKLEDGSTI-DADTIVIGIGAKPTVS-PFERVG--LNSSVGGIQVDGQFRTRMPG 345
                + + D  +I D D ++  IG K  +    E VG  LNS    I  D    T +P 
Sbjct: 258 TDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH-DQIIADEYQNTNVPN 316

Query: 346 IFAIGDV 352
           I+++GDV
Sbjct: 317 IYSLGDV 323

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  102 bits (258), Expect = 9e-24
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 229
           ++ATG      P      LPG             I+S     L++  K+V ++G GYIG+
Sbjct: 135 VIATGGRPIV-PR-----LPGAELG---------ITSDGFFALQQQPKRVAIIGAGYIGI 179

Query: 230 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 289
           E+A     +  + T++  E+ LL   F P L+    +     G++     ++  LE  + 
Sbjct: 180 ELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQ 238

Query: 290 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPG 345
           G    V  +       D+++  +G  P       E  G  + S+ G +  D    T +PG
Sbjct: 239 GTTL-VAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSN-GMVPTDAYQNTNVPG 296

Query: 346 IFAIGDV 352
           ++A+GD+
Sbjct: 297 VYALGDI 303

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score =  101 bits (253), Expect = 2e-23
 Identities = 62/379 (16%), Positives = 113/379 (29%), Gaps = 82/379 (21%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
           +++GG   A  AA T      +   + +++K  ++ Y RPAL                  
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRPALP-------------HVAI 50

Query: 124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT----NSGKLLKYGSLIVAT 179
                   +    E   EKGI+   +  V  ID +   +       S    +Y  +IV  
Sbjct: 51  GVRDVDELKVDLSEALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGI 109

Query: 180 GCTASRFPEKIGGYLPGVHYIRDVADADAL---ISSLEKAKKVV--------------VV 222
           G       E + G+    + + +   A  L   + S +     +              V 
Sbjct: 110 GAHL--ATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVP 167

Query: 223 GGGYIGMEVAAAAVGWKL---------------DTTIIF--PENHLLQRLFTPSLAQRYE 265
                  + A     +++                  +    P  +L     +P+  +   
Sbjct: 168 ENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVA 225

Query: 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI--GIGAKPTV--SPF 321
            +Y Q G+K V    IK +          +  E G+TI AD  ++       P +  S  
Sbjct: 226 SIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGNPALKNSTP 279

Query: 322 ERVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC- 379
               L    G I  D      +   ++A+GD  +       +         A  + +   
Sbjct: 280 ---DLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT---VPKLGY-----LAVMTGRIAA 328

Query: 380 --IKALLSAQTHTYDYLPY 396
             +   L   T    Y P 
Sbjct: 329 QHLANRLGVPTKVDKYYPT 347

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 28/120 (23%)

Query: 217 KKVVVVGGGYIGMEVAAAA---VGWKLDTTIIFPENHLLQRLFTPSL------------- 260
            KV+V+GG +  +  A      VG K D  +I          F P+L             
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS---YFRPALPHVAIGVRDVDEL 58

Query: 261 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKP 316
                +   + G++F +G  ++ ++A     +  V         +  + D +++GIGA  
Sbjct: 59  KVDLSEALPEKGIQFQEGT-VEKIDA--KSSM--VYYTKPDGSMAEEEYDYVIVGIGAHL 113

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 99.2 bits (248), Expect = 2e-22
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 229
           ++ATG       +     + G          +  I+S     L+++  K +VVG  Y+ +
Sbjct: 152 VIATGGRPRYPTQ-----VKG--------ALEYGITSDDIFWLKESPGKTLVVGASYVAL 198

Query: 230 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 289
           E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++    
Sbjct: 199 ECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 256

Query: 290 GRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFR 340
            ++  V  ED +     T   DT++  IG  P       E+ G   N     I VD Q  
Sbjct: 257 NQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEA 315

Query: 341 TRMPGIFAIGDV 352
           T +P I+AIGDV
Sbjct: 316 TSVPHIYAIGDV 327

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 99.2 bits (248), Expect = 2e-22
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 32/191 (16%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 229
           ++A G    R+P+  G    G             I+S     L++   K +VVG GYIG+
Sbjct: 155 VIAVGGRP-RYPDIPGAVEYG-------------ITSDDLFSLDREPGKTLVVGAGYIGL 200

Query: 230 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 287
           E A     +G   + T++   + +L R F   +A+      ++ G+ F++     ++E  
Sbjct: 201 ECAGFLKGLG--YEPTVMV-RSIVL-RGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQ 256

Query: 288 SDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRT 341
            DG++      V+  + S    DT++  IG K  V        G+      I VD Q  T
Sbjct: 257 DDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEAT 316

Query: 342 RMPGIFAIGDV 352
            +  I+A+GD+
Sbjct: 317 NVANIYAVGDI 327

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 98.0 bits (245), Expect = 4e-22
 Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 35/209 (16%)

Query: 163 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 216
           I  SGK      +++ATG   S  P +    +PG             I+S     LE+  
Sbjct: 140 IEVSGKKYTAPHILIATGGMPST-PHESQ--IPGASLG---------ITSDGFFQLEELP 187

Query: 217 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 274
            + V+VG GYI +E+A   +A+G    T+++   + +L R F   ++    +  +  GV+
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVE 244

Query: 275 FVKGASIKNLEAGSDGRVAAV-------KLEDGSTIDADTIVIGIGAKPTVSPF--ERVG 325
            +K + +K ++    G   ++               D D ++  IG  P        ++G
Sbjct: 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLG 304

Query: 326 --LNSSVGGIQVDGQFRTRMPGIFAIGDV 352
              +   G I VD    T + GI+A+GDV
Sbjct: 305 IQTDDK-GHIIVDEFQNTNVKGIYAVGDV 332

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 97.0 bits (242), Expect = 1e-21
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 166 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK--AKKVVVVG 223
           +GK+ K  +LI+A G             +PGV+       A  +   L+      VVVVG
Sbjct: 169 AGKVFKAKNLILAVGAGPGTLD------VPGVNAKGVFDHATLVEE-LDYEPGSTVVVVG 221

Query: 224 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
           G    +E      A G +  T ++     L   +             ++ G++ + G+++
Sbjct: 222 GSKTAVEYGCFFNATGRR--TVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEIISGSNV 278

Query: 282 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF-ERVGLN-SSVGGIQVD 336
             +E  ++GRV AV          I+ D + +G+G +P  +   + +GL+    G + V+
Sbjct: 279 TRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVN 338

Query: 337 GQFRTRMPGIFAIGDVAAFP 356
              +T +P ++A+GD+   P
Sbjct: 339 EYLQTSVPNVYAVGDLIGGP 358

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 96.5 bits (241), Expect = 1e-21
 Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 45/220 (20%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
            T+ D        +         ++VATG +           LP         D + +++
Sbjct: 133 ATAADGSTSEHEADV--------VLVATGASPRI--------LPSAQP-----DGERILT 171

Query: 212 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPS---- 259
                 L+     ++VVG G  G E       +G  +  T++  ++H+L     P     
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVL-----PYEDAD 224

Query: 260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 319
            A   E+ + + GV+  K A   ++     G    V + DG T++    ++ IG+ P  S
Sbjct: 225 AALVLEESFAERGVRLFKNARAASVTRTGAG--VLVTMTDGRTVEGSHALMTIGSVPNTS 282

Query: 320 PF--ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 356
               ERVG+    G  + VD   RT   GI+A GD     
Sbjct: 283 GLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 93.8 bits (234), Expect = 2e-21
 Identities = 50/317 (15%), Positives = 90/317 (28%), Gaps = 69/317 (21%)

Query: 64  VIVGGG----NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 119
            ++G G    NA+    R       A  ++ +          R  +T+            
Sbjct: 10  AVIGAGPAGLNASLVLGR-------ARKQIALFDNNTN----RNRVTQNS---------- 48

Query: 120 LPGFHTCVG-SGGE-----RQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLL 170
             GF T  G    E           Y        Y+  V  I  +      ++T      
Sbjct: 49  -HGFITRDGIKPEEFKEIGLNEVMKY---PSVHYYEKTVVMITKQSTGLFEIVTKDHTKY 104

Query: 171 KYGSLIVATGCTASRFPEKIGGYLPGV--HYIRDVA-----DADALISSLEKAKKVVVVG 223
               +++ATG     FP      +P V  +Y + +      D         K + ++++ 
Sbjct: 105 LAERVLLATGMQE-EFPS-----IPNVREYYGKSLFSCPYCDGW-----ELKDQPLIIIS 153

Query: 224 GGYIG-MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 282
                 + +      W  D  I               L+Q          +  +  + I+
Sbjct: 154 ENEDHTLHMTKLVYNWSTDLVIATN---------GNELSQTIMDELSNKNIPVITES-IR 203

Query: 283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRT 341
            L+ G  G +  V+   G  I+     I           E++G    S G   +D   RT
Sbjct: 204 TLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRT 262

Query: 342 RMPGIFAIGDVAAFPLK 358
               I+  G+       
Sbjct: 263 SEKNIYLAGETTTQGPS 279

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 94.8 bits (236), Expect = 4e-21
 Identities = 56/329 (17%), Positives = 95/329 (28%), Gaps = 62/329 (18%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
           VI+G G     AA    E   +   + ++S   Y     P+                   
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF-QFVPSNPW---------------- 50

Query: 124 HTCVGSGG------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 177
              VG G             + + KGI  I       ID E Q +    G  + Y  L++
Sbjct: 51  ---VGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQIDAEAQNITLADGNTVHYDYLMI 106

Query: 178 ATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKK----VVVVGGGYIGME 230
           ATG   +   E + G   +   V  I  V  A+   +  +   +    +V+         
Sbjct: 107 ATGPKLA--FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCF 164

Query: 231 VAAAAVGWKLDT--------------TIIFPENHLLQRL--FTPSLAQRYEQLYQQNGVK 274
             A      + +              T I  E ++                +  ++ G++
Sbjct: 165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224

Query: 275 FVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERVGLNSS 329
                 +  +E   +        E G       +     ++    K  V     V    +
Sbjct: 225 AYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG-VPAVAGVEGLCN 281

Query: 330 VGG-IQVDGQFR-TRMPGIFAIGDVAAFP 356
            GG + VD   R  +   IFA G   A P
Sbjct: 282 PGGFVLVDEHQRSKKYANIFAAGIAIAIP 310

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 24/120 (20%)

Query: 213 LEKAKKVVVVGGGYIGMEVAAA---AVGWKLDTTIIFPENHLLQRLFTPSL--------- 260
           +  +  VV++G G  GM  A     A+G   + T+I   ++     F PS          
Sbjct: 1   MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF---QFVPSNPWVGVGWKE 57

Query: 261 ----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316
               A       ++ G+ F+   S + ++A  + +   + L DG+T+  D ++I  G K 
Sbjct: 58  RDDIAFPIRHYVERKGIHFIA-QSAEQIDA--EAQ--NITLADGNTVHYDYLMIATGPKL 112

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 94.2 bits (235), Expect = 8e-21
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 39/197 (19%)

Query: 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 229
           ++ATG             +PG        D +  ISS     L     K +VVG  Y+ +
Sbjct: 178 LIATGERPRY-LG-----IPG--------DKEYCISSDDLFSLPYCPGKTLVVGASYVAL 223

Query: 230 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNL 284
           E A   A +G  LD T++   + LL R F   +A +  +  +++G+KF++      ++ +
Sbjct: 224 ECAGFLAGIG--LDVTVMV-RSILL-RGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 279

Query: 285 EAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQV 335
           EAG+ GR+  V  +  ++      + +T+++ IG          E VG  +N   G I V
Sbjct: 280 EAGTPGRLR-VVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPV 338

Query: 336 DGQFRTRMPGIFAIGDV 352
             + +T +P I+AIGD+
Sbjct: 339 TDEEQTNVPYIYAIGDI 355

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 38/235 (16%)

Query: 143 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---- 196
                  +   +++ E     + T+ G      ++I+A G  A   P +IG   PG    
Sbjct: 79  NPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE-PRRIG--APGEREF 135

Query: 197 ----VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 252
               V+Y   V           + K+V++VGGG        +AV W L+         L+
Sbjct: 136 EGRGVYYA--VKSKAEF-----QGKRVLIVGGG-------DSAVDWALNLLDTARRITLI 181

Query: 253 QR--LF--TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----I 303
            R   F    +  +   + +++  ++ +    ++ +E   D RV    +    T     +
Sbjct: 182 HRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELAL 239

Query: 304 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
           + D ++I  G    + P    GL      I+VD    T +PG++A GD+  +P K
Sbjct: 240 EVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK 294

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 92.6 bits (231), Expect = 3e-20
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 26/212 (12%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
           V + + ++    T          +I+A+G   ++        LPGV Y     D     +
Sbjct: 121 VKTDEGKEIEAETRY--------MIIASGAETAKLR------LPGVEYCLTSDDIFGYKT 166

Query: 212 SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 268
           S  K  + +V++G GYIG+E+A+    +G +    II   +  L  L    +      L 
Sbjct: 167 SFRKLPQDMVIIGAGYIGLEIASIFRLMGVQT--HIIEMLDRALITLEDQDIVN---TLL 221

Query: 269 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKP-TVSPFERV 324
               +     + +  ++   D     +         +I  +++V+  G +P        +
Sbjct: 222 SILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREI 281

Query: 325 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
           GL+ S  GI VD   +T +P +FA GD     
Sbjct: 282 GLSISKTGIVVDETMKTNIPNVFATGDANGLA 313

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 34/223 (15%)

Query: 155 IDIEKQ-----TLITNSGKLLKYGSLIVATGCTA--SRFPEKIGGY----LPGVHYIRDV 203
               K         TN+G + +  ++++A G  A   R   ++G         V+Y   V
Sbjct: 98  TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155

Query: 204 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFT--PS 259
              +       K K+VV+VGGG        +A+ W +          L+ R   F     
Sbjct: 156 KSVEDF-----KGKRVVIVGGG-------DSALDWTVGLIKNAASVTLVHRGHEFQGHGK 203

Query: 260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAK 315
            A   E+      +       + ++E  S+G +  V L        T++AD ++I IG K
Sbjct: 204 TAHEVERARANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262

Query: 316 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
             + P  R  L      + VD   +T + G++A GD+A +P K
Sbjct: 263 SNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK 305

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 88.9 bits (221), Expect = 6e-19
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)

Query: 212 SLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 270
           SL     K +V+G  Y+ +E A        D T++   + LL R F   +A++     + 
Sbjct: 281 SLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMV-RSILL-RGFDQQMAEKVGDYMEN 338

Query: 271 NGVKFVKGASIKN--------LEAGSDGR-VAAVKLEDGST--IDADTIVIGIGAKPTVS 319
           +GVKF K               E    G  +      DG     + +T++  +G +P +S
Sbjct: 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS 398

Query: 320 PF--ERVG--LNSSVGGIQVDGQFRTRMPGIFAIGDV 352
               E VG  L+ + G +      +T +  ++AIGD+
Sbjct: 399 KVLCETVGVKLDKN-GRVVCTDDEQTTVSNVYAIGDI 434

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 87.9 bits (219), Expect = 7e-19
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 29/214 (13%)

Query: 154 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS- 212
               E++ L+  +G+ L+   +++ATG              P         D + +++S 
Sbjct: 112 RFLSERKVLVEETGEELEARYILIATGSAPLI--------PPWAQV-----DYERVVTST 158

Query: 213 ----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265
                 +  K+++VVGGG IG+E+      +G +    ++   + +L       +++  E
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAE--VIVLEYMDRILP-TMDLEVSRAAE 215

Query: 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FER 323
           +++++ G+    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E 
Sbjct: 216 RVFKKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLEN 273

Query: 324 VGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 356
            GL++   G I VD   RTR+P I+AIGDV   P
Sbjct: 274 AGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 87.2 bits (217), Expect = 1e-18
 Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 23/198 (11%)

Query: 166 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKA-KKVVVVG 223
            G+ ++   L++ATG ++          LP +     V  + +AL  + +   + +VVVG
Sbjct: 129 DGQRIQCEHLLLATGSSSVE--------LPMLPLGGPVISSTEAL--APKALPQHLVVVG 178

Query: 224 GGYIGMEVAAAAVGW-KL--DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 280
           GGYIG+E+  A   + KL    +++     +L   +   L     +  ++ G+    G S
Sbjct: 179 GGYIGLELGIA---YRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHS 234

Query: 281 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQ 338
           ++  E G    +A         ++AD +++ +G +P    F  E + L  +   I +D +
Sbjct: 235 VEGYENG--CLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDER 292

Query: 339 FRTRMPGIFAIGDVAAFP 356
            +T M  ++AIGDVA  P
Sbjct: 293 CQTSMHNVWAIGDVAGEP 310

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 84.9 bits (211), Expect = 8e-18
 Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
           V   D   +++  ++         I+ATG +           +PG     +V   +  I 
Sbjct: 123 VDLNDGGTESVTFDN--------AIIATGSSTRL--------VPGTSLSANVVTYEEQIL 166

Query: 212 SLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYE 265
           S E  K +++ G G IGME        G  +D TI+  E   L R   P+    +++  E
Sbjct: 167 SRELPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIV--E--FLPR-ALPNEDADVSKEIE 219

Query: 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--E 322
           + +++ GV  +    ++++  G       V  +  +  + A+ ++  IG  P V  +  +
Sbjct: 220 KQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLD 279

Query: 323 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
           + G+  +    I VD   RT +  I+AIGDV    
Sbjct: 280 KAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 84.1 bits (209), Expect = 2e-17
 Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKV 219
            L     +++ +   +VATG + +  P      +PG+         +AL  + +   +++
Sbjct: 128 RLNEGGERVVMFDRCLVATGASPAVPP------IPGLKESPYWTSTEAL--ASDTIPERL 179

Query: 220 VVVGGGYIGMEVAA--AAVGWKLDTTIIFPE-NHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
            V+G   + +E+A   A +G K+  T++    N L  R   P++ +     ++  G++ +
Sbjct: 180 AVIGSSVVALELAQAFARLGSKV--TVL--ARNTLFFR-EDPAIGEAVTAAFRAEGIEVL 234

Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGI 333
           +      +       V  +    G  + AD +++  G  P       +  G+  ++ G I
Sbjct: 235 EHTQASQVAHMDGEFV--LTTTHG-ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAI 291

Query: 334 QVDGQFRTRMPGIFAIGDVAAFP 356
            +D   RT  P I+A GD    P
Sbjct: 292 VIDQGMRTSNPNIYAAGDCTDQP 314

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 83.3 bits (207), Expect = 2e-17
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 33/206 (16%)

Query: 165 NSGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA-KK 218
           +S +   + + I+ATG      P      +I            +    AL  +L +  K 
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELPNFKFSNRI------------LDSTGAL--NLGEVPKS 172

Query: 219 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           +VV+GGGYIG+E+    A  G K+  TI+     +L   F   +A   ++  ++ GV+ V
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKV--TILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVV 229

Query: 277 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLN-SSV 330
             A  K  E   DG    V  E      TIDAD +++ +G +P       E++G+  ++ 
Sbjct: 230 TNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNR 287

Query: 331 GGIQVDGQFRTRMPGIFAIGDVAAFP 356
           G I+VD Q RT +P IFAIGD+   P
Sbjct: 288 GLIEVDQQCRTSVPNIFAIGDIVPGP 313

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 83.0 bits (206), Expect = 3e-17
 Identities = 44/220 (20%), Positives = 93/220 (42%), Gaps = 32/220 (14%)

Query: 152 VTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVA 204
           V+    +       +G+  ++ + + I+A G   ++ P      +I            + 
Sbjct: 127 VSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPRI------------ID 174

Query: 205 DADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 261
            + AL  +L++   K++++GGG IG+E+    + +G +L   ++   + L+Q      L 
Sbjct: 175 SSGAL--ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRL--DVVEMMDGLMQ-GADRDLV 229

Query: 262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 319
           + +++  +      +       +E   DG     +  +        D +++  G  P   
Sbjct: 230 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289

Query: 320 P--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
               E+ G+  +  G I+VD Q RT +P I+AIGD+   P
Sbjct: 290 LISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 82.9 bits (206), Expect = 3e-17
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 32/206 (15%)

Query: 166 SGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA--KK 218
            G+     SLI+ATG            E +                 AL   +E+   K+
Sbjct: 126 GGERYGAKSLILATGSEPLELKGFPFGEDV------------WDSTRAL--KVEEGLPKR 171

Query: 219 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           ++V+GGG +G+E+      +G ++  T+I     +L     P  A    +  ++ G++  
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEV--TLIEYMPEILP-QGDPETAALLRRALEKEGIRVR 228

Query: 277 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVG 331
                   E   DG    ++  +G     +  D +++ +G KP       E+ G+     
Sbjct: 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDER 288

Query: 332 G-IQVDGQFRTRMPGIFAIGDVAAFP 356
           G I+V+ +  T +PG++AIGD A  P
Sbjct: 289 GFIRVNARMETSVPGVYAIGDAARPP 314

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 81.8 bits (203), Expect = 8e-17
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 40/221 (18%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
            T  D   Q + T +        +++ATG   +          PG+       D D ++S
Sbjct: 129 ATKADGGTQVIDTKN--------ILIATGSEVTP--------FPGITI-----DEDTIVS 167

Query: 212 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 263
           S     L+K  +K+VV+G G IG+E+ +    +G  +  T +    H+        +++ 
Sbjct: 168 STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADV--TAVEFLGHVGGVGIDMEISKN 225

Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTV 318
           ++++ Q+ G KF     +      SDG++  V +E  S      I  D +++ IG +P  
Sbjct: 226 FQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFT 284

Query: 319 SP--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
                E +G+     G I V+ +F+T++P I+AIGDV A P
Sbjct: 285 KNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 80.3 bits (199), Expect = 9e-17
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 36/220 (16%)

Query: 156 DIEKQT----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG--------VHYIRDV 203
            +EKQ      +  + +     ++I+  G  A + P K+   L          +HY   V
Sbjct: 92  SVEKQADGVFKLVTNEETHYSKTVIITAGNGAFK-PRKLE--LENAEQYEGKNLHYF--V 146

Query: 204 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 263
            D           ++V ++GGG        +AV W L    I  E  ++ R       + 
Sbjct: 147 DDLQKF-----AGRRVAILGGG-------DSAVDWALMLEPIAKEVSIIHRRDKFRAHEH 194

Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTV 318
             +    + V  +       L    + ++  + LE+        ++ D +++  G   ++
Sbjct: 195 SVENLHASKVNVLTPFVPAELIG--EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSL 252

Query: 319 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
            P +  GL+     I V     T + G FA GD+  +  K
Sbjct: 253 GPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK 292

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 34/218 (15%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD----VADAD 207
           VT+   E+Q L   +        +++ATG   +         +PGV    D    V+   
Sbjct: 147 VTNEKGEEQVLEAKN--------VVIATGSDVAG--------IPGVEVAFDEKTIVSSTG 190

Query: 208 ALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 264
           AL  +LEK    ++VVGGG IG+E+ +  A +G K+  T++   + +L       +A++ 
Sbjct: 191 AL--ALEKVPASMIVVGGGVIGLELGSVWARLGAKV--TVVEFLDTILG-GMDGEVAKQL 245

Query: 265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKPTVSP- 320
           +++  + G+ F  GA +       DG     +   G    T+DA+ ++I  G KP+    
Sbjct: 246 QRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGL 305

Query: 321 -FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 356
              + G+     G +++D  F+T + G++AIGDV   P
Sbjct: 306 GLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 79.9 bits (198), Expect = 3e-16
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 38/219 (17%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
           V +I+ E   +            +I+ATG             LPGV       D   ++S
Sbjct: 128 VDTIEGENTVVKGKH--------IIIATGSDVKS--------LPGVTI-----DEKKIVS 166

Query: 212 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 263
           S     L +  KK+VV+G GYIG+E+ +    +G +   T++   + ++       + ++
Sbjct: 167 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE--VTVVEFASEIVP-TMDAEIRKQ 223

Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP 320
           +++  ++ G+KF     +  ++   DG    V+   G   + I+AD +++  G  P  S 
Sbjct: 224 FQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSG 283

Query: 321 --FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 356
              +++G+ +   G I V+ +F T + G++AIGDV   P
Sbjct: 284 LNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 79.9 bits (198), Expect = 4e-16
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 36/218 (16%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP------EKIGGYLPGVHYIRDVAD 205
           VT +D  + T       +L   ++IVATG   + FP      EKI            V+ 
Sbjct: 128 VTPVDGLEGT--VKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI------------VSS 173

Query: 206 ADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQ 262
             AL  SL++  K++ ++GGG IG+E+ +  + +G K+  T++  +  +        +A+
Sbjct: 174 TGAL--SLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKV--TVVEFQPQIGA-SMDGEVAK 228

Query: 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPT 317
             ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +++ +G +P 
Sbjct: 229 ATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288

Query: 318 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 352
           ++    E++GL     G + +D QF ++ P I  +GDV
Sbjct: 289 IAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 78.7 bits (195), Expect = 8e-16
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 36/217 (16%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
           VT+ D   Q L T +        +I+A+G             +P         D D ++ 
Sbjct: 131 VTAADGSSQVLDTEN--------VILASGSKPVE--------IPPAPV-----DQDVIVD 169

Query: 212 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 263
           S      +    K+ V+G G IG+E+ +  A +G ++  T++   +  L       +A+ 
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEV--TVLEAMDKFLP-AVDEQVAKE 226

Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSP-- 320
            +++  + G+K + GA +   E  +    V  V  E   +   D +++ +G +P  +   
Sbjct: 227 AQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLL 286

Query: 321 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 356
               G+     G I VD    T +PG++AIGDV    
Sbjct: 287 AADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 48/229 (20%), Positives = 69/229 (30%), Gaps = 50/229 (21%)

Query: 143 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----G 196
            I  +    VT          +  + G+    G LI+A G T    PE I G        
Sbjct: 71  TIHWVEGR-VTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD-ELPE-IAGLRERWGSA 127

Query: 197 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248
           V +        +                 K+ V+    + +  A     W   T      
Sbjct: 128 VFHCPYCHGYELDQ--------------GKIGVIAASPMAIHHALMLPDWGETTFFT--- 170

Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308
                 +  P   Q    L    GV  V+   I+ +  G       V L DG +I    +
Sbjct: 171 ----NGIVEPDADQH-ALL-AARGV-RVETTRIREIA-GHAD----VVLADGRSIALAGL 218

Query: 309 VIGIGAKPTVSPFERVGL----NSSVGGIQVDGQFRTRMPGIFAIGDVA 353
                 + TV   E++G           I  D   +T   GIFA GDVA
Sbjct: 219 FTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA 267

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 77.5 bits (192), Expect = 2e-15
 Identities = 44/215 (20%), Positives = 91/215 (42%), Gaps = 38/215 (17%)

Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
           V  +D +++ L T           I+ATG   +         LP + +     D   ++S
Sbjct: 125 VNGLDGKQEMLETKK--------TIIATGSEPTE--------LPFLPF-----DEKVVLS 163

Query: 212 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 263
           S     L +  K +VV+GGG IG+E+ +  A +G ++  T++              +   
Sbjct: 164 STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEV--TVVEFAPRCAP-TLDEDVTNA 220

Query: 264 YE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP 320
               L +   +KF+    +       D     V+ ++G   T+  + +++ +G +P    
Sbjct: 221 LVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGG 280

Query: 321 F--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 352
              +++ +  +  G +++   F T +P ++AIGDV
Sbjct: 281 LGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 37/234 (15%)

Query: 143 GIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 195
            +++I     + +           + T SG +LK  S+I+ATG         +   +P  
Sbjct: 281 DVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK----WRNMN--VPGE 334

Query: 196 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249
                 GV Y       D     L K K+V V+GGG  G+E A    G     T++    
Sbjct: 335 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL---- 384

Query: 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----ID 304
                +    + Q  +++     V  +  A    ++ G   +V  ++  D  +     + 
Sbjct: 385 EFAPEMKADQVLQ--DKVRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHSVA 441

Query: 305 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
              I + IG  P     E     + +G I +D +  T + G+FA GD    P K
Sbjct: 442 LAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 75.7 bits (187), Expect = 7e-15
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 39/218 (17%)

Query: 157 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS---- 212
           +++ TL  +    +    +++ATG   +        Y   +           L+++    
Sbjct: 122 LDEHTLQVDDHSQVIAKRIVIATGSRPN--------YPEFLAA-----AGSRLLTNDNLF 168

Query: 213 -LEKA-KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQL 267
            L    K V V G G IG+E+  A        +   +      +   L    + +  E+ 
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQA---LSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKT 224

Query: 268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVG 325
           + +    F   A + +     D        + G   T     ++   G K  V   +++G
Sbjct: 225 FNEEF-YFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DKLG 280

Query: 326 L-NSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFP 356
           L N+S+          D    +T +  IF  GD     
Sbjct: 281 LENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 55/241 (22%), Positives = 86/241 (35%), Gaps = 56/241 (23%)

Query: 143 GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP------ 195
                  + V SI   +    I  +        +I+ TG T     + +G  +       
Sbjct: 86  AKIREGVE-VRSIKKTQGGFDIETNDDTYHAKYVIITTGTT----HKHLG--VKGESEYF 138

Query: 196 --GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFP 247
             G  Y    +  D     L K K+VV +GGG  G   A         V      TII  
Sbjct: 139 GKGTSY---CSTCDG---YLFKGKRVVTIGGGNSGAIAAISMSEYVKNV------TII-- 184

Query: 248 ENHLLQRLFTPSLAQRYEQLYQQ----NGVKFVKGASIKNLEAGSDGRVAAVKLEDGST- 302
               + +          E  Y Q      + ++  A +  +  G   +V  VK +D +T 
Sbjct: 185 --EYMPKY-------MCENAYVQEIKKRNIPYIMNAQVTEIV-GDGKKVTGVKYKDRTTG 234

Query: 303 ----IDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 357
               I+ D + I +G  P  S  +  G+     G I VD + RT +PG++A GDV +   
Sbjct: 235 EEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF 294

Query: 358 K 358
            
Sbjct: 295 A 295

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 43/237 (18%)

Query: 143 GIEMIYQDP---VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 195
            +++I       +    +E     + T SG +LK  S+IVATG         +   +P  
Sbjct: 70  DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK----WRNMN--VPGE 123

Query: 196 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249
                 GV Y       D     L K K+V V+GGG  G+E A       +D   I    
Sbjct: 124 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAA-------IDLAGIVEHV 170

Query: 250 HLLQRLFTPSL-AQRY--EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST---- 302
            LL+    P + A +   ++L     V  +  A    ++ G   +V  ++  D  +    
Sbjct: 171 TLLEFA--PEMKADQVLQDKLRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIH 227

Query: 303 -IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
            I+   I + IG  P  +  E     + +G I +D +  T + G+FA GD    P K
Sbjct: 228 NIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 61/323 (18%), Positives = 100/323 (30%), Gaps = 65/323 (20%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
           V+VGGG     AA+           + ++                              +
Sbjct: 6   VVVGGGTGGATAAKYIKLAD-PSIEVTLIEPNTD-------------------------Y 39

Query: 124 HTCVGS----GGERQTPEWYKE------KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 173
           +TC  S    GG+R+              GI+++  D  T ID +K+ + T  G    Y 
Sbjct: 40  YTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYD 98

Query: 174 SLIVATGCTASRFPEKIGGYLP-----GVHYIRDVADADAL---ISSLEKAKKVVVV--- 222
             +VA G       +KI GY         H  +       L   +  +     VV+    
Sbjct: 99  RCVVAPGIELI--YDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPA 156

Query: 223 ------GGGYIGMEVAAAAV---GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNG 272
                  G Y      A  +          I+        Q  F+    + Y    +   
Sbjct: 157 APFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAM 216

Query: 273 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 332
           +++  G     ++   DG    V+   G    AD I + I  +      +  GL +  G 
Sbjct: 217 IEWHPGPDSAVVKV--DGGEMMVETAFGDEFKADVINL-IPPQRAGKIAQIAGLTNDAGW 273

Query: 333 IQVDGQ-FR-TRMPGIFAIGDVA 353
             VD + F  +   GI  IGD +
Sbjct: 274 CPVDIKTFESSIHKGIHVIGDAS 296

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 216 AKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFP-ENHLLQ--------RLFTPSLAQRY 264
            +KVVVVGGG  G   A         ++ T+I P  ++                   +  
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316
               + +G++ V   S   ++   D ++  VK   G+    D  V+  G + 
Sbjct: 62  YDGLRAHGIQVVH-DSATGIDP--DKKL--VKTAGGAEFGYDRCVVAPGIEL 108

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 57/323 (17%), Positives = 112/323 (34%), Gaps = 60/323 (18%)

Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF------PEKI 190
           E  K+ G+++I    ++  +I   TL         Y +  +  G    +         + 
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEEG-----YKAAFIGIGLPEPKTDDIFQGLTQD 300

Query: 191 GGYLPGVHYIRDVADADALISSLEKA------KKVVVVGGGYIGMEVAAAAV--GWKLDT 242
            G+     ++  VA +         +        V+V+G G    + A +A+  G +   
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGAR-RV 359

Query: 243 TIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--- 298
            ++F      ++ F    A   E +L ++   +F+   S + +     GR+ AV+     
Sbjct: 360 FLVF------RKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI-VKGGRIVAVQFVRTE 412

Query: 299 ----------DGS--TIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQ-FRTR 342
                     +     + AD ++   G+             +  +     +VD +  +T 
Sbjct: 413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTS 472

Query: 343 MPGIFAIGDVAAFPLKMYDRTAR--VEHVDHARQSAQ--HC-IKALLSAQTHTYDYLPYF 397
            P +FA GD+           A   VE V+  +Q++   H  I+A   A       LP F
Sbjct: 473 EPWVFAGGDIV--------GMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLF 524

Query: 398 YSRVFEYEGSPRKVWWQFFGDNV 420
           Y+ V   + S      +F     
Sbjct: 525 YTPVDLVDISVEMAGLKFINPFG 547

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 51/233 (21%)

Query: 143 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 196
            + ++  D V  I+       + T      K  S+I+  G    +   P  ++  G   G
Sbjct: 84  EVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGR--G 140

Query: 197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH 250
           + Y    + ADA    L K + V V+GGG   +E A      +  V       +I   + 
Sbjct: 141 ISY---CSVADA---PLFKNRVVAVIGGGDSALEGAEILSSYSTKV------YLIHRRDT 188

Query: 251 LLQRLFTPSLAQRYEQLYQQ-----NGVKFVKGASIKNLEAGSDGRVAAVKLED-----G 300
                       + + +Y +       V+FV  + +K  E   D  V  V +E+      
Sbjct: 189 F-----------KAQPIYVETVKKKPNVEFVLNSVVK--EIKGDKVVKQVVVENLKTGEI 235

Query: 301 STIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 352
             ++ + + I IG  P     +  G+ +   G I+VD   RT +PG+FA GD 
Sbjct: 236 KELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDC 288

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 34/233 (14%)

Query: 133 RQTPEWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT--ASR 185
            +  E+      +   +E+  + P+T  DI +            +  +I ATG T     
Sbjct: 443 GRVKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDG 492

Query: 186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEVAAAAVGWKLDTT 243
                   LP    ++ +   D     L   KKVVV      Y+G  VA        + +
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVS 552

Query: 244 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--S 301
           I+ P   +           R ++   +NGV  V   +   + A   G V           
Sbjct: 553 IVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHA---VVAVGAGGVTVRDTYASIER 609

Query: 302 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
            ++ D +V+     P    +  +      G I            +  IGD  A
Sbjct: 610 ELECDAVVMVTARLPREELYLDLVARRDAGEI----------ASVRGIGDAWA 652

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 82/252 (32%)

Query: 143 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 196
           G++      V  +  +     ++   GK  +  S+I+ATG +  R       +  G   G
Sbjct: 73  GLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGK--G 129

Query: 197 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDT 242
           V           ++              K+V V+GGG   +E A         V      
Sbjct: 130 VSTCATCDGFFYKN--------------KEVAVLGGGDTAVEEAIYLANICKKV------ 169

Query: 243 TIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGR 291
            +I    H           L+                 N  ++F+    ++ ++ G    
Sbjct: 170 YLI----HRRDGFRCAPITLEHAK-------------NNDKIEFLTPYVVEEIK-GDASG 211

Query: 292 VAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRT 341
           V+++ +++        +      I +G     +  ++   +        G I VD   +T
Sbjct: 212 VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT 271

Query: 342 RMPGIFAIGDVA 353
            + G+FA GD+ 
Sbjct: 272 NVQGLFAAGDIR 283

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 152 VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI--RDVADA 206
           V  +    +   ++   G+     ++I ATG       PE  G        +     +  
Sbjct: 99  VQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP 158

Query: 207 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-PENHLLQRLFTPSLAQRYE 265
                      +V ++GGG  G ++ A        T I       L   +    L +R  
Sbjct: 159 APF-----AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERAT 213

Query: 266 QLYQQN--------GVKFVKGASIKN--LEAGSDGRVAA-----------VKLEDGSTID 304
           + ++                   +    L+A + G +AA           ++  DG+   
Sbjct: 214 ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERA 273

Query: 305 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD--GQFRTRMPGIFAIG 350
            D ++   G +P +S  + + L +  G ++VD  G     +P ++ +G
Sbjct: 274 FDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 64/393 (16%), Positives = 111/393 (28%), Gaps = 113/393 (28%)

Query: 100 YERPALTKG----------------YLF-PLDKKPARLPGFHTCVGSGGERQTPEWYKEK 142
             +  L+K                  LF  L  K          V     R   ++    
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQKFVE-EVLRINYKFLMSP 97

Query: 143 GIEMIYQDP--VTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHY 199
            I+   + P  +T + IE++  + N  ++  KY           SR  +           
Sbjct: 98  -IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---------NVSR-LQP-------YLK 139

Query: 200 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-------IF------ 246
           +R      AL   L  AK V++ G    G    A  V   L   +       IF      
Sbjct: 140 LRQ-----AL-LELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKN 191

Query: 247 ---PENHL--LQRL---FTPSLAQRYEQL----YQQNGVK-----FVKGASIKN----LE 285
              PE  L  LQ+L     P+   R +       + + ++      +K    +N    L 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 286 AGSDGRVA-AVKLE--------DGSTIDA-----DTIVIGIGAKPTVSPFERVGLNSSVG 331
              + +   A  L              D       T +       T++P E   L     
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 332 GIQVDG---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 388
             +      +  T  P    +  +A             +HV+  + +    I++ L+   
Sbjct: 312 DCRPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLE 367

Query: 389 HTYDYLPYFYS-RVFEYEGS--PRKV----WWQ 414
              +Y   F    VF    +  P  +    W+ 
Sbjct: 368 -PAEYRKMFDRLSVFP-PSAHIPTILLSLIWFD 398

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 82/252 (32%)

Query: 143 GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLP 195
           G++      V  I        T+    GK     ++IV TG    +  F   ++  G   
Sbjct: 76  GLKHEM-VGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGK-- 132

Query: 196 GVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLD 241
           GV           ++              K+V V+GGG   +E A       + +     
Sbjct: 133 GVSTCATCDGFFYKN--------------KEVAVLGGGDTALEEALYLANICSKI----- 173

Query: 242 TTIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDG 290
             +I    H           ++++              +N  ++ +  AS+  +  G   
Sbjct: 174 -YLI----HRRDEFRAAPSTVEKVK-------------KNEKIELITSASVDEVY-GDKM 214

Query: 291 RVAAVKL--EDGST--IDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRT 341
            VA VK+  +DGS   ++   I   +G        ++            G + VD + +T
Sbjct: 215 GVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT 274

Query: 342 RMPGIFAIGDVA 353
            + G+FA GD+ 
Sbjct: 275 SVAGLFAAGDLR 286

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 52/251 (20%), Positives = 85/251 (33%), Gaps = 83/251 (33%)

Query: 143 GIEMIYQDPVTSIDIEKQ------TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGG 192
           G ++   D V  +  +        T+   +G+  +  ++I+ATG    +   P  +   G
Sbjct: 79  GAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEY-RAKAVILATGADPRKLGIPGEDNFWG 136

Query: 193 YLPGVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGW 238
              GV           +               KKVVV+GGG   +E        A  V  
Sbjct: 137 K--GVSTCATCDGFFYKG--------------KKVVVIGGGDAAVEEGMFLTKFADEV-- 178

Query: 239 KLDTTIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAG 287
               T+I    H             R F              N  +KF+   +++  E  
Sbjct: 179 ----TVI----HRRDTLRANKVAQARAF-------------ANPKMKFIWDTAVE--EIQ 215

Query: 288 SDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTR 342
               V+ VKL +      S +  D + I IG  P  +  +        G + V  +  T 
Sbjct: 216 GADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTN 275

Query: 343 MPGIFAIGDVA 353
           +P +FA GDV+
Sbjct: 276 IPMLFAAGDVS 286

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 48/307 (15%), Positives = 93/307 (30%), Gaps = 95/307 (30%)

Query: 57  ANENREFVIVGGGNAAGYAARTFVEHGM------ADGRLCIVSKEAYAPYERPALTKGYL 110
           A + +   +VG G A    A      G       A   +                  G  
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI------------------GGQ 411

Query: 111 FPLDKKPARLPGFHTCVGSGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNS 166
           F + K+      F+         +T  +Y    +  G+ +     VT+  ++        
Sbjct: 412 FNIAKQIPGKEEFY---------ETLRYYRRMIEVTGVTLKLNHTVTADQLQA------- 455

Query: 167 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 226
                +   I+A+G      P      + G+ + + ++  D L        KV ++G G 
Sbjct: 456 -----FDETILASGIVPRTPP------IDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGG 504

Query: 227 IGMEVA---------------AAAVGWKLDTTIIFP---------------ENHLLQRLF 256
           IG + A                    W +D+++                  +  +LQR  
Sbjct: 505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA 564

Query: 257 T-------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309
           +        +    +       GVK + G S + ++   D  +  V   +   +  D +V
Sbjct: 565 SKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID---DDGLHVVINGETQVLAVDNVV 621

Query: 310 IGIGAKP 316
           I  G +P
Sbjct: 622 ICAGQEP 628

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 32/213 (15%)

Query: 171 KYGSLIVATGCTASRFPEKIGGYLPGVHY--------IRDVADADALISSLE----KAKK 218
           K+ +++VATG   +R  +  G  L  +           +                   K 
Sbjct: 207 KHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKH 266

Query: 219 VVVVGGGYIGMEVAAAAV--GWKLDTTI-IFPENHLLQRLFTPSLAQR--YEQLYQQNGV 273
           VVV+GGG   M+    A+  G      +      ++       + A+    E ++Q    
Sbjct: 267 VVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPE 326

Query: 274 KF--------VKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--F 321
            F        V+   I    A + GR     +E GS  T+ AD ++  +G +P   P  F
Sbjct: 327 GFTGDTVVTGVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAF 385

Query: 322 ERVGLNSSV-GGIQVD-GQFRTRMPGIFAIGDV 352
           +   L  +  G + VD     T M G+FA GD+
Sbjct: 386 DEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 24/164 (14%)

Query: 176 IVATGCTASRFPEKIGGY--LPGV-HYIRDVADA-DALISSLEKAKKVVVVGGG--YIGM 229
           I+ATG   +        +  +PG    + D       +    +  K+VV++     ++  
Sbjct: 484 IIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAP 543

Query: 230 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS- 288
            +A        + TI+   +      FT        +L+ +  V+ +       +E G  
Sbjct: 544 SLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLH-ELHVEELGDHFCSRIEPGRM 602

Query: 289 ----------------DGRVAAVKLEDGSTIDADTIVIGIGAKP 316
                            G            I+ D++V+  G   
Sbjct: 603 EIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 22/213 (10%)

Query: 152 VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 209
           VT+I  +    T+ T +        + VATG               G+HY  ++ D D  
Sbjct: 111 VTNISADDAYYTIATTTETY-HADYIFVATGDYNFPKKPFK----YGIHY-SEIEDFDNF 164

Query: 210 ISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 263
                   + VV+GG   G + A       + +     TT +   +       +P   QR
Sbjct: 165 -----NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQR 219

Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFE 322
              +  + G +          +   +     +  + G ++      ++  G   T +P  
Sbjct: 220 LGNVI-KQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIV 278

Query: 323 RVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAA 354
           +    ++   I++      TR P IF IG    
Sbjct: 279 QQLFVTTNQDIKLTTHDESTRYPNIFMIGATVE 311

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 47/237 (19%), Positives = 92/237 (38%), Gaps = 57/237 (24%)

Query: 143 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 196
           G ++  +D V S+ +     +++T  G+  +  ++I+A G  A     P  +++ G   G
Sbjct: 85  GADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGR--G 141

Query: 197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH 250
           V      A  D       + + + V+GGG   ME A      A +V      T++    H
Sbjct: 142 VSS---CATCDGFFF---RDQDIAVIGGGDSAMEEATFLTRFARSV------TLV----H 185

Query: 251 ----------LLQRLF-TPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 298
                     +L R      +       +   +G   V G  +++   G++         
Sbjct: 186 RRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAE--------- 236

Query: 299 DGSTIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQF-RTRMPGIFAIGDVA 353
             +T+    + + IG +P        + ++   G + V G+   T +PG+FA GD+ 
Sbjct: 237 --TTLPVTGVFVAIGHEPRSGLVREAIDVDPD-GYVLVQGRTTSTSLPGVFAAGDLV 290

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 59/242 (24%)

Query: 143 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP-EKIGGYLPGV 197
           G  +  +  VT +D   +   L T+S  +L   ++I+A G  A R  F        + G 
Sbjct: 84  GTTIFTET-VTKVDFSSKPFKLFTDSKAILAD-AVILAIGAVAKRLSFVGSG---EVLGG 138

Query: 198 HYIRDV---ADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPE 248
            + R +   A  D   + + + K + V+GGG   ME A       + V       II   
Sbjct: 139 FWNRGISACAVCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKV------YII--- 188

Query: 249 NH----------LLQRLF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 293
            H          + QR                + Y       + G  +KN+  G      
Sbjct: 189 -HRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDV---- 243

Query: 294 AVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVD-GQFRTRMPGIFAIGD 351
                  S +    +   IG +P     +  V L+S  G +    G  +T +PG+FA GD
Sbjct: 244 -------SDLKVSGLFFAIGHEPATKFLDGGVELDSD-GYVVTKPGTTQTSVPGVFAAGD 295

Query: 352 VA 353
           V 
Sbjct: 296 VQ 297

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 343
           L +   GRVAA    +   + A  +V  +G +    P   +  +   G I   G      
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG--VPTPGLPFDDQSGTIPNVGGRINGS 351

Query: 344 PGIFAIGDVA 353
           P  + +G + 
Sbjct: 352 PNEYVVGWIK 361

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 53/251 (21%), Positives = 91/251 (36%), Gaps = 78/251 (31%)

Query: 143 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 196
             E+I+ D +  +D++ +   L  ++G+     +LI+ATG +A     P  E   G   G
Sbjct: 76  ETEIIF-DHINKVDLQNRPFRLNGDNGEYTC-DALIIATGASARYLGLPSEEAFKGR--G 131

Query: 197 VHYIRDVADADALISS-------LEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTT 243
           V             S+         + +KV V+GGG   +E A      A+ V       
Sbjct: 132 V-------------SACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEV------H 172

Query: 244 IIFPENH----------LLQRLFTPSLAQRYEQLYQQNGV------KFVKGASIKNLEAG 287
           +I    H          L++RL              +           V G  +++ +  
Sbjct: 173 LI----HRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNS 228

Query: 288 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTR 342
                     ++  ++D   + + IG  P  + FE   L    G I+V         +T 
Sbjct: 229 ----------DNIESLDVAGLFVAIGHSPNTAIFEGQ-LELENGYIKVQSGIHGNATQTS 277

Query: 343 MPGIFAIGDVA 353
           +PG+FA GDV 
Sbjct: 278 IPGVFAAGDVM 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	497
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	100.0
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	100.0
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.98
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.98
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.97
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.97
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.97
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.95
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.94
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.93
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.92
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.88
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.85
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.71
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.64
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.63
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.52
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.23
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.21
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.17
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.11
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.09
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.07
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.98
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.97
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.96
3dme_A	369	Conserved exported protein; structural genomics, P	98.96
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.95
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.92
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.91
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.87
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.86
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.85
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.84
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.83
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.83
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.81
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.8
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.77
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.75
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.75
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.73
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.73
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.73
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.72
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.72
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.71
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.69
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.68
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.68
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.67
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.67
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.66
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.65
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.64
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.64
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.63
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.61
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.61
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.6
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.59
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.59
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.59
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.59
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.58
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.57
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.56
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.56
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.55
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.55
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.55
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.54
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.54
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.54
3atr_A	453	Conserved archaeal protein; saturating double bond	98.53
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.53
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.52
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.52
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.52
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.51
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.51
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.5
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.5
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.49
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.49
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.49
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.46
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.45
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.45
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.45
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.44
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.44
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.43
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.43
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.43
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.43
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.42
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.42
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.42
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.42
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.41
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.41
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.4
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.4
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.4
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.4
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.4
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.4
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.39
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.39
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.38
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.38
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.38
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.37
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.37
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.37
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.37
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.36
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.35
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.35
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.35
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.34
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.34
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.34
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.33
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.33
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.32
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.32
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.32
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.31
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.31
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.3
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.3
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.29
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.29
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.29
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.28
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.28
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.27
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.27
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.27
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.26
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.26
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.25
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.25
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.24
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.24
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.24
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.23
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.23
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.23
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.23
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.23
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.23
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.22
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.21
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.21
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.21
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.2
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.2
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.2
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.2
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.2
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.19
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.19
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.19
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.18
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.17
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.17
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.17
3atr_A	453	Conserved archaeal protein; saturating double bond	98.16
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.15
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.15
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.15
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.15
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.13
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.13
4dna_A	463	Probable glutathione reductase; structural genomic	98.12
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.11
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.11
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.11
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.11
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.11
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.1
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.1
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.1
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.08
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.07
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.06
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.06
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.06
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.05
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.03
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.01
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.0
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.99
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.99
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.99
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.98
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.97
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.97
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.93
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.92
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.9
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.89
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.88
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.87
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.86
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.83
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.82
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.81
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.81
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.79
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.77
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.77
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.77
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.76
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.76
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.75
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.74
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.72
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.72
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.7
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.7
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.7
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.66
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.65
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.63
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.63
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.62
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.61
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.6
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.59
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.59
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.56
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.54
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.53
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.51
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.49
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.49
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.47
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.46
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.46
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.43
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.41
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.4
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.4
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.39
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.38
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.38
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.37
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.36
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.33
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.32
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.31
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.18
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.17
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.17
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.15
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.13
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.1
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.05
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.0
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.98
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.96
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.85
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.85
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.78
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.78
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.74
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.73
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.72
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.66
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.65
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.54
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.44
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.34
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.33
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.25
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.21
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.08
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.06
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.03
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.02
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.91
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.76
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.73
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.68
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.67
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.66
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.63
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.55
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	95.54
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.49
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.21
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.12
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.7
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.68
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.66
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.64
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.64
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.58
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.54
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.44
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	94.34
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.24
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.19
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	94.19
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.15
3dme_A	369	Conserved exported protein; structural genomics, P	94.14
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	94.0
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.96
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.94
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.92
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.91
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.86
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.85
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.83
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.72
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.71
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	93.7
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	93.69
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	93.67
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	93.64
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.61
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.61
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	93.48
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	93.42
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	93.42
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.36
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.24
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.24
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	93.06
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	93.0
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	93.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	92.99
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.84
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	92.68
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	92.66
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	92.64
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	92.61
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.57
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	92.55
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.45
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.43
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.39
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.36
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	92.35
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.29
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	92.25
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	92.22
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	91.97
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.93
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.92
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	91.9
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.86
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.8
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.8
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	91.63
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.51
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.51
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	91.51
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	91.45
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.4
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	91.39
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.37
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	91.23
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	91.23
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.05
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.91
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.88
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	90.69
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	90.69
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.6
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.57
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	90.56
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	90.52
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	90.43
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.28
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	90.28
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.26
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.19
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	89.96
3tl2_A	315	Malate dehydrogenase; center for structural genomi	89.88
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.59
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	89.54
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	89.54
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.51
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	89.31
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	89.3
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.05
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.69
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	88.67
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	88.62
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	88.58
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	88.43
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.37
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.32
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	88.24
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	88.18
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	88.15
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	88.03
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	87.85
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	87.83
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.81
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.79
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	87.76
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	87.73
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.72
4ezb_A	317	Uncharacterized conserved protein; structural geno	87.68
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	87.67
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	87.63
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	87.62
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	87.59
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	87.57
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.53
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	87.5

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=3.2e-59  Score=472.84  Aligned_cols=396  Identities=30%  Similarity=0.513  Sum_probs=350.7

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      +++++|||||||+||++||.+|+++|+ +.+|+|||+++..+|+++++++.++.... ....+           .....+
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~-~~~~~-----------~~~~~~   73 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREK-TFERI-----------CIRPAQ   73 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSS-CSGGG-----------BSSCHH
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCC-CHHHh-----------ccCCHH
Confidence            345799999999999999999999998 56799999999999999988876654321 11111           245678


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhcc-C
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-A  216 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~-~  216 (497)
                      ++.+.+++++.+++|+.+++..+.+.+++++.+.||+||+|||+.|+. |.++|.+.++++++++..+...+...+.. +
T Consensus        74 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~-~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~  152 (415)
T 3lxd_A           74 FWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRR-LSCVGADLAGVHAVRTKEDADRLMAELDAGA  152 (415)
T ss_dssp             HHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCC-CBTTSSCCBTEECCCSHHHHHHHHHHHHTTC
T ss_pred             HHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCC-CCCCCccccCEEEEcCHHHHHHHHHHhhhcC
Confidence            899999999999999999999999999999999999999999999874 55677777899999999999888887777 9


Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  296 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~  296 (497)
                      ++++|||+|++|+|+|..+.+.|.+|+++++.+.++++.+++.+.+.+.+.++++||++++++.|++++.. ++++..+.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~  231 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVR  231 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEE
Confidence            99999999999999999999999999999999999988889999999999999999999999999999864 56777899


Q ss_pred             eCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccC-CcccccccHHHHHHH
Q 010917          297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY-DRTARVEHVDHARQS  375 (497)
Q Consensus       297 ~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~-g~~~~~~~~~~A~~~  375 (497)
                      +.+|+++++|.||+|+|++|++++++++++..+ ++|.||++++|+.|+|||+|||+..+.... |...++++|..|..|
T Consensus       232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q  310 (415)
T 3lxd_A          232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM  310 (415)
T ss_dssp             ESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SSEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred             eCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CCEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence            999999999999999999999999999999887 459999999999999999999999887666 777889999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCC
Q 010917          376 AQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGS  452 (497)
Q Consensus       376 g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~  452 (497)
                      |+.+|+||++. ..+|..+||||+++|+..       ++++|...+  +.+.+++.+ .+|.++|+++|+|+|+++ .|+
T Consensus       311 g~~aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~  381 (415)
T 3lxd_A          311 ATAAAKDICGA-PVPYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDC-VNM  381 (415)
T ss_dssp             HHHHHHHHTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEE-ESC
T ss_pred             HHHHHHHhcCC-CCCCCCCCeeEeeeCCcE-------EEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEE-ECC
Confidence            99999999974 467999999999999865       899997653  566677764 679999999999999996 899


Q ss_pred             hHHhhHHHHHHhCCCCCChhhhcCCC
Q 010917          453 PEEFQLLPTLARSQPFVDKAKLQQAS  478 (497)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (497)
                      +.....+++|++++..++++.+.|+.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~l~~~~  407 (415)
T 3lxd_A          382 VKDYVQGKKLVEARAQIAPEQLADAG  407 (415)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHTCTT
T ss_pred             hHHHHHHHHHHHCCCCCCHHHhcCCC
Confidence            99999999999999999988887664

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=6e-59  Score=469.02  Aligned_cols=393  Identities=29%  Similarity=0.479  Sum_probs=350.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +++|+|||||+||++||.+|+++|+ +.+|+|||++++.+|++|++++.++.... ....+           .....+++
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~-~~~~~-----------~~~~~~~~   67 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGG-DPNSL-----------MFRPEKFF   67 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCC-CTTSS-----------BSSCHHHH
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCC-CHHHc-----------cCCCHHHH
Confidence            3689999999999999999999998 67899999999999999999876664432 12222           24567889


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  219 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  219 (497)
                      .+.+++++. ++|+.++++.+.+.+++++.+.||+||+|||+.|+ .|.++|.+.++++++++..+...+...+..++++
T Consensus        68 ~~~~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v  145 (404)
T 3fg2_P           68 QDQAIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNR-MLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHV  145 (404)
T ss_dssp             HHTTEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEEC-CCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEE
T ss_pred             HhCCCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCcc-CCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeE
Confidence            999999999 89999999999999999999999999999999887 4556787788999999999999988888889999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  299 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~  299 (497)
                      +|||+|++|+|+|..+.+.|.+|+++++.+.++++.+++++.+.+.+.+++.||++++++.|++++.. ++++..+.+.+
T Consensus       146 vViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~d  224 (404)
T 3fg2_P          146 VVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSD  224 (404)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCC
Confidence            99999999999999999999999999999999988889999999999999999999999999999864 56777899999


Q ss_pred             CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917          300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  379 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~  379 (497)
                      |+++++|.||+|+|++|++++++++++..++ +|.||++++|+.|+|||+|||+..+....|...++++|..|..||+.+
T Consensus       225 G~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-Gi~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~a  303 (404)
T 3fg2_P          225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTAA-GIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCV  303 (404)
T ss_dssp             SCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHH
T ss_pred             CCEEEcCEEEECcCCccCHHHHHhCCCCCCC-CEEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHH
Confidence            9999999999999999999999999999874 599999999999999999999998877778778889999999999999


Q ss_pred             HHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHh
Q 010917          380 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  456 (497)
Q Consensus       380 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  456 (497)
                      |.+|++. ..+|..+||||+++|+..       ++++|...+  +.+.+++.+ .+|.++|+++|+++|+++ .|++...
T Consensus       304 a~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~  374 (404)
T 3fg2_P          304 AARLTGD-AKPYDGYPWFWSDQGDDK-------LQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIES-VNRAADH  374 (404)
T ss_dssp             HHHTTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHH
T ss_pred             HHHhCCC-CCCCCCCCceEeEECCcE-------EEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEE-eCCHHHH
Confidence            9999964 468999999999999865       889997643  566777764 679999999999999996 8999999


Q ss_pred             hHHHHHHhCCCCCChhhhcCCC
Q 010917          457 QLLPTLARSQPFVDKAKLQQAS  478 (497)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~  478 (497)
                      ..+++|++++..++++.+.++.
T Consensus       375 ~~~~~~~~~~~~~~~~~l~~~~  396 (404)
T 3fg2_P          375 VFGRKILPLDKSVTPEQAADLS  396 (404)
T ss_dssp             HHHHHHTTTTCCCCHHHHHCTT
T ss_pred             HHHHHHHHcCCCCCHHHhcCCC
Confidence            9999999999999988887664

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=8.6e-59  Score=468.40  Aligned_cols=391  Identities=27%  Similarity=0.449  Sum_probs=344.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +++|||||||+||++||.+|+++|+ +.+|+|||++++.+|++|++++.++..... ...+            ....+++
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~-~~~~------------~~~~~~~   67 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLE-RPPI------------LAEADWY   67 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSS-SCCB------------SSCTTHH
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCC-HHHh------------cCCHHHH
Confidence            3699999999999999999999998 667999999999999999998765533211 1111            2346788


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  219 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  219 (497)
                      .+.+++++++++|+.+++..+++.+++++++.||+||+|||+.|+. |.++|.+.++++++++..+...+.+.+..++++
T Consensus        68 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~-~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~v  146 (410)
T 3ef6_A           68 GEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRART-MALPGSQLPGVVTLRTYGDVQVLRDSWTSATRL  146 (410)
T ss_dssp             HHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEE
T ss_pred             HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccC-CCCCCccccceEEeccHHHHHHHHHHhccCCeE
Confidence            8999999999999999999999999999999999999999999874 557787788999999999999888877889999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  299 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~  299 (497)
                      +|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++++.+.+.+.++++||++++++.|++++.+  +.+..+.+++
T Consensus       147 vViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~d  224 (410)
T 3ef6_A          147 LIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASD  224 (410)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECC
Confidence            99999999999999999999999999999999987789999999999999999999999999999853  3555789999


Q ss_pred             CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917          300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  379 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~  379 (497)
                      |+++++|.||+|+|.+|+++++++++++.+ ++|.||++++|+.|+|||+|||+..+... |...++++|..|..||+.+
T Consensus       225 g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~a  302 (410)
T 3ef6_A          225 GRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAAV  302 (410)
T ss_dssp             SCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHHH
T ss_pred             CCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHHH
Confidence            999999999999999999999999999987 56999999999999999999999987655 6667788999999999999


Q ss_pred             HHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHh
Q 010917          380 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  456 (497)
Q Consensus       380 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  456 (497)
                      |.+|++. ..+|..+||||+++|+..       ++++|...+  +.+.+++.+ ..|.++|+++|+|+|+++ .|++.+.
T Consensus       303 a~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~  373 (410)
T 3ef6_A          303 AAAILGK-NVSAPQLPVSWTEIAGHR-------MQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVA-VDAPRDF  373 (410)
T ss_dssp             HHHHTTC-CCCCCBCCEEEEEETTEE-------EEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEE-ESCHHHH
T ss_pred             HHHHcCC-CCCCCCCCeeEEEECCce-------EEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEE-ECChHHH
Confidence            9999974 468999999999999865       888997653  567777765 679999999999999996 8999999


Q ss_pred             hHHHHHHhCCCCCChhhhcCCC
Q 010917          457 QLLPTLARSQPFVDKAKLQQAS  478 (497)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~  478 (497)
                      ..+++|++++..++++.+.|+.
T Consensus       374 ~~~~~~i~~~~~~~~~~l~~~~  395 (410)
T 3ef6_A          374 ALATRLVEARAAIEPARLADLS  395 (410)
T ss_dssp             HHHHHHHHHTCBCCHHHHHCTT
T ss_pred             HHHHHHHhCCCCCCHHHhcCCC
Confidence            9999999999999988886654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=1.3e-54  Score=440.33  Aligned_cols=403  Identities=29%  Similarity=0.477  Sum_probs=340.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      +++||+|||||+||++||..|++.|+ +.+|+|||+++..+|.++++++.++.... ....+           .....++
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~~-----------~~~~~~~   69 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKA-TAESL-----------YLRTPDA   69 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCS-CSGGG-----------BSSCHHH
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCC-ChHHh-----------cccCHHH
Confidence            35799999999999999999999997 56899999999999998888775553211 11111           1245678


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc---EEEecCHHHHHHHHHhhcc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEK  215 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g---v~~~~~~~~~~~~~~~~~~  215 (497)
                      +++.+++++.+++|+.++.+.++|.+++|+++.||+||+|||+.|.. |.++|.+.++   ++++++..+...+.+.+..
T Consensus        70 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~-~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~  148 (431)
T 1q1r_A           70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP-LPVASGAVGKANNFRYLRTLEDAECIRRQLIA  148 (431)
T ss_dssp             HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTHHHHSTTEEESSSHHHHHHHHHTCCT
T ss_pred             HHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccC-CCCCCcccCCCceEEEECCHHHHHHHHHHhhc
Confidence            88999999999999999998899999999899999999999999874 5566765556   8888888888888877778


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC-CCCcEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAA  294 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~~~v~~  294 (497)
                      +++++|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|++++.. +++.+..
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~  228 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA  228 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEE
Confidence            999999999999999999999999999999999999887789999999999999999999999999999852 3466667


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHH
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  374 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~  374 (497)
                      +.+.+|+++++|.||+|+|++|+++++++++++.+ ++|.||++++|+.|+|||+|||+..+....|...++++|..|..
T Consensus       229 v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  307 (431)
T 1q1r_A          229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALE  307 (431)
T ss_dssp             EEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHH
T ss_pred             EEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHH
Confidence            88999999999999999999999999999999887 46999999999999999999999987666676667789999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecC
Q 010917          375 SAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESG  451 (497)
Q Consensus       375 ~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~  451 (497)
                      ||+.+|.||++. ..+|..+|++|+++|+..       ++.+|....  +....++.+ ..|.++|.++|+|+|+++ .|
T Consensus       308 qg~~aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g  378 (431)
T 1q1r_A          308 QARKIAAILCGK-VPRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VN  378 (431)
T ss_dssp             HHHHHHHHHTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES
T ss_pred             HHHHHHHHhcCC-CCCCCCCCeEEEEECCce-------EEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEE-EC
Confidence            999999999964 457888999999998754       778886543  455566654 458888989999999996 78


Q ss_pred             ChHHhhHHHHHHhCCCCCChhhhcCCC-cHHHHHH
Q 010917          452 SPEEFQLLPTLARSQPFVDKAKLQQAS-SVEEALE  485 (497)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  485 (497)
                      +......++.++..+..++...+.++. .+.+.++
T Consensus       379 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~  413 (431)
T 1q1r_A          379 RPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIA  413 (431)
T ss_dssp             CHHHHHHHHHHHHTTCCCCHHHHTCTTSCHHHHHH
T ss_pred             ChHHHHHHHHHHHCCCCCCHHHhhCCCCCHHHHHH
Confidence            888888899999999999988776554 3444443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=6e-56  Score=442.39  Aligned_cols=374  Identities=21%  Similarity=0.301  Sum_probs=318.3

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      .++.||||||||+||++||..|+..+   .+|+|||++++.+|.+|++++. +... ....++           .....+
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~---~~itlie~~~~~~y~~~~l~~~-l~g~-~~~~~l-----------~~~~~~   70 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKC---DDITMINSEKYLPYYRPRLNEI-IAKN-KSIDDI-----------LIKKND   70 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTC---SCEEEECSSSSCCBCGGGHHHH-HHSC-CCGGGT-----------BSSCHH
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCC---CEEEEEECCCCCCcccChhhHH-HcCC-CCHHHc-----------cCCCHH
Confidence            44679999999999999999995444   4899999999999999988863 3221 112222           346788


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCC
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  217 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  217 (497)
                      ++++.+++++++++|+.+|++.+++++++|+++.||+||||||+.|+. |.++|.+  +++++++..+...+.+.+..++
T Consensus        71 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~-p~i~G~~--~v~~~~~~~d~~~l~~~l~~~~  147 (385)
T 3klj_A           71 WYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANK-IKVPHAD--EIFSLYSYDDALKIKDECKNKG  147 (385)
T ss_dssp             HHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CCCTTCS--CEECCSSHHHHHHHHHHHHHHS
T ss_pred             HHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCC-CCCCCCC--CeEEeCCHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999874 5567755  8899999999988888777789


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  297 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~  297 (497)
                      +|+|||+|++|+|+|..|++.|.+||++++.+.++++.+++++.+.+.+.+++.||++++++.++++             
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------  214 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------  214 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------
Confidence            9999999999999999999999999999999999988789999999999999999999999887665             


Q ss_pred             CCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHH
Q 010917          298 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  377 (497)
Q Consensus       298 ~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  377 (497)
                        |+++++|.||+|+|++|++++++++++..+ ++|.||++++|+.|+|||+|||+..+...      ..+|..|..||+
T Consensus       215 --g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~  285 (385)
T 3klj_A          215 --GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQGE  285 (385)
T ss_dssp             --HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SSEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHHH
T ss_pred             --CeEEecCeEEECcCcccChhhhhhcCCCcC-CCEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHHH
Confidence              567999999999999999999999999887 45999999999999999999999876532      237888999999


Q ss_pred             HHHHHHhcCCCCCCCC-CCceeeeccccCCCCcceeeEEeecCCC---cEEEEccCCCcEEEEEEECCEEEEEEeecCCh
Q 010917          378 HCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSP  453 (497)
Q Consensus       378 ~~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  453 (497)
                      .+|.+|++. ..+|.. +|++|+++|+..       ++++|...+   +.+.+...+..|.++|+++|+|+|+++ .|+.
T Consensus       286 ~aa~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~g~~  356 (385)
T 3klj_A          286 VAGLNACGE-DASYSEIIPSPILKVSGIS-------IISCGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAV-IGDV  356 (385)
T ss_dssp             HHHHHHTTC-CCCCCCCCCCCEEEETTEE-------EEEESCCTTCCCSEEEEEECSSCEEEEEEETTEEEEEEE-ESCH
T ss_pred             HHHHHhcCC-CcCCCCCCCcEEEEeCCCc-------EEEEcCCCCCCCeEEEEECCCCeEEEEEEECCEEEEEEE-ECCc
Confidence            999999974 456766 699999999865       888887653   334442224679999999999999996 7888


Q ss_pred             HHhhHHHHHHhCCCCCChhhhcCCCcHHHHHHH
Q 010917          454 EEFQLLPTLARSQPFVDKAKLQQASSVEEALEI  486 (497)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (497)
                      .....++++++++.+++.-     +|++|.++.
T Consensus       357 ~~~~~~~~~i~~~~~~~~~-----~~~~E~~~~  384 (385)
T 3klj_A          357 SLGTKLKKAIDSSKSFDNI-----SSLDAILNN  384 (385)
T ss_dssp             HHHHHHHHHHHTTCBCSCC-----SCHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCcccc-----cCHHHHHhh
Confidence            8888999999999877643     899998863

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=1.1e-54  Score=438.01  Aligned_cols=392  Identities=26%  Similarity=0.401  Sum_probs=330.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      +++||+|||||+||++||..|++.|+ +.+|+|||+++..+|.++++++.++....  ..++             .+. +
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~-~   68 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGD--AEKI-------------RLD-C   68 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCC--GGGS-------------BCC-C
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCc--hhhh-------------hHH-H
Confidence            45799999999999999999999997 56799999999999998887765543211  1111             011 4


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCC-CCCCCCcEEEecCHHHHHHHHHhhccCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAK  217 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~-~g~~~~gv~~~~~~~~~~~~~~~~~~~~  217 (497)
                      +++.+++++.+++|+.++.+.+++.+++++.+.||+||+|||+.|.. |.+ +|.+ ++++++++..+...+.+.+..++
T Consensus        69 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~-~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~  146 (408)
T 2gqw_A           69 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA-LPTLQGAT-MPVHTLRTLEDARRIQAGLRPQS  146 (408)
T ss_dssp             TTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTCS-SCEEECCSHHHHHHHHTTCCTTC
T ss_pred             HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCC-CCccCCCC-CcEEEECCHHHHHHHHHHhhcCC
Confidence            56789999999889999999999999999899999999999999874 555 7765 78988888888888877777789


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  297 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~  297 (497)
                      +++|||+|++|+|+|..|++.|.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|++++ +  +   .+++
T Consensus       147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~  220 (408)
T 2gqw_A          147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLL  220 (408)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEE
Confidence            99999999999999999999999999999999999877899999999999999999999999999998 3  2   5778


Q ss_pred             CCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHH
Q 010917          298 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  377 (497)
Q Consensus       298 ~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  377 (497)
                      .+|+++++|.||+|+|++|+++++++++++.++ +|.||++++|+.|+|||+|||+..+....|...+.++|..|..||+
T Consensus       221 ~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  299 (408)
T 2gqw_A          221 DDGTRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGI  299 (408)
T ss_dssp             TTSCEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHH
T ss_pred             CCCCEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHH
Confidence            899999999999999999999999999998874 5999999999999999999999987655566666778999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeec-CCCcEEEEccCC---CcEEEEEEECCEEEEEEeecCCh
Q 010917          378 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD-NVGETIEIGNFD---PKIATFWIDSGKLKGVLVESGSP  453 (497)
Q Consensus       378 ~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~  453 (497)
                      .+|.||++....+|..+|++|+++|+..       ++++|. ..++....++..   ..|.++|.++|+|+|+++ .++.
T Consensus       300 ~aa~~i~g~~~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g~~  371 (408)
T 2gqw_A          300 AVARHLVDPTAPGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNA  371 (408)
T ss_dssp             HHHHHHHCTTSCCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEE-ESCH
T ss_pred             HHHHHhcCCCCCcCCCCCeEEEEECCce-------EEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEE-ECCh
Confidence            9999999643227888999999999864       778886 223455566653   568899999999999996 7777


Q ss_pred             HHhhHHHHHHhCCCCCChhhhcCCC-cHHHHH
Q 010917          454 EEFQLLPTLARSQPFVDKAKLQQAS-SVEEAL  484 (497)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  484 (497)
                      .....++.+++++.+++...+.++. .+.+.+
T Consensus       372 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~  403 (408)
T 2gqw_A          372 RDFAPLRRLLAVGAKPDRAALADPATDLRKLA  403 (408)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHCTTCCHHHHH
T ss_pred             HHHHHHHHHHHCCCCCChHHhcCCCCCHHHHh
Confidence            8888999999999999988776654 344433

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=7.7e-52  Score=426.61  Aligned_cols=406  Identities=22%  Similarity=0.344  Sum_probs=309.7

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCC------CCCCCcc---cc
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA------RLPGFHT---CV  127 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~------~~~~~~~---~~  127 (497)
                      ++..++|||||||+||++||..|++.++ ..+|+|||++++.+|.+|++++.++........      .+++...   +.
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQ   86 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSS
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhccccccccccccccccc
Confidence            3456799999999999999999999854 559999999999999999888766543221000      0000000   00


Q ss_pred             CCCCCCCCHh--HHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC----CCcEEEec
Q 010917          128 GSGGERQTPE--WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIR  201 (497)
Q Consensus       128 ~~~~~~~~~~--~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~----~~gv~~~~  201 (497)
                      ..........  .+.+.+++++++++|+.++++.++|.+++|+++.||+||||||++|+.+| .++..    .+++++++
T Consensus        87 ~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~-~~~~~~~~~~~~v~~~~  165 (493)
T 1m6i_A           87 PPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLS-AIDRAGAEVKSRTTLFR  165 (493)
T ss_dssp             CGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCH-HHHTSCHHHHHTEEECC
T ss_pred             chHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC-CcccccccccCceEEEc
Confidence            0000000000  11356899999999999999999999999999999999999999987543 23321    35788888


Q ss_pred             CHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEc
Q 010917          202 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       202 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~----~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                      +..++..+...+..+++++|||+|++|+|+|..|++    .|.+|+++++.+.++.+.+++.+.+.+.+.++++||++++
T Consensus       166 ~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~  245 (493)
T 1m6i_A          166 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP  245 (493)
T ss_dssp             SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred             CHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEe
Confidence            888888887777789999999999999999999987    5788999999888887778899999999999999999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc--CCCEEecCCCCCCCCcEEEecccccc
Q 010917          278 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAF  355 (497)
Q Consensus       278 ~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~iya~GD~~~~  355 (497)
                      ++.|++++.. ++.+ .+.+.+|+++++|.||+|+|.+||++++++++++.+  +|+|.||+++|| .|+|||+|||+..
T Consensus       246 ~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~  322 (493)
T 1m6i_A          246 NAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACF  322 (493)
T ss_dssp             SCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEE
T ss_pred             CCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEec
Confidence            9999999853 3333 688899999999999999999999999999998876  379999999998 6999999999987


Q ss_pred             CCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccccCCCCc----ceeeEEeecCCC-----c----
Q 010917          356 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFGDNVG-----E----  422 (497)
Q Consensus       356 ~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~g~~~~-----~----  422 (497)
                      +....|.. ++++|.+|..||+.+|.||++ ...+|...||||++++...+...    ...++++|....     .    
T Consensus       323 ~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g-~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~  400 (493)
T 1m6i_A          323 YDIKLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSA  400 (493)
T ss_dssp             EETTTEEE-CCCCHHHHHHHHHHHHHHHTS-CCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHHH
T ss_pred             cCcccCcc-ccchHHHHHHHHHHHHHHhcC-CCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccccccccc
Confidence            76554543 577999999999999999996 45789999999999983211000    001333332100     0    


Q ss_pred             --------------------EEEE----c-------c-CCCcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhCCCCCC
Q 010917          423 --------------------TIEI----G-------N-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD  470 (497)
Q Consensus       423 --------------------~~~~----~-------~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  470 (497)
                                          ....    |       + ...+|.+||+++|+|+|+++ .|+++.+..+++|++.+..++
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~li~~~~~~~  479 (493)
T 1m6i_A          401 TEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHE  479 (493)
T ss_dssp             HHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEE-ecCcchHHHHHHHHhCCCCCC
Confidence                                0000    1       1 12567889999999999996 899999999999998887665

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=6e-50  Score=406.31  Aligned_cols=393  Identities=20%  Similarity=0.282  Sum_probs=303.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  140 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (497)
                      +|||||||||||++||..|++.|. +.+|+|||++++.+|.++.++. ++..........          .......+++
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~----------~~~~~~~~~~   68 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-VIGEVVEDRRYA----------LAYTPEKFYD   68 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHH-HHTTSSCCGGGT----------BCCCHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHH-HHcCCccchhhh----------hhcCHHHHHH
Confidence            479999999999999999999996 6789999999999898876653 111111111000          0123456788


Q ss_pred             HcCcEEEeCCcEEEEecCCCEEEECCC-----cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh--
Q 010917          141 EKGIEMIYQDPVTSIDIEKQTLITNSG-----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--  213 (497)
Q Consensus       141 ~~~v~~~~~~~v~~i~~~~~~v~~~~g-----~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--  213 (497)
                      +.+++++.+++|+.+|.+.+.+.+.++     .++.||+||||||++|+. |.++   .++++.++++.++..+.+.+  
T Consensus        69 ~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~-p~i~---g~~~~~~~~~~~~~~l~~~~~~  144 (437)
T 4eqs_A           69 RKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS-LGFE---SDITFTLRNLEDTDAIDQFIKA  144 (437)
T ss_dssp             HHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECC-CCCC---CTTEECCSSHHHHHHHHHHHHH
T ss_pred             hcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccc-cccc---CceEEeeccHHHHHHHHHhhhc
Confidence            899999999999999999988766432     368999999999999874 4333   35678888888887776654  


Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      ..+++++|||+|++|+|+|..++++|.+||++++.+++++. +++++.+.+.+.++++||+++++++|++++..      
T Consensus       145 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~------  217 (437)
T 4eqs_A          145 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAINGN------  217 (437)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEETT------
T ss_pred             cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecCC------
Confidence            35789999999999999999999999999999999999975 79999999999999999999999999999743      


Q ss_pred             EEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHH
Q 010917          294 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  372 (497)
Q Consensus       294 ~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A  372 (497)
                      .+.+++|+++++|.|++|+|++||+++++.+|++.+ +|+|.||+++||++|||||+|||+..+....+.....+.+..|
T Consensus       218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A  297 (437)
T 4eqs_A          218 EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGA  297 (437)
T ss_dssp             EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHH
T ss_pred             eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHH
Confidence            578899999999999999999999999999999876 5779999999999999999999999888777777777788899


Q ss_pred             HHHHHHHHHHHhcCCCCCCC-CCCceeeeccccCCCCcceeeEEeecCCCc-------EEE--Ecc---C----CCcEEE
Q 010917          373 RQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE--IGN---F----DPKIAT  435 (497)
Q Consensus       373 ~~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~--~~~---~----~~~~~~  435 (497)
                      .+||+.+|+||++.....+. ..+..+...++..       +..+|....+       ...  ...   .    ...+.|
T Consensus       298 ~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~K  370 (437)
T 4eqs_A          298 HRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLR  370 (437)
T ss_dssp             HHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEE-------EEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCcccccceeEEeeeeccce-------EEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEE
Confidence            99999999999986544432 3333333333322       5556654321       111  111   0    123667


Q ss_pred             EEEE--CCEEEEEEeecCC-hHHhh-HHHHHHhCCCCCC-hhh--hcCCCcHHHH
Q 010917          436 FWID--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVD-KAK--LQQASSVEEA  483 (497)
Q Consensus       436 ~~~~--~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~  483 (497)
                      +.++  +++|+|+++++.+ ++++. .+..+|+++.+++ ...  +..||+++++
T Consensus       371 li~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~  425 (437)
T 4eqs_A          371 VYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHP  425 (437)
T ss_dssp             EEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred             EEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCch
Confidence            7765  4899999986654 66655 4456688998886 333  3557888765

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=1.4e-49  Score=406.51  Aligned_cols=403  Identities=20%  Similarity=0.263  Sum_probs=312.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC--CCCCCCCCccccCCCCCCCCHhH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK--KPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      +||+|||||+||++||..|++.+. ..+|+|||+++..+|....+.. ++.....  .+..+           .....++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~g~~~~~~~~~~-----------~~~~~~~   67 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHP-DADVTAYEMNDNISFLSCGIAL-YLGKEIKNNDPRGL-----------FYSSPEE   67 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEEESSSCCCBCGGGHHH-HHTTCBGGGCGGGG-----------BSCCHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCcccccchh-hhcCCcccCCHHHh-----------hhcCHHH
Confidence            489999999999999999999832 3389999999876664332211 1111000  01111           2345677


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECC-----CcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  213 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~-----g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  213 (497)
                      +++.+++++.+++|..++.+.+++.+.+     +..+.||+||+|||+.|. .|.++|.+.+++++++++.++..+.+..
T Consensus        68 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~  146 (452)
T 2cdu_A           68 LSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT-VPPIPGIDSSRVYLCKNYNDAKKLFEEA  146 (452)
T ss_dssp             HHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred             HHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC-CCCCCCCCCCCEEEeCcHHHHHHHHHHh
Confidence            8889999999989999998888887754     467999999999999987 4566777667899999999998888888


Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      ..+++++|||+|++|+|+|..|+++|.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|++++.. ++++.
T Consensus       147 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~  225 (452)
T 2cdu_A          147 PKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEII  225 (452)
T ss_dssp             GGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEE
T ss_pred             ccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEE
Confidence            88999999999999999999999999999999999999986789999999999999999999999999999853 45554


Q ss_pred             EEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHH
Q 010917          294 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  372 (497)
Q Consensus       294 ~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A  372 (497)
                      .+.+ +|+++++|.||+|+|++|+++++++. ++.+ +|+|.||+++||+.|+|||+|||+..+....|...+..++..|
T Consensus       226 ~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  303 (452)
T 2cdu_A          226 TKTL-DGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNA  303 (452)
T ss_dssp             EEET-TSCEEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHH
T ss_pred             EEEe-CCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHH
Confidence            5555 78899999999999999999988877 7764 5779999999999999999999999766555554455688899


Q ss_pred             HHHHHHHHHHHhcCCCCCC-CCCCceeeeccccCCCCcceeeEEeecCCCc-------EE---EE--cc------CCCcE
Q 010917          373 RQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI---EI--GN------FDPKI  433 (497)
Q Consensus       373 ~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~---~~--~~------~~~~~  433 (497)
                      ..||+.+|.||++.. .++ ...|++|+.+|+..       +..+|....+       ..   ..  +.      ....+
T Consensus       304 ~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (452)
T 2cdu_A          304 VRQGRLVGLNLTEDK-VKDMGTQSSSGLKLYGRT-------YVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVL  375 (452)
T ss_dssp             HHHHHHHHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEE
T ss_pred             HHHHHHHHHHhCCCC-CcCCCccceEEEEECCee-------eEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEE
Confidence            999999999999643 334 34678899888653       6677765321       11   10  11      11236


Q ss_pred             EEEEEE--CCEEEEEEeecC-ChHHh-hHHHHHHhCCCCCCh-hh--hcCCCcHHHHHHHHH
Q 010917          434 ATFWID--SGKLKGVLVESG-SPEEF-QLLPTLARSQPFVDK-AK--LQQASSVEEALEIAR  488 (497)
Q Consensus       434 ~~~~~~--~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~  488 (497)
                      .+++++  +++|+|+++++. ++.++ ..+..+++.+.+++. ..  ++.|||++|++..+.
T Consensus       376 ~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~  437 (452)
T 2cdu_A          376 MSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNYLN  437 (452)
T ss_dssp             EEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSCHHH
T ss_pred             EEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHHHHH
Confidence            677764  589999998766 45554 456778888888763 32  577999998755443

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=9.5e-49  Score=388.62  Aligned_cols=354  Identities=23%  Similarity=0.400  Sum_probs=281.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      ..||+|||||+||++||..|++.|    +|+|||+++..+|.++.+++ ++... .....+           .....+++
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g----~V~lie~~~~~~~~~~~l~~-~~~g~-~~~~~~-----------~~~~~~~~   70 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAGF-IPRNRL-----------FPYSLDWY   70 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS----EEEEECSSSSCCCCSTTHHH-HHTTS-SCGGGG-----------CSSCHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC----CEEEEECCCCCccccchhHH-HHhCC-CCHHHh-----------ccCCHHHH
Confidence            469999999999999999998875    89999999988888776654 22211 111111           23467888


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  219 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  219 (497)
                      ++.+++++++++|+.+++..++|. .+++++.||+||||||++|.. |.++|  .++++++++..+...+.+.+.+++++
T Consensus        71 ~~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~-p~i~G--~~~v~~~~~~~~~~~l~~~~~~~~~v  146 (367)
T 1xhc_A           71 RKRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARARE-PQIKG--KEYLLTLRTIFDADRIKESIENSGEA  146 (367)
T ss_dssp             HHHTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECC-CCSBT--GGGEECCCSHHHHHHHHHHHHHHSEE
T ss_pred             HhCCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCC-CCCCC--cCCEEEEcCHHHHHHHHHHhhcCCcE
Confidence            899999999989999999988888 777889999999999999874 55666  56788888888888877766667999


Q ss_pred             EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917          220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  299 (497)
Q Consensus       220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~  299 (497)
                      +|||+|++|+|+|..|+++|.+|+++++.+.+++  +++++.+.+.+.+++.||+++++++|++++..      .+.+++
T Consensus       147 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~------~v~~~~  218 (367)
T 1xhc_A          147 IIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANEE------GVLTNS  218 (367)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECSS------EEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEee------EEEECC
Confidence            9999999999999999999999999999999887  89999999999999999999999999999721      477888


Q ss_pred             CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917          300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  379 (497)
Q Consensus       300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~  379 (497)
                      |+ +++|.||+|+|++|+++++++++++.+ ++|.||+++||+.|+|||+|||+......      ...+..|..||+.+
T Consensus       219 g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~a  290 (367)
T 1xhc_A          219 GF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQARVL  290 (367)
T ss_dssp             EE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHHHH
T ss_pred             CE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHHHH
Confidence            88 999999999999999999999999887 56999999999999999999999764321      12677899999999


Q ss_pred             HHHHhcCCCCCCCCCCceee-eccccCCCCcceeeEEeecCCCcEEEEccCCCcEEEEEEECCEEEEEEeecCChHHhhH
Q 010917          380 IKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQL  458 (497)
Q Consensus       380 a~~i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  458 (497)
                      |.||++. ..+|...+++|+ ..++..       +..+|....+....    ..|.++++++++|+|+++ .+.......
T Consensus       291 a~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~~~~~----~~~~k~~~~~~~ilG~~~-~g~~~~~~~  357 (367)
T 1xhc_A          291 ADILKGE-PRRYNFKFRSTVFKFGKLQ-------IAIIGNTKGEGKWI----EDNTKVFYENGKIIGAVV-FNDIRKATK  357 (367)
T ss_dssp             HHHHTTC-CCCCCSSCCEEEEEETTEE-------EEEEECCSSCEEEE----ETTEEEEC-----CEEEE-ESCHHHHHH
T ss_pred             HHHhcCC-CccCCCCCCceEEEECCce-------EEEECCCCCCCccc----ceEEEEEEECCEEEEEEE-ECChHHHHH
Confidence            9999964 456666555543 555433       77788766532211    446788888899999996 777777888


Q ss_pred             HHHHH
Q 010917          459 LPTLA  463 (497)
Q Consensus       459 ~~~~~  463 (497)
                      +++++
T Consensus       358 ~~~~i  362 (367)
T 1xhc_A          358 LEKEI  362 (367)
T ss_dssp             HC---
T ss_pred             HHHHH
Confidence            88776

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=1.8e-48  Score=398.11  Aligned_cols=396  Identities=19%  Similarity=0.231  Sum_probs=302.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  140 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (497)
                      +||+|||||+||++||..|++++. ..+|+|||+++...|.++.+.. ++.........+           .....+++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~   69 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYP-QAEISLIDKQATVGYLSGGLSA-YFNHTINELHEA-----------RYITEEELR   69 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCCSSCCC----------------------------CCCCHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCcccCccchh-hhcCCCCCHHHh-----------hcCCHHHHH
Confidence            699999999999999999999842 3499999999988776554432 221111111111           234678889


Q ss_pred             HcCcEEEeCCcEEEEecCCCEEEEC---CCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCC
Q 010917          141 EKGIEMIYQDPVTSIDIEKQTLITN---SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  217 (497)
Q Consensus       141 ~~~v~~~~~~~v~~i~~~~~~v~~~---~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  217 (497)
                      +.+++++++++|+.++++.+.+.+.   ++..+.||+||+|||+.|. .|.++|.+.+++++.+++.++..+.+....++
T Consensus        70 ~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~  148 (452)
T 3oc4_A           70 RQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQF-STQIRGSQTEKLLKYKFLSGALAAVPLLENSQ  148 (452)
T ss_dssp             HTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBC-CCCCBTTTCTTEEEGGGCC----CCHHHHTCS
T ss_pred             HCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCC
Confidence            9999999999999999998888763   5567999999999999987 46677877788888877777777666667789


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  297 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~  297 (497)
                      +++|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|++++.. ++.+ .+.+
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~  226 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLET  226 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEE
Confidence            9999999999999999999999999999999999987789999999999999999999999999999854 4455 6777


Q ss_pred             CCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHH
Q 010917          298 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA  376 (497)
Q Consensus       298 ~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g  376 (497)
                      +++ ++++|.||+|+|++|++++++.. +..+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..||
T Consensus       227 ~~g-~i~aD~Vv~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g  304 (452)
T 3oc4_A          227 SEQ-EISCDSGIFALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTG  304 (452)
T ss_dssp             SSC-EEEESEEEECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHH
T ss_pred             CCC-EEEeCEEEECcCCCCChHHHHhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHH
Confidence            777 89999999999999999988654 5554 67899999999999999999999997765555544455788899999


Q ss_pred             HHHHHHHhcCCCCCCC-CCCceeeeccccCCCCcceeeEEeecCCCc-------E--EEE---c----cCCCcEEEEEEE
Q 010917          377 QHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEI---G----NFDPKIATFWID  439 (497)
Q Consensus       377 ~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~--~~~---~----~~~~~~~~~~~~  439 (497)
                      +.+|.||++.. ..+. ..+..++.+|+..       +..+|....+       .  ...   .    +....+.|+.++
T Consensus       305 ~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~  376 (452)
T 3oc4_A          305 LVVANNLEEKT-HRFIGSLRTMGTKVGDYY-------LASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYD  376 (452)
T ss_dssp             HHHTTSSSSCC-CCCCCCCCCEEEEETTEE-------EEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEE
T ss_pred             HHHHHHhcCCC-ccCCCccccEEEEEcCee-------EEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEE
Confidence            99999999743 3343 3445667777643       6667765431       1  110   0    012347788776


Q ss_pred             C--CEEEEEEeecC-ChHH-hhHHHHHHhCCCCCC-hhh--hcCCCcHHH
Q 010917          440 S--GKLKGVLVESG-SPEE-FQLLPTLARSQPFVD-KAK--LQQASSVEE  482 (497)
Q Consensus       440 ~--~~~~g~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~~  482 (497)
                      .  ++|+|+++++. ++.+ +..+..+++.+.+++ ...  +..||+++|
T Consensus       377 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~  426 (452)
T 3oc4_A          377 KVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTN  426 (452)
T ss_dssp             TTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSC
T ss_pred             CCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCC
Confidence            4  89999998776 4555 445667789998886 332  468888888

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=1.1e-48  Score=402.01  Aligned_cols=411  Identities=22%  Similarity=0.320  Sum_probs=290.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      ++||+|||||+||++||..|++++. ..+|+|||+++..+|.++.++. ++.........+....    .. .....+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~-g~~Vtvie~~~~~~~~~~gl~~-~~~g~~~~~~~~~~~~----~~-~~~~~~~~   75 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDP-EAHVTMIDQASRISYGGCGIPY-YVSGEVSNIESLQATP----YN-VVRDPEFF   75 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCT-TSEEEEECCC--------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCcccccccccch-hhcCCCCchHHhcccc----ch-hccCHHHH
Confidence            4799999999999999999999942 3499999999998887765543 2211111111110000    00 01223334


Q ss_pred             H-HcCcEEEeCCcEEEEecCCCEEEECC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 010917          140 K-EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  213 (497)
Q Consensus       140 ~-~~~v~~~~~~~v~~i~~~~~~v~~~~---g~--~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  213 (497)
                      . +.+++++++++|+.++++.+.+.+.+   |.  .+.||+||+|||+.|. .|.++|.+.++++++++..+...+.+.+
T Consensus        76 ~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~l  154 (472)
T 3iwa_A           76 RINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN-RPPVEGMDLAGVTPVTNLDEAEFVQHAI  154 (472)
T ss_dssp             -----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCSCTTTTSBTEEECCSHHHHHHHHHHC
T ss_pred             hhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHh
Confidence            4 57999999999999999999888765   55  7899999999999887 4667787778888888888888777655


Q ss_pred             c--cCCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC
Q 010917          214 E--KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  290 (497)
Q Consensus       214 ~--~~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~  290 (497)
                      .  .+++++|||+|++|+|+|..|.+. |.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|++++.. ++
T Consensus       155 ~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~  233 (472)
T 3iwa_A          155 SAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NG  233 (472)
T ss_dssp             CTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SS
T ss_pred             hcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CC
Confidence            3  479999999999999999999999 9999999999999986689999999999999999999999999999863 45


Q ss_pred             cEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccH
Q 010917          291 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  369 (497)
Q Consensus       291 ~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~  369 (497)
                      .+. +.+.+|+++++|.||+|+|++|++++++++|++.+ +|+|.||++++|+.|+|||+|||+..+....|.....+++
T Consensus       234 ~v~-v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~  312 (472)
T 3iwa_A          234 KVA-RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLG  312 (472)
T ss_dssp             BEE-EEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCT
T ss_pred             eEE-EEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchH
Confidence            543 77889999999999999999999999988999875 6889999999999999999999998777666655555677


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E--EEEc---------cCCC
Q 010917          370 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG---------NFDP  431 (497)
Q Consensus       370 ~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~--~~~~---------~~~~  431 (497)
                      ..|..||+.+|.||++........+|++|+..|+..       +..+|....+       .  ....         +...
T Consensus       313 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  385 (472)
T 3iwa_A          313 SMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGS-------ASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTI  385 (472)
T ss_dssp             THHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCE-------EEEEECCHHHHHHTTCCEEEEEEEC-----------C
T ss_pred             HHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCce-------eEEEECCHHHHHHcCCceEEEEEecCCccCccCCCce
Confidence            789999999999999754433345678888777643       6667765321       1  1100         1113


Q ss_pred             cEEEEEEE--CCEEEEEEeecC---ChHH-hhHHHHHHhCCCCCC-hhh-hcCC-CcHHHHHHHH
Q 010917          432 KIATFWID--SGKLKGVLVESG---SPEE-FQLLPTLARSQPFVD-KAK-LQQA-SSVEEALEIA  487 (497)
Q Consensus       432 ~~~~~~~~--~~~~~g~~~~~~---~~~~-~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~  487 (497)
                      .+.|+.++  +++|+|+++++.   .+.+ +..+..+++.+.+++ ... .+.+ |+++|++...
T Consensus       386 ~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~  450 (472)
T 3iwa_A          386 MTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMDIV  450 (472)
T ss_dssp             EEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CCHH
T ss_pred             EEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCcccHH
Confidence            46777775  589999998665   2234 445566788888876 333 2343 8998876543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.5e-48  Score=393.41  Aligned_cols=398  Identities=21%  Similarity=0.265  Sum_probs=303.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      ++||+|||||+||++||..|++.+. ..+|+|||+++...|....++. ++... .....+           ..+..+++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~-~~~~~-~~~~~~-----------~~~~~~~~   68 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPY-VVEGL-STPDKL-----------MYYPPEVF   68 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-------------------------------------CTH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCcc-ccCCC-CCHHHh-----------hhcCHHHH
Confidence            5799999999999999999999853 4499999999877665433322 11111 111111           12233445


Q ss_pred             -HHcCcEEEeCCcEEEEecCCCEEEECCC-cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc--c
Q 010917          140 -KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--K  215 (497)
Q Consensus       140 -~~~~v~~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~  215 (497)
                       ++.+++++++++|+.++...+.+.++++ ..+.||+||+|||+.|. .|.++|.+.+++++.++..+...+.+...  .
T Consensus        69 ~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~  147 (449)
T 3kd9_A           69 IKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ-VPAIEGVNLKGVFTADLPPDALAIREYMEKYK  147 (449)
T ss_dssp             HHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC-CCSCBTTTSTTEECSCSTHHHHHHHHHHSSSC
T ss_pred             HHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcC
Confidence             6889999999999999998888888877 48999999999999986 46678877788888888888877777665  7


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  295 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v  295 (497)
                      +++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.+++. |++++++.+.+++..  +.+..+
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~v  224 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGE--ERVEKV  224 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECS--SSCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEEE
Confidence            89999999999999999999999999999999999998768999999999999999 999999999999853  233333


Q ss_pred             EeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHH
Q 010917          296 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  374 (497)
Q Consensus       296 ~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~  374 (497)
                       +.+++++++|.||+|+|++|++++++.+|++.+ +|+|.||++++|+.|+|||+|||+..+....|.......+..|..
T Consensus       225 -~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~  303 (449)
T 3kd9_A          225 -VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNK  303 (449)
T ss_dssp             -EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHH
T ss_pred             -EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHH
Confidence             457788999999999999999999999999876 577999999999999999999999877665565545668889999


Q ss_pred             HHHHHHHHHhcCCCCCCC-CCCceeeeccccCCCCcceeeEEeecCCCc-------EE---E--Ecc--C----CCcEEE
Q 010917          375 SAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI---E--IGN--F----DPKIAT  435 (497)
Q Consensus       375 ~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~---~--~~~--~----~~~~~~  435 (497)
                      ||+.+|.||++.. ..+. ..|++|+..++..       +..+|....+       +.   +  .+.  .    ...|.|
T Consensus       304 ~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k  375 (449)
T 3kd9_A          304 MGYVAGSNIAGKE-LHFPGVLGTAVTKFMDVE-------IGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLK  375 (449)
T ss_dssp             HHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEE
T ss_pred             HHHHHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEE
Confidence            9999999999754 3443 4677888877754       6777765321       11   0  110  0    134778


Q ss_pred             EEEEC--CEEEEEEeecCChHHhhH-HHHHHhCCCCCC-hhh--hcCCCcHHHHH
Q 010917          436 FWIDS--GKLKGVLVESGSPEEFQL-LPTLARSQPFVD-KAK--LQQASSVEEAL  484 (497)
Q Consensus       436 ~~~~~--~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~~~~~~  484 (497)
                      +.++.  ++|+|+++++..+.++.. +..+++.+.+++ ...  +..+|+++|+.
T Consensus       376 li~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~  430 (449)
T 3kd9_A          376 GVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVW  430 (449)
T ss_dssp             EEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSS
T ss_pred             EEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCch
Confidence            87764  899999987777776554 456678888776 333  35677776654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=4.2e-48  Score=395.09  Aligned_cols=404  Identities=20%  Similarity=0.278  Sum_probs=308.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  140 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (497)
                      +||+|||||+||++||..|++.+. ..+|+|||+++..+|....+.. ++........++           .....++++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~   67 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKME   67 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCc-CCeEEEEECCCccCcccccchh-hhcCccCCHHHh-----------hcCCHHHHH
Confidence            389999999999999999999832 3389999999876654322211 111110111111           234567888


Q ss_pred             HcCcEEEeCCcEEEEecCCCEEEECC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc-
Q 010917          141 EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-  214 (497)
Q Consensus       141 ~~~v~~~~~~~v~~i~~~~~~v~~~~---g~--~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-  214 (497)
                      +.+++++.+++++.++.+.+.+.+.+   |+  ++.||+||+|||+.|. .|.++|.+.++++++++..+...+.+.+. 
T Consensus        68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~  146 (447)
T 1nhp_A           68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF-ELDIPGKDLDNIYLMRGRQWAIKLKQKTVD  146 (447)
T ss_dssp             HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCSTTTTSBSEECCCHHHHHHHHHHHHTC
T ss_pred             HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHhhh
Confidence            89999999999999999888887754   54  4899999999999987 45677776678888888888877777666 


Q ss_pred             -cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          215 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       215 -~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                       .+++++|||+|++|+|+|..|++.|.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|++++..  +.+.
T Consensus       147 ~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~  224 (447)
T 1nhp_A          147 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQ  224 (447)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCC
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEE
Confidence             7899999999999999999999999999999999998886689999999999999999999999999999853  4443


Q ss_pred             EEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHH
Q 010917          294 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  372 (497)
Q Consensus       294 ~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A  372 (497)
                      .+.+ +++++++|.||+|+|.+|++++++.. ++.+ +|+|.||++++|+.|+|||+|||+..+....|......++..|
T Consensus       225 ~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A  302 (447)
T 1nhp_A          225 KVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNA  302 (447)
T ss_dssp             EEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHH
T ss_pred             EEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHH
Confidence            4555 56789999999999999999988877 7664 5779999999999999999999998765544544445688899


Q ss_pred             HHHHHHHHHHHhcCCCCCCC-CCCceeeeccccCCCCcceeeEEeecCCCc-------EE---EEc--c--C----CCcE
Q 010917          373 RQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI---EIG--N--F----DPKI  433 (497)
Q Consensus       373 ~~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~---~~~--~--~----~~~~  433 (497)
                      ..||+.+|.||++.. .++. ..|++|+..++..       +..+|....+       ..   ...  .  .    ...+
T Consensus       303 ~~qg~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  374 (447)
T 1nhp_A          303 RKQGRFAVKNLEEPV-KPFPGVQGSSGLAVFDYK-------FASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAW  374 (447)
T ss_dssp             HHHHHHHHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEE
T ss_pred             HHHHHHHHHhhcCCC-CCCCCccccEEEEECCee-------eEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEE
Confidence            999999999999643 3443 4578888877653       6667754321       10   111  0  0    1236


Q ss_pred             EEEEEE--CCEEEEEEeecCC-hHH-hhHHHHHHhCCCCCCh-hh--hcCCCcHHHHHHHHHcc
Q 010917          434 ATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDK-AK--LQQASSVEEALEIARAA  490 (497)
Q Consensus       434 ~~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~  490 (497)
                      .+++++  +++|+|+++++.. +.+ +..+..+++.+.+++. ..  ++.|||++|++..+..+
T Consensus       375 ~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~a  438 (447)
T 1nhp_A          375 FKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTA  438 (447)
T ss_dssp             EEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHHHH
T ss_pred             EEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcccHHHHH
Confidence            677765  5899999987666 544 4456678899988873 33  46799999877655443

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=2.3e-47  Score=392.60  Aligned_cols=403  Identities=20%  Similarity=0.307  Sum_probs=307.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      ++||+|||||+||++||..|++.+. ..+|+|||+++..+|.++.++. ++........++           .....+++
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~l-----------~~~~~~~~  102 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDE-NANVVTLEKGEIYSYAQCGLPY-VISGAIASTEKL-----------IARNVKTF  102 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEECSSSCCSBCGGGHHH-HHTTSSSCGGGG-----------BSSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCCCCCCcch-hhcCCcCCHHHh-----------hhcCHHHH
Confidence            4699999999999999999999732 3489999999887766543321 111111111111           23445666


Q ss_pred             H-HcCcEEEeCCcEEEEecCCCEEEECC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 010917          140 K-EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  213 (497)
Q Consensus       140 ~-~~~v~~~~~~~v~~i~~~~~~v~~~~---g~--~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  213 (497)
                      . +.+++++.+++|+.++.+.+.+.+.+   |+  ++.||+||+|||+.|. .|.++|.+.++++++++..+...+.+.+
T Consensus       103 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~  181 (480)
T 3cgb_A          103 RDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTL  181 (480)
T ss_dssp             HHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCBTTTSBTEECCSSHHHHHHHHHHH
T ss_pred             HhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc-CCCCCCccCCCEEEeCCHHHHHHHHHHh
Confidence            4 45999999999999999888877753   65  7999999999999987 4566776667888888888887776665


Q ss_pred             c--cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCc
Q 010917          214 E--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  291 (497)
Q Consensus       214 ~--~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~  291 (497)
                      .  .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.||+++++++|++++.+  +.
T Consensus       182 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~  258 (480)
T 3cgb_A          182 ETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN--ER  258 (480)
T ss_dssp             HSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SB
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--Cc
Confidence            5  789999999999999999999999999999999998887 479999999999999999999999999999853  44


Q ss_pred             EEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHH
Q 010917          292 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  370 (497)
Q Consensus       292 v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~  370 (497)
                      +..+.++ +.++++|.||+|+|++|+.+++++++++.+ +|+|.||++++|+.|+|||+|||+..+....|....+.++.
T Consensus       259 v~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~  337 (480)
T 3cgb_A          259 VEAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGT  337 (480)
T ss_dssp             EEEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHH
T ss_pred             EEEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHH
Confidence            5456664 457999999999999999999999998875 57899999999999999999999987665545444456788


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC-CCCceeeeccccCCCCcceeeEEeecCCCc-------E---EEEccC--------CC
Q 010917          371 HARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T---IEIGNF--------DP  431 (497)
Q Consensus       371 ~A~~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~---~~~~~~--------~~  431 (497)
                      .|..||+.+|.+|++. ...|. ..+++|+.+++..       +..+|....+       +   ......        ..
T Consensus       338 ~A~~qg~~aa~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  409 (480)
T 3cgb_A          338 TANKQGRLAGLNMLDK-RRAFKGTLGTGIIKFMNLT-------LARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKP  409 (480)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCE
T ss_pred             HHHHHHHHHHHHhcCC-CccCCCccceeEEEECCcE-------EEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCce
Confidence            9999999999999964 34443 3456778777653       6677765321       1   111110        12


Q ss_pred             cEEEEEEE--CCEEEEEEeecCC-hHH-hhHHHHHHhCCCCCC-hhh--hcCCCcHHHHHHHHH
Q 010917          432 KIATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVD-KAK--LQQASSVEEALEIAR  488 (497)
Q Consensus       432 ~~~~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~  488 (497)
                      .+.+++++  +|+|+|+++++.. +.+ +..+..+++.+.+++ ...  +..|||++|++..+.
T Consensus       410 ~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~  473 (480)
T 3cgb_A          410 LYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVWDPIQ  473 (480)
T ss_dssp             EEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCHHH
T ss_pred             EEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCchhHHH
Confidence            36677774  5999999987666 555 456677889998887 343  357899998765543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=1.1e-46  Score=377.22  Aligned_cols=367  Identities=20%  Similarity=0.273  Sum_probs=289.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCC-CCHhH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER-QTPEW  138 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  138 (497)
                      ++||+|||||+||++||..|++.|+ +.+|+|+|+++...|.++.++..+..  .....++           .. ....+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~--~~~~~~~-----------~~~~~~~~   69 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSK--NKDADGL-----------AMAEPGAM   69 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTT--TCCHHHH-----------EEECHHHH
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhC--CCCHHHh-----------hccCHHHH
Confidence            5799999999999999999999996 56899999998777777665542211  1111111           11 23455


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCe
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  218 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  218 (497)
                      +++.+++++.+++|+.++.+.+++.+++ ..+.||+||+|||+.|. .|.++|.+.+++++.+++.+...+...+..+++
T Consensus        70 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  147 (384)
T 2v3a_A           70 AEQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPI-RVPVEGDAQDALYPINDLEDYARFRQAAAGKRR  147 (384)
T ss_dssp             HHHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEEC-CCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCE
T ss_pred             HHhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcC-CCCCCCcCcCCEEEECCHHHHHHHHHhhccCCe
Confidence            6788999999889999998888888865 46999999999999987 455677666788999999888888777777999


Q ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 010917          219 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  298 (497)
Q Consensus       219 vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~  298 (497)
                      ++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||+++++++|++++..+ +. ..+.+.
T Consensus       148 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~  225 (384)
T 2v3a_A          148 VLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG-EG-LEAHLS  225 (384)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEET-TE-EEEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC-CE-EEEEEC
Confidence            9999999999999999999999999999999998876799999999999999999999999999998643 32 367888


Q ss_pred             CCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917          299 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  378 (497)
Q Consensus       299 ~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  378 (497)
                      +|+++++|.||+|+|.+|+++++++++++.++| |.||++++|+.|+|||+|||+..+...      ..++..|..||+.
T Consensus       226 ~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~------~~~~~~a~~~g~~  298 (384)
T 2v3a_A          226 DGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGLN------LLYVMPLMACARA  298 (384)
T ss_dssp             TSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTBC------CCSHHHHHHHHHH
T ss_pred             CCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCCC------cchHHHHHHHHHH
Confidence            999999999999999999998999999988765 999999999999999999999754321      2367789999999


Q ss_pred             HHHHHhcCCCCCC--CCCCceeeeccccCCCCcceeeEEeecCCC---cEEEEccCCCcEEEEEEE-CCEEEEEEeecCC
Q 010917          379 CIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWID-SGKLKGVLVESGS  452 (497)
Q Consensus       379 ~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~  452 (497)
                      +|+||++.. .++  ..+|+.+   |.. +    ..++.+|....   .....++ ...+.+++++ +|+|+|+++++..
T Consensus       299 ~a~~i~g~~-~~~~~~~~p~~~---~~~-~----~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~~i~G~~~~g~~  368 (384)
T 2v3a_A          299 LAQTLAGNP-SQVAYGPMPVTV---KTP-A----CPLVVSPPPRGMDGQWLVEGS-GTDLKVLCRDTAGRVIGYALTGAA  368 (384)
T ss_dssp             HHHHHTTCC-CCCCCCCCCEEE---CCT-T----SCEEEECCCTTCCCEEEEEEE-TTEEEEEEECTTSCEEEEEEEGGG
T ss_pred             HHHHhcCCC-ccCCCCCcceEE---EEC-C----eeEEEecCCCCCCceEEEEec-CCcEEEEEEccCCEEEEEEEECcc
Confidence            999999743 444  4566632   111 1    12566665432   2233333 3457788775 7999999987777


Q ss_pred             hHHhhHHHH
Q 010917          453 PEEFQLLPT  461 (497)
Q Consensus       453 ~~~~~~~~~  461 (497)
                      +.++..+.+
T Consensus       369 a~e~~~~~~  377 (384)
T 2v3a_A          369 VNEKLALNK  377 (384)
T ss_dssp             GGGHHHHHT
T ss_pred             hHHHHHHHH
Confidence            777554443

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=1.5e-46  Score=395.30  Aligned_cols=386  Identities=19%  Similarity=0.343  Sum_probs=301.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  140 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (497)
                      +||+|||||+||++||..|++.+. ..+|+|||+++..+|.++.++. ++.........+           .....+++.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~-----------~~~~~~~~~   68 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPY-HISGEIAQRSAL-----------VLQTPESFK   68 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHH-HHTSSSCCGGGG-----------BCCCHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchH-HhcCCcCChHHh-----------hccCHHHHH
Confidence            699999999999999999999954 4599999999998887654442 221111111110           123344454


Q ss_pred             -HcCcEEEeCCcEEEEecCCCEEEECC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh-
Q 010917          141 -EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-  213 (497)
Q Consensus       141 -~~~v~~~~~~~v~~i~~~~~~v~~~~---g~--~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~-  213 (497)
                       +.+++++++++|+.++++.+.+.+.+   +.  ++.||+||||||+.|. .|.++|.+.+++++.++..+.+.+.+.+ 
T Consensus        69 ~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~ipG~~~~~v~~~~~~~~~~~l~~~~~  147 (565)
T 3ntd_A           69 ARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPI-VPPIPGVDNPLTHSLRNIPDMDRILQTIQ  147 (565)
T ss_dssp             HHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred             HhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHh
Confidence             58999999999999999998887753   43  7899999999999887 4667887778888888888887776543 


Q ss_pred             -ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC-----
Q 010917          214 -EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-----  287 (497)
Q Consensus       214 -~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-----  287 (497)
                       ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++...+.+.+++.||++++++.+++++..     
T Consensus       148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~  226 (565)
T 3ntd_A          148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV  226 (565)
T ss_dssp             HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence             3578999999999999999999999999999999999988 589999999999999999999999999999862     


Q ss_pred             -------------CCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEecccc
Q 010917          288 -------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  353 (497)
Q Consensus       288 -------------~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~  353 (497)
                                   +++.+ .+.+.+|+++++|.||+|+|++|++++++.+|++.+ +|+|.||++++|+.|+|||+|||+
T Consensus       227 ~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~  305 (565)
T 3ntd_A          227 ASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV  305 (565)
T ss_dssp             CCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred             cccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence                         23443 467788999999999999999999999998898875 688999999999999999999999


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCC-CceeeeccccCCCCcceeeEEeecCCCc---------E
Q 010917          354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T  423 (497)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~  423 (497)
                      ..+....|......++..|..||+.+|.||++.. ..|... |+.|+.+|+..       +..+|....+         .
T Consensus       306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~  377 (565)
T 3ntd_A          306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-ERYQGTQGTAICKVFDLA-------VGATGKNEKQLKQAGIAFEK  377 (565)
T ss_dssp             CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEE
T ss_pred             eeccccCCceeecccHHHHHHHHHHHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHcCCCeEE
Confidence            8777666666556688899999999999999754 446554 45566677643       6677765421         1


Q ss_pred             EEE---c--cC----CCcEEEEEEE--CCEEEEEEeecCCh-HH-hhHHHHHHhCCCCCC
Q 010917          424 IEI---G--NF----DPKIATFWID--SGKLKGVLVESGSP-EE-FQLLPTLARSQPFVD  470 (497)
Q Consensus       424 ~~~---~--~~----~~~~~~~~~~--~~~~~g~~~~~~~~-~~-~~~~~~~~~~~~~~~  470 (497)
                      ...   +  ..    ...+.|+.++  +++|+|+++++..+ .+ +..+..+++.+.+++
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~  437 (565)
T 3ntd_A          378 VYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVE  437 (565)
T ss_dssp             EEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHH
T ss_pred             EEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHH
Confidence            111   1  01    1236788774  58999999877776 55 445556678887765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=3.1e-45  Score=386.50  Aligned_cols=389  Identities=20%  Similarity=0.318  Sum_probs=299.0

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      .+++++|+|||||+||++||..|++.+. ..+|+|||+++..+|.++.++. ++.........+          ....+.
T Consensus        33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~~~~~~~lp~-~~~g~~~~~~~~----------~~~~~~  100 (588)
T 3ics_A           33 RWGSRKIVVVGGVAGGASVAARLRRLSE-EDEIIMVERGEYISFANCGLPY-YIGGVITERQKL----------LVQTVE  100 (588)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHH-HHTTSSCCGGGG----------BSSCHH
T ss_pred             cccCCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEECCCCccccCCCCch-hhcCcCCChHHh----------hccCHH
Confidence            4556899999999999999999999943 3499999999988877654432 111111111110          012344


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEEC---CCc--EEEeccEEeccCCCCCcCCCCCCC-CCCcEEEecCHHHHHHHH
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADALI  210 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~---~g~--~i~~d~lvlAtG~~~~~~~~~~g~-~~~gv~~~~~~~~~~~~~  210 (497)
                      .+.++.+++++++++|+.++.+.+.+.+.   ++.  .+.||+||+|||+.|. .|.++|. +.+++++.+++.+...+.
T Consensus       101 ~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~~v~~~~~~~~~~~~~  179 (588)
T 3ics_A          101 RMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPI-VPSIPGIEEAKALFTLRNVPDTDRIK  179 (588)
T ss_dssp             HHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTTCTTEEECSSHHHHHHHH
T ss_pred             HHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCC-CCCCCCcccCCCeEEeCCHHHHHHHH
Confidence            55568899999999999999999888774   455  6899999999999887 4566776 678899998888887776


Q ss_pred             Hhh--ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          211 SSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       211 ~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                      ..+  ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++.|++++..+
T Consensus       180 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~  258 (588)
T 3ics_A          180 AYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEENG  258 (588)
T ss_dssp             HHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGG
T ss_pred             HHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecCC
Confidence            554  36899999999999999999999999999999999999886 899999999999999999999999999998542


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccc
Q 010917          289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  367 (497)
Q Consensus       289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~  367 (497)
                       +   .+.+.+|+++++|.||+|+|++|++++++.+|++.+ +|+|.||++++|+.|+|||+|||+..+....|......
T Consensus       259 -~---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~  334 (588)
T 3ics_A          259 -A---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIP  334 (588)
T ss_dssp             -T---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCC
T ss_pred             -C---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccc
Confidence             2   477889999999999999999999999999999875 68899999999999999999999987766556554556


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCCC-CCCCceeeeccccCCCCcceeeEEeecCCCc---------EEE---Ecc--C---
Q 010917          368 HVDHARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE---IGN--F---  429 (497)
Q Consensus       368 ~~~~A~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~---~~~--~---  429 (497)
                      .+..|..||+.+|.+|++.....| ..+|..+...++..       +..+|....+         ...   ...  .   
T Consensus       335 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~  407 (588)
T 3ics_A          335 LAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLT-------VATTGLNEKILKRLNIPYEVVHVQANSHAGYYPN  407 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTT
T ss_pred             cHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeE-------EEEecCCHHHHHHcCCCeEEEEEecCCccccCCC
Confidence            788899999999999997233334 34566555445432       5566654321         111   111  0   


Q ss_pred             -CCcEEEEEEE--CCEEEEEEeecCC-hHH-hhHHHHHHhCCCCCC
Q 010917          430 -DPKIATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVD  470 (497)
Q Consensus       430 -~~~~~~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~  470 (497)
                       ...+.|+.++  +++|+|+++++.+ +.+ +..+..+++.+.+++
T Consensus       408 ~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~  453 (588)
T 3ics_A          408 ATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVL  453 (588)
T ss_dssp             CCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTT
T ss_pred             CceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHH
Confidence             1246777774  5899999986653 555 445566788888876

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=4.1e-43  Score=364.41  Aligned_cols=403  Identities=20%  Similarity=0.244  Sum_probs=289.0

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCCccccC-----------CCCCCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF-----------PLDKKPARLP  121 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~----~~~l~~~~l~-----------~~~~~~~~~~  121 (497)
                      ++.++||+|||||+||++||.+|++.|+   +|+|||+++...-.    .+.-++.++.           ........+.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~  116 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMT  116 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCT
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHH
Confidence            4456899999999999999999999987   89999998732100    0000000000           0000000000


Q ss_pred             C----CccccCCCCCCCCH---hHH-----HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCC
Q 010917          122 G----FHTCVGSGGERQTP---EWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK  189 (497)
Q Consensus       122 ~----~~~~~~~~~~~~~~---~~~-----~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~  189 (497)
                      .    ..... ........   .++     ++.++++++..++..++.  +++.+. +..+.||+||+|||+.|. .|.+
T Consensus       117 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~-~p~i  191 (523)
T 1mo9_A          117 EKVVGIKEVV-DLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPG-TLDV  191 (523)
T ss_dssp             TCCCCHHHHH-HHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECC-CCCS
T ss_pred             hhhhhHHHHH-HHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCC-CCCC
Confidence            0    00000 00000022   455     678999985568888875  567776 678999999999999987 4556


Q ss_pred             CCCCCCcEEEecCHHHHHHHH-HhhccC-CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHH
Q 010917          190 IGGYLPGVHYIRDVADADALI-SSLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  267 (497)
Q Consensus       190 ~g~~~~gv~~~~~~~~~~~~~-~~~~~~-~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~  267 (497)
                      +|.+.+++++.      +.+. .....+ ++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       192 ~G~~~~~v~~~------~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~  264 (523)
T 1mo9_A          192 PGVNAKGVFDH------ATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDR  264 (523)
T ss_dssp             TTTTSBTEEEH------HHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHH
T ss_pred             CCcccCcEeeH------HHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHH
Confidence            66555556543      2333 222334 99999999999999999999999999999999999885 799999999999


Q ss_pred             HHHCCcEEEcCCeEEEEEeCCCCcE--EEEEeCCCc-EEEcCEEEEeccCcCCCc-chhhcCCccc-CCCEEecCCCCCC
Q 010917          268 YQQNGVKFVKGASIKNLEAGSDGRV--AAVKLEDGS-TIDADTIVIGIGAKPTVS-PFERVGLNSS-VGGIQVDGQFRTR  342 (497)
Q Consensus       268 l~~~GV~i~~~~~v~~i~~~~~~~v--~~v~~~~g~-~i~~D~vv~a~G~~p~~~-~~~~~gl~~~-~g~i~vd~~~~t~  342 (497)
                      +++.||+++++++|++++..+++++  ..+.+.+|+ ++++|.||+|+|++|+++ +++++|++.+ +|+|.||+++||+
T Consensus       265 l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~  344 (523)
T 1mo9_A          265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTS  344 (523)
T ss_dssp             HHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCS
T ss_pred             HHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccC
Confidence            9999999999999999986545543  357788887 899999999999999998 7999999875 6779999999999


Q ss_pred             CCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC-CCCCCCceeeeccccCCCCcceeeEEeecCCC
Q 010917          343 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  421 (497)
Q Consensus       343 ~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  421 (497)
                      .|+|||+|||+..+.          .+..|..||+.+|.||++.... .|..+|+++.....         +..+|....
T Consensus       345 ~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~  405 (523)
T 1mo9_A          345 VPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYE---------VSFLGMGEE  405 (523)
T ss_dssp             STTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSE---------EEEEECCHH
T ss_pred             CCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCc---------eEEEeCCHH
Confidence            999999999997542          4556999999999999974322 35667876542221         445554321


Q ss_pred             -------cEEE-E---c------------------------cCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHH
Q 010917          422 -------ETIE-I---G------------------------NFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLA  463 (497)
Q Consensus       422 -------~~~~-~---~------------------------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~  463 (497)
                             ++.. .   .                        .....+.+++++  +++|+|+++++..+.++ ..+..+|
T Consensus       406 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai  485 (523)
T 1mo9_A          406 EARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLI  485 (523)
T ss_dssp             HHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence                   1111 0   0                        111347788775  58999999877766654 5666778


Q ss_pred             hCCCCCC-h-hh--hcCCCcHHHHHHHHHccCCc
Q 010917          464 RSQPFVD-K-AK--LQQASSVEEALEIARAALPV  493 (497)
Q Consensus       464 ~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~  493 (497)
                      +.+.+++ . ..  ++.|||++|+++.+++.+..
T Consensus       486 ~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~~~~~  519 (523)
T 1mo9_A          486 KQGLTVDELGDMDELFLNPTHFIQLSRLRAGSKN  519 (523)
T ss_dssp             HTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTCSS
T ss_pred             HCCCCHHHHHhCCcceECCCHHHHHHHHHHhhHh
Confidence            9998886 2 33  68899999999999887543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=3.1e-43  Score=361.17  Aligned_cols=401  Identities=16%  Similarity=0.216  Sum_probs=279.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-Ccccc-----------------CCC-CCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYL-----------------FPL-DKKP  117 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~---~~l-~~~~l-----------------~~~-~~~~  117 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||+++......   ... ++.++                 .+. ....
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~   78 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGM---KTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT   78 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            4799999999999999999999988   899999986432100   000 00000                 000 0000


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 010917          118 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG  192 (497)
Q Consensus       118 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g~  192 (497)
                      .++..+....   ...+......++++.+++++.++. ..++.....+.+.+|  ..+.||+||+|||+.|.. |.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~-~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~-p~~~g~  156 (468)
T 2qae_A           79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEG-SFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE-LPFLPF  156 (468)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE-EEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-BTTBCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCC-CCCCCC
Confidence            0000000000   000000113456677999998754 457765556777777  689999999999998874 444554


Q ss_pred             CCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHH-HHC
Q 010917          193 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQN  271 (497)
Q Consensus       193 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l-~~~  271 (497)
                      +.+++.+      .+.+......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+ ++.
T Consensus       157 ~~~~v~t------~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~~  229 (468)
T 2qae_A          157 DEKVVLS------STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAKNE  229 (468)
T ss_dssp             CSSSEEC------HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHT
T ss_pred             CcCceec------hHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHHhhcC
Confidence            4444432      2333333346799999999999999999999999999999999999974 8999999999999 999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCC
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP  344 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~  344 (497)
                      ||+++++++|++++..+++ + .+.+.  +|  +++++|.||+|+|++|++++  +++++++.+ +|+|.||+++||+.|
T Consensus       230 gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~  307 (468)
T 2qae_A          230 KMKFMTSTKVVGGTNNGDS-V-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIP  307 (468)
T ss_dssp             CCEEECSCEEEEEEECSSS-E-EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSST
T ss_pred             CcEEEeCCEEEEEEEcCCe-E-EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCC
Confidence            9999999999999865333 2 35554  66  67999999999999999988  788898876 577999999999999


Q ss_pred             cEEEeccccc-cCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCC-
Q 010917          345 GIFAIGDVAA-FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-  421 (497)
Q Consensus       345 ~iya~GD~~~-~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-  421 (497)
                      +|||+|||+. .+.          .+..|..||+.+|.+|++... ..|..+|++  ..++.       .+..+|.... 
T Consensus       308 ~IyA~GD~~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~e~~  368 (468)
T 2qae_A          308 DVYAIGDVVDKGPM----------LAHKAEDEGVACAEILAGKPGHVNYGVIPAV--IYTMP-------EVASVGKSEDE  368 (468)
T ss_dssp             TEEECGGGBSSSCS----------CHHHHHHHHHHHHHHHTTCCCCCCTTSCCEE--ECSSS-------EEEEEECCHHH
T ss_pred             CEEEeeccCCCCCc----------cHhHHHHHHHHHHHHHcCCCccCCCCCCCEE--EECCC-------ceEEEeCCHHH
Confidence            9999999998 332          456799999999999997431 234455643  22222       1555665422 


Q ss_pred             ------cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCC--hhhhcCCC
Q 010917          422 ------ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVD--KAKLQQAS  478 (497)
Q Consensus       422 ------~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~  478 (497)
                            .+...            ......|.+++++  +|+|+|+++++..+.++ ..+..+++.+.+++  ...++.||
T Consensus       369 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~P  448 (468)
T 2qae_A          369 LKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHP  448 (468)
T ss_dssp             HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                  11110            0112458888886  69999999877776664 45566789998876  23358899


Q ss_pred             cHHHHHHHHHccCCc
Q 010917          479 SVEEALEIARAALPV  493 (497)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (497)
                      |++|+++.|++++..
T Consensus       449 t~~e~~~~~~~~~~~  463 (468)
T 2qae_A          449 TMSEALKEACMALFA  463 (468)
T ss_dssp             CTHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999876543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=4.6e-43  Score=360.48  Aligned_cols=401  Identities=17%  Similarity=0.236  Sum_probs=281.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CC-Ccccc------------------CCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---AL-TKGYL------------------FPLDKKP  117 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l-~~~~l------------------~~~~~~~  117 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||+++.......   .. ++.++                  .+.....
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~   82 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGF---KTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVR   82 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCc
Confidence            4799999999999999999999987   8999999864321000   00 00000                  0000000


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC-C-cEEEeccEEeccCCCCCcCCCCCCC
Q 010917          118 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-G-KLLKYGSLIVATGCTASRFPEKIGG  192 (497)
Q Consensus       118 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-g-~~i~~d~lvlAtG~~~~~~~~~~g~  192 (497)
                      .++..+....   ..........++++.+++++.++ +..++.....+.+.+ + +++.||+||+|||+.|.. |.++|.
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~-p~i~g~  160 (474)
T 1zmd_A           83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP-FPGITI  160 (474)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC-CTTCCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC-CCCCCC
Confidence            0000000000   00000011345677899999874 455666555666666 4 579999999999999874 445554


Q ss_pred             CCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCC
Q 010917          193 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  272 (497)
Q Consensus       193 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~G  272 (497)
                      +..++.+      ++........+++++|||+|++|+|+|..|++.|.+|+++++.+.++++.+++++.+.+.+.+++.|
T Consensus       161 ~~~~v~t------~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G  234 (474)
T 1zmd_A          161 DEDTIVS------STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG  234 (474)
T ss_dssp             CSSSEEC------HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred             CcCcEEc------HHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence            3333432      2233332335799999999999999999999999999999999999884589999999999999999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEE-----eCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCC
Q 010917          273 VKFVKGASIKNLEAGSDGRVAAVK-----LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP  344 (497)
Q Consensus       273 V~i~~~~~v~~i~~~~~~~v~~v~-----~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~  344 (497)
                      |+++++++|++++..+++.+ .+.     ..+++++++|.||+|+|++|++++  +++++++.+ +|+|.||+++||+.|
T Consensus       235 v~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~  313 (474)
T 1zmd_A          235 FKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP  313 (474)
T ss_dssp             CEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSST
T ss_pred             CEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCC
Confidence            99999999999986543323 344     356678999999999999999987  788888876 577999999999999


Q ss_pred             cEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-
Q 010917          345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-  422 (497)
Q Consensus       345 ~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-  422 (497)
                      +|||+|||+..+.          .+..|..||+.+|.||++... ..|..+|++|  .++.       .+..+|....+ 
T Consensus       314 ~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~-------~~a~vG~~e~~a  374 (474)
T 1zmd_A          314 NIYAIGDVVAGPM----------LAHKAEDEGIICVEGMAGGAVHIDYNCVPSVI--YTHP-------EVAWVGKSEEQL  374 (474)
T ss_dssp             TEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEE--CSSS-------EEEEEECCHHHH
T ss_pred             CEEEeeecCCCCc----------cHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEE--ECCC-------CeEEEeCCHHHH
Confidence            9999999998542          456799999999999997432 2355677654  2221       15556654321 


Q ss_pred             ------EEE-E-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHH-hhHHHHHHhCCCCCC--hhhhcCCCc
Q 010917          423 ------TIE-I-----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD--KAKLQQASS  479 (497)
Q Consensus       423 ------~~~-~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~  479 (497)
                            +.. .           ......|.+++++  +|+|+|+++++..+.+ +..+..+++.+.+++  ...++.|||
T Consensus       375 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt  454 (474)
T 1zmd_A          375 KEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPT  454 (474)
T ss_dssp             HHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTC
T ss_pred             HhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCC
Confidence                  111 0           0112458888887  6899999987776655 456677789998886  234688999


Q ss_pred             HHHHHHHHHccC
Q 010917          480 VEEALEIARAAL  491 (497)
Q Consensus       480 ~~~~~~~~~~~~  491 (497)
                      ++|++..|++++
T Consensus       455 ~~e~~~~~~~~~  466 (474)
T 1zmd_A          455 LSEAFREANLAA  466 (474)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=6.1e-43  Score=358.92  Aligned_cols=397  Identities=17%  Similarity=0.227  Sum_probs=281.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------------------C--CCCCCCccccCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--------------------Y--ERPALTKGYLFPLDKK  116 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--------------------~--~~~~l~~~~l~~~~~~  116 (497)
                      .++||+|||||+||++||..|++.|+   +|+|||++..-.                    +  ...+...+ + .....
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g-~-~~~~~   77 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGA---QVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGG-I-AATVP   77 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTT-S-CCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCC-c-cCCCC
Confidence            45899999999999999999999987   899999983100                    0  00000000 0 00000


Q ss_pred             CCCCCCCccccCC--CCC--CCCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCC
Q 010917          117 PARLPGFHTCVGS--GGE--RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK  189 (497)
Q Consensus       117 ~~~~~~~~~~~~~--~~~--~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~  189 (497)
                      ..++..+......  ...  ....+++++. +++++.+ ++..++.....+.+.+|  +.+.||+||+|||+.|. .|.+
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i  155 (467)
T 1zk7_A           78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPA-VPPI  155 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEEC-CCCC
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCC-CCCC
Confidence            0000000000000  000  0123445566 9999886 57788876667777777  67999999999999987 4555


Q ss_pred             CCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHH
Q 010917          190 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  269 (497)
Q Consensus       190 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~  269 (497)
                      +|.+..++.      +.+.+.+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++  +++++.+.+.+.++
T Consensus       156 ~G~~~~~~~------~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~  227 (467)
T 1zk7_A          156 PGLKESPYW------TSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFR  227 (467)
T ss_dssp             TTTTTSCCB------CHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHH
T ss_pred             CCCCcCcee------cHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHH
Confidence            664332221      2334444445689999999999999999999999999999999999987  79999999999999


Q ss_pred             HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcE
Q 010917          270 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI  346 (497)
Q Consensus       270 ~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~i  346 (497)
                      +.||+++++++|++++.+ ++ ...+.++ +.++++|.||+|+|.+|++++  ++.++++.+ +|+|.||++++|+.|+|
T Consensus       228 ~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~i  304 (467)
T 1zk7_A          228 AEGIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNI  304 (467)
T ss_dssp             HTTCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred             hCCCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCE
Confidence            999999999999999854 22 3346665 457999999999999999875  578888876 56799999999999999


Q ss_pred             EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCC----
Q 010917          347 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----  421 (497)
Q Consensus       347 ya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~----  421 (497)
                      ||+|||+..+.          .+..|..||+.+|.||++... ..+..+|++  ..++.       .+.++|....    
T Consensus       305 ya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~~~~a~~  365 (467)
T 1zk7_A          305 YAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPAV--VFTDP-------QVATVGYSEAEAHH  365 (467)
T ss_dssp             EECSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCEEE--ECSSS-------EEEEEECCHHHHHH
T ss_pred             EEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCCEE--EecCC-------ceEEEecCHHHHHh
Confidence            99999998653          456799999999999997532 234555643  22221       1555665432    


Q ss_pred             ---cEEE-Ec-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCC--hhhhcCCCcHH
Q 010917          422 ---ETIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVD--KAKLQQASSVE  481 (497)
Q Consensus       422 ---~~~~-~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~  481 (497)
                         ++.. .-           .....+.+++++  +|+|+|+++++..+.++ ..+..+++++.+++  ....+.|||++
T Consensus       366 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~  445 (467)
T 1zk7_A          366 DGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV  445 (467)
T ss_dssp             TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTT
T ss_pred             cCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence               1111 10           112458888886  69999999877666554 45677889998876  23458899999


Q ss_pred             HHHHHHHccCC
Q 010917          482 EALEIARAALP  492 (497)
Q Consensus       482 ~~~~~~~~~~~  492 (497)
                      |+++.|++++.
T Consensus       446 e~~~~~~~~~~  456 (467)
T 1zk7_A          446 EGLKLAAQTFN  456 (467)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.7e-43  Score=363.19  Aligned_cols=400  Identities=19%  Similarity=0.219  Sum_probs=284.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCC---CCCC-Cccc----------------cCC--CC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYE---RPAL-TKGY----------------LFP--LD  114 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~---~~~l-~~~~----------------l~~--~~  114 (497)
                      ++||+|||||+||++||..|++.   |+   +|+|||+++ ....   .... ++.+                ..+  ..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~---~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~   77 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETT---QVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFD   77 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTE---EEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC----
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcC---EEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccC
Confidence            47999999999999999999999   87   899999986 2100   0000 0000                000  00


Q ss_pred             CCCCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEec------CCCEEEECCCc--EEEeccEEeccCCCC
Q 010917          115 KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDI------EKQTLITNSGK--LLKYGSLIVATGCTA  183 (497)
Q Consensus       115 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~------~~~~v~~~~g~--~i~~d~lvlAtG~~~  183 (497)
                      ....++.......   .........+++++.+++++.+ ++..++.      ....+.+++++  .+.||+||+|||+.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p  156 (499)
T 1xdi_A           78 DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP  156 (499)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence            0000000000000   0000001245567789999987 4777776      22345556675  799999999999998


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHH
Q 010917          184 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  263 (497)
Q Consensus       184 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~  263 (497)
                      .. |.++|.+..++.+..+..      .....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.
T Consensus       157 ~~-p~i~g~~~~~v~~~~~~~------~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~  228 (499)
T 1xdi_A          157 RI-LPSAQPDGERILTWRQLY------DLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALV  228 (499)
T ss_dssp             CC-CGGGCCCSSSEEEGGGGG------GCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHH
T ss_pred             CC-CCCCCCCcCcEEehhHhh------hhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHH
Confidence            74 555665555565543222      22235789999999999999999999999999999999999986 89999999


Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCC
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR  340 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~  340 (497)
                      +.+.+++.||+++++++|++++.++ +.+ .+.+.+|+++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++|
T Consensus       229 l~~~l~~~GV~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~  306 (499)
T 1xdi_A          229 LEESFAERGVRLFKNARAASVTRTG-AGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR  306 (499)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSB
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeC-CEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcc
Confidence            9999999999999999999998653 333 567788889999999999999999988  788898876 47799999999


Q ss_pred             CCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeec
Q 010917          341 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGD  418 (497)
Q Consensus       341 t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~  418 (497)
                      |+.|+|||+|||+..+.          .+..|..||+.+|.+|++...  ..|..+|+++  .++.       .+..+|.
T Consensus       307 t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~~-------~~a~vG~  367 (499)
T 1xdi_A          307 TLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGVSPIRLRTVAATV--FTRP-------EIAAVGV  367 (499)
T ss_dssp             CSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEE--CSSS-------EEEEEES
T ss_pred             cCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEE--EecC-------CceEeCC
Confidence            99999999999998542          455699999999999997522  2345566643  2222       2566775


Q ss_pred             CCCc-------EEE-E-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCC--hhhh
Q 010917          419 NVGE-------TIE-I-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVD--KAKL  474 (497)
Q Consensus       419 ~~~~-------~~~-~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~  474 (497)
                      ...+       +.. .           .+....|.+++++  +|+|+|+++++..+.++ ..+..+|+.+.+++  ...+
T Consensus       368 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~  447 (499)
T 1xdi_A          368 PQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTL  447 (499)
T ss_dssp             CHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSB
T ss_pred             CHHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhccc
Confidence            5321       111 1           0112458888887  48999999877776664 45567788998886  2346


Q ss_pred             cCCCcHHHHHHHHHccCCc
Q 010917          475 QQASSVEEALEIARAALPV  493 (497)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~  493 (497)
                      +.|||++|+++.|++++..
T Consensus       448 ~~~Pt~~e~~~~~~~~~~~  466 (499)
T 1xdi_A          448 AVYPSLSGSITEAARRLMA  466 (499)
T ss_dssp             CCSSSTHHHHHHHHHHHCC
T ss_pred             ccCCCchHHHHHHHHHHhc
Confidence            8899999999999876543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-42  Score=357.05  Aligned_cols=398  Identities=19%  Similarity=0.249  Sum_probs=277.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC--------------CCccccCCC-----C
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA--------------LTKGYLFPL-----D  114 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~~--------------l~~~~l~~~-----~  114 (497)
                      .++||+|||||+||++||..|++.|+   +|+|||++....-  ..   |.              ....+....     .
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   86 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGA---KTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK   86 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCC---cEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence            35799999999999999999999987   8999999742100  00   00              000000000     0


Q ss_pred             -CCCCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCC-
Q 010917          115 -KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-  187 (497)
Q Consensus       115 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~-  187 (497)
                       ....++..+....   .......+...+++.+++++.+ ++..++.....+.+.+|+  .+.||+||+|||+.|.. | 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~-p~  164 (479)
T 2hqm_A           87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIF-PE  164 (479)
T ss_dssp             GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECC-CT
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC-CC
Confidence             0000000000000   0000000123455679999986 577676655567667776  79999999999998874 4 


Q ss_pred             CCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHH
Q 010917          188 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  267 (497)
Q Consensus       188 ~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~  267 (497)
                      .++|.+     ..   .+++.+......+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.
T Consensus       165 ~i~g~~-----~~---~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~  235 (479)
T 2hqm_A          165 NIPGFE-----LG---TDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNTITDH  235 (479)
T ss_dssp             TSTTGG-----GS---BCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHH
T ss_pred             CCCCcc-----cc---cchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHHHHHH
Confidence            444421     11   123444444456899999999999999999999999999999999998875 899999999999


Q ss_pred             HHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeccCcCCCcc-hhhcCCccc-CCCEEecCCCCCCCC
Q 010917          268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP-FERVGLNSS-VGGIQVDGQFRTRMP  344 (497)
Q Consensus       268 l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~~p~~~~-~~~~gl~~~-~g~i~vd~~~~t~~~  344 (497)
                      +++.||+++++++|++++..+++.+..+.+++| +++++|.||+|+|++|++.+ ++.+|++.+ +|+|.||++++|+.|
T Consensus       236 l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~  315 (479)
T 2hqm_A          236 YVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVP  315 (479)
T ss_dssp             HHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCSST
T ss_pred             HHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccCCC
Confidence            999999999999999998654443456788899 78999999999999999977 788899876 578999999999999


Q ss_pred             cEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---C--CCCCCCCceeeeccccCCCCcceeeEEeecC
Q 010917          345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN  419 (497)
Q Consensus       345 ~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~---~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~  419 (497)
                      +|||+|||+..+.          .+..|..||+.+|.||++..   .  .+|..+|+.   .|..+      .+..+|..
T Consensus       316 ~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~---~~~~~------~~~~vGl~  376 (479)
T 2hqm_A          316 NIYSLGDVVGKVE----------LTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSV---IFSHP------EAGSIGIS  376 (479)
T ss_dssp             TEEECGGGTTSSC----------CHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEE---ECCSS------CEEEEECC
T ss_pred             CEEEEEecCCCcc----------cHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeE---EECCC------CeEEEeCC
Confidence            9999999986432          56679999999999999643   2  244556642   22211      14445543


Q ss_pred             CCc---------EEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC--hhh
Q 010917          420 VGE---------TIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAK  473 (497)
Q Consensus       420 ~~~---------~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~  473 (497)
                      ..+         +...            ..-...+.|++++  +++|+|+++++..+.++... ..+++.+.+++  ...
T Consensus       377 e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~  456 (479)
T 2hqm_A          377 EKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNC  456 (479)
T ss_dssp             HHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             HHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence            210         1110            0112347788775  58999999877777775544 45678888776  234


Q ss_pred             hcCCCcHHHHHHHHHc
Q 010917          474 LQQASSVEEALEIARA  489 (497)
Q Consensus       474 ~~~~~~~~~~~~~~~~  489 (497)
                      ++.|||++|+++.|+.
T Consensus       457 ~~~hPt~~e~~~~~~~  472 (479)
T 2hqm_A          457 VAIHPTSAEELVTMRG  472 (479)
T ss_dssp             CCCSSCSGGGGGSCC-
T ss_pred             cCCCCChHHHHHHHHH
Confidence            6899999999987664

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=1.4e-43  Score=364.85  Aligned_cols=401  Identities=18%  Similarity=0.269  Sum_probs=276.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-Ccccc------------CCC------CCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYL------------FPL------DKKP  117 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~---~~l-~~~~l------------~~~------~~~~  117 (497)
                      ++||+||||||||++||..|++.|+   +|+|||+++......   ... ++.++            ...      ....
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~   81 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIK   81 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            4799999999999999999999987   899999965432000   000 00000            000      0000


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cE------EEeccEEeccCCCCCcC
Q 010917          118 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KL------LKYGSLIVATGCTASRF  186 (497)
Q Consensus       118 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~------i~~d~lvlAtG~~~~~~  186 (497)
                      .++..+....   .......+..++++.+++++.++.+. .+....++.+.+|  +.      +.||+||+|||+.|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~  160 (478)
T 1v59_A           82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF  160 (478)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCC
Confidence            0000000000   00000002235667899999986554 3333334555566  56      99999999999987533


Q ss_pred             CCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHH
Q 010917          187 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  266 (497)
Q Consensus       187 ~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~  266 (497)
                         ++....+ ..+.+   ++........+++++|||+|++|+|+|..|++.|.+||++++.+++++ .+++++.+.+.+
T Consensus       161 ---~g~~~~~-~~v~~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~  232 (478)
T 1v59_A          161 ---PGIEIDE-EKIVS---STGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQK  232 (478)
T ss_dssp             ---TTCCCCS-SSEEC---HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHH
T ss_pred             ---CCCCCCC-ceEEc---HHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHHH
Confidence               3333333 11222   333333223579999999999999999999999999999999999998 589999999999


Q ss_pred             HHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----CCcEEEcCEEEEeccCcCCCc--chhhcCCccc-CCCEEecCC
Q 010917          267 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DGSTIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQ  338 (497)
Q Consensus       267 ~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----~g~~i~~D~vv~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~  338 (497)
                      .+++.||+++++++|++++..+++....+.+.     +++++++|.||+|+|++|+++  ++++++++.+ +|+|.||++
T Consensus       233 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~  312 (478)
T 1v59_A          233 FLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQ  312 (478)
T ss_dssp             HHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTT
T ss_pred             HHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcC
Confidence            99999999999999999985212333345554     456899999999999999998  7889999876 677999999


Q ss_pred             CCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEee
Q 010917          339 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFG  417 (497)
Q Consensus       339 ~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g  417 (497)
                      +||+.|+|||+|||+..+.          .+..|..||+.+|.+|++... .+|..+|++|.....         +..+|
T Consensus       313 ~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~---------~a~vG  373 (478)
T 1v59_A          313 FNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPE---------VAWVG  373 (478)
T ss_dssp             SBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSE---------EEEEE
T ss_pred             CccCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCc---------EEEEE
Confidence            9999999999999998542          455799999999999997432 356778877654332         34455


Q ss_pred             cCCC-------cEEE-------------EccCCCcEEEEEEE--CCEEEEEEeecCChHH-hhHHHHHHhCCCCCC-hhh
Q 010917          418 DNVG-------ETIE-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD-KAK  473 (497)
Q Consensus       418 ~~~~-------~~~~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~  473 (497)
                      ....       ++..             .++ ...+.+++++  +|+|+|+++++..+.+ +..+..+++.+.+++ ...
T Consensus       374 ~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~  452 (478)
T 1v59_A          374 KTEEQLKEAGIDYKIGKFPFAANSRAKTNQD-TEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVAR  452 (478)
T ss_dssp             CCHHHHHHTTCCEEEEEEEGGGCHHHHHTTC-CCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred             CCHHHHHHcCCCEEEEEEecccchhhhhcCC-CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence            4321       1111             111 2346677665  6999999987666555 556677889998885 333


Q ss_pred             -hcCCCcHHHHHHHHHccCC
Q 010917          474 -LQQASSVEEALEIARAALP  492 (497)
Q Consensus       474 -~~~~~~~~~~~~~~~~~~~  492 (497)
                       .+.||+++|++..++.++.
T Consensus       453 ~~~~~Pt~~e~~~~~~~~~~  472 (478)
T 1v59_A          453 VCHAHPTLSEAFKEANMAAY  472 (478)
T ss_dssp             SCCCTTCTTHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHh
Confidence             5889999999999986543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=6.9e-43  Score=359.06  Aligned_cols=402  Identities=19%  Similarity=0.287  Sum_probs=279.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CC-Ccccc-----------------CCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---AL-TKGYL-----------------FPLDKK  116 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l-~~~~l-----------------~~~~~~  116 (497)
                      +.++||+|||||+||++||..|++.|+   +|+|||+++.......   .. ++.++                 ......
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~   80 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV   80 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            346899999999999999999999988   8999999864321100   00 00000                 000000


Q ss_pred             CCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCCCC
Q 010917          117 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG  191 (497)
Q Consensus       117 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g  191 (497)
                      ..++..+....   .......+..++++.+++++.++.+. ++.....+.+++|  ..+.||+||+|||+.|.. |.++|
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~-p~~~g  158 (470)
T 1dxl_A           81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKS-LPGVT  158 (470)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECC-BTTBC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCC
Confidence            00000000000   00000001345566799999986554 6655445555566  679999999999998874 44455


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                      .+.+++.+      ..........+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus       159 ~~~~~v~~------~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~  231 (470)
T 1dxl_A          159 IDEKKIVS------STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQ  231 (470)
T ss_dssp             CCSSSEEC------HHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHS
T ss_pred             CCcccEEe------HHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHHHHHHHc
Confidence            43334432      2233332335799999999999999999999999999999999999874 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCC
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM  343 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~  343 (497)
                      ||+++++++|.+++.++++ + .+.+.   +|  +++++|.||+|+|++||+++  +++++++.+ +|+|.||+++||+.
T Consensus       232 gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~  309 (470)
T 1dxl_A          232 GMKFKLKTKVVGVDTSGDG-V-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNV  309 (470)
T ss_dssp             SCCEECSEEEEEEECSSSS-E-EEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSS
T ss_pred             CCEEEeCCEEEEEEEcCCe-E-EEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCC
Confidence            9999999999999864333 2 34443   44  68999999999999999988  788888876 57799999999999


Q ss_pred             CcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccccCCCCcceeeEEeecCCC
Q 010917          344 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  421 (497)
Q Consensus       344 ~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  421 (497)
                      |+|||+|||+..+.          .+..|..||+.+|.+|++. ..+  |..+|+  ...++..       +..+|....
T Consensus       310 ~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~  369 (470)
T 1dxl_A          310 SGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK-VGHVDYDKVPG--VVYTNPE-------VASVGKTEE  369 (470)
T ss_dssp             TTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS-CCCCCTTSCCE--EECSSSE-------EEEEECCHH
T ss_pred             CCEEEEeccCCCCc----------cHHHHHHHHHHHHHHHcCC-CcCCCCCCCCE--EEECCCc-------eEEEcCCHH
Confidence            99999999997532          4556999999999999964 333  444554  3323221       455665321


Q ss_pred             -------cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCC-h-hhhcCC
Q 010917          422 -------ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVD-K-AKLQQA  477 (497)
Q Consensus       422 -------~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~  477 (497)
                             .+...            ......|.+++++  +|+|+|+++++..+.++ ..+..+++.+.+++ . ..++.|
T Consensus       370 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~  449 (470)
T 1dxl_A          370 QVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAH  449 (470)
T ss_dssp             HHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCS
T ss_pred             HHHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence                   11110            0112458888886  68999999877776654 45566788998876 2 335889


Q ss_pred             CcHHHHHHHHHccCCc
Q 010917          478 SSVEEALEIARAALPV  493 (497)
Q Consensus       478 ~~~~~~~~~~~~~~~~  493 (497)
                      ||++|+++.|++++..
T Consensus       450 Pt~~e~~~~~~~~~~~  465 (470)
T 1dxl_A          450 PTMSEAIKEAAMATYD  465 (470)
T ss_dssp             SCTTHHHHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhc
Confidence            9999999999876543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=3.4e-43  Score=360.47  Aligned_cols=399  Identities=20%  Similarity=0.224  Sum_probs=275.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-Ccccc------------CCCCCC----CCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYL------------FPLDKK----PARL  120 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~~l-~~~~l------------~~~~~~----~~~~  120 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||++.....  ..... ++.++            ......    ..++
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGL---STAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY   79 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence            3699999999999999999999988   8999999731100  00000 00000            000000    0000


Q ss_pred             CCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCCCCCCCC
Q 010917          121 PGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLP  195 (497)
Q Consensus       121 ~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g~~~~  195 (497)
                      .......   .......+.+++++.+++++.++.+. ++.....+.+.+|  +++.||+||+|||+.|.. |..++.+..
T Consensus        80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~-~~~~g~~~~  157 (464)
T 2a8x_A           80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL-VPGTSLSAN  157 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC-CTTCCCBTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCce
Confidence            0000000   00000011345567899999876543 4443345666677  689999999999998864 444443222


Q ss_pred             cEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEE
Q 010917          196 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  275 (497)
Q Consensus       196 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i  275 (497)
                       +   .+   .+........+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.++++||++
T Consensus       158 -~---~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i  229 (464)
T 2a8x_A          158 -V---VT---YEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQFKKLGVTI  229 (464)
T ss_dssp             -E---EC---HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEE
T ss_pred             -E---Ee---cHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHcCCEE
Confidence             2   22   2333333345799999999999999999999999999999999999984 89999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeC-CC--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEe
Q 010917          276 VKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  349 (497)
Q Consensus       276 ~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~  349 (497)
                      +++++|++++.+++ .+ .+.+. +|  +++++|.||+|+|++||+++  +++++++.+ +|+|.||+++||+.|+|||+
T Consensus       230 ~~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~  307 (464)
T 2a8x_A          230 LTATKVESIADGGS-QV-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAI  307 (464)
T ss_dssp             ECSCEEEEEEECSS-CE-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEEC
T ss_pred             EeCcEEEEEEEcCC-eE-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEe
Confidence            99999999986433 33 35554 56  67999999999999999988  788898876 57799999999999999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC---CCCCCceeeeccccCCCCcceeeEEeecCCC-----
Q 010917          350 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT---YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-----  421 (497)
Q Consensus       350 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-----  421 (497)
                      |||+..+.          .+..|..||+.+|.||++....+   |..+|++  ..++.       .+..+|....     
T Consensus       308 GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~e~~a~~~  368 (464)
T 2a8x_A          308 GDVNGLLQ----------LAHVAEAQGVVAAETIAGAETLTLGDHRMLPRA--TFCQP-------NVASFGLTEQQARNE  368 (464)
T ss_dssp             GGGGCSSC----------SHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEE--ECSSS-------EEEEEECCHHHHHHT
T ss_pred             ECcCCCcc----------CHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEE--EECCC-------CeEEEcCCHHHHHhc
Confidence            99997532          45579999999999999723333   4556653  22221       1455665321     


Q ss_pred             --cEEE-E-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCC-h-hhhcCCCcHHH
Q 010917          422 --ETIE-I-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVD-K-AKLQQASSVEE  482 (497)
Q Consensus       422 --~~~~-~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~  482 (497)
                        .+.. .           ......|.+++++  +++|+|+++++..+.++ ..+..+++.+.+++ . ..++.|||++|
T Consensus       369 g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e  448 (464)
T 2a8x_A          369 GYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSE  448 (464)
T ss_dssp             TCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTH
T ss_pred             CCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHH
Confidence              1111 0           0112458888886  69999999877766554 45566788888876 2 33588999999


Q ss_pred             HHHHHHccCC
Q 010917          483 ALEIARAALP  492 (497)
Q Consensus       483 ~~~~~~~~~~  492 (497)
                      +++.|++++.
T Consensus       449 ~~~~~~~~~~  458 (464)
T 2a8x_A          449 ALQECFHGLV  458 (464)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987644

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.1e-43  Score=357.23  Aligned_cols=396  Identities=21%  Similarity=0.282  Sum_probs=274.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-Ccccc----------------CCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL----------------FPLDKKPAR  119 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~l----------------~~~~~~~~~  119 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||++. ..-.   .... ++.++                ........+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~-~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN-LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTID   78 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCC-CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            4799999999999999999999987   899999983 2100   0000 00000                000000000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC-cEEEeccEEeccCCCCCcCCCCCCCCCC
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP  195 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lvlAtG~~~~~~~~~~g~~~~  195 (497)
                      +..+....   .......+.+++++.+++++.++.+ .++.....+.+.+| +++.||+||+|||+.|.. |..++.+..
T Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~-~~~~g~~~~  156 (455)
T 1ebd_A           79 FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE-LPNFKFSNR  156 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECC-BTTBCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC-CCCCCccce
Confidence            00000000   0000001134556679999987644 46765556666777 679999999999998874 444443221


Q ss_pred             cEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEE
Q 010917          196 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  275 (497)
Q Consensus       196 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i  275 (497)
                       +   .+   ..........+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus       157 -v---~~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i  228 (455)
T 1ebd_A          157 -I---LD---STGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEV  228 (455)
T ss_dssp             -E---EC---HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred             -E---ec---HHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence             2   22   2333333345799999999999999999999999999999999998875 79999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEe
Q 010917          276 VKGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  349 (497)
Q Consensus       276 ~~~~~v~~i~~~~~~~v~~v~~~---~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~  349 (497)
                      +++++|++++.+++ .+ .+.+.   +++++++|.||+|+|++|++++  +++++++.+ +|+|.||+++||+.|+|||+
T Consensus       229 ~~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~  306 (455)
T 1ebd_A          229 VTNALAKGAEERED-GV-TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAI  306 (455)
T ss_dssp             EESEEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred             EeCCEEEEEEEeCC-eE-EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEE
Confidence            99999999986433 22 34443   4568999999999999999987  678888876 57799999999999999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccccCCCCcceeeEEeecCCC------
Q 010917          350 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------  421 (497)
Q Consensus       350 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------  421 (497)
                      |||+..+.          .+..|..||+.+|.+|++. ..+  |..+|+  ...++..       +..+|....      
T Consensus       307 GD~~~~~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~g  366 (455)
T 1ebd_A          307 GDIVPGPA----------LAHKASYEGKVAAEAIAGH-PSAVDYVAIPA--VVFSDPE-------CASVGYFEQQAKDEG  366 (455)
T ss_dssp             GGGSSSCC----------CHHHHHHHHHHHHHHHTSC-CCCCCCSCCCE--EECSSSC-------EEEEECCHHHHHTTT
T ss_pred             eccCCCcc----------cHHHHHHHHHHHHHHHcCC-CccCCCCCCCE--EEECCCc-------eEEEeCCHHHHHhcC
Confidence            99997542          4556999999999999974 333  444554  3323221       445554321      


Q ss_pred             -cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCC--hhhhcCCCcHHHH
Q 010917          422 -ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVEEA  483 (497)
Q Consensus       422 -~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~  483 (497)
                       .+...            ......|.+++++  +++|+|+++++..+.++. .+..+++.+.+++  ...++.|||++|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~  446 (455)
T 1ebd_A          367 IDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEI  446 (455)
T ss_dssp             CCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHH
T ss_pred             CCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHH
Confidence             11110            0112458888886  699999998777666544 5566788888886  3446899999999


Q ss_pred             HHHHHccC
Q 010917          484 LEIARAAL  491 (497)
Q Consensus       484 ~~~~~~~~  491 (497)
                      ++.|++++
T Consensus       447 ~~~~~~~~  454 (455)
T 1ebd_A          447 AMEAAEVA  454 (455)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=1.4e-43  Score=364.81  Aligned_cols=399  Identities=17%  Similarity=0.236  Sum_probs=274.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-Ccc----------------ccCCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKG----------------YLFPLDKKPAR  119 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~----------------~l~~~~~~~~~  119 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||+++.....   .... ++.                +-........+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~   82 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELD   82 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence            5799999999999999999999988   89999996543200   0000 000                00000000000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC------------cEEEeccEEeccCCCCC
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG------------KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g------------~~i~~d~lvlAtG~~~~  184 (497)
                      +.......   .......+..++++.+++++.++.+. ++.....+.+.+|            .++.||+||+|||+.|.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A           83 IDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence            00000000   00000001234567899999876543 4443233443445            57999999999999987


Q ss_pred             cCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHH
Q 010917          185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  264 (497)
Q Consensus       185 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~  264 (497)
                      .++.++. + ..+.   +   .+........+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+
T Consensus       162 ~~~~i~~-~-~~v~---~---~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l  232 (482)
T 1ojt_A          162 KLPFIPE-D-PRII---D---SSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVW  232 (482)
T ss_dssp             CCSSCCC-C-TTEE---C---HHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHH
T ss_pred             CCCCCCc-c-CcEE---c---HHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cCHHHHHHH
Confidence            5442332 1 1232   2   3333333345899999999999999999999999999999999999985 899999999


Q ss_pred             HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC----CcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecC
Q 010917          265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDG  337 (497)
Q Consensus       265 ~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~----g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~  337 (497)
                      .+.++++||+++++++|.+++..+++  ..+.+.+    |+++++|.||+|+|++||+++  +++++++.+ +|+|.||+
T Consensus       233 ~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~  310 (482)
T 1ojt_A          233 QKQNEYRFDNIMVNTKTVAVEPKEDG--VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDK  310 (482)
T ss_dssp             HHHHGGGEEEEECSCEEEEEEEETTE--EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCT
T ss_pred             HHHHHhcCCEEEECCEEEEEEEcCCe--EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCC
Confidence            99999999999999999999864322  3566666    778999999999999999987  688898876 47799999


Q ss_pred             CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEe
Q 010917          338 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFF  416 (497)
Q Consensus       338 ~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~  416 (497)
                      ++||+.|+|||+|||+..+.          .+..|..||+.+|.||++... ..|..+|++  ..++..       +..+
T Consensus       311 ~~~t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~~~-------~a~v  371 (482)
T 1ojt_A          311 QMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGHKAYFDARVIPGV--AYTSPE-------VAWV  371 (482)
T ss_dssp             TSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCCCCCCCCCCCEE--ECSSSC-------EEEE
T ss_pred             CcccCCCCEEEEEcccCCCc----------cHHHHHHHHHHHHHHHcCCCccCCCCCCCEE--EEcCCC-------eEEE
Confidence            99999999999999998542          456799999999999997431 234445643  222221       4556


Q ss_pred             ecCCC-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCC-h-h
Q 010917          417 GDNVG-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD-K-A  472 (497)
Q Consensus       417 g~~~~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~  472 (497)
                      |....       .+..  .          ......|.+++++  +|+|+|+++++..+.++. .+..+++.+.+++ . .
T Consensus       372 G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~  451 (482)
T 1ojt_A          372 GETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGK  451 (482)
T ss_dssp             ECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred             eCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhc
Confidence            65421       1111  0          0112458888884  699999998777666644 5556788998876 2 3


Q ss_pred             hhcCCCcHHHHHHHHHccCC
Q 010917          473 KLQQASSVEEALEIARAALP  492 (497)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~  492 (497)
                      .++.|||++|++..|++++.
T Consensus       452 ~~~~~Pt~~e~~~~a~~~~~  471 (482)
T 1ojt_A          452 TIHPHPTLGESIGMAAEVAL  471 (482)
T ss_dssp             SCCCSSSSTTHHHHHHHHHH
T ss_pred             CccCCCCHHHHHHHHHHHHh
Confidence            46899999999999987543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.3e-42  Score=356.05  Aligned_cols=399  Identities=16%  Similarity=0.173  Sum_probs=278.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCCC-cccc-----------CCCCCCCCCCCCCc
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PALT-KGYL-----------FPLDKKPARLPGFH  124 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~---~~l~-~~~l-----------~~~~~~~~~~~~~~  124 (497)
                      .+||+|||||+||++||..|++.|+   +|+|||+.+.....-   ...+ +.++           ........++....
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~---~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKY---NVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQ   80 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence            4799999999999999999999998   899999776432100   0000 0000           00000000000000


Q ss_pred             cccCC--CCC--CCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcE--EEeccEEeccCCCCCcCCCCCCCCCCcEE
Q 010917          125 TCVGS--GGE--RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKIGGYLPGVH  198 (497)
Q Consensus       125 ~~~~~--~~~--~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~--i~~d~lvlAtG~~~~~~~~~~g~~~~gv~  198 (497)
                      .....  ...  .....++++.+++++.+ ++..++.....+.+++|+.  +.||+||+|||+.|. .|.++|.+  +  
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~--~--  154 (466)
T 3l8k_A           81 DRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA-KLRLPGVE--Y--  154 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC-CCCCTTGG--G--
T ss_pred             HHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc-CCCCCCcc--c--
Confidence            00000  000  01122334568999886 7888998777888888888  999999999999887 45555532  2  


Q ss_pred             EecCHHHHHHHH-HhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEc
Q 010917          199 YIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       199 ~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                       +.+..+...+. .....+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.++   |++++
T Consensus       155 -~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~  230 (466)
T 3l8k_A          155 -CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKF  230 (466)
T ss_dssp             -SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEEC
T ss_pred             -eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEE
Confidence             22323322111 22335789999999999999999999999999999999999986449999999888776   99999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeccCcCCCcc-hhhcCCcccCCCEEecCCCCCCCCcEEEeccc
Q 010917          278 GASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSP-FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV  352 (497)
Q Consensus       278 ~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vv~a~G~~p~~~~-~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~  352 (497)
                      +++|++++..+++.+ .+.+.  +|+  ++++|.||+|+|++|++++ +++++++.++++|.||+++||+.|+|||+|||
T Consensus       231 ~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD~  309 (466)
T 3l8k_A          231 NSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDA  309 (466)
T ss_dssp             SCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCCTTCBCSSTTEEECGGG
T ss_pred             CCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCCEeECCCccCCCCCEEEEEec
Confidence            999999986432444 46666  665  8999999999999999986 78889987643499999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcC--CC--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc------
Q 010917          353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA--QT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------  422 (497)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~--~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------  422 (497)
                      +..+.          .+..|..||+.+|.||++.  ..  ..+..+|+  . .|..+      .+..+|....+      
T Consensus       310 ~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~-~~~~~------~~a~vG~te~~a~~~g~  370 (466)
T 3l8k_A          310 NGLAP----------YYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--T-IYTIP------SLSYVGILPSKARKMGI  370 (466)
T ss_dssp             TCSCC----------SHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--E-ECSSS------CEEEEECCHHHHHHHTC
T ss_pred             CCCCc----------cHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--E-EECCC------CeEEecCCHHHHHhCCC
Confidence            98632          5567999999999999975  32  24455554  2 23221      15566654321      


Q ss_pred             -E-EEEc-----------cCCCcEEEEEEEC--CEEEEEEeecCChHHhh-HHHHHHhCCCCCC--hhhhcCCCcHHHHH
Q 010917          423 -T-IEIG-----------NFDPKIATFWIDS--GKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVEEAL  484 (497)
Q Consensus       423 -~-~~~~-----------~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~  484 (497)
                       . +..-           .....+.++.++.  |+|+|+++++.++.++. .+..+++.+.+++  ...++.|||++|++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~  450 (466)
T 3l8k_A          371 EIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEII  450 (466)
T ss_dssp             CEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHH
T ss_pred             CEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHH
Confidence             1 1110           0124577887764  89999999888777755 4455678998886  34469999999999


Q ss_pred             HHHHccC
Q 010917          485 EIARAAL  491 (497)
Q Consensus       485 ~~~~~~~  491 (497)
                      +.|+++.
T Consensus       451 ~~~~~~~  457 (466)
T 3l8k_A          451 SYTARKV  457 (466)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=4.1e-42  Score=350.62  Aligned_cols=391  Identities=18%  Similarity=0.240  Sum_probs=271.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC---------------CCccccCCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA---------------LTKGYLFPLDKKPAR  119 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~~---------------l~~~~l~~~~~~~~~  119 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||++....-  ..   |.               ....+.........+
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~   80 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN   80 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            4799999999999999999999987   8999999742100  00   00               000000000000000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                      +..+....   .......+...+++.+++++.+ ++..++.  +++.+ +++.+.||+||+|||+.|. .|.++|.  + 
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~-~p~i~g~--~-  152 (450)
T 1ges_A           81 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPS-HPDIPGV--E-  152 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEEC-CCCSTTG--G-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCC-CCCCCCc--c-
Confidence            00000000   0000001123346679999987 4555664  56777 6778999999999999887 3544442  1 


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                        ...+   .+.+......+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+.+.+++.||+++
T Consensus       153 --~~~~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~  226 (450)
T 1ges_A          153 --YGID---SDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLH  226 (450)
T ss_dssp             --GSBC---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEE
T ss_pred             --ceec---HHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHHHHHHHHHHHHCCCEEE
Confidence              1222   3334443446899999999999999999999999999999999998874 899999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc-c-hhhcCCccc-CCCEEecCCCCCCCCcEEEecccc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  353 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~  353 (497)
                      ++++|++++..+++. ..+.+.+|+++++|.||+|+|++|+++ + ++++|++.+ +|+|.||++++|+.|+|||+|||+
T Consensus       227 ~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~  305 (450)
T 1ges_A          227 TNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNT  305 (450)
T ss_dssp             CSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGG
T ss_pred             eCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccC
Confidence            999999998654443 367888999999999999999999987 3 688888876 677999999999999999999998


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCC---------
Q 010917          354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------  421 (497)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---------  421 (497)
                      ..+.          .+..|..||+.+|.||+++..   ..|..+|+.   .|..+      .+..+|....         
T Consensus       306 ~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~~------~~a~vG~~e~~a~~~~g~~  366 (450)
T 1ges_A          306 GAVE----------LTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTV---VFSHP------PIGTVGLTEPQAREQYGDD  366 (450)
T ss_dssp             TSCC----------CHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEE---ECCSS------CEEEEECCHHHHHHHHCGG
T ss_pred             CCCc----------cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCC------ceEEEeCCHHHHHhcCCCC
Confidence            6432          566799999999999997432   345566653   22211      1444554321         


Q ss_pred             cEEE-E-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHH
Q 010917          422 ETIE-I-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL  484 (497)
Q Consensus       422 ~~~~-~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~  484 (497)
                      .+.. .           ......+.++.++  +++|+|+++++..+.++... ..+++.+.+++ . ..++.|||++|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T 1ges_A          367 QVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF  446 (450)
T ss_dssp             GEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             cEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHH
Confidence            1111 0           1112346777765  58999999877777775544 45578888876 2 3468999999988


Q ss_pred             HHH
Q 010917          485 EIA  487 (497)
Q Consensus       485 ~~~  487 (497)
                      ..+
T Consensus       447 ~~~  449 (450)
T 1ges_A          447 VTM  449 (450)
T ss_dssp             GSC
T ss_pred             Hhh
Confidence            653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2e-42  Score=357.52  Aligned_cols=401  Identities=17%  Similarity=0.238  Sum_probs=265.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC--C------------CccccCCCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA--L------------TKGYLFPLDKKPARL  120 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~~--l------------~~~~l~~~~~~~~~~  120 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||+++...-  ..   |.  +            ...+-.... ...++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~~   77 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNA---KVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK-FSFNL   77 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC-CCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC-CccCH
Confidence            4799999999999999999999987   8999999852100  00   00  0            000000000 00000


Q ss_pred             CCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC-------------CcEEEeccEEeccCCCCC
Q 010917          121 PGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-------------GKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       121 ~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-------------g~~i~~d~lvlAtG~~~~  184 (497)
                      +.+.....   ......+..++++.+++++.++ +..++.  +++.+.+             +..+.||+||+|||+.|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~  154 (500)
T 1onf_A           78 PLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  154 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence            00000000   0000011234567799999874 333443  4455533             567999999999999987


Q ss_pred             cCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHH
Q 010917          185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  264 (497)
Q Consensus       185 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~  264 (497)
                      . |.++|.  +.+.+      ++.+..... +++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+
T Consensus       155 ~-p~i~G~--~~~~~------~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l  223 (500)
T 1onf_A          155 F-PPVKGI--ENTIS------SDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVL  223 (500)
T ss_dssp             C-CSCTTG--GGCEE------HHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHH
T ss_pred             C-CCCCCC--CcccC------HHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhHHHH
Confidence            4 544543  12222      233333222 899999999999999999999999999999999999874 899999999


Q ss_pred             HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeccCcCCCc-c-hhhcCCcccCCCEEecCCCCC
Q 010917          265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVS-P-FERVGLNSSVGGIQVDGQFRT  341 (497)
Q Consensus       265 ~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~-i~~D~vv~a~G~~p~~~-~-~~~~gl~~~~g~i~vd~~~~t  341 (497)
                      .+.++++||+++++++|++++..+++. ..+.+.+|++ +++|.||+|+|++|+++ + +++++++.++|+|.||+++||
T Consensus       224 ~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~~t  302 (500)
T 1onf_A          224 ENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRT  302 (500)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTCBC
T ss_pred             HHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCccc
Confidence            999999999999999999998654443 3577889988 99999999999999986 4 688888887778999999999


Q ss_pred             CCCcEEEeccccccCCcc-----------------------CC-cccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCC
Q 010917          342 RMPGIFAIGDVAAFPLKM-----------------------YD-RTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLP  395 (497)
Q Consensus       342 ~~~~iya~GD~~~~~~~~-----------------------~g-~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p  395 (497)
                      +.|+|||+|||+..+...                       .+ .......+..|..||+.+|.||+++..  ..|..+|
T Consensus       303 ~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p  382 (500)
T 1onf_A          303 SVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIP  382 (500)
T ss_dssp             SSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCC
T ss_pred             CCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCC
Confidence            999999999999532100                       00 002245788899999999999997443  2455566


Q ss_pred             ceeeeccccCCCCcceeeEEeecCCC---------cEEE----------------EccCCCcEEEEEEE--CCEEEEEEe
Q 010917          396 YFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE----------------IGNFDPKIATFWID--SGKLKGVLV  448 (497)
Q Consensus       396 ~~~~~~~~~~g~~~~~~~~~~g~~~~---------~~~~----------------~~~~~~~~~~~~~~--~~~~~g~~~  448 (497)
                      +.   .|...      .+..+|....         .+..                .......+.++.++  +++|+|+++
T Consensus       383 ~~---~~~~~------~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~  453 (500)
T 1onf_A          383 TV---IFSHP------PIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHI  453 (500)
T ss_dssp             EE---ECCSS------CEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEE
T ss_pred             eE---EEcCc------ceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEE
Confidence            52   22211      1444453311         1111                01112447777774  589999998


Q ss_pred             ecCChHHhhHH-HHHHhCCCCCC--hhhhcCCCcHHHHHHHHH
Q 010917          449 ESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALEIAR  488 (497)
Q Consensus       449 ~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  488 (497)
                      ++..+.++... ..+++.+.+++  ...++.|||++|++..++
T Consensus       454 ~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  496 (500)
T 1onf_A          454 IGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ  496 (500)
T ss_dssp             ESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred             ECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence            77767665544 45678888776  234689999999998765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.2e-42  Score=358.82  Aligned_cols=405  Identities=18%  Similarity=0.264  Sum_probs=276.2

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C---CC--------C-------CccccCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R---PA--------L-------TKGYLFPLDK  115 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~---~~--------l-------~~~~l~~~~~  115 (497)
                      +++++||+||||||||++||..|++.|+   +|+|||+++.....   .   |.        .       ...+-.....
T Consensus        22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~   98 (491)
T 3urh_A           22 SMMAYDLIVIGSGPGGYVCAIKAAQLGM---KVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVAN   98 (491)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCC
T ss_pred             hcccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCC
Confidence            4456899999999999999999999998   89999987543210   0   00        0       0000000000


Q ss_pred             CCCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCCC
Q 010917          116 KPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKI  190 (497)
Q Consensus       116 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~~  190 (497)
                      ...++.......   ..........++++.+++++.+ .+..++.....+.+.+|  .++.||+||||||+.|..+   |
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~i---p  174 (491)
T 3urh_A           99 PKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGI---P  174 (491)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCB---T
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCC---C
Confidence            000000000000   0000001123456679999886 44445555556666666  5799999999999986433   3


Q ss_pred             CCC--CCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHH
Q 010917          191 GGY--LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY  268 (497)
Q Consensus       191 g~~--~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l  268 (497)
                      |..  .++...    .+++........+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       175 g~~~~~~~~~~----~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l  249 (491)
T 3urh_A          175 GVEVAFDEKTI----VSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRML  249 (491)
T ss_dssp             TBCCCCCSSSE----ECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHHH
T ss_pred             CcccccCCeeE----EehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHHH
Confidence            332  222211    123444444456899999999999999999999999999999999999875 7999999999999


Q ss_pred             HHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCC
Q 010917          269 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR  340 (497)
Q Consensus       269 ~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~  340 (497)
                      ++.||++++++++++++..+++ + .+.+.+   |  +++++|.||+|+|++|++++  ++.+++..+ +|+|.||++++
T Consensus       250 ~~~gV~v~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~  327 (491)
T 3urh_A          250 TKQGIDFKLGAKVTGAVKSGDG-A-KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQ  327 (491)
T ss_dssp             HHTTCEEECSEEEEEEEEETTE-E-EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCB
T ss_pred             HhCCCEEEECCeEEEEEEeCCE-E-EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCC
Confidence            9999999999999999865333 2 344432   4  58999999999999999986  778888876 57799999999


Q ss_pred             CCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecC
Q 010917          341 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN  419 (497)
Q Consensus       341 t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~  419 (497)
                      |+.|+|||+|||+..+.          .+..|..||+.+|.+|++... ..|..+|+.  . |..+      .+..+|..
T Consensus       328 t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~-~~~p------~~a~vGlt  388 (491)
T 3urh_A          328 TSIAGVYAIGDVVRGPM----------LAHKAEDEGVAVAEIIAGQAGHVNYDVIPGV--V-YTQP------EVASVGKT  388 (491)
T ss_dssp             CSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTSCCCCCTTCCCEE--E-CSSS------CEEEEECC
T ss_pred             CCCCCEEEEEecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCEE--E-EccC------CeEEEeCC
Confidence            99999999999996542          556799999999999997432 234556652  2 3221      15556654


Q ss_pred             CCc-------E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhc
Q 010917          420 VGE-------T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQ  475 (497)
Q Consensus       420 ~~~-------~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~  475 (497)
                      ..+       + +..-.           -...+.|+.++  +++|+|+++++.++.++... ..+++.+.+++ . ...+
T Consensus       389 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~  468 (491)
T 3urh_A          389 EEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCH  468 (491)
T ss_dssp             HHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCC
T ss_pred             HHHHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCcc
Confidence            321       1 11100           12357777765  58999999988877775544 55678888886 3 3358


Q ss_pred             CCCcHHHHHHHHHccCCcc
Q 010917          476 QASSVEEALEIARAALPVE  494 (497)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~  494 (497)
                      .|||++|+++.|++++..+
T Consensus       469 ~hPt~~e~~~~~~~~~~~~  487 (491)
T 3urh_A          469 AHPTMSEAVKEAALSTFFK  487 (491)
T ss_dssp             CSSCTTHHHHHHHHHHHC-
T ss_pred             CCCChHHHHHHHHHHhhhc
Confidence            8999999999999876543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=4.2e-42  Score=354.20  Aligned_cols=317  Identities=20%  Similarity=0.313  Sum_probs=240.8

Q ss_pred             HHHc-CcEEEeCCcEEEEecCCCEEEEC---C-----CcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH
Q 010917          139 YKEK-GIEMIYQDPVTSIDIEKQTLITN---S-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  209 (497)
Q Consensus       139 ~~~~-~v~~~~~~~v~~i~~~~~~v~~~---~-----g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~  209 (497)
                      +++. +++++.+ ++..++  .+++.++   +     ++.+.||+||||||+.|.. |.++|.  +.+.      +++.+
T Consensus       117 l~~~~gv~~~~g-~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d~lViATGs~p~~-p~i~G~--~~~~------~~~~~  184 (495)
T 2wpf_A          117 FNDTEGLDFFLG-WGSLES--KNVVVVRETADPKSAVKERLQADHILLATGSWPQM-PAIPGI--EHCI------SSNEA  184 (495)
T ss_dssp             HHHCTTEEEEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCCTTG--GGCE------EHHHH
T ss_pred             HhcCCCeEEEEe-EEEEee--CCEEEEeecCCccCCCCeEEEcCEEEEeCCCCcCC-CCCCCc--cccc------cHHHH
Confidence            4567 9999987 466665  4677775   4     6789999999999999874 444543  2222      23333


Q ss_pred             HHhhccCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          210 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      ......+++++|||+|++|+|+|..|+++   |.+|+++++.+++++. +++++.+.+.+.++++||+++++++|++++.
T Consensus       185 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  263 (495)
T 2wpf_A          185 FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSL  263 (495)
T ss_dssp             TTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEE
T ss_pred             HhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            33334578999999999999999999999   9999999999999875 8999999999999999999999999999986


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcc
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                      .+++. ..+.+.+|+++++|.||+|+|++|++++  +++++++.+ +|+|.||+++||+.|+|||+|||+..+       
T Consensus       264 ~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~-------  335 (495)
T 2wpf_A          264 NTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL-------  335 (495)
T ss_dssp             CTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC-------
T ss_pred             cCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-------
Confidence            53333 4678889999999999999999999974  678898876 678999999999999999999999642       


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E-EEE-------
Q 010917          364 ARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-IEI-------  426 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~-~~~-------  426 (497)
                         ..+..|..||+.+|.+|++...  ..|..+|+  . .|...      .+..+|....+       + +..       
T Consensus       336 ---~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~-~~~~~------~~a~vGl~e~~a~~~~~~~~v~~~~~~~~~  403 (495)
T 2wpf_A          336 ---MLTPVAINEGAALVDTVFGNKPRKTDHTRVAS--A-VFSIP------PIGTCGLIEEVAAKEFEKVAVYMSSFTPLM  403 (495)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE--E-ECCSS------CEEEEECCHHHHHHHSSEEEEEEEEECCTH
T ss_pred             ---cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE--E-EECCC------CeEEEeCCHHHHHhcCCCEEEEEEecCchh
Confidence               2566799999999999997433  34555554  2 23221      15566654321       1 111       


Q ss_pred             ----ccCCCcE-EEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCC--hhhhcCCCcHHHHHHHHH
Q 010917          427 ----GNFDPKI-ATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVEEALEIAR  488 (497)
Q Consensus       427 ----~~~~~~~-~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  488 (497)
                          +.....+ .++.++  +++|+|+++++.++.++. .+..+++.+.+++  ...++.|||++|++..++
T Consensus       404 ~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  475 (495)
T 2wpf_A          404 HNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR  475 (495)
T ss_dssp             HHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred             hhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence                1112457 788776  589999999777776655 4456678888876  234689999999998765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=7.1e-42  Score=350.25  Aligned_cols=396  Identities=20%  Similarity=0.258  Sum_probs=275.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-Ccccc--------------CCC-CCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYL--------------FPL-DKKPARLP  121 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~~l-~~~~l--------------~~~-~~~~~~~~  121 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||+++....  ..... ++.++              +.. .....++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~---~V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGL---KVLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence            4799999999999999999999987   8999999862100  00000 00000              000 00000000


Q ss_pred             CCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEE
Q 010917          122 GFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVH  198 (497)
Q Consensus       122 ~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~  198 (497)
                      .+.....   .........++++.+++++.++.+ .++  .+++.+. |+++.||+||+|||++|..+|.+++.  ..+.
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~--~~v~  156 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFAR-LVG--PKEVEVG-GERYGAKSLILATGSEPLELKGFPFG--EDVW  156 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEE-EEE--TTEEEET-TEEEEEEEEEECCCEEECCBTTBCCS--SSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEE-Ecc--CCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC--CcEE
Confidence            0000000   000000123556789999987544 455  4677776 67899999999999998754323331  1232


Q ss_pred             EecCHHHHHHHHHhhc-cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEc
Q 010917          199 YIRDVADADALISSLE-KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       199 ~~~~~~~~~~~~~~~~-~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                         +   .+.+.+... .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++
T Consensus       157 ---~---~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~  229 (464)
T 2eq6_A          157 ---D---STRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIRVRT  229 (464)
T ss_dssp             ---C---HHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEEC
T ss_pred             ---c---HHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhcCCEEEc
Confidence               2   333333223 5799999999999999999999999999999999998874 7999999999999999999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeC-C--Cc--EEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEe
Q 010917          278 GASIKNLEAGSDGRVAAVKLE-D--GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  349 (497)
Q Consensus       278 ~~~v~~i~~~~~~~v~~v~~~-~--g~--~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~  349 (497)
                      +++|++++..+ +.+ .+.+. +  |+  ++++|.||+|+|++|++++  ++.+++..+ +|+|.||+++||+.|+|||+
T Consensus       230 ~~~v~~i~~~~-~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~  307 (464)
T 2eq6_A          230 KTKAVGYEKKK-DGL-HVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAI  307 (464)
T ss_dssp             SEEEEEEEEET-TEE-EEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred             CCEEEEEEEeC-CEE-EEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEE
Confidence            99999998643 333 45655 6  76  8999999999999999986  578888874 57799999999999999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCC-------
Q 010917          350 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  421 (497)
Q Consensus       350 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------  421 (497)
                      |||+..+.          .+..|..||+.+|.+|++... .+|. +|++  ..++.       .+..+|....       
T Consensus       308 GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~--~~~~~-------~~a~vG~~e~~a~~~g~  367 (464)
T 2eq6_A          308 GDAARPPL----------LAHKAMREGLIAAENAAGKDSAFDYQ-VPSV--VYTSP-------EWAGVGLTEEEAKRAGY  367 (464)
T ss_dssp             GGGTCSSC----------CHHHHHHHHHHHHHHHTTCCCCCCCC-CCEE--ECSSS-------EEEEEECCHHHHHHTTC
T ss_pred             eccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCC-CCeE--EECCC-------CEEEEeCCHHHHHhcCC
Confidence            99997542          455699999999999996432 2345 6653  21221       1455664432       


Q ss_pred             cEEE-Ec-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCC--hhhhcCCCcHHHHH
Q 010917          422 ETIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVD--KAKLQQASSVEEAL  484 (497)
Q Consensus       422 ~~~~-~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  484 (497)
                      .+.. .-           .....+.+++++  +|+|+|+++++..+.++ ..+..+++.+.+++  ...++.|||++|++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~  447 (464)
T 2eq6_A          368 KVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESL  447 (464)
T ss_dssp             CEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHH
T ss_pred             CEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHH
Confidence            1111 00           112457888876  58999999877777664 55667789998886  34468899999999


Q ss_pred             HHHHccCCc
Q 010917          485 EIARAALPV  493 (497)
Q Consensus       485 ~~~~~~~~~  493 (497)
                      ..|++++..
T Consensus       448 ~~~~~~~~~  456 (464)
T 2eq6_A          448 MEAAEAFHK  456 (464)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999876543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=6.7e-42  Score=352.45  Aligned_cols=317  Identities=18%  Similarity=0.249  Sum_probs=241.2

Q ss_pred             HHHc-CcEEEeCCcEEEEecCCCEEEEC-----CC---cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH
Q 010917          139 YKEK-GIEMIYQDPVTSIDIEKQTLITN-----SG---KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  209 (497)
Q Consensus       139 ~~~~-~v~~~~~~~v~~i~~~~~~v~~~-----~g---~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~  209 (497)
                      +++. +++++.+ ++..++.  +++.+.     +|   ..+.||+||||||+.|.. |.++|.  +.   +.   +.+.+
T Consensus       113 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p~~-p~i~g~--~~---~~---~~~~~  180 (490)
T 1fec_A          113 FADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYILLATGSWPQH-LGIEGD--DL---CI---TSNEA  180 (490)
T ss_dssp             HHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCSBTG--GG---CB---CHHHH
T ss_pred             HhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEEEEeCCCCCCC-CCCCCc--cc---ee---cHHHH
Confidence            4567 9999987 4777765  456653     56   679999999999999874 444443  11   22   23334


Q ss_pred             HHhhccCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          210 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      ......+++++|||+|++|+|+|..|.++   |.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.
T Consensus       181 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  259 (490)
T 1fec_A          181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTK  259 (490)
T ss_dssp             TTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEE
T ss_pred             hhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            33334679999999999999999999999   9999999999999875 8999999999999999999999999999986


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc-c-hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcc
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                      .+++. ..+.+.+|+++++|.||+|+|++|+++ + ++++|++.+ +|+|.||+++||+.|+|||+|||+..+       
T Consensus       260 ~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~-------  331 (490)
T 1fec_A          260 NADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV-------  331 (490)
T ss_dssp             CTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC-------
T ss_pred             cCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-------
Confidence            53333 367888998999999999999999987 4 688899876 678999999999999999999999642       


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------EE-EE-------
Q 010917          364 ARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-EI-------  426 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~-~~-------  426 (497)
                         ..+..|..||+.+|.+|+++..  ..|..+|+  ...++..       +..+|....+       +. ..       
T Consensus       332 ---~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~~~~~~~~~~~~~~~~  399 (490)
T 1fec_A          332 ---MLTPVAINEGAAFVDTVFANKPRATDHTKVAC--AVFSIPP-------MGVCGYVEEDAAKKYDQVAVYESSFTPLM  399 (490)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE--EECCSSC-------EEEEECCHHHHHHHCSEEEEEEEEECCHH
T ss_pred             ---cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE--EEECCCC-------eEEEeCCHHHHHhcCCCEEEEEeecChhh
Confidence               2567799999999999997433  34555664  2222222       5566654321       11 11       


Q ss_pred             ----ccCCCcEE-EEEEE--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCC-h-hhhcCCCcHHHHHHHHH
Q 010917          427 ----GNFDPKIA-TFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD-K-AKLQQASSVEEALEIAR  488 (497)
Q Consensus       427 ----~~~~~~~~-~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  488 (497)
                          +.....|. |++++  +++|+|+++++..+.++. .+..+++.+.+++ . ..++.|||++|+++.++
T Consensus       400 ~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  471 (490)
T 1fec_A          400 HNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR  471 (490)
T ss_dssp             HHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred             hhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHH
Confidence                11124577 88876  589999999777776655 4456688888876 2 34689999999998765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=3.3e-41  Score=347.03  Aligned_cols=402  Identities=18%  Similarity=0.236  Sum_probs=279.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc----------------------------cc
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG----------------------------YL  110 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~----------------------------~l  110 (497)
                      +++||+|||||+||++||..|++.|+   +|+|||+++...-. ..+...                            +-
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~gG~-~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g   77 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKGKEGK-TALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHG   77 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBCTTSS-BCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCccCCC-CCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35899999999999999999999998   89999998622100 000000                            00


Q ss_pred             CCCCCCCCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCc
Q 010917          111 FPLDKKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       111 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      ........+++......   ..........++++.+++++.+ ++..++.....+...+|  ..+.||+||+|||+.|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~  156 (476)
T 3lad_A           78 ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVE  156 (476)
T ss_dssp             EECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred             cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCC
Confidence            00000000000000000   0000000123455679999986 45556666667777777  579999999999998874


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917          186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  265 (497)
Q Consensus       186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~  265 (497)
                      +|. ++.+.+.+.+      +..+......+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus       157 ~~~-~~~~~~~v~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~  228 (476)
T 3lad_A          157 IPP-APVDQDVIVD------STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQ  228 (476)
T ss_dssp             CTT-SCCCSSSEEE------HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHH
T ss_pred             CCC-CCCCcccEEe------chhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHHHHH
Confidence            432 2322334443      3333333456899999999999999999999999999999999999974 8999999999


Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCC
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF  339 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~  339 (497)
                      +.+++.||+++++++|++++..+++ + .+.+.++   +++++|.||+|+|++|++++  ++.+++..+ +|+|.||+++
T Consensus       229 ~~l~~~Gv~v~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~  306 (476)
T 3lad_A          229 KILTKQGLKILLGARVTGTEVKNKQ-V-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC  306 (476)
T ss_dssp             HHHHHTTEEEEETCEEEEEEECSSC-E-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTS
T ss_pred             HHHHhCCCEEEECCEEEEEEEcCCE-E-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCc
Confidence            9999999999999999999865333 3 3555544   67999999999999999874  677888876 5779999999


Q ss_pred             CCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeec
Q 010917          340 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGD  418 (497)
Q Consensus       340 ~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~  418 (497)
                      +|+.|+|||+|||+..+.          .+..|..||+.+|.+|++... .+|..+|+.  . |..+      .+..+|.
T Consensus       307 ~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~-~~~~------~~a~vGl  367 (476)
T 3lad_A          307 ATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHKAQMNYDLIPAV--I-YTHP------EIAGVGK  367 (476)
T ss_dssp             BCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCCCCCCTTCCCEE--E-CSSS------EEEEEEC
T ss_pred             ccCCCCEEEEEccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCCCCCEE--E-ECcC------CEEEeeC
Confidence            999999999999996442          456699999999999997542 245556653  2 3221      1455665


Q ss_pred             CCCc------EEEEcc-------------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhh
Q 010917          419 NVGE------TIEIGN-------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL  474 (497)
Q Consensus       419 ~~~~------~~~~~~-------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~  474 (497)
                      ...+      -+..+.             ....+.|+.++  +++|+|+++++.++.++... ..+++.+.+++ . ..+
T Consensus       368 te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~  447 (476)
T 3lad_A          368 TEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMV  447 (476)
T ss_dssp             CHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSC
T ss_pred             CHHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc
Confidence            4321      011110             12357777765  48999999988877776544 45678888876 3 335


Q ss_pred             cCCCcHHHHHHHHHccCCcc
Q 010917          475 QQASSVEEALEIARAALPVE  494 (497)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~  494 (497)
                      +.|||++|+++.|++++..+
T Consensus       448 ~~hPt~~e~~~~~~~~~~~~  467 (476)
T 3lad_A          448 FAHPALSEALHEAALAVSGH  467 (476)
T ss_dssp             CCSSCSHHHHHHHHHHHTTC
T ss_pred             cCCCChHHHHHHHHHHHhcc
Confidence            88999999999999876543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=1.6e-42  Score=354.80  Aligned_cols=392  Identities=18%  Similarity=0.285  Sum_probs=271.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC--C------------CccccCCCCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA--L------------TKGYLFPLDKKPAR  119 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~~--l------------~~~~l~~~~~~~~~  119 (497)
                      .++||+|||||+||++||..|++.|+   +|+|||++....-  ..   |.  +            ...+-........+
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGK---RVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLD   79 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCC---cEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence            35799999999999999999999987   8999999742100  00   00  0            00000000000000


Q ss_pred             CCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          120 LPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       120 ~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                      +..+.....   ..+...+...+++.+++++.+ ++..++  .+++.+ +++++.||+||+|||+.|.. |.++|.  + 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~G~--~-  151 (463)
T 2r9z_A           80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVD--AHTIEV-EGQRLSADHIVIATGGRPIV-PRLPGA--E-  151 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEE-TTEEEEEEEEEECCCEEECC-CSCTTG--G-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEcc--CCEEEE-CCEEEEcCEEEECCCCCCCC-CCCCCc--c-
Confidence            000000000   000000123346679999987 555565  357777 67789999999999998874 444442  1 


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                        .+.   +.+.+......+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.+++.||+++
T Consensus       152 --~~~---~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~  225 (463)
T 2r9z_A          152 --LGI---TSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIETH  225 (463)
T ss_dssp             --GSB---CHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEE
T ss_pred             --cee---cHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEE
Confidence              122   23344443446799999999999999999999999999999999998875 899999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV  352 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~  352 (497)
                      ++++|++++..+++  ..+.+.+|+ ++++|.||+|+|++|++++  +++++++.+ +|+|.||++++|+.|+|||+|||
T Consensus       226 ~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~  303 (463)
T 2r9z_A          226 LEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI  303 (463)
T ss_dssp             SSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGG
T ss_pred             eCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeec
Confidence            99999999864333  467888998 8999999999999999873  577888875 67799999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCC--------
Q 010917          353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------  421 (497)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--------  421 (497)
                      +..+.          .+..|..||+.+|.||++...   ..|..+|+.   .|..+.      +..+|....        
T Consensus       304 ~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~~~------~a~vGl~e~~a~~~~g~  364 (463)
T 2r9z_A          304 TGRDQ----------LTPVAIAAGRRLAERLFDGQSERKLDYDNIPTV---VFAHPP------LSKVGLSEPEARERLGD  364 (463)
T ss_dssp             GTSCC----------CHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEE---ECCSSC------EEEEECCHHHHHHHHCS
T ss_pred             CCCcc----------cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEE---EeCCCC------eEEEcCCHHHHHhcCCC
Confidence            86432          566799999999999997542   345666653   222111      344453211        


Q ss_pred             cEEE-E-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHH
Q 010917          422 ETIE-I-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL  484 (497)
Q Consensus       422 ~~~~-~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~  484 (497)
                      .+.. .           ......+.+++++  +++|+|+++++..+.++... ..+++.+.+++ . ..++.|||++|++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  444 (463)
T 2r9z_A          365 VLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEEL  444 (463)
T ss_dssp             CEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGG
T ss_pred             CEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHH
Confidence            1111 0           1112447788775  58999999877767665544 45678888776 2 3368999999998


Q ss_pred             HHHH
Q 010917          485 EIAR  488 (497)
Q Consensus       485 ~~~~  488 (497)
                      +.++
T Consensus       445 ~~~~  448 (463)
T 2r9z_A          445 VTLK  448 (463)
T ss_dssp             GCCC
T ss_pred             HHHH
Confidence            8754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=5.1e-42  Score=353.09  Aligned_cols=395  Identities=19%  Similarity=0.224  Sum_probs=273.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---C--------------CCCccccCCCCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---P--------------ALTKGYLFPLDKKPAR  119 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~--------------~l~~~~l~~~~~~~~~  119 (497)
                      .++||+||||||||++||..|++.|+   +|+|||++....-  ..   |              .....+.........+
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~---~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN   95 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            45899999999999999999999998   8999998742100  00   0              0000000000000000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCC--CCCCCCC
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYL  194 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~--~~~g~~~  194 (497)
                      +.......   ...+.......+++.+++++.+ ++..++.....+. .+++++.||+||||||+.|..++  .++|.+ 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~-  172 (478)
T 3dk9_A           96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS-  172 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc-
Confidence            00000000   0000001122345679999886 5666666666776 46677999999999999887431  444422 


Q ss_pred             CcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917          195 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       195 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                          ..   .+++.+......+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||+
T Consensus       173 ----~~---~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~gv~  244 (478)
T 3dk9_A          173 ----LG---ITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVE  244 (478)
T ss_dssp             ----GS---BCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             ----ee---EchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHHHCCCE
Confidence                11   224444444446799999999999999999999999999999999998864 8999999999999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCC---C----cEEEcCEEEEeccCcCCCc-c-hhhcCCccc-CCCEEecCCCCCCCC
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKLED---G----STIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMP  344 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~~~---g----~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~  344 (497)
                      +++++.+++++..+++....+.+.+   |    +++++|.||+|+|++|+++ + ++.+|++.+ +|+|.||++++|+.|
T Consensus       245 i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~  324 (478)
T 3dk9_A          245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVK  324 (478)
T ss_dssp             EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSST
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCC
Confidence            9999999999876555233566665   2    5799999999999999987 4 788898875 678999999999999


Q ss_pred             cEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---CCCCCCCCceeeeccccCCCCcceeeEEeecCCC
Q 010917          345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  421 (497)
Q Consensus       345 ~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  421 (497)
                      +|||+|||+..+.          .+..|..||+.+|.+|++..   ...|..+|+.   .|..+      .+..+|....
T Consensus       325 ~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~  385 (478)
T 3dk9_A          325 GIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTV---VFSHP------PIGTVGLTED  385 (478)
T ss_dssp             TEEECGGGGCSSC----------CHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEE---ECCSS------CEEEEECCHH
T ss_pred             CEEEEEecCCCCc----------cHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCC------ceEEeeCCHH
Confidence            9999999995432          45679999999999999752   2345666652   33321      1445554432


Q ss_pred             c---------EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC--hhhhc
Q 010917          422 E---------TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQ  475 (497)
Q Consensus       422 ~---------~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~  475 (497)
                      +         +. ...           +....+.|+.++  +++|+|+++++.++.++... ..+++.+.+++  ...++
T Consensus       386 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~  465 (478)
T 3dk9_A          386 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVA  465 (478)
T ss_dssp             HHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCC
T ss_pred             HHHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccc
Confidence            1         11 100           012347777765  48999999987777776544 55678888876  34469


Q ss_pred             CCCcHHHHHHH
Q 010917          476 QASSVEEALEI  486 (497)
Q Consensus       476 ~~~~~~~~~~~  486 (497)
                      .|||++|++..
T Consensus       466 ~hPt~~e~~~~  476 (478)
T 3dk9_A          466 IHPTSSEELVT  476 (478)
T ss_dssp             CSSSSGGGGGS
T ss_pred             CCCChHHHHHh
Confidence            99999998864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.3e-41  Score=344.69  Aligned_cols=395  Identities=16%  Similarity=0.229  Sum_probs=270.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-Ccccc-----------------CCC--CCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYL-----------------FPL--DKKP  117 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l-----------------~~~--~~~~  117 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||++....  ...... ++.++                 ++.  ....
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR   81 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---EEEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCc
Confidence            4799999999999999999999987   899999953210  000000 00000                 000  0000


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 010917          118 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL  194 (497)
Q Consensus       118 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~  194 (497)
                      .++..+....   ...+......++++.+++++.++.+. ++  .+++.+++ +.+.||+||||||+.|..+|.++. + 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~-~-  155 (458)
T 1lvl_A           82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL-G-  155 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-B-
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-c-
Confidence            0000000000   00000001245677899999875543 44  46788876 779999999999999875442331 1 


Q ss_pred             CcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917          195 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       195 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                      ..+.   +   ..........+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.||+
T Consensus       156 ~~v~---~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~  228 (458)
T 1lvl_A          156 GPVI---S---STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIA  228 (458)
T ss_dssp             TTEE---C---HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCE
T ss_pred             CcEe---c---HHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCE
Confidence            1222   2   333333233579999999999999999999999999999999999987 48999999999999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCCCCcEEEec
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIG  350 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~iya~G  350 (497)
                      ++++++|++++.   +.+ .+...+|  +++++|.||+|+|++|++++  ++++|+..++++|.||++++|+.|+|||+|
T Consensus       229 i~~~~~v~~i~~---~~v-~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya~G  304 (458)
T 1lvl_A          229 LHLGHSVEGYEN---GCL-LANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIG  304 (458)
T ss_dssp             EETTCEEEEEET---TEE-EEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEECG
T ss_pred             EEECCEEEEEEe---CCE-EEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEEee
Confidence            999999999984   222 3444456  68999999999999999886  578888875338999999999999999999


Q ss_pred             cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccccCCCCcceeeEEeecCCC-------
Q 010917          351 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  421 (497)
Q Consensus       351 D~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------  421 (497)
                      ||+..+.          .+..|..||+.+|.+|++. ..+  |..+|++  ..++..       +..+|....       
T Consensus       305 D~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~--~~~~p~-------~a~vG~~e~~a~~~g~  364 (458)
T 1lvl_A          305 DVAGEPM----------LAHRAMAQGEMVAEIIAGK-ARRFEPAAIAAV--CFTDPE-------VVVVGKTPEQASQQGL  364 (458)
T ss_dssp             GGGCSSC----------CHHHHHHHHHHHHHHHTTC-CCCCCCSCCCEE--ECSSSE-------EEEEECCHHHHHHTTC
T ss_pred             ccCCCcc----------cHHHHHHHHHHHHHHhcCC-CccCCCCCCCEE--EECCCC-------eEEEeCCHHHHHHcCC
Confidence            9998542          4567999999999999963 333  4445542  222211       334443221       


Q ss_pred             cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHH-hhHHHHHHhCCCCCC--hhhhcCCCcHHHHH
Q 010917          422 ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD--KAKLQQASSVEEAL  484 (497)
Q Consensus       422 ~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  484 (497)
                      .+..  .          ......+.+++++  +++|+|+++++..+.+ +..+..+++.+.+++  ...++.|||++|++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~  444 (458)
T 1lvl_A          365 DCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAV  444 (458)
T ss_dssp             CEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHH
T ss_pred             CEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHH
Confidence            1111  0          0112457888875  5999999986666555 445566788888876  23368899999999


Q ss_pred             HHHHccCCcc
Q 010917          485 EIARAALPVE  494 (497)
Q Consensus       485 ~~~~~~~~~~  494 (497)
                      ..|++++..+
T Consensus       445 ~~a~~~~~~~  454 (458)
T 1lvl_A          445 QEAALRALGH  454 (458)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhcc
Confidence            9998765443

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=3.7e-41  Score=344.52  Aligned_cols=397  Identities=19%  Similarity=0.264  Sum_probs=272.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-Ccccc---------------CCCCCCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYL---------------FPLDKKPARLP  121 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~---~~l-~~~~l---------------~~~~~~~~~~~  121 (497)
                      +||+||||||||++||..|++.|+   +|+|||+++......   ... ++.++               ........++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~   78 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGM---KVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP   78 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCC---eEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence            689999999999999999999987   899999986432100   000 00000               00000000000


Q ss_pred             CCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEEC-CCcEEEeccEEeccCCCCCcCCCCCCCCCCcE
Q 010917          122 GFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGV  197 (497)
Q Consensus       122 ~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv  197 (497)
                      .+....   .......+..++++.+++++.++. ..++  .+.+.+. +|.++.||+||+|||+.|.. |+.++.+..++
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~-~~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~-~~~~g~~~~~v  154 (455)
T 2yqu_A           79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTA-RFLS--ERKVLVEETGEELEARYILIATGSAPLI-PPWAQVDYERV  154 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCE-EESS--SSEEEETTTCCEEEEEEEEECCCEEECC-CTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEec--CCeEEEeeCCEEEEecEEEECCCCCCCC-CCCCCCCcCcE
Confidence            000000   000000013455667999998754 3344  3445443 56789999999999998864 44445333333


Q ss_pred             EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEc
Q 010917          198 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                      .+      .+.+......+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++
T Consensus       155 ~~------~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~  227 (455)
T 2yqu_A          155 VT------STEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGLTIRT  227 (455)
T ss_dssp             EC------HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTCEEEC
T ss_pred             ec------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCCCEEEE
Confidence            32      2333332335799999999999999999999999999999999998874 7899999999999999999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccc
Q 010917          278 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA  354 (497)
Q Consensus       278 ~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~  354 (497)
                      +++|++++..+ +. ..+.+.+|+++++|.||+|+|.+|+.++  ++.+++..+ +|++.||++++|+.|+|||+|||+.
T Consensus       228 ~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~  305 (455)
T 2yqu_A          228 GVRVTAVVPEA-KG-ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVR  305 (455)
T ss_dssp             SCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSS
T ss_pred             CCEEEEEEEeC-CE-EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCC
Confidence            99999998643 22 3567778889999999999999999887  678888865 4779999999999999999999997


Q ss_pred             cCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccccCCCCcceeeEEeecCCC-------cEEE
Q 010917          355 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE  425 (497)
Q Consensus       355 ~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~~  425 (497)
                      .+.          .+..|..||+.+|.+|++. ...  +...|+  ...++..       +..+|....       ++..
T Consensus       306 ~~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~--~~~~~~~-------~a~~G~~~~~a~~~g~~~~~  365 (455)
T 2yqu_A          306 GPM----------LAHKASEEGIAAVEHMVRG-FGHVDYQAIPS--VVYTHPE-------IAAVGYTEEELKAQGIPYKV  365 (455)
T ss_dssp             SCC----------CHHHHHHHHHHHHHHHHHS-CCCCCGGGCCE--EECSSSE-------EEEEECCHHHHHHHTCCEEE
T ss_pred             Ccc----------CHHHHHHhHHHHHHHHcCC-CccCCCCCCCE--EEEcCCc-------eEEEECCHHHHHHcCCCEEE
Confidence            542          4556999999999999974 233  333453  2222221       344453321       1111


Q ss_pred             -E-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCC--hhhhcCCCcHHHHHHHHH
Q 010917          426 -I-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVEEALEIAR  488 (497)
Q Consensus       426 -~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  488 (497)
                       .           ......+.+++++  +++|+|+++++..+.++. .+..+++++.+++  ....+.|||++|++..|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~  445 (455)
T 2yqu_A          366 GKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAA  445 (455)
T ss_dssp             EEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHH
T ss_pred             EEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHH
Confidence             0           0112457788875  699999998666655544 5556688888887  234688999999999998


Q ss_pred             ccCCc
Q 010917          489 AALPV  493 (497)
Q Consensus       489 ~~~~~  493 (497)
                      +++..
T Consensus       446 ~~~~~  450 (455)
T 2yqu_A          446 LAAWE  450 (455)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            76543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.9e-41  Score=347.28  Aligned_cols=396  Identities=20%  Similarity=0.284  Sum_probs=278.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC--------------CCccccCCCCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA--------------LTKGYLFPLDKKPAR  119 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~~--------------l~~~~l~~~~~~~~~  119 (497)
                      .++||+|||||++|++||..|+++|+   +|+|||++....-  ..   |.              ....+.........+
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~---~V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGK---KVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFD   80 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcC
Confidence            35799999999999999999999998   8999999431100  00   00              000000000000000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEE-CCCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 010917          120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLP  195 (497)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~  195 (497)
                      +.......   .......+..++++.+++++.+ ++..++  .+.+.+ ++++.+.||++|+|||+.|...|.++|.+  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~--  155 (463)
T 4dna_A           81 WAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE--  155 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc--
Confidence            00000000   0000011223455679999886 565554  467777 57788999999999999876234444422  


Q ss_pred             cEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEE
Q 010917          196 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  275 (497)
Q Consensus       196 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i  275 (497)
                         ...   +.+.+......+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++
T Consensus       156 ---~~~---~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i  228 (463)
T 4dna_A          156 ---LCI---TSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAAMEEKGIRI  228 (463)
T ss_dssp             ---GCB---CHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred             ---ccc---cHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence               222   23444443456899999999999999999999999999999999998864 89999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEE-eCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEecc
Q 010917          276 VKGASIKNLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  351 (497)
Q Consensus       276 ~~~~~v~~i~~~~~~~v~~v~-~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD  351 (497)
                      ++++.|++++..+++. ..+. +.+|+ +++|.||+|+|++|++.+  ++++|++.+ +|+|.||++++|+.|+|||+||
T Consensus       229 ~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD  306 (463)
T 4dna_A          229 LCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGD  306 (463)
T ss_dssp             ECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSG
T ss_pred             ECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEe
Confidence            9999999998754444 3677 88888 999999999999999987  788898876 5779999999999999999999


Q ss_pred             ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEeecCCCc-------
Q 010917          352 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------  422 (497)
Q Consensus       352 ~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------  422 (497)
                      |+..+.          .+..|..||+.+|.||++....  .+..+|+.   .|..+      .+..+|....+       
T Consensus       307 ~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p------~~a~vG~te~~a~~~~~~  367 (463)
T 4dna_A          307 VTDRVQ----------LTPVAIHEAMCFIETEYKNNPTSPDHDLIATA---VFSQP------EIGTVGITEEEAARKFQE  367 (463)
T ss_dssp             GGSSCC----------CHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEE---ECSSS------CEEEEECCHHHHHHHSSE
T ss_pred             cCCCCC----------ChHHHHHHHHHHHHHHcCCCCcccCCCCCCEE---EECCC------CeEEecCCHHHHHHcCCC
Confidence            998432          5567999999999999975433  45556653   33322      15556654321       


Q ss_pred             E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHH
Q 010917          423 T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE  485 (497)
Q Consensus       423 ~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~  485 (497)
                      + +....           ....+.|+.++  +++|+|+++++.++.++... ..+++.+.+++ . ..++.|||++|+++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  447 (463)
T 4dna_A          368 IEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELV  447 (463)
T ss_dssp             EEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGT
T ss_pred             eEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHH
Confidence            1 11111           12347777775  48999999988877776654 45678888876 3 44699999999999


Q ss_pred             HHHcc
Q 010917          486 IARAA  490 (497)
Q Consensus       486 ~~~~~  490 (497)
                      +++..
T Consensus       448 ~~~~~  452 (463)
T 4dna_A          448 TMYQP  452 (463)
T ss_dssp             CCCSC
T ss_pred             HHhhh
Confidence            88743

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=2.4e-40  Score=341.20  Aligned_cols=398  Identities=19%  Similarity=0.241  Sum_probs=271.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc----------------------------cc
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG----------------------------YL  110 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~----------------------------~l  110 (497)
                      .++||+||||||||++||..|++.|+   +|+|||+.+..++......++                            +-
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g   81 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGK---KVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYG   81 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcC
Confidence            35899999999999999999999998   899999843322211000000                            00


Q ss_pred             CCCC-CCCCCCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCC
Q 010917          111 FPLD-KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       111 ~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~  184 (497)
                      .... ....++........   ..........+++.+++++.+ ++..++.....+.+.+|  .++.||+||||||+.|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  160 (488)
T 3dgz_A           82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPR  160 (488)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCC
Confidence            0000 00000000000000   000000112345678998864 56666655556666666  47999999999999987


Q ss_pred             cCCC-CCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHH
Q 010917          185 RFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  263 (497)
Q Consensus       185 ~~~~-~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~  263 (497)
                      . |. ++|.....    .   +++.+......+++++|||+|++|+|+|..|+++|.+|+++++.. +++ .+++++.+.
T Consensus       161 ~-p~~i~G~~~~~----~---~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~-~~d~~~~~~  230 (488)
T 3dgz_A          161 Y-PTQVKGALEYG----I---TSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PLR-GFDQQMSSL  230 (488)
T ss_dssp             C-CSSCBTHHHHC----B---CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SST-TSCHHHHHH
T ss_pred             C-CCCCCCccccc----C---cHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-ccc-cCCHHHHHH
Confidence            4 43 55532111    1   233444434467899999999999999999999999999999874 554 379999999


Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EEEcCEEEEeccCcCCCcc--hhhcCCccc--CCCEE
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQ  334 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~~D~vv~a~G~~p~~~~--~~~~gl~~~--~g~i~  334 (497)
                      +.+.++++||++++++.+.+++..+++.+ .+.+.+   |+  ++++|.||+|+|++|++++  ++.+++..+  +|+|.
T Consensus       231 l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~  309 (488)
T 3dgz_A          231 VTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKII  309 (488)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEe
Confidence            99999999999999999999986544443 344433   54  5899999999999999987  678888875  67899


Q ss_pred             ecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCccee
Q 010917          335 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVW  412 (497)
Q Consensus       335 vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~  412 (497)
                      ||+++||+.|+|||+|||+....         ..+..|..||+.+|.||++....  .|..+|+.+   |..+      .
T Consensus       310 vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~---~~~p------~  371 (488)
T 3dgz_A          310 VDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTV---FTPL------E  371 (488)
T ss_dssp             CCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE---CSSS------E
T ss_pred             ECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEE---ECCC------C
Confidence            99999999999999999985221         15567999999999999975432  456677643   2221      1


Q ss_pred             eEEeecCCCc---------E-EEEccC------------CCcEEEEEEE---CCEEEEEEeecCChHHhhHH-HHHHhCC
Q 010917          413 WQFFGDNVGE---------T-IEIGNF------------DPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQ  466 (497)
Q Consensus       413 ~~~~g~~~~~---------~-~~~~~~------------~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~~~  466 (497)
                      +..+|....+         + +....+            ...+.|+.++   +++|+|+++++.++.++... ..+|+.+
T Consensus       372 ~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  451 (488)
T 3dgz_A          372 YGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCG  451 (488)
T ss_dssp             EEEEECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             eEEEeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            4455544310         1 111000            2457777775   48999999988777776544 4567888


Q ss_pred             CCCC--hhhhcCCCcHHHHHHHHHc
Q 010917          467 PFVD--KAKLQQASSVEEALEIARA  489 (497)
Q Consensus       467 ~~~~--~~~~~~~~~~~~~~~~~~~  489 (497)
                      .+++  ...++.|||++|++..+..
T Consensus       452 ~t~~~l~~~~~~hPt~~e~~~~~~~  476 (488)
T 3dgz_A          452 ASYAQVMQTVGIHPTCSEEVVKLHI  476 (488)
T ss_dssp             CBHHHHHTSCCCSSCSTHHHHTCCE
T ss_pred             CCHHHHhccccCCCChHHHHHHHHH
Confidence            8886  3446999999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=2.6e-41  Score=348.25  Aligned_cols=390  Identities=17%  Similarity=0.145  Sum_probs=269.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------------------CCCCCCccccCCCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------------------ERPALTKGYLFPLDKKPARL  120 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-------------------~~~~l~~~~l~~~~~~~~~~  120 (497)
                      ++||+||||||||++||..|++.|+   +|+|||+++...-                   +.......+-........++
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~---~V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   84 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTD---KVVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG   84 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCS---CEEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence            4799999999999999999999998   8999999752100                   00000000000000000000


Q ss_pred             CCCccccCCCCCCCCH-----------hHHHHc-CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCC
Q 010917          121 PGFHTCVGSGGERQTP-----------EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE  188 (497)
Q Consensus       121 ~~~~~~~~~~~~~~~~-----------~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~  188 (497)
                      .   .     ...+..           ..+... +++++.+ +..-.  +.+++.+++++++.||+||||||+.|.. |.
T Consensus        85 ~---~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-~a~~~--~~~~v~~~~~~~~~~d~lViATGs~p~~-p~  152 (492)
T 3ic9_A           85 K---A-----VMKRIQTERDRFVGFVVESVESFDEQDKIRG-FAKFL--DEHTLQVDDHSQVIAKRIVIATGSRPNY-PE  152 (492)
T ss_dssp             H---H-----HHHHHHHHHHHHHHHHHHHHHHSCGGGEEES-CEEEE--ETTEEEETTTEEEEEEEEEECCCEECCC-CH
T ss_pred             H---H-----HHHHHHHHHHHHHHHHHHHHHhhcCeeEEEE-EEEEe--cCCEEEEcCCcEEEeCEEEEccCCCCcC-CC
Confidence            0   0     000000           111111 3445543 33323  3568888888899999999999999874 44


Q ss_pred             CCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHH
Q 010917          189 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY  268 (497)
Q Consensus       189 ~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l  268 (497)
                      .++...+.+.+      ++.+......+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       153 ~~~~~~~~v~t------~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l  225 (492)
T 3ic9_A          153 FLAAAGSRLLT------NDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTF  225 (492)
T ss_dssp             HHHTTGGGEEC------HHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHH
T ss_pred             CCCccCCcEEc------HHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHH
Confidence            33332333332      3444444456899999999999999999999999999999999999864 7999999999999


Q ss_pred             HHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEec-CCCC
Q 010917          269 QQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD-GQFR  340 (497)
Q Consensus       269 ~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd-~~~~  340 (497)
                      ++. |++++++++++++..++ .+ .+.+.  +|  +++++|.||+|+|++|++++  ++.++++.+ +|++.|| ++++
T Consensus       226 ~~~-V~i~~~~~v~~i~~~~~-~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~  302 (492)
T 3ic9_A          226 NEE-FYFDAKARVISTIEKED-AV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQ  302 (492)
T ss_dssp             HTT-SEEETTCEEEEEEECSS-SE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCB
T ss_pred             hhC-cEEEECCEEEEEEEcCC-EE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECccccc
Confidence            988 99999999999986533 33 35553  67  68999999999999999988  788899876 6779999 8999


Q ss_pred             CCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-CC--CCCCCCceeeeccccCCCCcceeeEEee
Q 010917          341 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFG  417 (497)
Q Consensus       341 t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~-~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g  417 (497)
                      |+.|+|||+|||+..+.          .+..|..||+.+|.+|++.. ..  .+..+|+   ..|..+      .+..+|
T Consensus       303 t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~~~~p------~~a~vG  363 (492)
T 3ic9_A          303 TSVDHIFVAGDANNTLT----------LLHEAADDGKVAGTNAGAYPVIAQGQRRAPLS---VVFTEP------QVASVG  363 (492)
T ss_dssp             CSSTTEEECGGGGTSSC----------SHHHHHHHHHHHHHHHHHTTSCCEECCCCCEE---EECSSS------EEEEEE
T ss_pred             CCCCCEEEEEecCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcccCCCCCcE---EEECCC------CeEEec
Confidence            99999999999997542          45679999999999999732 22  3344443   223211      144455


Q ss_pred             cCCCc------------E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC
Q 010917          418 DNVGE------------T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD  470 (497)
Q Consensus       418 ~~~~~------------~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~  470 (497)
                      ....+            . +..-.           ....+.++.++  +++|+|+++++.++.++... ..+++.+.+++
T Consensus       364 lte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~  443 (492)
T 3ic9_A          364 LSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQ  443 (492)
T ss_dssp             SCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred             CCHHHHHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence            43211            1 11111           12357777775  48999999988888776654 45678888876


Q ss_pred             -h-hhhcCCCcHHHHHHHHHccCCc
Q 010917          471 -K-AKLQQASSVEEALEIARAALPV  493 (497)
Q Consensus       471 -~-~~~~~~~~~~~~~~~~~~~~~~  493 (497)
                       . ..++.|||++|+++.|++++..
T Consensus       444 ~l~~~~~~hPt~~e~~~~a~~~~~~  468 (492)
T 3ic9_A          444 AMLTMPFYHPVIEEGLRTALRDAQQ  468 (492)
T ss_dssp             HHTTSCCCTTCTHHHHHHHHHHHHH
T ss_pred             HHhhCCCCCCChHHHHHHHHHHHHH
Confidence             2 4458999999999999887544

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=1.6e-40  Score=342.27  Aligned_cols=398  Identities=19%  Similarity=0.219  Sum_probs=271.0

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCC----------------------cc
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALT----------------------KG  108 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~----------------------~~  108 (497)
                      ...+||+||||||||++||..|++.|+   +|+|||+....+       +....+.                      ..
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~   83 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGA---RVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAA   83 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---EEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHh
Confidence            346899999999999999999999998   899999532111       0000000                      00


Q ss_pred             ccCCCCC-CCCCCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc-EEEeccEEeccCCCC
Q 010917          109 YLFPLDK-KPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTA  183 (497)
Q Consensus       109 ~l~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lvlAtG~~~  183 (497)
                      +-..... ...++..+.....   ..........++..+++++.+ .+..++.....+.+.+|. .+.||+||||||+.|
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p  162 (483)
T 3dgh_A           84 YGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRP  162 (483)
T ss_dssp             TTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEE
T ss_pred             cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCc
Confidence            0000000 0000000000000   000000112345678998875 566666655566666664 799999999999988


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHH
Q 010917          184 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  263 (497)
Q Consensus       184 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~  263 (497)
                      .. |.++|.+..    .   .+++.+......+++++|||+|++|+|+|..|+++|.+|+++++. .+++. +++++.+.
T Consensus       163 ~~-p~i~G~~~~----~---~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~~~~  232 (483)
T 3dgh_A          163 RY-PDIPGAVEY----G---ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQMAEL  232 (483)
T ss_dssp             CC-CSSTTHHHH----C---BCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHHHHH
T ss_pred             CC-CCCCCcccc----c---CcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHHHHH
Confidence            74 544443211    1   123344443446789999999999999999999999999999984 56654 79999999


Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeccCcCCCcch--hhcCCcccCCCEEec
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVD  336 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~~D~vv~a~G~~p~~~~~--~~~gl~~~~g~i~vd  336 (497)
                      +.+.++++||++++++.+.+++..+++.+ .+.+.+++     ++++|.||+|+|++|+++++  +.++++.++|+|.||
T Consensus       233 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd  311 (483)
T 3dgh_A          233 VAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVD  311 (483)
T ss_dssp             HHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEEC
Confidence            99999999999999999999986545544 46665543     79999999999999999886  788888877889999


Q ss_pred             CCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeE
Q 010917          337 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQ  414 (497)
Q Consensus       337 ~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~  414 (497)
                      ++++|+.|+|||+|||+....         ..+..|..||+.+|.||++...  ..|..+|+.+   |..+      .+.
T Consensus       312 ~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~---~~~p------~~a  373 (483)
T 3dgh_A          312 SQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTV---FTPL------EYA  373 (483)
T ss_dssp             TTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE---CSSS------EEE
T ss_pred             cCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEE---ECCC------ccE
Confidence            999999999999999985211         1556799999999999997543  2456677542   2211      144


Q ss_pred             EeecCCCc---------EE-EEcc------------CCCcEEEEEEE---CCEEEEEEeecCChHHhhHH-HHHHhCCCC
Q 010917          415 FFGDNVGE---------TI-EIGN------------FDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQPF  468 (497)
Q Consensus       415 ~~g~~~~~---------~~-~~~~------------~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~  468 (497)
                      .+|....+         +. ....            ....+.|+.++   +++|+|+++++.++.++... ..+++.+.+
T Consensus       374 ~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t  453 (483)
T 3dgh_A          374 CVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLT  453 (483)
T ss_dssp             EEECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCB
T ss_pred             EEeCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Confidence            45543210         11 1100            12347777664   48999999988777776544 456788888


Q ss_pred             CC--hhhhcCCCcHHHHHHHHH
Q 010917          469 VD--KAKLQQASSVEEALEIAR  488 (497)
Q Consensus       469 ~~--~~~~~~~~~~~~~~~~~~  488 (497)
                      ++  ...++.|||++|++..+.
T Consensus       454 ~~~l~~~~~~hPt~~e~~~~~~  475 (483)
T 3dgh_A          454 INTLINTVGIHPTTAEEFTRLA  475 (483)
T ss_dssp             HHHHHTSCCCSSCSGGGGGGCC
T ss_pred             HHHHhhcccCCCChHHHHHHHH
Confidence            86  344699999999998765

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=3.9e-41  Score=347.09  Aligned_cols=400  Identities=17%  Similarity=0.198  Sum_probs=253.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc------------ccC----------CCC---
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------------YLF----------PLD---  114 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~------------~l~----------~~~---  114 (497)
                      .|||+||||||||+.||..+++.|.   +|+|||+.....+......+|            ++.          ...   
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~---kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G  118 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGA---RVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG  118 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC---CEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence            4799999999999999999999998   899999865322111000000            000          000   


Q ss_pred             ----CCCCCCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEEC----CCcEEEeccEEeccCCCC
Q 010917          115 ----KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN----SGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       115 ----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~----~g~~i~~d~lvlAtG~~~  183 (497)
                          ....++........   ..........+++.+|+++.+ ...-+++..-.+...    +++.+.+|++|||||++|
T Consensus       119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G-~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P  197 (542)
T 4b1b_A          119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYING-LAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRP  197 (542)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECE-EEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred             cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-eEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCC
Confidence                00000000000000   000001123356679998875 444444433333332    335799999999999999


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHH
Q 010917          184 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  263 (497)
Q Consensus       184 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~  263 (497)
                      ..+|.+++ ....+      .+++.++.....+++++|||||++|+|+|..++++|.+||++.+. ++++. +++++...
T Consensus       198 ~~P~~~~~-~~~~~------~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~L~~-~D~ei~~~  268 (542)
T 4b1b_A          198 HIPDDVEG-AKELS------ITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IVLRG-FDQQCAVK  268 (542)
T ss_dssp             CCCSSSBT-HHHHC------BCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CSSTT-SCHHHHHH
T ss_pred             CCCCcccC-CCccc------cCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-ccccc-cchhHHHH
Confidence            75433222 11111      235666666667899999999999999999999999999999875 56664 89999999


Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCC-EEecCCC
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGG-IQVDGQF  339 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~-i~vd~~~  339 (497)
                      +.+.|++.||+++++..+.+++..+ +. ..+.+.+++++.+|.|++|+|++||++.  ++.+++..+ +++ +.+|+++
T Consensus       269 l~~~l~~~gi~~~~~~~v~~~~~~~-~~-~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~  346 (542)
T 4b1b_A          269 VKLYMEEQGVMFKNGILPKKLTKMD-DK-ILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLS  346 (542)
T ss_dssp             HHHHHHHTTCEEEETCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTS
T ss_pred             HHHHHHhhcceeecceEEEEEEecC-Ce-EEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccc
Confidence            9999999999999999999998653 33 3578889999999999999999999986  466777765 344 5789999


Q ss_pred             CCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEee
Q 010917          340 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFG  417 (497)
Q Consensus       340 ~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g  417 (497)
                      ||+.|+|||+|||+.....         ....|..+|+.++.++++....  .|..+|+.   .|..+-      +..+|
T Consensus       347 ~Ts~p~IyAiGDv~~~~p~---------La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~---vft~Pe------iA~VG  408 (542)
T 4b1b_A          347 CTNIPSIFAVGDVAENVPE---------LAPVAIKAGEILARRLFKDSDEIMDYSYIPTS---IYTPIE------YGACG  408 (542)
T ss_dssp             BCSSTTEEECTTSBTTCCC---------CHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEE---ECSSSC------EEEEE
T ss_pred             cccCCCeEEeccccCCchh---------HHHHHHHHHHHHHHHHhcCCCcccCCCCCceE---EeCCCC------eEEEe
Confidence            9999999999999964211         3345889999999999975543  46667763   343321      34444


Q ss_pred             cCCCc---------E-EEEc--------------------------cCCCcEEEEEE-E--CCEEEEEEeecCChHHhhH
Q 010917          418 DNVGE---------T-IEIG--------------------------NFDPKIATFWI-D--SGKLKGVLVESGSPEEFQL  458 (497)
Q Consensus       418 ~~~~~---------~-~~~~--------------------------~~~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~  458 (497)
                      ....+         + +...                          .....|.++.. +  +++|+|+++++.++.++..
T Consensus       409 lTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~  488 (542)
T 4b1b_A          409 YSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQ  488 (542)
T ss_dssp             CCHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHH
T ss_pred             CCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence            43210         0 0000                          00124556553 3  4899999998888888775


Q ss_pred             HHH-HHhCCCCCC--hhhhcCCCcHHHHHHHHHccCC
Q 010917          459 LPT-LARSQPFVD--KAKLQQASSVEEALEIARAALP  492 (497)
Q Consensus       459 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  492 (497)
                      .-. +|+.+.+++  ...++.|||++|+++++..++.
T Consensus       489 ~~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~  525 (542)
T 4b1b_A          489 GMALALRLKVKKKDFDNCIGIHPTDAESFMNLFVTIS  525 (542)
T ss_dssp             HHHHHHHTCCBHHHHHHC-------------------
T ss_pred             HHHHHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHH
Confidence            544 578888876  3446999999999999877653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=1.8e-40  Score=344.05  Aligned_cols=400  Identities=19%  Similarity=0.238  Sum_probs=270.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccc-c-------------------------C
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY-L-------------------------F  111 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~-l-------------------------~  111 (497)
                      +..+||+||||||||++||..|++.|+   +|+|||+++..+........+. +                         +
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~  106 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGK---KVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY  106 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence            345899999999999999999999998   8999999652221100000000 0                         0


Q ss_pred             C--C-CCCCCCCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCC
Q 010917          112 P--L-DKKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTA  183 (497)
Q Consensus       112 ~--~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~  183 (497)
                      +  . .....++........   ..........++..+++++.+ .+..+++....+...+|+  ++.||+||||||+.|
T Consensus       107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p  185 (519)
T 3qfa_A          107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP  185 (519)
T ss_dssp             TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence            0  0 000000000000000   000000112345679999875 677778766667666664  799999999999988


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHH
Q 010917          184 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  263 (497)
Q Consensus       184 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~  263 (497)
                      .. |.++|...    ...   +.+.+......+++++|||+|++|+|+|..|+++|.+||++++. .+++. +++++.+.
T Consensus       186 ~~-p~i~G~~~----~~~---t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~  255 (519)
T 3qfa_A          186 RY-LGIPGDKE----YCI---SSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANK  255 (519)
T ss_dssp             CC-CCCTTHHH----HCB---CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHHHHH
T ss_pred             CC-CCCCCccC----ceE---cHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHHHHHH
Confidence            74 44444211    111   23344443446788999999999999999999999999999985 56654 79999999


Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCC---CcE-EEEEeCCC-c--EEEcCEEEEeccCcCCCcc--hhhcCCccc--CCC
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSD---GRV-AAVKLEDG-S--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGG  332 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~---~~v-~~v~~~~g-~--~i~~D~vv~a~G~~p~~~~--~~~~gl~~~--~g~  332 (497)
                      +.+.+++.||++++++.+++++..++   +.+ ..+...+| +  ++++|.|++|+|++|++++  ++.++++.+  +|+
T Consensus       256 ~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~  335 (519)
T 3qfa_A          256 IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGK  335 (519)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCC
T ss_pred             HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCe
Confidence            99999999999999988887765322   322 22334555 2  5789999999999999986  678888874  578


Q ss_pred             EEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcc
Q 010917          333 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRK  410 (497)
Q Consensus       333 i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~  410 (497)
                      |.||+++||+.|+|||+|||+...         ...+..|..||+.+|.||++....  .|..+|+.   .|..+     
T Consensus       336 I~Vd~~~~Ts~~~IyA~GD~~~g~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p-----  398 (519)
T 3qfa_A          336 IPVTDEEQTNVPYIYAIGDILEDK---------VELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTT---VFTPL-----  398 (519)
T ss_dssp             BCCCTTSBCSSTTEEECGGGBSSS---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE---ECSSS-----
T ss_pred             EeeCCCCccCCCCEEEEEeccCCC---------CccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEE---EECCC-----
Confidence            999999999999999999999422         125667999999999999975432  45556652   23221     


Q ss_pred             eeeEEeecCCCc---------EEE-Ec------------cCCCcEEEEEEE---CCEEEEEEeecCChHHhhH-HHHHHh
Q 010917          411 VWWQFFGDNVGE---------TIE-IG------------NFDPKIATFWID---SGKLKGVLVESGSPEEFQL-LPTLAR  464 (497)
Q Consensus       411 ~~~~~~g~~~~~---------~~~-~~------------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~-~~~~~~  464 (497)
                       .+..+|....+         +.. ..            .....+.|+.++   +++|+|+++++.++.++.. +..+|+
T Consensus       399 -~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~  477 (519)
T 3qfa_A          399 -EYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK  477 (519)
T ss_dssp             -CEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             -ceEEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence             14556654321         111 10            012457787775   3899999987777766554 455678


Q ss_pred             CCCCCC--hhhhcCCCcHHHHHHHHHc
Q 010917          465 SQPFVD--KAKLQQASSVEEALEIARA  489 (497)
Q Consensus       465 ~~~~~~--~~~~~~~~~~~~~~~~~~~  489 (497)
                      .+.+++  ...++.|||++|+++++..
T Consensus       478 ~~~t~~~l~~~~~~hPt~~E~~~~~~~  504 (519)
T 3qfa_A          478 CGLTKKQLDSTIGIHPVCAEVFTTLSV  504 (519)
T ss_dssp             TTCBHHHHHHSCCCTTCGGGGGGGCCC
T ss_pred             CCCCHHHHhccccCCCChHHHHHHHHh
Confidence            888886  3446999999999987653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=7.6e-41  Score=344.58  Aligned_cols=395  Identities=21%  Similarity=0.262  Sum_probs=275.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC--------------CCccccCCCCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA--------------LTKGYLFPLDKKPAR  119 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~~--------------l~~~~l~~~~~~~~~  119 (497)
                      .++||+|||||+||++||..|+++|+   +|+|||++....-  ..   |.              ....+.........+
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~  101 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGK---RVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFN  101 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcC---EEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence            35799999999999999999999998   8999999531100  00   00              000000000000000


Q ss_pred             CCCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEEC-CCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 010917          120 LPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLP  195 (497)
Q Consensus       120 ~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~  195 (497)
                      +......   ............+++.+++++.+ .+..++  .+.+.+. ++..+.||++|+|||+.|...|.++|.+  
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~--  176 (484)
T 3o0h_A          102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSD--  176 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--CCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc--
Confidence            0000000   00000011223456679999986 666666  4567776 7788999999999999876234444432  


Q ss_pred             cEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEE
Q 010917          196 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  275 (497)
Q Consensus       196 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i  275 (497)
                      .+.+      .+.+......+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++
T Consensus       177 ~~~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i  249 (484)
T 3o0h_A          177 LCLT------SNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVAKGISI  249 (484)
T ss_dssp             GSBC------TTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEE
T ss_pred             cccc------HHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence            1111      2222222345899999999999999999999999999999999998875 79999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccc
Q 010917          276 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV  352 (497)
Q Consensus       276 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~  352 (497)
                      ++++.|++++..+ +.+ .+.+.+|+++++|.||+|+|++|+..+  ++.++++.+ +|+|.||++++|+.|+|||+|||
T Consensus       250 ~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~  327 (484)
T 3o0h_A          250 IYEATVSQVQSTE-NCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV  327 (484)
T ss_dssp             ESSCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGG
T ss_pred             EeCCEEEEEEeeC-CEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEec
Confidence            9999999998653 344 688899999999999999999999987  678888876 57799999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E
Q 010917          353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T  423 (497)
Q Consensus       353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~  423 (497)
                      +..+.          .+..|..||+.+|.+|++....  .|..+|+.   .|..+      .+..+|....+       +
T Consensus       328 ~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~g~~~  388 (484)
T 3o0h_A          328 TGHIQ----------LTPVAIHDAMCFVKNAFENTSTTPDYDLITTA---VFSQP------EIGTVGLSEEDALHRYKRV  388 (484)
T ss_dssp             GTSCC----------CHHHHHHHHHHHHHHHHC---CCCCCTTCCEE---ECCSS------CEEEEECCHHHHHHHCSEE
T ss_pred             CCCCc----------CHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEE---EECCC------CEEEeeCCHHHHHHcCCCE
Confidence            97432          5567999999999999975432  45556653   34322      15566655321       1


Q ss_pred             -EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHHH
Q 010917          424 -IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEI  486 (497)
Q Consensus       424 -~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~  486 (497)
                       +....           ....+.++.++  +++|+|+++++..+.++... ..+++.+.+++ . ..++.|||++|++++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  468 (484)
T 3o0h_A          389 EIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVT  468 (484)
T ss_dssp             EEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGC
T ss_pred             EEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHH
Confidence             11111           12357777765  48999999988877776644 45678888876 3 446999999999998


Q ss_pred             HHc
Q 010917          487 ARA  489 (497)
Q Consensus       487 ~~~  489 (497)
                      ++.
T Consensus       469 ~~~  471 (484)
T 3o0h_A          469 MYK  471 (484)
T ss_dssp             CCS
T ss_pred             Hhh
Confidence            774

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=1.7e-39  Score=343.25  Aligned_cols=395  Identities=16%  Similarity=0.213  Sum_probs=265.6

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccc-c-------------------------C
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY-L-------------------------F  111 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~-l-------------------------~  111 (497)
                      ...+||+||||||||++||..|++.|+   +|+|||+....+........+. +                         +
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~---~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~  181 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGA---KTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF  181 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCC---eEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC
Confidence            446899999999999999999999998   8999997422111100000000 0                         0


Q ss_pred             CCCCCCCC-C-CCCccccCCCCCCC-----------CHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEE
Q 010917          112 PLDKKPAR-L-PGFHTCVGSGGERQ-----------TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLI  176 (497)
Q Consensus       112 ~~~~~~~~-~-~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lv  176 (497)
                      +. ..+.. . ..+...     ..+           ....+...+++++.+ .+..++.....+...+|  .++.||+||
T Consensus       182 g~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lv  254 (598)
T 2x8g_A          182 GW-SLDRSKISHNWSTM-----VEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKII  254 (598)
T ss_dssp             TC-CCCGGGCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEE
T ss_pred             Cc-cccCCcCccCHHHH-----HHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEE
Confidence            00 00000 0 000000     000           011245568998864 56666655444555566  468999999


Q ss_pred             eccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc
Q 010917          177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF  256 (497)
Q Consensus       177 lAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~  256 (497)
                      ||||+.|+. |.++|.... ..      +.+.+......+++++|||+|++|+|+|..|+++|.+||++++. .+++. +
T Consensus       255 iAtGs~p~~-p~i~G~~~~-~~------~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~  324 (598)
T 2x8g_A          255 LATGERPKY-PEIPGAVEY-GI------TSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-F  324 (598)
T ss_dssp             ECCCEEECC-CSSTTHHHH-CE------EHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-S
T ss_pred             EeCCCCCCC-CCCCCcccc-eE------cHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-C
Confidence            999998874 444442111 11      12333333345789999999999999999999999999999988 56553 7


Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC-----CC---CcE-EEEEeCCCcEEE--cCEEEEeccCcCCCcc--hhh
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-----SD---GRV-AAVKLEDGSTID--ADTIVIGIGAKPTVSP--FER  323 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-----~~---~~v-~~v~~~~g~~i~--~D~vv~a~G~~p~~~~--~~~  323 (497)
                      ++++.+.+.+.+++.||++++++.+.+++..     ++   +.+ ..+.+.+|++++  +|.||+|+|++||+++  ++.
T Consensus       325 d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~  404 (598)
T 2x8g_A          325 DQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET  404 (598)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGG
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchh
Confidence            8999999999999999999999988888532     11   333 223456777655  9999999999999987  577


Q ss_pred             cCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeee
Q 010917          324 VGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSR  400 (497)
Q Consensus       324 ~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~  400 (497)
                      ++++.+ +|+|.||++++|+.|+|||+|||+...         ...+..|..||+.+|.+|+++..  ..|..+|+.+  
T Consensus       405 ~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~--  473 (598)
T 2x8g_A          405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGK---------PQLTPVAIQAGRYLARRLFAGATELTDYSNVATTV--  473 (598)
T ss_dssp             GCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTS---------CCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEE--
T ss_pred             cCceECCCCcEEeCCCCcCCCCCEEEEeeecCCC---------CccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEE--
Confidence            888875 577999999999999999999996532         11566799999999999997543  3456667543  


Q ss_pred             ccccCCCCcceeeEEeecCCC---------cEEE-E-----------c-cCCCcEEEEEEE---CCEEEEEEeecCChHH
Q 010917          401 VFEYEGSPRKVWWQFFGDNVG---------ETIE-I-----------G-NFDPKIATFWID---SGKLKGVLVESGSPEE  455 (497)
Q Consensus       401 ~~~~~g~~~~~~~~~~g~~~~---------~~~~-~-----------~-~~~~~~~~~~~~---~~~~~g~~~~~~~~~~  455 (497)
                       |...      .+..+|....         .+.. .           + +....+.++.++   +++|+|+++++..+.+
T Consensus       474 -~~~~------~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~  546 (598)
T 2x8g_A          474 -FTPL------EYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGE  546 (598)
T ss_dssp             -CSSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHH
T ss_pred             -ECCC------ceEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHH
Confidence             2211      1334553321         0111 0           0 112347777765   6999999987776766


Q ss_pred             hhH-HHHHHhCCCCCC--hhhhcCCCcHHHHHHHHHcc
Q 010917          456 FQL-LPTLARSQPFVD--KAKLQQASSVEEALEIARAA  490 (497)
Q Consensus       456 ~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  490 (497)
                      +.. +..+++.+.+++  ...++.|||++|++..++..
T Consensus       547 ~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  584 (598)
T 2x8g_A          547 ITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLHVT  584 (598)
T ss_dssp             HHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCCB
T ss_pred             HHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHHHHh
Confidence            554 455678888876  34469999999999988763

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=2.7e-40  Score=340.08  Aligned_cols=298  Identities=21%  Similarity=0.279  Sum_probs=225.8

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      .+.+++|||||||+||+++|..|++.++   +|||||+++++.|. |.|+. ...+ ...+..+           ...+.
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~---~VtLId~~~~~~~~-PlL~~-va~G-~l~~~~i-----------~~p~~  101 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKKY---NVSIISPRSYFLFT-PLLPS-APVG-TVDEKSI-----------IEPIV  101 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTTC---EEEEEESSSEEECG-GGGGG-TTTT-SSCGGGG-----------EEEHH
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCCC---cEEEECCCCCcccc-cchhH-Hhhc-cccHHHh-----------hhhHH
Confidence            4556899999999999999999988776   89999999987664 54432 1111 0001100           01112


Q ss_pred             hHH--HHcCcEEEeCCcEEEEecCCCEEEEC--------------------CCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 010917          137 EWY--KEKGIEMIYQDPVTSIDIEKQTLITN--------------------SGKLLKYGSLIVATGCTASRFPEKIGGYL  194 (497)
Q Consensus       137 ~~~--~~~~v~~~~~~~v~~i~~~~~~v~~~--------------------~g~~i~~d~lvlAtG~~~~~~~~~~g~~~  194 (497)
                      ...  .+.+++++. .+|+.||++.++|++.                    ++.++.||+||||||+.+.. +.+||.. 
T Consensus       102 ~~~~~~~~~v~~~~-~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~-~~ipG~~-  178 (502)
T 4g6h_A          102 NFALKKKGNVTYYE-AEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT-FGIPGVT-  178 (502)
T ss_dssp             HHHTTCSSCEEEEE-EEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC-TTCTTHH-
T ss_pred             HHHHhhcCCeEEEE-EEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc-CCccCcc-
Confidence            222  234788887 4899999999988763                    35689999999999999874 4445532 


Q ss_pred             CcEEEecCHHHHHHHHHhhc-----------------cCCeEEEEcCCHHHHHHHHHHHhCC--------------CcEE
Q 010917          195 PGVHYIRDVADADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------LDTT  243 (497)
Q Consensus       195 ~gv~~~~~~~~~~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~Vt  243 (497)
                      +..+.++++.++..+++.+.                 ...+++|||+|++|+|+|..|++++              .+|+
T Consensus       179 e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~  258 (502)
T 4g6h_A          179 DYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIH  258 (502)
T ss_dssp             HHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEE
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeE
Confidence            23467788888776654321                 1247999999999999999987643              5799


Q ss_pred             EEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc----EEEcCEEEEeccCcCCC-
Q 010917          244 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTV-  318 (497)
Q Consensus       244 lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~----~i~~D~vv~a~G~~p~~-  318 (497)
                      ++++.+++++. +++++++.+++.|+++||+++++++|++++.  ++.+......||+    ++++|.||||+|.+|+. 
T Consensus       259 lve~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~  335 (502)
T 4g6h_A          259 LVEALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPV  335 (502)
T ss_dssp             EECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHH
T ss_pred             EeccccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHH
Confidence            99999999985 8999999999999999999999999999973  4444455666763    69999999999999983 


Q ss_pred             --cchhhcCCccc-CCCEEecCCCCC-CCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          319 --SPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       319 --~~~~~~gl~~~-~g~i~vd~~~~t-~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                        ++...+++..+ +|+|.||++||| ++|||||+|||+..+.++        ..+.|.+||+.+|+||.+
T Consensus       336 ~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~--------~a~~A~qqg~~~A~ni~~  398 (502)
T 4g6h_A          336 ITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPP--------TAQVAHQEAEYLAKNFDK  398 (502)
T ss_dssp             HHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCC--------chHHHHHHHHHHHHHHHH
Confidence              23445555543 578999999999 899999999999876543        566799999999999954

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=6.4e-40  Score=332.97  Aligned_cols=330  Identities=18%  Similarity=0.167  Sum_probs=236.6

Q ss_pred             EeecccccccCccccc--CCCCccccc---CCCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHHHHH
Q 010917           12 SVSNSLSFKHGLSLWC--PQSPSLHRI---RHSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAAR   77 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~aA~   77 (497)
                      ..+||||..||+.|+.  +|..+|.+.   ..++++..++++..+.         ..+.....++|+||||||||++||.
T Consensus        60 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~  139 (456)
T 2vdc_G           60 QATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAE  139 (456)
T ss_dssp             HHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHH
T ss_pred             HhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHH
Confidence            3579999999999999  999999885   4788888877765321         1112345789999999999999999


Q ss_pred             HHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEec
Q 010917           78 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI  157 (497)
Q Consensus        78 ~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~  157 (497)
                      .|++.|+   +|+|||+++.....   +.  +..+....+..+           ..+..+++++.|+++++++.+.    
T Consensus       140 ~L~~~G~---~V~v~e~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          140 ELRAKGY---EVHVYDRYDRMGGL---LV--YGIPGFKLEKSV-----------VERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             HHHHHTC---CEEEECSSSSCSTH---HH--HTSCTTTSCHHH-----------HHHHHHHHHHTTCEEETTCCBT----
T ss_pred             HHHHCCC---eEEEEeccCCCCCe---ee--ecCCCccCCHHH-----------HHHHHHHHHHCCcEEEeCCEec----
Confidence            9999998   89999998654210   00  101111111000           1234567788899999987652    


Q ss_pred             CCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH--H----------hhccCCeEEEEcCC
Q 010917          158 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--S----------SLEKAKKVVVVGGG  225 (497)
Q Consensus       158 ~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~--~----------~~~~~~~vvVvG~G  225 (497)
                        +.+.++++. +.||+||||||+.+...+.++|.+.+++++..++.......  .          ....+++|+|||+|
T Consensus       197 --~~v~~~~~~-~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG  273 (456)
T 2vdc_G          197 --RDASLPELR-RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG  273 (456)
T ss_dssp             --TTBCHHHHH-SSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSS
T ss_pred             --cEEEhhHhH-hhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCC
Confidence              223333332 57999999999974334567787778887654333322211  1          11357899999999


Q ss_pred             HHHHHHHHHHHhCCCc-EEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe------
Q 010917          226 YIGMEVAAAAVGWKLD-TTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------  297 (497)
Q Consensus       226 ~~g~e~A~~l~~~g~~-Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~------  297 (497)
                      ++|+|+|..+.+.|.+ |+++++.+.. ++. .+.+     .+.+++.||++++++.++++..  ++++..+.+      
T Consensus       274 ~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~  345 (456)
T 2vdc_G          274 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLG  345 (456)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEec
Confidence            9999999999999984 9999998865 442 2222     2457888999999999998874  343322221      


Q ss_pred             ---C---------CC--cEEEcCEEEEeccCcCCCc--chhhcCCccc-CCCEEecCC-CCCCCCcEEEeccccccCCcc
Q 010917          298 ---E---------DG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKM  359 (497)
Q Consensus       298 ---~---------~g--~~i~~D~vv~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~  359 (497)
                         .         +|  +++++|.||+|+|+.|+..  ++++++++.+ +|+|.||++ ++|+.|+|||+|||+..+.  
T Consensus       346 ~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~--  423 (456)
T 2vdc_G          346 VADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGAS--  423 (456)
T ss_dssp             EEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCC--
T ss_pred             ccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCch--
Confidence               1         23  4799999999999999876  6888888875 688999997 9999999999999997643  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 010917          360 YDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       360 ~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                              .+..|+.+|+.+|.+|..
T Consensus       424 --------~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          424 --------LVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             --------SHHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHHHH
Confidence                    456788999999988864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.3e-38  Score=304.80  Aligned_cols=293  Identities=22%  Similarity=0.313  Sum_probs=211.0

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      +...+||+||||||||++||.+|+++|+   +|+|||++...        +.++..  .....+|++....+.++.....
T Consensus         3 te~~yDvvIIG~GpAGl~aA~~l~~~g~---~V~liE~~~~g--------G~~~~~--~~i~~~p~~~~~~~~~~~~~~~   69 (312)
T 4gcm_A            3 TEIDFDIAIIGAGPAGMTAAVYASRANL---KTVMIERGIPG--------GQMANT--EEVENFPGFEMITGPDLSTKMF   69 (312)
T ss_dssp             -CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTT--------GGGGGC--SCBCCSTTCSSBCHHHHHHHHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCC--------Ceeecc--cccCCcCCccccchHHHHHHHH
Confidence            4456999999999999999999999998   89999986321        001100  0011122222111111112234


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhh
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  213 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~  213 (497)
                      .++.+.+..+..+..+...+.........+++++.||+||||||++|+. |.+||.+.   .++.+..      ......
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~-~~ipG~~~~~~~~v~~~~------~~~~~~  142 (312)
T 4gcm_A           70 EHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKK-IGVPGEQELGGRGVSYCA------VCDGAF  142 (312)
T ss_dssp             HHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESCH------HHHGGG
T ss_pred             HHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCc-CCCCChhhhCCccEEeee------ccCccc
Confidence            4556778888887777777777778888888899999999999999874 55666543   2333321      122234


Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCc--
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR--  291 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~--  291 (497)
                      ..+|+++|||+|++|+|+|..|+++|.+||++++.+++++..      ....+.+++.++.......+..+...+...  
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQR------ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGS  216 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH------HHHHHHHHCTTEEEECSEEEEEEEEETTEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcch------hHHHHHHHhcCcceeeecceeeeecccccccc
Confidence            568999999999999999999999999999999999887631      122355678889998888777665432211  


Q ss_pred             EEEEEeC--CCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccH
Q 010917          292 VAAVKLE--DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  369 (497)
Q Consensus       292 v~~v~~~--~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~  369 (497)
                      .......  ++..+++|.|++++|.+|+..+++.+++..++|+|.||+++|||+|+|||+|||+..+..         .+
T Consensus       217 ~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~---------~~  287 (312)
T 4gcm_A          217 VTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLR---------QI  287 (312)
T ss_dssp             EEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSCC---------SH
T ss_pred             ceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcch---------HH
Confidence            1111222  335799999999999999999999999988888999999999999999999999974321         45


Q ss_pred             HHHHHHHHHHHHHHh
Q 010917          370 DHARQSAQHCIKALL  384 (497)
Q Consensus       370 ~~A~~~g~~~a~~i~  384 (497)
                      ..|..+|+.||.+|.
T Consensus       288 ~~A~~~G~~AA~~i~  302 (312)
T 4gcm_A          288 VTATGDGSIAAQSAA  302 (312)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            568889999998885

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=4.9e-38  Score=308.68  Aligned_cols=313  Identities=18%  Similarity=0.217  Sum_probs=225.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      +.++||+|||||+||+++|..|+++|+   +|+|||+++.......     ...+ .......+++.......+...+.+
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~   73 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGL---SFRFVDPLPEPGGQLT-----ALYP-EKYIYDVAGFPKVYAKDLVKGLVE   73 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCeee-----ccCC-CceeeccCCCCCCCHHHHHHHHHH
Confidence            345799999999999999999999987   8999999865421100     0000 000011111111100111122334


Q ss_pred             HHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCC---CCcCCCCCCCCC---CcEEE-ecCHHHHHH
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT---ASRFPEKIGGYL---PGVHY-IRDVADADA  208 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~---~~~~~~~~g~~~---~gv~~-~~~~~~~~~  208 (497)
                      .+++.+++++++++|+.++.+.  ..+.++++..+.||+||+|||+.   |. .+.++|...   .++++ +.+..    
T Consensus        74 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~-~~~i~g~~~~~~~~~~~~~~~~~----  148 (335)
T 2zbw_A           74 QVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPR-RIGAPGEREFEGRGVYYAVKSKA----  148 (335)
T ss_dssp             HHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEEC-CCCCTTTTTTBTTTEESSCSCGG----
T ss_pred             HHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCC-CCCCCChhhccCcEEEEecCchh----
Confidence            4566789999999999998765  35777788789999999999994   44 233444321   12332 11111    


Q ss_pred             HHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          209 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       209 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                          ...+++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+++   .+...+.+.+.+++.||++++++.|.+++.  
T Consensus       149 ----~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--  219 (335)
T 2zbw_A          149 ----EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG--  219 (335)
T ss_dssp             ----GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE--
T ss_pred             ----hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc--
Confidence                12579999999999999999999999999999999987764   356778888889999999999999999986  


Q ss_pred             CCcEEEEEeC---CC--cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcc
Q 010917          289 DGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       289 ~~~v~~v~~~---~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                      ++.+..+.+.   +|  +++++|.||+|+|++|+.+++++++++.++|++.||++++|+.|+|||+|||+..+..     
T Consensus       220 ~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-----  294 (335)
T 2zbw_A          220 DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK-----  294 (335)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC-----
T ss_pred             CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc-----
Confidence            3455456665   67  5799999999999999999999999987778999999999999999999999986532     


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeec
Q 010917          364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRV  401 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~  401 (497)
                        ...+..|..+|+.+|.+|.+.. ......|+.|+..
T Consensus       295 --~~~~~~A~~~g~~aa~~i~~~l-~~~~~~~~~~~~~  329 (335)
T 2zbw_A          295 --LPLIVLGFGEAAIAANHAAAYA-NPALKVNPGHSSE  329 (335)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHH-CTTSCSSCCCGGG
T ss_pred             --hhhhhhhHHHHHHHHHHHHHHh-hhhhccCCccccc
Confidence              2266778999999999997532 2233344444443

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=3.9e-38  Score=312.57  Aligned_cols=316  Identities=21%  Similarity=0.305  Sum_probs=221.7

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      +.++||+|||||+||+++|..|++.|+   +|+|||+.+.......     ...+ .......+++.......+...+.+
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~   82 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNI---SCRIIESMPQLGGQLA-----ALYP-EKHIYDVAGFPEVPAIDLVESLWA   82 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccc-----ccCC-CcccccCCCCCCCCHHHHHHHHHH
Confidence            345799999999999999999999987   8999999865421000     0000 000011111111100111122334


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCCC---CCcCCCCCC-C-CCC--cEEEe-cCHHHH
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT---ASRFPEKIG-G-YLP--GVHYI-RDVADA  206 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~~---~~~~~~~~g-~-~~~--gv~~~-~~~~~~  206 (497)
                      .+++.+++++++++|+.++....   .+.+.+++.+.||+||+|||+.   |. .+.++| . ...  ++++. ++..  
T Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~-~~~i~g~~~~~~~~~v~~~~~~~~--  159 (360)
T 3ab1_A           83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPR-KLPQLGNIDHLTGSSVYYAVKSVE--  159 (360)
T ss_dssp             HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBC-CCGGGCCCTTTBTTTEESSCSCGG--
T ss_pred             HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCC-CCCCCCchhhCcCceEEEecCCHH--
Confidence            45667899999999999987643   6888888889999999999994   43 233445 2 222  24322 1111  


Q ss_pred             HHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          207 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       207 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                            ...+++|+|||+|.+|+|+|..|.+.+.+|+++++.+.+.+.   +...+.+.+.+++.||+++++++|.+++.
T Consensus       160 ------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~~~~~~l~~~~~~~gv~i~~~~~v~~i~~  230 (360)
T 3ab1_A          160 ------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVYLETEVASIEE  230 (360)
T ss_dssp             ------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---SHHHHSSHHHHHHTSEEEESSEEEEEEEE
T ss_pred             ------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---HHHHHHHHHHhhcCceEEEcCcCHHHhcc
Confidence                  125799999999999999999999999999999999877652   35667778888999999999999999986


Q ss_pred             CCCCcEEEEEeC--CC--cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCc
Q 010917          287 GSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR  362 (497)
Q Consensus       287 ~~~~~v~~v~~~--~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~  362 (497)
                      . ++++..+.+.  +|  +++++|.||+|+|++|+.++++.+++..++|++.||++++|+.|+|||+|||+..+..    
T Consensus       231 ~-~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----  305 (360)
T 3ab1_A          231 S-NGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK----  305 (360)
T ss_dssp             E-TTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC----
T ss_pred             C-CCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc----
Confidence            4 4555556664  77  5799999999999999999999999887778999999999999999999999986532    


Q ss_pred             ccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeecc
Q 010917          363 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVF  402 (497)
Q Consensus       363 ~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~  402 (497)
                         ...+..|..||..+|.+|.+.........+++|+..+
T Consensus       306 ---~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~~~~~~  342 (360)
T 3ab1_A          306 ---LKIIQTGLSEATMAVRHSLSYIKPGEKIRNVFSSVKM  342 (360)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred             ---cceeehhHHHHHHHHHHHHhhcCCccccCceeccchh
Confidence               2266779999999999997532222222445555444

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=100.00  E-value=2.9e-38  Score=350.54  Aligned_cols=348  Identities=17%  Similarity=0.169  Sum_probs=244.5

Q ss_pred             EeecccccccCccccc--CCCCcccccC---CCCchhhhcccccccc---------cc--------cCCCCCcEEEEcCc
Q 010917           12 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY---------SS--------FANENREFVIVGGG   69 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~--------~~~~~~~VvIIGgG   69 (497)
                      ..+||||..||++|+.  +|..+|.+..   .++++..++++..+..         .+        +....+||+|||||
T Consensus       117 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgG  196 (1025)
T 1gte_A          117 FSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAG  196 (1025)
T ss_dssp             HHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCS
T ss_pred             HhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECcc
Confidence            3579999999999887  8999999843   7899988887765420         11        11236799999999


Q ss_pred             hHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeC
Q 010917           70 NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQ  149 (497)
Q Consensus        70 ~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (497)
                      |||++||..|+++|+.  +|+|||+++.....   +.  +..+....+..           ...+..+++++.||+++++
T Consensus       197 pAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG~---~~--~~ip~~~~~~~-----------~~~~~~~~~~~~gv~~~~~  258 (1025)
T 1gte_A          197 PASISCASFLARLGYS--DITIFEKQEYVGGL---ST--SEIPQFRLPYD-----------VVNFEIELMKDLGVKIICG  258 (1025)
T ss_dssp             HHHHHHHHHHHHTTCC--CEEEEESSSSCSTH---HH--HTSCTTTSCHH-----------HHHHHHHHHHTTTCEEEES
T ss_pred             HHHHHHHHHHHhcCCC--cEEEEeCCCCCCcc---cc--ccCCcccCCHH-----------HHHHHHHHHHHCCcEEEcc
Confidence            9999999999999982  69999998653211   00  00110000000           0122346678889999998


Q ss_pred             CcEEEEecCCCEEEECCCcEEEeccEEeccCCC-CCcCCCCCCCC-CCcEEEecCHHHHHHHHHh----------hccCC
Q 010917          150 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGY-LPGVHYIRDVADADALISS----------LEKAK  217 (497)
Q Consensus       150 ~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~-~~gv~~~~~~~~~~~~~~~----------~~~~~  217 (497)
                      +.+.     .+.++++++..+.||+||||||+. |+.++.++|.. .+++++..++.........          ...++
T Consensus       259 ~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~  333 (1025)
T 1gte_A          259 KSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRG  333 (1025)
T ss_dssp             CCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCS
T ss_pred             cEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCC
Confidence            7652     133445555557899999999994 76554434432 4577664333221111100          12367


Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  295 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v  295 (497)
                      +|+|||||++|+|+|..+.++|. +||++++.+. +++ .+++++     +.+++.||++++++.++++... ++++..+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~-~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v  406 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEEV-----ELAKEEKCEFLPFLSPRKVIVK-GGRIVAV  406 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHHH-----HHHHHTTCEEECSEEEEEEEEE-TTEEEEE
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCC-CCHHHH-----HHHHHcCCEEEeCCCceEEEcc-CCeEEEE
Confidence            99999999999999999999996 8999999884 333 234333     4578899999999999999753 5666555


Q ss_pred             EeC------CC---------cEEEcCEEEEeccCcCC-Ccchhh-cCCccc-CCCEEecC-CCCCCCCcEEEeccccccC
Q 010917          296 KLE------DG---------STIDADTIVIGIGAKPT-VSPFER-VGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFP  356 (497)
Q Consensus       296 ~~~------~g---------~~i~~D~vv~a~G~~p~-~~~~~~-~gl~~~-~g~i~vd~-~~~t~~~~iya~GD~~~~~  356 (497)
                      ++.      +|         +++++|.||+|+|++|+ ..++.+ .|++.+ +|+|.||+ +++|+.|+|||+|||+..+
T Consensus       407 ~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~  486 (1025)
T 1gte_A          407 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA  486 (1025)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC
T ss_pred             EEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCc
Confidence            542      22         36999999999999864 556666 478776 57799997 8999999999999999854


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHHhc------CC-CCCCCCCCceee
Q 010917          357 LKMYDRTARVEHVDHARQSAQHCIKALLS------AQ-THTYDYLPYFYS  399 (497)
Q Consensus       357 ~~~~g~~~~~~~~~~A~~~g~~~a~~i~~------~~-~~~~~~~p~~~~  399 (497)
                      .          .+..|..+|+.||.+|.+      +. ...++..||+|+
T Consensus       487 ~----------~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~  526 (1025)
T 1gte_A          487 N----------TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYT  526 (1025)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCC
T ss_pred             h----------HHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccc
Confidence            3          345588889999988863      22 224678999999

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=1.6e-37  Score=304.43  Aligned_cols=292  Identities=17%  Similarity=0.234  Sum_probs=215.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      ++||+|||||+||++||..|++.|+   +|+|||+++.......     ...+ ......++++..........++.+.+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gG~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQA---SVKIIESLPQLGGQLS-----ALYP-EKYIYDVAGFPKIRAQELINNLKEQM   77 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HHCT-TSEECCSTTCSSEEHHHHHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCCceeh-----hcCC-CceEeccCCCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999987   8999999875431000     0000 00001122211111111122334555


Q ss_pred             HHcCcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCC---CCCcCCCCCCCCC---CcEEEecCHHHHHHHH
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC---TASRFPEKIGGYL---PGVHYIRDVADADALI  210 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~---~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~  210 (497)
                      ++.+++++++++|+.++...+   .+.+++++ +.||+||+|||+   .|. .+.++|...   ..+++  .+.+..   
T Consensus        78 ~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~-~~~~~g~~~~~g~~~~~--~~~~~~---  150 (332)
T 3lzw_A           78 AKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR-KLELENAEQYEGKNLHY--FVDDLQ---  150 (332)
T ss_dssp             TTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC-CCCCTTGGGGBTTTEES--SCSCGG---
T ss_pred             HHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC-CCCCCChhhccCceEEE--ecCCHH---
Confidence            667999999999999998766   78888876 999999999999   665 344455432   23332  112211   


Q ss_pred             HhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC
Q 010917          211 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  290 (497)
Q Consensus       211 ~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~  290 (497)
                        ...+++++|||+|.+|+|+|..|++.+.+|+++++.+.+.+.  ++     ..+.+++.||++++++.+.+++.+++ 
T Consensus       151 --~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~--~~-----~~~~l~~~gv~~~~~~~v~~i~~~~~-  220 (332)
T 3lzw_A          151 --KFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH--EH-----SVENLHASKVNVLTPFVPAELIGEDK-  220 (332)
T ss_dssp             --GGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC--HH-----HHHHHHHSSCEEETTEEEEEEECSSS-
T ss_pred             --HcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc--HH-----HHHHHhcCCeEEEeCceeeEEecCCc-
Confidence              125899999999999999999999999999999999877542  22     23447899999999999999985432 


Q ss_pred             cEEEEEeCC-----CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917          291 RVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  365 (497)
Q Consensus       291 ~v~~v~~~~-----g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~  365 (497)
                       +..+.+.+     ++++++|.||+|+|++|+.++++.+++..++|++.||++++|+.|+|||+|||+..+..       
T Consensus       221 -~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------  292 (332)
T 3lzw_A          221 -IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK-------  292 (332)
T ss_dssp             -CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC-------
T ss_pred             -eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC-------
Confidence             33555554     45799999999999999999999999988888999999999999999999999975432       


Q ss_pred             cccHHHHHHHHHHHHHHHhc
Q 010917          366 VEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       366 ~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ...+..|..+|+.+|.+|+.
T Consensus       293 ~~~~~~A~~~g~~aa~~i~~  312 (332)
T 3lzw_A          293 VNLIASGFGEAPTAVNNAKA  312 (332)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH
T ss_pred             cceEeeehhhHHHHHHHHHH
Confidence            22667799999999999875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=9.8e-37  Score=297.52  Aligned_cols=289  Identities=21%  Similarity=0.247  Sum_probs=213.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      ++||+|||||+||++||..|+++|+   +|+|||++ ....        +..  ......++++..........++.+++
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~-~gg~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYML---KTLVIGET-PGGQ--------LTE--AGIVDDYLGLIEIQASDMIKVFNKHI   80 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESS-TTGG--------GGG--CCEECCSTTSTTEEHHHHHHHHHHHH
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCC---cEEEEecc-CCCe--------ecc--cccccccCCCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999999998   79999997 1100        000  00011111111111111122334556


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhhc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE  214 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~  214 (497)
                      ++.+++++. ++|+.++.+..  .+.++++..+.||+||+|||+.|. .+.+++...   +++++..      .......
T Consensus        81 ~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~~~~~~~~~------~~~~~~~  152 (323)
T 3f8d_A           81 EKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR-KLGVPGEQEFAGRGISYCS------VADAPLF  152 (323)
T ss_dssp             HTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC-CCCCTTTTTTBTTTEESCH------HHHGGGG
T ss_pred             HHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc-cCCCCchhhhcCCceEEec------cCCHhHc
Confidence            678999998 89999987643  677888888999999999999976 455566443   4554321      1122345


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++++|+|+|.+|+|+|..|.+.|.+|+++++.+.+++   ++.   .+.+.+++.||++++++++++++.+  +.+..
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~  224 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVLNSVVKEIKGD--KVVKQ  224 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES--SSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEeCCEEEEEecc--CceeE
Confidence            689999999999999999999999999999999988765   332   2333344559999999999999854  45556


Q ss_pred             EEeCC---Cc--EEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCccccccc
Q 010917          295 VKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  368 (497)
Q Consensus       295 v~~~~---g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~  368 (497)
                      +.+.+   |+  ++++|.||+++|++|+.++++.++++.+ +|++.||++++|+.|+|||+|||+..+..       ...
T Consensus       225 v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~  297 (323)
T 3f8d_A          225 VVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLG-------FRQ  297 (323)
T ss_dssp             EEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTTT-------CCC
T ss_pred             EEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCCc-------ccc
Confidence            66665   76  7999999999999999999999998865 68899999999999999999999986410       226


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 010917          369 VDHARQSAQHCIKALLS  385 (497)
Q Consensus       369 ~~~A~~~g~~~a~~i~~  385 (497)
                      +..|..+|+.+|.+|..
T Consensus       298 ~~~A~~~g~~aa~~i~~  314 (323)
T 3f8d_A          298 VITAVAQGAVAATSAYR  314 (323)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             eeehhhHHHHHHHHHHH
Confidence            67788999999988853

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=7.1e-37  Score=297.59  Aligned_cols=298  Identities=20%  Similarity=0.225  Sum_probs=203.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccc-cCCCCCCCCHh
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTPE  137 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~  137 (497)
                      +.+||+||||||||++||..|+++|+   +|+|||++......   + .+.+.. .....++++++.. .+.++..+..+
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~---~v~liE~~~~gg~~---~-~G~~~~-~~~i~~~~g~~~~i~~~~l~~~~~~   74 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSL---KPVMYEGFMAGGVA---A-GGQLTT-TTIIENFPGFPNGIDGNELMMNMRT   74 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSGGGCC---T-TCGGGG-SSEECCSTTCTTCEEHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCcc---c-CCCcCC-hHHhhhccCCcccCCHHHHHHHHHH
Confidence            45899999999999999999999998   89999987532110   0 011111 1111222332211 11111223345


Q ss_pred             HHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhcc
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  215 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  215 (497)
                      .+++.++++... .+.......  ..+.+.++.++.||+||||||+.|+. |.+||.+.............+. ......
T Consensus        75 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~-~~ipG~~~~~~~~~~~~~~~~~-~~~~~~  151 (314)
T 4a5l_A           75 QSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR-MHVPGEDKYWQNGVSACAICDG-AVPIFR  151 (314)
T ss_dssp             HHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC-CCCTTHHHHBTTTEESCHHHHT-TSGGGT
T ss_pred             HHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccc-cCCCccccccccceeeehhhhh-hhhhcC
Confidence            566778888764 566655443  46777888899999999999999874 5556643221111111122222 122346


Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  295 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v  295 (497)
                      +++++|||+|++|+|+|..|+++|.+||++++.+.+..   .+.   ...+.+...+++.+....+.++... +.....+
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~  224 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIEVIWNSELVELEGD-GDLLNGA  224 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES-SSSEEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhcccceeeEeeeeeEEEEee-eecccee
Confidence            89999999999999999999999999999998876543   222   2334556778999999988888754 3333333


Q ss_pred             Ee-----CCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHH
Q 010917          296 KL-----EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  370 (497)
Q Consensus       296 ~~-----~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~  370 (497)
                      .+     .+++++++|.|++++|++||++++... +..+++++.||+++|||.|+|||+|||+..+..         .+.
T Consensus       225 ~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~-~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~~---------~~~  294 (314)
T 4a5l_A          225 KIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQ-VKTADDGYILTEGPKTSVDGVFACGDVCDRVYR---------QAI  294 (314)
T ss_dssp             EEEETTTCCEEEEECSEEEECSCEEESCGGGTTS-SCBCTTSCBCCBTTBCSSTTEEECSTTTCSSCC---------CHH
T ss_pred             EEeecccccceeeccccceEecccccChhHhccc-ceEcCCeeEeCCCCccCCCCEEEEEeccCCcch---------HHH
Confidence            32     345689999999999999999998654 445555666999999999999999999986532         334


Q ss_pred             HHHHHHHHHHHHHh
Q 010917          371 HARQSAQHCIKALL  384 (497)
Q Consensus       371 ~A~~~g~~~a~~i~  384 (497)
                      .|..+|+.||.++.
T Consensus       295 ~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          295 VAAGSGCMAALSCE  308 (314)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            57778888887764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.8e-36  Score=294.11  Aligned_cols=288  Identities=24%  Similarity=0.275  Sum_probs=210.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..+||+|||||+||++||..|++.|+   +|+|||+.....  .      +....  ....++++....+......+.++
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg--~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   81 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGF---SVAILDKAVAGG--L------TAEAP--LVENYLGFKSIVGSELAKLFADH   81 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTG--G------GGGCS--CBCCBTTBSSBCHHHHHHHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCc--c------ccccc--hhhhcCCCcccCHHHHHHHHHHH
Confidence            45799999999999999999999997   899999953210  0      00000  00011111000000011223445


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhh
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  213 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~  213 (497)
                      +++.+++++. .+|..++...+  .+.+ ++..+.||+||+|||+.+. .+.+++.+.   .++++...      .....
T Consensus        82 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~-~~~i~g~~~~~~~~~~~~~~------~~~~~  152 (319)
T 3cty_A           82 AANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK-HLGVKGESEYFGKGTSYCST------CDGYL  152 (319)
T ss_dssp             HHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCHH------HHGGG
T ss_pred             HHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc-cCCCCChHHhCCceEEEEEe------cchhh
Confidence            5667999988 68999987665  4555 5567999999999999876 344555321   34443321      11234


Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   ++    .+.+.+++.||+++++++++++..+ ++++.
T Consensus       153 ~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~----~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~  224 (319)
T 3cty_A          153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---EN----AYVQEIKKRNIPYIMNAQVTEIVGD-GKKVT  224 (319)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CH----HHHHHHHHTTCCEECSEEEEEEEES-SSSEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CH----HHHHHHhcCCcEEEcCCeEEEEecC-CceEE
Confidence            5689999999999999999999999999999999887642   33    3445567899999999999999864 44455


Q ss_pred             EEEeC---CCc--EEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccc
Q 010917          294 AVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  367 (497)
Q Consensus       294 ~v~~~---~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~  367 (497)
                      .+.+.   +|+  ++++|.||+|+|++|+.+++++++++.+ +|+|.||++++|+.|+|||+|||+..+..         
T Consensus       225 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---------  295 (319)
T 3cty_A          225 GVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA---------  295 (319)
T ss_dssp             EEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCCC---------
T ss_pred             EEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcchh---------
Confidence            66664   665  6999999999999999999999888765 58899999999999999999999986421         


Q ss_pred             cHHHHHHHHHHHHHHHhc
Q 010917          368 HVDHARQSAQHCIKALLS  385 (497)
Q Consensus       368 ~~~~A~~~g~~~a~~i~~  385 (497)
                      .+..|..+|+.+|.+|..
T Consensus       296 ~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          296 QIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            566799999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.4e-36  Score=292.98  Aligned_cols=278  Identities=21%  Similarity=0.176  Sum_probs=206.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      ++||+|||||+||+++|..|+++|+   +|+|||+++..... +.....+........           ......+.+.+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~   66 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARK---NILLVDAGERRNRF-ASHSHGFLGQDGKAP-----------GEIIAEARRQI   66 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCCGGGG-CSCCCSSTTCTTCCH-----------HHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCccccc-chhhcCCcCCCCCCH-----------HHHHHHHHHHH
Confidence            4799999999999999999999997   89999987532110 111111110000000           00012233444


Q ss_pred             HHc-CcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhh
Q 010917          140 KEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  213 (497)
Q Consensus       140 ~~~-~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~  213 (497)
                      .+. +++++. ++|+.++.+.  ..+.+++++++.||+||+|||+.|. .|.++|...   .++++..      ......
T Consensus        67 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~  138 (297)
T 3fbs_A           67 ERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCP------YCHGYE  138 (297)
T ss_dssp             TTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE-CCCCBTTGGGBTTTEESCH------HHHTGG
T ss_pred             HhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC-CCCCCCchhhcCCeeEEcc------cCcchh
Confidence            455 688876 5899998765  3778888888999999999999876 455555432   3333321      111223


Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      ..+++++|+|+|.+|+|+|..|.+.| +|+++++.+..    +.    ..+.+.+++.||+++. ++|++++.+  +   
T Consensus       139 ~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~----~~~~~~l~~~gv~i~~-~~v~~i~~~--~---  203 (297)
T 3fbs_A          139 LDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PD----ADQHALLAARGVRVET-TRIREIAGH--A---  203 (297)
T ss_dssp             GTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CC----HHHHHHHHHTTCEEEC-SCEEEEETT--E---
T ss_pred             hcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CC----HHHHHHHHHCCcEEEc-ceeeeeecC--C---
Confidence            46899999999999999999999999 99999987652    23    3456778899999996 889999743  2   


Q ss_pred             EEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccC---C-CEEecCCCCCCCCcEEEeccccccCCccCCcccccccH
Q 010917          294 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV---G-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  369 (497)
Q Consensus       294 ~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~---g-~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~  369 (497)
                      .+.+.+|+++++|.||+++|++|+.+++++++++.+.   | ++.||++++|+.|+|||+|||+..+.          .+
T Consensus       204 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~----------~~  273 (297)
T 3fbs_A          204 DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG----------SV  273 (297)
T ss_dssp             EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTC----------CH
T ss_pred             eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchH----------HH
Confidence            6788999999999999999999999999999988653   4 79999999999999999999998632          56


Q ss_pred             HHHHHHHHHHHHHHhc
Q 010917          370 DHARQSAQHCIKALLS  385 (497)
Q Consensus       370 ~~A~~~g~~~a~~i~~  385 (497)
                      ..|..+|+.+|.+|..
T Consensus       274 ~~A~~~g~~aa~~i~~  289 (297)
T 3fbs_A          274 ALAVGDGAMAGAAAHR  289 (297)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            6788899999988853

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=6.6e-36  Score=292.27  Aligned_cols=287  Identities=21%  Similarity=0.262  Sum_probs=208.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHh
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  137 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~  137 (497)
                      .++||+||||||||++||..|++.|+   +|+|||++. .... .....        ....++++.. .........+.+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~gg~-~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~   73 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQL---STLILEKGM-PGGQ-IAWSE--------EVENFPGFPEPIAGMELAQRMHQ   73 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTGG-GGGCS--------CBCCSTTCSSCBCHHHHHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCC---cEEEEeCCC-CCcc-ccccc--------ccccCCCCCCCCCHHHHHHHHHH
Confidence            35799999999999999999999987   899999983 1100 00000        0001111100 000011123345


Q ss_pred             HHHHcCcEEEeCCcEEEEecC--C---CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 010917          138 WYKEKGIEMIYQDPVTSIDIE--K---QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  209 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~--~---~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~  209 (497)
                      .+++.+++++. .+|..++..  .   ..+.+.+|+.+.||+||+|||+.|. .|.+++.+.   .+++++.   .   .
T Consensus        74 ~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~i~g~~~~~~~~~~~~~---~---~  145 (325)
T 2q7v_A           74 QAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR-KLGIPGEDNFWGKGVSTCA---T---C  145 (325)
T ss_dssp             HHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC-CCCCTTTTTTBTTTEESCH---H---H
T ss_pred             HHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC-CCCCCChhhccCceEEEec---c---C
Confidence            56778999988 589999876  3   4677788888999999999999876 454555431   3444332   1   1


Q ss_pred             HHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHH-HHCCcEEEcCCeEEEEEeCC
Q 010917          210 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~  288 (497)
                      ......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   ++.+    .+.+ ++.||+++++++++++..  
T Consensus       146 ~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~----~~~l~~~~gv~i~~~~~v~~i~~--  216 (325)
T 2q7v_A          146 DGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVA----QARAFANPKMKFIWDTAVEEIQG--  216 (325)
T ss_dssp             HGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHH----HHHHHTCTTEEEECSEEEEEEEE--
T ss_pred             CHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHH----HHHHHhcCCceEecCCceEEEcc--
Confidence            22345679999999999999999999999999999999887642   3332    2334 346999999999999985  


Q ss_pred             CCcEEEEEeC---CCc--EEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCc
Q 010917          289 DGRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR  362 (497)
Q Consensus       289 ~~~v~~v~~~---~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~  362 (497)
                      ++.+..+.+.   +|+  ++++|.||+|+|++|+.++++++ +..+ +|++.||++++|+.|+|||+|||+..+.     
T Consensus       217 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-----  290 (325)
T 2q7v_A          217 ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY-----  290 (325)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC-----
T ss_pred             CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccH-----
Confidence            3455556664   665  79999999999999999998877 6654 6789999999999999999999998631     


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 010917          363 TARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       363 ~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                          ..+..|..||+.+|.+|..
T Consensus       291 ----~~~~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          291 ----RQLATSVGAGTRAAMMTER  309 (325)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHH
Confidence                1566799999999998864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=2.4e-36  Score=293.29  Aligned_cols=285  Identities=22%  Similarity=0.295  Sum_probs=208.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +||+||||||||+++|..|++.|+   +|+|||+.....+. ...+.            .+..........+...+.+++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~li~~~~gG~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~   66 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGGQILDTVDIE------------NYISVPKTEGQKLAGALKVHV   66 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTGGGGGCCEEC------------CBTTBSSEEHHHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCceeccccccc------------cccCcCCCCHHHHHHHHHHHH
Confidence            689999999999999999999987   89999864211000 00000            000000000000112334555


Q ss_pred             HHcCcEEEeCCcEEEEecC-----CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 010917          140 KEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  211 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~-----~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~  211 (497)
                      ++.+++++.+++|+.++++     ...+.+++++.+.||+||+|||+.|.. |.++|.+   ..+++++      ..+..
T Consensus        67 ~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~------~~~~~  139 (310)
T 1fl2_A           67 DEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN-MNVPGEDQYRTKGVTYC------PHCDG  139 (310)
T ss_dssp             HTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHG
T ss_pred             HHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhcccceeEEe------ccCcH
Confidence            6779999999899999865     347788888889999999999998763 4455532   1234332      12223


Q ss_pred             hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCC
Q 010917          212 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG  290 (497)
Q Consensus       212 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~  290 (497)
                      ....+++|+|||+|++|+|+|..|++.+.+|+++++.+.+.   .++    .+.+.+++ .||+++++++++++..+ ++
T Consensus       140 ~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~~~~v~~i~~~-~~  211 (310)
T 1fl2_A          140 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIILNAQTTEVKGD-GS  211 (310)
T ss_dssp             GGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEESSEEEEEEEES-SS
T ss_pred             hhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEecCCceEEEEcC-CC
Confidence            44578999999999999999999999999999999998763   343    34455666 69999999999999854 45


Q ss_pred             cEEEEEeCC---Cc--EEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCccc
Q 010917          291 RVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  364 (497)
Q Consensus       291 ~v~~v~~~~---g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~  364 (497)
                      ++..+.+.+   |+  ++++|.||+|+|++|+++++++. +..+ +|+|.||++++|+.|+|||+|||+..+..      
T Consensus       212 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~------  284 (310)
T 1fl2_A          212 KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK------  284 (310)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC------
T ss_pred             cEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch------
Confidence            565566643   53  69999999999999999888764 5554 57899999999999999999999986532      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 010917          365 RVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       365 ~~~~~~~A~~~g~~~a~~i~~  385 (497)
                         .+..|..+|+.+|.+|..
T Consensus       285 ---~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          285 ---QIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhhhHhhHHHHHHHHHH
Confidence               455688899999988864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=9.3e-36  Score=289.63  Aligned_cols=289  Identities=21%  Similarity=0.219  Sum_probs=207.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEE-EcCCCCCCCCCCCCCccccCCCCCCCCCCCCCc-cccCCCCCCCCH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTP  136 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~l-ie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~  136 (497)
                      .++||+|||||+||++||..|+++|+   +|+| +|++.. ...       +...  .....++++. .........++.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~li~e~~~~-gG~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~   69 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGL---KNVVMFEKGMP-GGQ-------ITSS--SEIENYPGVAQVMDGISFMAPWS   69 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTC---SCEEEECSSST-TGG-------GGGC--SCBCCSTTCCSCBCHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC---CeEEEEeCCCC-Cce-------eeee--ceeccCCCCCCCCCHHHHHHHHH
Confidence            35799999999999999999999998   7999 999432 100       0000  0000111111 000011112334


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCC--CEEE--ECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEK--QTLI--TNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  209 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~--~~v~--~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~  209 (497)
                      .++++.+++++.+ +|..+ .+.  ..+.  +..+..+.||+||+|||+.|. .|.++|...   .+++...      ..
T Consensus        70 ~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~  140 (315)
T 3r9u_A           70 EQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK-KAGFKGEDEFFGKGVSTCA------TC  140 (315)
T ss_dssp             HHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCH------HH
T ss_pred             HHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC-CCCCCChhhcCCCeEEeee------cc
Confidence            5556679999987 88888 444  3332  433328999999999999876 455566443   3444332      22


Q ss_pred             HHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCC
Q 010917          210 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  289 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~  289 (497)
                      ......+++++|+|+|.+|+|+|..|.+.+.+|+++++.+.+..   ++.   .+.+.+++.||++++++.+.+++.. +
T Consensus       141 ~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~-~  213 (315)
T 3r9u_A          141 DGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APS---TVEKVKKNEKIELITSASVDEVYGD-K  213 (315)
T ss_dssp             HGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHH---HHHHHHHCTTEEEECSCEEEEEEEE-T
T ss_pred             cccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHH---HHHHHHhcCCeEEEeCcEEEEEEcC-C
Confidence            23345689999999999999999999999999999999987632   333   3345567899999999999999864 4


Q ss_pred             CcEEEEEeC--CCc--EEEcCEEEEeccCcCCCcchhh---cC-Cccc-CCCEEecCCCCCCCCcEEEeccccccCCccC
Q 010917          290 GRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFER---VG-LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY  360 (497)
Q Consensus       290 ~~v~~v~~~--~g~--~i~~D~vv~a~G~~p~~~~~~~---~g-l~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~  360 (497)
                      +.+..+.+.  +|+  ++++|.||+|+|++|+..+++.   ++ +..+ +|++.||++++|+.|+|||+|||+..+.   
T Consensus       214 ~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~---  290 (315)
T 3r9u_A          214 MGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP---  290 (315)
T ss_dssp             TEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC---
T ss_pred             CcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch---
Confidence            455556655  775  7999999999999999988766   54 7765 5889999999999999999999986432   


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhc
Q 010917          361 DRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       361 g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                            ..+..|..+|+.+|.+|..
T Consensus       291 ------~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          291 ------KQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhHHhhHHHHHHHHHH
Confidence                  2567789999999998863

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=8.9e-36  Score=289.44  Aligned_cols=288  Identities=18%  Similarity=0.228  Sum_probs=209.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  139 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  139 (497)
                      +||+|||||+||+++|..|++.|+.  +|+|||++.....        +...  .....++++.. .........+.+++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~--~v~lie~~~~gg~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~   69 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVK--NAVLFEKGMPGGQ--------ITGS--SEIENYPGVKEVVSGLDFMQPWQEQC   69 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCS--SEEEECSSSTTCG--------GGGC--SCBCCSTTCCSCBCHHHHHHHHHHHH
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCC--cEEEEcCCCCCcc--------cccc--cccccCCCCcccCCHHHHHHHHHHHH
Confidence            6899999999999999999998862  7999999632110        0000  00001111100 00000112234455


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhhc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE  214 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~  214 (497)
                      ++.+++++. ++|..++.+.+  .+.+.+++.+.||+||+|||+.+. .|.++|...   ++++++..      ......
T Consensus        70 ~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~~~g~~~~~~~~~~~~~~------~~~~~~  141 (311)
T 2q0l_A           70 FRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK-RTGIKGESEYWGKGVSTCAT------CDGFFY  141 (311)
T ss_dssp             HTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTHHHHBTTTEESCHH------HHGGGG
T ss_pred             HHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC-CCCCCChhhccCCcEEEeec------CChhhc
Confidence            667999988 78999987666  677788888999999999999876 454454321   34444321      122345


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHH-HCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      .+++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+.   .++.    +.+.+. +.||++++++.+++++.. ++.+.
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~  213 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLTPYVVEEIKGD-ASGVS  213 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEETTEEEEEEEEE-TTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEeCCEEEEEECC-CCcEe
Confidence            68999999999999999999999999999999988763   3443    334444 479999999999999854 34444


Q ss_pred             EEEeC---CCc--EEEcCEEEEeccCcCCCcchhhcC----Cccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcc
Q 010917          294 AVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVG----LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       294 ~v~~~---~g~--~i~~D~vv~a~G~~p~~~~~~~~g----l~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                      .+.+.   +|+  ++++|.||+|+|++|++++++.++    +..+ +|+|.||++++|+.|+|||+|||+..+.      
T Consensus       214 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~------  287 (311)
T 2q0l_A          214 SLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP------  287 (311)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC------
T ss_pred             EEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch------
Confidence            56665   665  799999999999999999988775    7654 6889999999999999999999998631      


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 010917          364 ARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                         ..+..|..||+.+|.+|..
T Consensus       288 ---~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          288 ---KQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhHHHHHHHHHH
Confidence               1567799999999999863

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=2.1e-36  Score=297.21  Aligned_cols=295  Identities=18%  Similarity=0.247  Sum_probs=210.3

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT  135 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~  135 (497)
                      ..+++||+|||||+||+++|..|+++|+   +|+|||+.+.....    ..+.+... .....++++.. .........+
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~vie~~~~~~~~----~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~   90 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEI---KPILYEGMMANGIA----AGGQLTTT-TEIENFPGFPDGLTGSELMDRM   90 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBC----TTCGGGGS-SEECCSTTCTTCEEHHHHHHHH
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCCCCC----cCcccccc-hhhcccCCCcccCCHHHHHHHH
Confidence            4556899999999999999999999998   89999996521110    11111100 00011111111 0011112334


Q ss_pred             HhHHHHcCcEEEeCCcEEEEecCCCEEEE-----CCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHH
Q 010917          136 PEWYKEKGIEMIYQDPVTSIDIEKQTLIT-----NSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADAD  207 (497)
Q Consensus       136 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~~-----~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~  207 (497)
                      .+++++.+++++.++ |..++.+...+.+     .++..+.||+||+|||+.+. .|.++|..   ..++.+.      .
T Consensus        91 ~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~  162 (338)
T 3itj_A           91 REQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK-RMHLPGEETYWQKGISAC------A  162 (338)
T ss_dssp             HHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC-CCCCTTHHHHBTTTEESC------H
T ss_pred             HHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC-CCCCCCchhccCccEEEc------h
Confidence            556677899999986 9999987765544     46678999999999999876 34444422   1233332      1


Q ss_pred             HHHHh--hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC-CcEEEcCCeEEEE
Q 010917          208 ALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNL  284 (497)
Q Consensus       208 ~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i  284 (497)
                      .....  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.++.       ...+.+.+.+. ||++++++.++++
T Consensus       163 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i  235 (338)
T 3itj_A          163 VCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEA  235 (338)
T ss_dssp             HHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEE
T ss_pred             hcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEE
Confidence            12222  34689999999999999999999999999999999987654       23344556555 9999999999999


Q ss_pred             EeCCCCcEEEEEeCC-----CcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEe-cCCCCCCCCcEEEeccccccCC
Q 010917          285 EAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPL  357 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~-----g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~iya~GD~~~~~~  357 (497)
                      +.+ ++.+..+.+.+     ++++++|.||+|+|++|+..+++. ++..+ +|++.+ |++++|+.|+|||+|||+..+.
T Consensus       236 ~~~-~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~  313 (338)
T 3itj_A          236 KGD-GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY  313 (338)
T ss_dssp             EES-SSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC
T ss_pred             Ecc-cCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc
Confidence            865 44555677665     467999999999999999988876 77765 677874 8899999999999999998432


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          358 KMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       358 ~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                               ..+..|..+|+.||.+|..
T Consensus       314 ---------~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          314 ---------RQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHH
T ss_pred             ---------cceeeehhhhHHHHHHHHH
Confidence                     1566788999999988864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=3.4e-36  Score=293.58  Aligned_cols=291  Identities=19%  Similarity=0.243  Sum_probs=212.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEW  138 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  138 (497)
                      ++||+|||||+||+++|..|++.|+   +|+|+|+.....        .+....  ....++++.. ........++..+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   71 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGG--------QLTTTT--EVENWPGDPNDLTGPLLMERMHEH   71 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTTG--------GGGGCS--BCCCSTTCCSSCBHHHHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEccCCCCc--------eEecch--hhhhCCCCCCCCCHHHHHHHHHHH
Confidence            4799999999999999999999987   799999752110        000000  0001111110 0000111223445


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEE-ECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHhhc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLI-TNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLE  214 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~-~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~~  214 (497)
                      +++.+++++.+ ++..++.....+. +.++..+.||+||+|||+.+.. |.+++..   ..+++...      .....+.
T Consensus        72 ~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~~------~~~~~~~  143 (320)
T 1trb_A           72 ATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACA------TSDGFFY  143 (320)
T ss_dssp             HHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECC-CCCHHHHHTBTTTEESCH------HHHGGGG
T ss_pred             HHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCC-CCCCChHHhCCceeEecc------cCCcccc
Confidence            66789999987 4999987665433 5677789999999999998763 4444421   12343322      1222345


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++++++++.+ ++.+..
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~  219 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTG  219 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEE
Confidence            78999999999999999999999999999999988764   36777888888899999999999999999864 445656


Q ss_pred             EEeCC----C--cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCC-----CCCCCcEEEeccccccCCccCCcc
Q 010917          295 VKLED----G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       295 v~~~~----g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~-----~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                      +.+.+    |  +++++|.||+|+|++|+.++++ .++..++|++.||+++     +|+.|+|||+|||+..+..     
T Consensus       220 v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~-----  293 (320)
T 1trb_A          220 VRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR-----  293 (320)
T ss_dssp             EEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC-----
T ss_pred             EEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-ccccccCceEEECCCcccccccCCCCCEEEcccccCCcch-----
Confidence            66654    4  5799999999999999998877 4565557889999987     8999999999999986422     


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 010917          364 ARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                          .+..|..+|+.+|.+|..
T Consensus       294 ----~~~~A~~~g~~aa~~i~~  311 (320)
T 1trb_A          294 ----QAITSAGTGCMAALDAER  311 (320)
T ss_dssp             ----CHHHHHHHHHHHHHHHHH
T ss_pred             ----hhhhhhccHHHHHHHHHH
Confidence                456688888888888853

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=2e-36  Score=293.06  Aligned_cols=285  Identities=14%  Similarity=0.122  Sum_probs=197.3

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      +++.+||+||||||||++||.+|+++|+   +|+|||++.....- .....++.......+.           ++.....
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~---~v~lie~~~~gg~~-~~~~~~~~~~~~~~~~-----------~~~~~~~   67 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARK---QIALFDNNTNRNRV-TQNSHGFITRDGIKPE-----------EFKEIGL   67 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCGGGG-SSCBCCSTTCTTBCHH-----------HHHHHHH
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCee-eeecCCccCCCCCCHH-----------HHHHHHH
Confidence            4567899999999999999999999998   89999987421100 0000011100000000           0001112


Q ss_pred             hHHHHcC-cEEEeCCcEEEEecC---CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHH
Q 010917          137 EWYKEKG-IEMIYQDPVTSIDIE---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL  209 (497)
Q Consensus       137 ~~~~~~~-v~~~~~~~v~~i~~~---~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~  209 (497)
                      +.+.+++ +.+.. ..+..++..   .+++.+.+++++.||+||||||++|+ .|.++|.+   ..++.+.      ...
T Consensus        68 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~-~p~i~G~~~~~~~~v~~~------~~~  139 (304)
T 4fk1_A           68 NEVMKYPSVHYYE-KTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE-FPSIPNVREYYGKSLFSC------PYC  139 (304)
T ss_dssp             HHHTTSTTEEEEE-CCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE-CCSCTTHHHHBTTTEESC------HHH
T ss_pred             HHHHhcCCEEEEe-eEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc-cccccCccccccceeeec------ccc
Confidence            2233333 55554 455555432   34788899999999999999999987 45555532   1233322      222


Q ss_pred             HHhhccCCeEEEEcCCH-HHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          210 ISSLEKAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~-~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                      .....++++++|||+|. .++|+|..+.+.+.+|+++.+.+.+..         .+.+.+++.|++++.+. +..+.. +
T Consensus       140 ~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~---------~~~~~l~~~g~~~~~~~-v~~~~~-~  208 (304)
T 4fk1_A          140 DGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQ---------TIMDELSNKNIPVITES-IRTLQG-E  208 (304)
T ss_dssp             HSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCH---------HHHHHHHTTTCCEECSC-EEEEES-G
T ss_pred             chhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchh---------hhhhhhhccceeEeeee-EEEeec-C
Confidence            23334677888888875 568999999999999999988765432         34566889999999875 777764 3


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccc
Q 010917          289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  367 (497)
Q Consensus       289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~  367 (497)
                      ++.+..+.+++|+++++|.++++.|.+|+..++++++++.+ +|+|.||+++|||.|+|||+|||+..+..         
T Consensus       209 ~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~---------  279 (304)
T 4fk1_A          209 GGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS---------  279 (304)
T ss_dssp             GGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC---------
T ss_pred             CCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch---------
Confidence            56677899999999999999999888888889999999876 56799999999999999999999975422         


Q ss_pred             cHHHHHHHHHHHHHHHh
Q 010917          368 HVDHARQSAQHCIKALL  384 (497)
Q Consensus       368 ~~~~A~~~g~~~a~~i~  384 (497)
                      .+..|..+|+.||.+|.
T Consensus       280 ~~~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          280 SLIIAASQGNKAAIAIN  296 (304)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34568888888887774

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=1.7e-35  Score=298.51  Aligned_cols=288  Identities=20%  Similarity=0.221  Sum_probs=221.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           61 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      ++|+|||||+||+++|..|++   .|+   +|+|||+++.+.|. |.+..  .........++           ...+.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~---~V~vie~~~~~~~~-~~~~~--~~~~~~~~~~~-----------~~~~~~   64 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKA---DVKVINKSRFSYFR-PALPH--VAIGVRDVDEL-----------KVDLSE   64 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGS---EEEEEESSSEEEEC-CSSCC--CCSSCCCCCCE-----------EEEHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEeCCCCceec-cchhh--cccCCcCHHHH-----------HHHHHH
Confidence            689999999999999999999   766   89999999876443 33221  11111111111           234556


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCCEEEECCCcE----EEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  213 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~----i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  213 (497)
                      .+++.+++++.+ +|+.++.+.+.+++.++..    +.||+||+|||+.+. .+.++|... ....+.+..+...+.+.+
T Consensus        65 ~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~-~~~ipG~~~-~~~~~~~~~~~~~~~~~l  141 (409)
T 3h8l_A           65 ALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA-TELVKGWDK-YGYSVCEPEFATKLREKL  141 (409)
T ss_dssp             HTGGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC-GGGSBTHHH-HCEESSSTTHHHHHHHHH
T ss_pred             HHhhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC-ccCCCChhh-cCcCcCCHHHHHHHHHHH
Confidence            677889999986 9999999999999888764    999999999999876 344555322 344555666666666554


Q ss_pred             cc-CCeEEEEcCCH-------------------------HHHHHH----HHHHhCCC----cEEEEecCCcchhhccCHH
Q 010917          214 EK-AKKVVVVGGGY-------------------------IGMEVA----AAAVGWKL----DTTIIFPENHLLQRLFTPS  259 (497)
Q Consensus       214 ~~-~~~vvVvG~G~-------------------------~g~e~A----~~l~~~g~----~Vtlv~~~~~~~~~~~~~~  259 (497)
                      .. .++++|||+|.                         .++|+|    ..+.+.|.    +|+++++.+ +++. +++.
T Consensus       142 ~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~~  219 (409)
T 3h8l_A          142 ESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSD-LSPN  219 (409)
T ss_dssp             HHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTT-BCHH
T ss_pred             HHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccc-cCHH
Confidence            43 26777999991                         466776    45667774    899999988 6653 7899


Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhc--CCcccCCCEEecC
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--GLNSSVGGIQVDG  337 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~--gl~~~~g~i~vd~  337 (497)
                      +.+.+.+.+++.||+++++++|++++.+      .+.+++|+++++|.||+++|++|+ .+++++  ++..++|++.||+
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~  292 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDL  292 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEECSS------EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBT
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEECCC------eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCc
Confidence            9999999999999999999999999743      478899999999999999999998 677777  5544567899999


Q ss_pred             CCCC-CCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          338 QFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       338 ~~~t-~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ++|| +.|||||+|||+..+.+.        .+..|..||+.+|+||.+
T Consensus       293 ~~~~~~~~~vfa~GD~~~~~~~~--------~~~~A~~q~~~aa~~i~~  333 (409)
T 3h8l_A          293 NMVSIKYDNVYAVGDANSMTVPK--------LGYLAVMTGRIAAQHLAN  333 (409)
T ss_dssp             TSBBSSCTTEEECGGGBTTCCSC--------CHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEeehhccCCCCc--------HHHHHHHHHHHHHHHHHH
Confidence            9999 999999999999864322        556799999999999975

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=1e-35  Score=299.53  Aligned_cols=297  Identities=19%  Similarity=0.209  Sum_probs=220.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .|||||||||+||++||..|++.+. +.+|||||+++.+.|. | ++..++... .....+            ....+.+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~~-p-~~~~v~~g~-~~~~~~------------~~~~~~~   65 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYTC-Y-MSNEVIGGD-RELASL------------RVGYDGL   65 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEECS-T-THHHHHHTS-SCGGGG------------EECSHHH
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCCc-c-CHHHHhcCC-CCHHHH------------hhCHHHH
Confidence            4799999999999999999999886 6799999998765332 3 322222111 111111            2334567


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC----CCcEEEecCHHHHHHHHHhhc-
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLE-  214 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~----~~gv~~~~~~~~~~~~~~~~~-  214 (497)
                      .+.|++++. .+|+.+|++.+++++.+|.++.||+||+|||+.+. .+.++|..    ...++.+.+..+...+.+.+. 
T Consensus        66 ~~~gv~~i~-~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~-~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~  143 (401)
T 3vrd_B           66 RAHGIQVVH-DSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL-YDKIEGYSEALAAKLPHAWKAGEQTALLRRQLES  143 (401)
T ss_dssp             HHTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-GGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH
T ss_pred             HHCCCEEEE-eEEEEEEccCcEEEecccceeecceeeeccCCccc-cCCccCchhhcccCccceeccHHHHHHHHHHHHh
Confidence            788999987 48999999999999999999999999999999876 45555532    223445556666666555443 


Q ss_pred             --cCCeEEEEcCC------H----HHHHHHHHHHhCC--CcEEEEecCCcchh-hccCHHHHHHHHHHHHHCCcEEEcCC
Q 010917          215 --KAKKVVVVGGG------Y----IGMEVAAAAVGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGA  279 (497)
Q Consensus       215 --~~~~vvVvG~G------~----~g~e~A~~l~~~g--~~Vtlv~~~~~~~~-~~~~~~~~~~~~~~l~~~GV~i~~~~  279 (497)
                        .+..+++.+++      .    .+.+++..+.+.+  .+|+++++.+.+.. ..+++.+.+.+.+.+++.||++++++
T Consensus       144 ~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~  223 (401)
T 3vrd_B          144 MDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGP  223 (401)
T ss_dssp             SCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTT
T ss_pred             cccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCc
Confidence              34444444322      1    3456666666655  57999998887632 23566777777778899999999999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCC-CC-CCCCcEEEecccccc-C
Q 010917          280 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVAAF-P  356 (497)
Q Consensus       280 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~-t~~~~iya~GD~~~~-~  356 (497)
                      ++..++.+.+..  .+.+++|+++++|.+++++|.+|+ .+++++++..++|+|.||++ +| |++|||||+|||+.. +
T Consensus       224 ~v~~v~~~~~~~--~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~  300 (401)
T 3vrd_B          224 DAAVVKTDTEAM--TVETSFGETFKAAVINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAP  300 (401)
T ss_dssp             TTCEEEEETTTT--EEEETTSCEEECSEEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTT
T ss_pred             eEEEEEecccce--EEEcCCCcEEEeeEEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCC
Confidence            999887654433  578899999999999999999998 78899999888889999986 65 799999999999864 3


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          357 LKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       357 ~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      .+        .+...|..||+.+|+||++
T Consensus       301 ~p--------k~a~~A~~qa~v~A~ni~~  321 (401)
T 3vrd_B          301 MP--------KSAYSANSQAKVAAAAVVA  321 (401)
T ss_dssp             SC--------BSHHHHHHHHHHHHHHHHH
T ss_pred             CC--------chHHHHHHHHHHHHHHHHH
Confidence            22        2556699999999999964

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=3e-36  Score=305.51  Aligned_cols=302  Identities=20%  Similarity=0.203  Sum_probs=214.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .|+|||||||+||++||..|++.+. +.+|||||+++++.|. |.++. +... .....++           ...+.+++
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~~-p~l~~-v~~g-~~~~~~i-----------~~~~~~~~   66 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPH-LAMG-WRKFEDI-----------SVPLAPLL   66 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHH-HHHT-CSCGGGS-----------EEESTTTG
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCccC-ccHHH-HhcC-CCCHHHh-----------hhcHHHHH
Confidence            3689999999999999999999885 6799999999988774 44331 1111 1111111           12344566


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh---ccC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---EKA  216 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~---~~~  216 (497)
                      ++.|++++.+ +|+.||+++++|++++|++++||+||||||+++. + .++|.. ++...+.+..++..+.+.+   ...
T Consensus        67 ~~~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~-~i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~  142 (430)
T 3hyw_A           67 PKFNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-F-GAEGQE-ENSTSICTAEHALETQKKLQELYAN  142 (430)
T ss_dssp             GGGTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-C-CSBTHH-HHSCCCSSHHHHHHHHHHHHHHHHS
T ss_pred             HHCCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-C-CccCcc-cCcCCcccHHHHHHHHHHHHhhccC
Confidence            7789999875 8999999999999999999999999999999753 3 344432 2345566777776665543   345


Q ss_pred             CeEEEEcCCH------HHHHHH----HHHHhCC----CcEEEEecCCcchh--hccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917          217 KKVVVVGGGY------IGMEVA----AAAVGWK----LDTTIIFPENHLLQ--RLFTPSLAQRYEQLYQQNGVKFVKGAS  280 (497)
Q Consensus       217 ~~vvVvG~G~------~g~e~A----~~l~~~g----~~Vtlv~~~~~~~~--~~~~~~~~~~~~~~l~~~GV~i~~~~~  280 (497)
                      +.++|+|++.      .+.|++    ..+.+.+    .+|++++..+.+..  ....+...+.+++.++++||++++++.
T Consensus       143 ~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~  222 (430)
T 3hyw_A          143 PGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVA  222 (430)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCE
T ss_pred             CceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCce
Confidence            5566666542      233443    4455555    46888887765532  224566778899999999999999999


Q ss_pred             EEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcchhhcCCc--cc-CCCEEecCCCC-CCCCcEEEeccccc
Q 010917          281 IKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN--SS-VGGIQVDGQFR-TRMPGIFAIGDVAA  354 (497)
Q Consensus       281 v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~--~~-~g~i~vd~~~~-t~~~~iya~GD~~~  354 (497)
                      |++++.+   .+ .+...+|  +++++|.+++++|.+|+ +++..++..  .+ +|++.||+++| |++|||||+|||+.
T Consensus       223 v~~v~~~---~~-~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~  297 (430)
T 3hyw_A          223 VKAIEPD---KV-IYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA  297 (430)
T ss_dssp             EEEECSS---EE-EEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBC
T ss_pred             EEEEeCC---ce-EEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEe
Confidence            9999732   22 2333343  57999999999999998 666666543  33 45689999999 79999999999998


Q ss_pred             cCCccCCc--ccccccHHHHHHHHHHHHHHHhc
Q 010917          355 FPLKMYDR--TARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       355 ~~~~~~g~--~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      .+......  .....+.+.|.+||+.+|+||+.
T Consensus       298 ~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~  330 (430)
T 3hyw_A          298 IPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN  330 (430)
T ss_dssp             CCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence            77532111  11123556799999999999975

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=1.1e-35  Score=302.19  Aligned_cols=304  Identities=18%  Similarity=0.187  Sum_probs=221.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           60 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      +++|||||||+||++||..|++   .|+   +|+|||+++.+.|. |.+.. +... .....++           ...+.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~---~Vtlie~~~~~~~~-~~~~~-~~~g-~~~~~~~-----------~~~l~   66 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFV-PSNPW-VGVG-WKERDDI-----------AFPIR   66 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGS---EEEEECSSSEEECG-GGHHH-HHHT-SSCHHHH-----------EEECH
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcC---EEEEEeCCCCCccc-CCccc-cccC-ccCHHHH-----------HHHHH
Confidence            5799999999999999999999   666   89999999876553 22111 1100 0011111           23467


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC--CcEEEecCHHHHHHHHHhhc
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL--PGVHYIRDVADADALISSLE  214 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~--~gv~~~~~~~~~~~~~~~~~  214 (497)
                      +++++.+++++. .+|+.++++.+++.+++++++.||+||+|||+.+. .+.++|...  .....+.+..++..+.+.+.
T Consensus        67 ~~~~~~gv~~~~-~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~-~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~  144 (437)
T 3sx6_A           67 HYVERKGIHFIA-QSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA-FENVPGSDPHEGPVQSICTVDHAERAFAEYQ  144 (437)
T ss_dssp             HHHHTTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC-GGGSTTCSTTTSSEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEE-eEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC-cccCCCCCcccCcceecccccHHHHHHHHHH
Confidence            778889999986 69999999999999999999999999999999887 455667543  24555667777766554332


Q ss_pred             ---cCCeEEEEcCCHH----H--HHHH----HHHHhCCCc-----EEEEecCCcchhhcc--CHHHHHHHHHHHHHCCcE
Q 010917          215 ---KAKKVVVVGGGYI----G--MEVA----AAAVGWKLD-----TTIIFPENHLLQRLF--TPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       215 ---~~~~vvVvG~G~~----g--~e~A----~~l~~~g~~-----Vtlv~~~~~~~~~~~--~~~~~~~~~~~l~~~GV~  274 (497)
                         .+++++|||+|..    |  +|+|    ..+.+.|.+     |+++++.+.+....+  .++....+.+.++++||+
T Consensus       145 ~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~  224 (437)
T 3sx6_A          145 ALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE  224 (437)
T ss_dssp             HHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCE
T ss_pred             HHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCE
Confidence               2556788888554    4  7777    666677875     999999987633111  135778889999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCC-CCCcEEE
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-RMPGIFA  348 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~~~-----g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t-~~~~iya  348 (497)
                      ++++++|++++.  ++........+     ++++++|.+++++|++++..+.+..++..++|+|.||+++|| ++|||||
T Consensus       225 ~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa  302 (437)
T 3sx6_A          225 AYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFA  302 (437)
T ss_dssp             EECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEE
T ss_pred             EEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEE
Confidence            999999999983  22111111233     567999999999999988555444677666788999999999 9999999


Q ss_pred             eccccccCCccCCcc---cccccHHHHHHHHHHHHHHHhc
Q 010917          349 IGDVAAFPLKMYDRT---ARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       349 ~GD~~~~~~~~~g~~---~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      +|||+..+... +..   ....+...|..||+.+|+||..
T Consensus       303 ~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~  341 (437)
T 3sx6_A          303 AGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKA  341 (437)
T ss_dssp             CGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999876421 110   0133667799999999999975

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=6.7e-35  Score=286.10  Aligned_cols=294  Identities=19%  Similarity=0.242  Sum_probs=204.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHh
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  137 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~  137 (497)
                      .++||+|||||++|+++|..|++.|+   +|+|||+......   .....+...  .....++.+.. .........+.+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~---~v~lie~~~~~~~---~~gg~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~   78 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDI---APGGQLTTT--TDVENFPGFPEGILGVELTDKFRK   78 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTB---CTTCGGGGC--SEECCSTTCTTCEEHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCcccc---CCCceeeec--cccccCCCCccCCCHHHHHHHHHH
Confidence            34799999999999999999999988   8999998210000   000000000  00011111110 000011122344


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC-------CcEEEecCHHHHHH
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-------PGVHYIRDVADADA  208 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~-------~gv~~~~~~~~~~~  208 (497)
                      ++++.+++++.++ |..++....  ++.+ ++..+.||+||+|||+.+.. |.+++...       .+++..      ..
T Consensus        79 ~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~-~~~~g~~~~~~~~~~~~~~~~------~~  149 (333)
T 1vdc_A           79 QSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR-LSFVGSGEVLGGFWNRGISAC------AV  149 (333)
T ss_dssp             HHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC-CCCBTCSSSSSCCBTTTEESC------HH
T ss_pred             HHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC-CCCCCccccccccccCcEEEe------cc
Confidence            5667899999875 888987655  5666 67789999999999998764 44555432       233322      11


Q ss_pred             HHHhh--ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          209 LISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       209 ~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .....  ..+++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+..   .+.+   ..+.+++.||++++++++.+++.
T Consensus       150 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~~~~v~~i~~  223 (333)
T 1vdc_A          150 CDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVEAYG  223 (333)
T ss_dssp             HHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE
T ss_pred             CccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEecCCceEEEeC
Confidence            22222  5689999999999999999999999999999999887642   2222   22445678999999999999986


Q ss_pred             CCCC-cEEEEEeC---CC--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCC-CCCCCCcEEEeccccccCCc
Q 010917          287 GSDG-RVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLK  358 (497)
Q Consensus       287 ~~~~-~v~~v~~~---~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~iya~GD~~~~~~~  358 (497)
                      ++++ .+..+.+.   +|  +++++|.||+|+|++|+.++++ .++..+ +|++.||++ ++|+.|+|||+|||+..+..
T Consensus       224 ~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~  302 (333)
T 1vdc_A          224 DGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR  302 (333)
T ss_dssp             SSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCC
T ss_pred             CCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCch
Confidence            4321 55455554   45  5799999999999999998876 466654 678999997 68999999999999986421


Q ss_pred             cCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          359 MYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       359 ~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                               .+..|..+|+.+|.+|..
T Consensus       303 ---------~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          303 ---------QAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHH
T ss_pred             ---------hHHHHHHhHHHHHHHHHH
Confidence                     456688888888888753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.3e-34  Score=284.33  Aligned_cols=289  Identities=18%  Similarity=0.298  Sum_probs=202.8

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT  135 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~  135 (497)
                      ++.++||+|||||+||+++|..|++.|+   +|+|||+.....        .+....  ....++++.. ........++
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg--------~~~~~~--~~~~~~~~~~~~~~~~~~~~l   77 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQL---APLVFEGTSFGG--------ALMTTT--DVENYPGFRNGITGPELMDEM   77 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEECCSSCSC--------GGGSCS--CBCCSTTCTTCBCHHHHHHHH
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC--------ceeccc--hhhhcCCCCCCCCHHHHHHHH
Confidence            3456899999999999999999999988   899999752111        001000  0011111110 0000111233


Q ss_pred             HhHHHHcCcEEEeCCcEEEEecCC-CEE-EECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHH
Q 010917          136 PEWYKEKGIEMIYQDPVTSIDIEK-QTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI  210 (497)
Q Consensus       136 ~~~~~~~~v~~~~~~~v~~i~~~~-~~v-~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~  210 (497)
                      .+++++.+++++.++ |..++... .++ .+++++.+.||+||+|||+.+. .|.++|..   ..+++.+.      ...
T Consensus        78 ~~~~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~-~~~i~g~~~~~~~~~~~~~------~~~  149 (335)
T 2a87_A           78 REQALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR-YLQVPGEQELLGRGVSSCA------TCD  149 (335)
T ss_dssp             HHHHHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC-CCCCTHHHHTBTTTEESCH------HHH
T ss_pred             HHHHHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc-CCCCCchHhccCCceEEee------ccc
Confidence            455667899999875 88888732 367 7788888999999999999876 34444421   12333321      122


Q ss_pred             HhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC
Q 010917          211 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  290 (497)
Q Consensus       211 ~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~  290 (497)
                      ..+..+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+..   .+.+   ..+.+++.||++++++++++++.+  +
T Consensus       150 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~~~--~  221 (335)
T 2a87_A          150 GFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVDGD--T  221 (335)
T ss_dssp             GGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEECS--S
T ss_pred             hhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEecC--C
Confidence            2345689999999999999999999999999999999887643   2222   124456789999999999999854  2


Q ss_pred             cEEEEEeC---CC--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCC-CCCCCCcEEEeccccccCCccCCcc
Q 010917          291 RVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       291 ~v~~v~~~---~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                      .+..+.+.   +|  +++++|.||+|+|++|++++++ .++..+ +|++.||++ ++|+.|+|||+|||+..+..     
T Consensus       222 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~-----  295 (335)
T 2a87_A          222 TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYR-----  295 (335)
T ss_dssp             SCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCC-----
T ss_pred             cEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHH-----
Confidence            32234443   44  5799999999999999998876 456654 688999995 68999999999999986421     


Q ss_pred             cccccHHHHHHHHHHHHHHHh
Q 010917          364 ARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~  384 (497)
                          .+..|..+|+.+|.+|.
T Consensus       296 ----~~~~A~~~g~~aA~~i~  312 (335)
T 2a87_A          296 ----QAVTAAGSGCAAAIDAE  312 (335)
T ss_dssp             ----CHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHhHHHHHHHHH
Confidence                45567888888888875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=4.3e-34  Score=296.07  Aligned_cols=289  Identities=21%  Similarity=0.298  Sum_probs=211.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      ...+||+||||||||++||..|+++|+   +|+|+|+.....+...   .+        ...+.......+..+...+.+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~---~v~lie~~~GG~~~~~---~~--------~~~~~~~~~~~~~~l~~~l~~  275 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGI---RTGLMGERFGGQVLDT---VD--------IENYISVPKTEGQKLAGALKA  275 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSTTGGGTTC---SC--------BCCBTTBSSBCHHHHHHHHHH
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCC---eEEEEECCCCCccccc---cc--------ccccCCCCCCCHHHHHHHHHH
Confidence            346799999999999999999999988   8999986421100000   00        000111000000011123345


Q ss_pred             HHHHcCcEEEeCCcEEEEecC-----CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHH
Q 010917          138 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL  209 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~-----~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~  209 (497)
                      .+++.|++++.+++|+.++++     ...+.+++|..+.||+||+|||+.++. +.++|..   ..+++++....     
T Consensus       276 ~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~-~~ipG~~~~~~~~v~~~~~~~-----  349 (521)
T 1hyu_A          276 HVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN-MNVPGEDQYRTKGVTYCPHCD-----  349 (521)
T ss_dssp             HHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTTTTTEECCTTCC-----
T ss_pred             HHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC-CCCCChhhhcCceEEEeecCc-----
Confidence            566789999999999999864     457888888889999999999998764 4455542   23455443211     


Q ss_pred             HHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCC
Q 010917          210 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~  288 (497)
                       .....+++|+|||+|++|+|+|..|++.|.+|+++++.+.+..   +    ..+.+.+++ .||+++++++++++..+ 
T Consensus       350 -~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~~-  420 (521)
T 1hyu_A          350 -GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKGD-  420 (521)
T ss_dssp             -GGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEEC-
T ss_pred             -hhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEcC-
Confidence             1234689999999999999999999999999999999987753   2    245566777 69999999999999854 


Q ss_pred             CCcEEEEEeCC---Cc--EEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCc
Q 010917          289 DGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR  362 (497)
Q Consensus       289 ~~~v~~v~~~~---g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~  362 (497)
                      ++++..+.+.+   |+  ++++|.|++++|++||++++++. +..+ +|+|.||++++|+.|+|||+|||+..+..    
T Consensus       421 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~-l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~----  495 (521)
T 1hyu_A          421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK----  495 (521)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC----
T ss_pred             CCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhh-hccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc----
Confidence            45665666643   53  69999999999999999988763 6554 68899999999999999999999986532    


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 010917          363 TARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       363 ~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                           .+..|+.+|..||.++..
T Consensus       496 -----~~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          496 -----QIIIATGEGAKASLSAFD  513 (521)
T ss_dssp             -----CHHHHHHHHHHHHHHHHH
T ss_pred             -----eeeehHHhHHHHHHHHHH
Confidence                 455688888888888753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=8.8e-35  Score=287.69  Aligned_cols=300  Identities=16%  Similarity=0.221  Sum_probs=197.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccC-------CCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG-------SGGE  132 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-------~~~~  132 (497)
                      ++||+|||||++|+++|..|+++|+   +|+|||+++...-...................++++.....       ....
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~---~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGL---SYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL   79 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSC---CEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence            4799999999999999999999998   89999998653200000000000000000001111100000       0011


Q ss_pred             CCCHhHHHHcCcEEEeCCcEEEEecCCCE---EEECCCcEEEeccEEeccCCCCC-cCCCCCCCCC-CcE-EEecCHHHH
Q 010917          133 RQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTAS-RFPEKIGGYL-PGV-HYIRDVADA  206 (497)
Q Consensus       133 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~g~~i~~d~lvlAtG~~~~-~~~~~~g~~~-~gv-~~~~~~~~~  206 (497)
                      .++.+.+++.+++++++++|+.++.+...   +.++++ ++.||+||+|||.... ..|.++|... .+. .+...+.+ 
T Consensus        80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~-  157 (357)
T 4a9w_A           80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYST-  157 (357)
T ss_dssp             HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCC-
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCC-
Confidence            22334456779999999999999987765   666676 7999999999996322 1354455321 121 11111111 


Q ss_pred             HHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccchhhcc-CHHHHHHHHHHHH---------------
Q 010917          207 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRLF-TPSLAQRYEQLYQ---------------  269 (497)
Q Consensus       207 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~~~~~~-~~~~~~~~~~~l~---------------  269 (497)
                          .....+++|+|||+|.+|+|+|..|++.+ +|+++++. +.+++... +..+...+.+.+.               
T Consensus       158 ----~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (357)
T 4a9w_A          158 ----PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGF  232 (357)
T ss_dssp             ----SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC---------------------
T ss_pred             ----hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccc
Confidence                11235799999999999999999999998 69999987 45554322 2333333322222               


Q ss_pred             -------------HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEec
Q 010917          270 -------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD  336 (497)
Q Consensus       270 -------------~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd  336 (497)
                                   +.|+ +..+..+.+++..      .+.+.+|+++++|.||+|+|++|++++++++++..++|++.||
T Consensus       233 ~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd  305 (357)
T 4a9w_A          233 GDIVMVPPVLDARARGV-LAAVPPPARFSPT------GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVD  305 (357)
T ss_dssp             -CBCCCHHHHHHHHTTC-CCEECCCSEEETT------EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBC
T ss_pred             cCcccChhHHHHHhcCc-eEEecCcceEeCC------eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCcccc
Confidence                         4454 5556667777632      5788999999999999999999999999999999667889999


Q ss_pred             CC--CCCCCCcEEEec--cccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          337 GQ--FRTRMPGIFAIG--DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       337 ~~--~~t~~~~iya~G--D~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ++  ++|+.|+|||+|  ||+.....         .+..|..+|+.+|.+|..
T Consensus       306 ~~~l~~t~~~~vya~Gd~d~~~~~~~---------~~~~A~~~g~~~a~~i~~  349 (357)
T 4a9w_A          306 GSGLRALAVPSVWLLGYGDWNGMASA---------TLIGVTRYAREAVRQVTA  349 (357)
T ss_dssp             TTSCBBSSCTTEEECSSCGGGSTTCS---------STTTHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCCCeEEeccccccccchh---------hhhhhHHHHHHHHHHHHH
Confidence            99  899999999999  56652211         223477888888888864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=8.1e-34  Score=282.40  Aligned_cols=307  Identities=19%  Similarity=0.229  Sum_probs=206.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC------CCCCC----CCCCC-ccccCCCCC--CCCCCCCCc--
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA------YAPYE----RPALT-KGYLFPLDK--KPARLPGFH--  124 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~------~~~~~----~~~l~-~~~l~~~~~--~~~~~~~~~--  124 (497)
                      ++||+|||||+||+++|..|++.|+ . +|+|||+++      ..+..    .+... ..+-.....  .....+.+.  
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~-~-~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   81 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGI-T-DVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN   81 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-C-CEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCC-C-cEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence            4799999999999999999999986 2 799999986      11100    00000 000000000  000000000  


Q ss_pred             --cccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEe
Q 010917          125 --TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI  200 (497)
Q Consensus       125 --~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~  200 (497)
                        ..........+..++++.+++++.+++|+.++.+.  ..|.+.++ .+.||+||+|||+.+.  |.+|+   ..+.+.
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~--p~ip~---~~~~~~  155 (369)
T 3d1c_A           82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF--PKKPF---KYGIHY  155 (369)
T ss_dssp             CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS--BCCCS---SSCEEG
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc--cCCCC---Cceech
Confidence              00000000112334566899999999999998763  46777766 5899999999999864  33343   122222


Q ss_pred             cCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------ccCHHHHHHHHHHHHHCC-c
Q 010917          201 RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLAQRYEQLYQQNG-V  273 (497)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------~~~~~~~~~~~~~l~~~G-V  273 (497)
                      ..+.+..     ..++++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+++.      .+++...+.+.+.+++.| |
T Consensus       156 ~~~~~~~-----~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v  230 (369)
T 3d1c_A          156 SEIEDFD-----NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI  230 (369)
T ss_dssp             GGCSCGG-----GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCE
T ss_pred             hhcCChh-----hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcE
Confidence            2111111     125689999999999999999999999999999999877642      145677888899999997 9


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEeccCcCCCcchhhcCCcccCCCEEecCC-CCCCCCcEEEecc
Q 010917          274 KFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FRTRMPGIFAIGD  351 (497)
Q Consensus       274 ~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~-~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~t~~~~iya~GD  351 (497)
                      +++++++|.+++..+ +. ..+.+.+|+++. +|.||+|+|++|+.+++.+.+++.++|++.||++ ++|+.|+|||+||
T Consensus       231 ~~~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD  308 (369)
T 3d1c_A          231 EMNVHYTVKDIDFNN-GQ-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGA  308 (369)
T ss_dssp             EEECSCCEEEEEEET-TE-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECST
T ss_pred             EEecCcEEEEEEecC-Cc-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEecc
Confidence            999999999996432 22 357788887765 6999999999999877766556544677999985 6789999999999


Q ss_pred             ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917          352 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       352 ~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                      |+..+....+      .+..+.+||+.+|++|.+..
T Consensus       309 ~~~~~~~~~~------~~~~~~~~a~~~a~~l~~~~  338 (369)
T 3d1c_A          309 TVENDNAKLC------YIYKFRARFAVLAHLLTQRE  338 (369)
T ss_dssp             TCCCSSCCCC------SHHHHGGGHHHHHHHHHHHT
T ss_pred             ccccCCeeEE------EEehhhHHHHHHHHHHhccc
Confidence            9987654322      34557888999999998643

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=100.00  E-value=4.4e-34  Score=306.94  Aligned_cols=318  Identities=15%  Similarity=0.146  Sum_probs=213.2

Q ss_pred             CCCchhhhccccc---ccccccCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCC
Q 010917           38 HSSAKNFQRRGFV---VAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD  114 (497)
Q Consensus        38 ~~~~~~~~~~~~~---~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~  114 (497)
                      |.+|+........   +...++...+++|+||||||||++||..|+++|+   +|+|||+++.....        +... 
T Consensus       364 C~~n~~~g~e~~~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~---~Vtlie~~~~~GG~--------~~~~-  431 (729)
T 1o94_A          364 CTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGH--------LNQV-  431 (729)
T ss_dssp             CSSCTTTTTHHHHCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT--------HHHH-
T ss_pred             eccCccccccccccccccccccccCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCe--------eeec-
Confidence            8888766543211   1122234567899999999999999999999998   89999998764211        0000 


Q ss_pred             CCCCCCCCCccccCCCCCCCCHhHHHHc------CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC----
Q 010917          115 KKPARLPGFHTCVGSGGERQTPEWYKEK------GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS----  184 (497)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~----  184 (497)
                         ..+|+...+..  ...+....++..      ++++..+          +.++++++..+.||+||||||+.++    
T Consensus       432 ---~~~pg~~~~~~--~~~~~~~~i~~~~~~~~~~v~i~~~----------~~v~~~~~~~~~~d~vviAtG~~~~~~~~  496 (729)
T 1o94_A          432 ---AALPGLGEWSY--HRDYRETQITKLLKKNKESQLALGQ----------KPMTADDVLQYGADKVIIATGARWNTDGT  496 (729)
T ss_dssp             ---TTSTTCGGGHH--HHHHHHHHHHHHHHHSTTCEEECSC----------CCCCHHHHHTSCCSEEEECCCEEECSSCC
T ss_pred             ---ccCCChHHHHH--HHHHHHHHHHHhhcccCCceEEEeC----------eEEehhhccccCCCEEEEcCCCCcccccc
Confidence               01111110000  000111112221      3333322          2344444556889999999999843    


Q ss_pred             ---cCCCCCCCC--CCcEEEecCHHHHHHHHHhhccCCeEEEEc--CCHHHHHHHHHHHhCCCcEEEEecCCcchhh-cc
Q 010917          185 ---RFPEKIGGY--LPGVHYIRDVADADALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-LF  256 (497)
Q Consensus       185 ---~~~~~~g~~--~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-~~  256 (497)
                         ..+.++|.+  .+++.+..   +.  +......+++|+|||  +|++|+|+|..|+++|.+||++++.+ +++. .+
T Consensus       497 ~~p~~~~ipG~~~~~~~v~~~~---~~--l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~  570 (729)
T 1o94_A          497 NCLTHDPIPGADASLPDQLTPE---QV--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHF  570 (729)
T ss_dssp             CTTTSSCCTTCCTTSTTEECHH---HH--HHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHH
T ss_pred             cCccCCCCCCccccCCCEEEHH---HH--hcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccc
Confidence               234556654  45555432   21  222344678999999  99999999999999999999999998 6553 13


Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cE------------------EEcCEEEEeccCcCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-ST------------------IDADTIVIGIGAKPT  317 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-~~------------------i~~D~vv~a~G~~p~  317 (497)
                      +.. ...+.+.++++||++++++++++++.  ++........++ ++                  +++|.||+|+|.+|+
T Consensus       571 ~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          571 TLE-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             TTC-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             ccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            333 45677888999999999999999973  221111111233 33                  999999999999999


Q ss_pred             CcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCce
Q 010917          318 VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF  397 (497)
Q Consensus       318 ~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~  397 (497)
                      ++++++++.       .+|++++|+.|+|||+|||+...           .+..|..+|+.+|.+|.+.  ..+..+|| 
T Consensus       648 ~~l~~~l~~-------~vd~~~~t~~~~VyAiGD~~~~~-----------~~~~A~~~G~~aA~~i~~~--l~~~~~p~-  706 (729)
T 1o94_A          648 CTLWNELKA-------RESEWAENDIKGIYLIGDAEAPR-----------LIADATFTGHRVAREIEEA--NPQIAIPY-  706 (729)
T ss_dssp             CHHHHHHHH-------TGGGTGGGTCCEEEECGGGTSCC-----------CHHHHHHHHHHHHHTTTSS--CTTSCCCC-
T ss_pred             hHHHHHHhh-------hcccccccCCCCeEEEeCccchh-----------hHHHHHHHHHHHHHHhhhh--cccCCCCe-
Confidence            988776531       26889999999999999998731           4567999999999999853  45677898 


Q ss_pred             eeeccccCCCCcceeeEEeecC
Q 010917          398 YSRVFEYEGSPRKVWWQFFGDN  419 (497)
Q Consensus       398 ~~~~~~~~g~~~~~~~~~~g~~  419 (497)
                      |++++++.       +|++|..
T Consensus       707 ~~~~~~~~-------~~~~~~~  721 (729)
T 1o94_A          707 KRETIAWG-------TPHMPGG  721 (729)
T ss_dssp             CCCCCCTT-------CCSSTTC
T ss_pred             eeecccCc-------ccccCCC
Confidence            88988764       5666643

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=100.00  E-value=1.4e-33  Score=287.07  Aligned_cols=291  Identities=16%  Similarity=0.163  Sum_probs=199.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+||||||||++||..|++.|. +.+|+|||+++.. |...  ..+ ..+.......           ....+.++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~vie~~~~~-gg~~--~~g-~~p~~~~~~~-----------~~~~~~~~   68 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVP-FGLV--RFG-VAPDHPEVKN-----------VINTFTQT   68 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSS-CTHH--HHT-SCTTCGGGGG-----------HHHHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCC-CCCEEEEeCCCcC-Ccee--ecc-cCCCCccHHH-----------HHHHHHHH
Confidence            35799999999999999999999983 4599999998764 3210  000 0010000000           01233456


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----HHHh--
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISS--  212 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~--  212 (497)
                      +++.+++++.++.+      .+.+++++. .+.||+||+|||+.+...|.++|.+.+++++.+++.....    ....  
T Consensus        69 ~~~~gv~~~~~~~v------~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~  141 (460)
T 1cjc_A           69 ARSDRCAFYGNVEV------GRDVTVQEL-QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAP  141 (460)
T ss_dssp             HTSTTEEEEBSCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC
T ss_pred             HHhCCcEEEeeeEE------eeEEEeccc-eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCcccccccc
Confidence            67789999988665      123444332 3689999999999963456678877788887654422110    0000  


Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCcch--------------hh---
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPENHLL--------------QR---  254 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-~Vtlv~~~~~~~--------------~~---  254 (497)
                      ...+++|+|||+|++|+|+|..|+                    +.+. +|++++|.+.+.              +.   
T Consensus       142 ~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~  221 (460)
T 1cjc_A          142 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRP  221 (460)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCcee
Confidence            014789999999999999999999                    5677 799999987651              10   


Q ss_pred             -----cc----------CH---HHHHHHHHHHHH--------------CCcEEEcCCeEEEEEeCCCC-cEEEEEeC---
Q 010917          255 -----LF----------TP---SLAQRYEQLYQQ--------------NGVKFVKGASIKNLEAGSDG-RVAAVKLE---  298 (497)
Q Consensus       255 -----~~----------~~---~~~~~~~~~l~~--------------~GV~i~~~~~v~~i~~~~~~-~v~~v~~~---  298 (497)
                           .+          +.   .+.+.+.+.+++              +||++++++.+.+|...+++ ++..+.+.   
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~  301 (460)
T 1cjc_A          222 MLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR  301 (460)
T ss_dssp             ECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEE
Confidence                 00          11   023344455555              89999999999999864335 56555543   


Q ss_pred             ------------CC--cEEEcCEEEEeccCcCCCcchhhcCC-ccc-CCCEEecCCCCCC-CCcEEEeccccccCCccCC
Q 010917          299 ------------DG--STIDADTIVIGIGAKPTVSPFERVGL-NSS-VGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYD  361 (497)
Q Consensus       299 ------------~g--~~i~~D~vv~a~G~~p~~~~~~~~gl-~~~-~g~i~vd~~~~t~-~~~iya~GD~~~~~~~~~g  361 (497)
                                  +|  ++++||.||+++|++|+. +   .++ +.+ ++++.+|+++||+ .|+|||+|||+..+..   
T Consensus       302 l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~---  374 (460)
T 1cjc_A          302 LEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTG---  374 (460)
T ss_dssp             EESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTC---
T ss_pred             EccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCc---
Confidence                        34  579999999999999996 3   566 554 5889999999998 7999999999975432   


Q ss_pred             cccccccHHHHHHHHHHHHHHHhc
Q 010917          362 RTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       362 ~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                            .+..|+.+|+.+|.+|++
T Consensus       375 ------~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          375 ------VITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             ------CHHHHHHHHHHHHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHHHHH
Confidence                  345678888888888864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.98  E-value=2.3e-33  Score=300.21  Aligned_cols=295  Identities=17%  Similarity=0.115  Sum_probs=205.6

Q ss_pred             CCCchhhhccccc---ccccccCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCC
Q 010917           38 HSSAKNFQRRGFV---VAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD  114 (497)
Q Consensus        38 ~~~~~~~~~~~~~---~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~  114 (497)
                      |.+||...++...   +...++...++||+|||||+|||+||+.|+++|+   +|+|||+++...... .  .....+..
T Consensus       366 C~vnp~~g~e~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~---~V~liE~~~~~GG~~-~--~~~~~p~~  439 (690)
T 3k30_A          366 CTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGY---DVVLAEAGRDLGGRV-T--QESALPGL  439 (690)
T ss_dssp             CSSCTTTTTTTTTCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSCTHH-H--HHHTSTTC
T ss_pred             CCcCcccCcccccccCccccCcccccceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCEe-e--eccCCCch
Confidence            7777776554321   1222335567899999999999999999999998   899999987543210 0  00000100


Q ss_pred             CCCCCCCCCccccCCCCCCCCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCc-------C
Q 010917          115 KKPARLPGFHTCVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-------F  186 (497)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~-------~  186 (497)
                      .....           ...+....+.+. +++++++++++          .+++..+.||+||+|||+.++.       .
T Consensus       440 ~~~~~-----------~~~~~~~~~~~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~  498 (690)
T 3k30_A          440 SAWGR-----------VKEYREAVLAELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHT  498 (690)
T ss_dssp             GGGGH-----------HHHHHHHHHHTCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCS
T ss_pred             hHHHH-----------HHHHHHHHHHHcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCC
Confidence            00000           012234445565 89998876542          1233457899999999998541       3


Q ss_pred             CCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEc--CCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHH
Q 010917          187 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  264 (497)
Q Consensus       187 ~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~  264 (497)
                      |.++|.+.+++.+.   .  +.+......+++|+|||  +|++|+|+|..|.+.|.+|+++++.+.+++...++.....+
T Consensus       499 ~~i~G~~~~~v~~~---~--~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l  573 (690)
T 3k30_A          499 TALPIAEGMQVLGP---D--DLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRI  573 (690)
T ss_dssp             SCCCBCTTSEEECH---H--HHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHH
T ss_pred             CCCCCCCCCcEEcH---H--HHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHH
Confidence            44556544444432   1  12222345678899999  99999999999999999999999999888764456667788


Q ss_pred             HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCC
Q 010917          265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMP  344 (497)
Q Consensus       265 ~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~  344 (497)
                      .+.++++||+++++++|++++.+ +..+..+...+++++++|.||+|+|++|+.++++.++....          +|+.|
T Consensus       574 ~~~l~~~GV~i~~~~~V~~i~~~-~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~~~----------~t~~~  642 (690)
T 3k30_A          574 QRRLIENGVARVTDHAVVAVGAG-GVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARRD----------AGEIA  642 (690)
T ss_dssp             HHHHHHTTCEEEESEEEEEEETT-EEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHHHH----------HTSCS
T ss_pred             HHHHHHCCCEEEcCcEEEEEECC-eEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhhhc----------ccCCC
Confidence            89999999999999999999842 11111111235568999999999999999988776532211          78899


Q ss_pred             cEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917          345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  386 (497)
Q Consensus       345 ~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~  386 (497)
                      +||++|||+..+           .+..|..||+.+|.+|.+.
T Consensus       643 ~VyaiGD~~~~~-----------~~~~A~~~g~~aa~~i~~~  673 (690)
T 3k30_A          643 SVRGIGDAWAPG-----------TIAAAVWSGRRAAEEFDAV  673 (690)
T ss_dssp             EEEECGGGTSCB-----------CHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEeCCCchh-----------hHHHHHHHHHHHHHHHHhh
Confidence            999999999743           4456999999999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.98  E-value=1.2e-31  Score=274.03  Aligned_cols=288  Identities=15%  Similarity=0.148  Sum_probs=196.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCC----CCC-CC-----------CCccccCCCCCCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAP----YER-PA-----------LTKGYLFPLDKKPARLP  121 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~----~~~-~~-----------l~~~~l~~~~~~~~~~~  121 (497)
                      ++|+|||||+||++||..|++   .|++..+|+|||+++...    |.. +.           +..............++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            699999999999999999999   887212299999986532    110 00           00000000000000011


Q ss_pred             CCccc-----------cCCCCCCCCHhHHHHcCcE--EEeCCcEEEEecCCC----EEEECC---C--cEEEeccEEecc
Q 010917          122 GFHTC-----------VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNS---G--KLLKYGSLIVAT  179 (497)
Q Consensus       122 ~~~~~-----------~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~---g--~~i~~d~lvlAt  179 (497)
                      ++...           .......++.+++++.+++  ++++++|+.++....    +|++.+   |  .++.||+||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            11000           0000011223344566887  888999999987654    676654   4  578999999999


Q ss_pred             C--CCCCcCCCCCCCCC-Cc-EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc
Q 010917          180 G--CTASRFPEKIGGYL-PG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL  255 (497)
Q Consensus       180 G--~~~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~  255 (497)
                      |  +.|+ .|.++|.+. ++ +.+..++.+..     ...+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+++..
T Consensus       163 G~~s~p~-~p~ipG~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~  236 (464)
T 2xve_A          163 GHFSTPY-VPEFEGFEKFGGRILHAHDFRDAL-----EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK  236 (464)
T ss_dssp             CSSSSBC-CCCCBTTTTCCSEEEEGGGCCCGG-----GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCC
T ss_pred             CCCCCCc-cCCCCCcccCCceEEehhhhCCHh-----HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCC
Confidence            9  7776 456666432 33 33322221111     2368999999999999999999999999999999988776532


Q ss_pred             cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhh-cCCcccCC-CE
Q 010917          256 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER-VGLNSSVG-GI  333 (497)
Q Consensus       256 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~g-~i  333 (497)
                      +             ..||+++  ..|++++.   +   .|.+.||+++++|.||+|+|++|+.+++.+ +++..+++ .+
T Consensus       237 ~-------------~~~V~~~--~~V~~i~~---~---~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v  295 (464)
T 2xve_A          237 W-------------PENWDER--PNLVRVDT---E---NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP  295 (464)
T ss_dssp             C-------------CTTEEEC--SCEEEECS---S---EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC
T ss_pred             C-------------CCceEEc--CCeEEEeC---C---EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCccc
Confidence            2             2588887  67888862   2   578899999999999999999999998875 67776655 44


Q ss_pred             EecCC---CCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917          334 QVDGQ---FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       334 ~vd~~---~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                       ++.+   ++|+.|+||++|||+...           .+..|..||+.+|++|.+..
T Consensus       296 -~~~~~~~~~t~~p~i~aiGd~~~~~-----------~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          296 -LNLYKGVVWEDNPKFFYIGMQDQWY-----------SFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             -SSEETTTEESSSTTEEECSCSCCSS-----------CHHHHHHHHHHHHHHHTTSS
T ss_pred             -ccccceEecCCCCCEEEEeCccccc-----------chHHHHHHHHHHHHHHcCCC
Confidence             4433   568999999999988632           45678999999999998754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.97  E-value=1.3e-32  Score=279.61  Aligned_cols=286  Identities=17%  Similarity=0.186  Sum_probs=193.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHH-c------CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVE-H------GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE  132 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~-~------g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (497)
                      +++|+||||||||++||..|++ .      ++   +|+|||+++.. |...  ..+ ..+......           ...
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~---~V~lie~~~~~-gg~~--~~g-v~p~~~~~~-----------~~~   64 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDM---AVDMLEMLPTP-WGLV--RSG-VAPDHPKIK-----------SIS   64 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE---EEEEEESSSSC-STHH--HHT-SCTTCTGGG-----------GGH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCC---eEEEEecCCCC-CCcc--ccc-cCCCCCCHH-----------HHH
Confidence            4799999999999999999999 7      66   89999998753 3211  000 111110000           011


Q ss_pred             CCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH-H-
Q 010917          133 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL-I-  210 (497)
Q Consensus       133 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~-~-  210 (497)
                      ..+.+++++.+++++.+..+      .+.|+++++ .+.||+||+|||+.+...+.++|.+.+++++..++.....- . 
T Consensus        65 ~~~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d  137 (456)
T 1lqt_A           65 KQFEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPH  137 (456)
T ss_dssp             HHHHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGG
T ss_pred             HHHHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcc
Confidence            23445566779999887543      234555544 37899999999997323456778777788765433211000 0 


Q ss_pred             --Hhh--ccCCeEEEEcCCHHHHHHHHHHHhC--------------------C-CcEEEEecCCcchhhccCH-------
Q 010917          211 --SSL--EKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-LDTTIIFPENHLLQRLFTP-------  258 (497)
Q Consensus       211 --~~~--~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g-~~Vtlv~~~~~~~~~~~~~-------  258 (497)
                        ...  ..+++|+|||+|++|+|+|..|++.                    | .+|+++.+++.+...+..+       
T Consensus       138 ~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~  217 (456)
T 1lqt_A          138 FEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELAD  217 (456)
T ss_dssp             GTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGG
T ss_pred             cccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhc
Confidence              011  1578999999999999999999974                    5 4899999987654321111       


Q ss_pred             -----------H------------------HHHHHHHHHHH------CCcEEEcCCeEEEEEeCCCCcEEEEEeC-----
Q 010917          259 -----------S------------------LAQRYEQLYQQ------NGVKFVKGASIKNLEAGSDGRVAAVKLE-----  298 (497)
Q Consensus       259 -----------~------------------~~~~~~~~l~~------~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----  298 (497)
                                 +                  +.+.+.+.+++      +||++++++.+.++..+  +.+..+.+.     
T Consensus       218 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~  295 (456)
T 1lqt_A          218 LDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNELV  295 (456)
T ss_dssp             CTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEEE
T ss_pred             CCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEec
Confidence                       1                  12344454555      79999999999999843  444334443     


Q ss_pred             -----------CC--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCC-CCCCcEEEeccccccCCccCCcc
Q 010917          299 -----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       299 -----------~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~-t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                                 +|  ++++||.||+++|++|+. +   .++..+ +|++.+|+++| |+.|+|||+|||+..+..     
T Consensus       296 ~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~-----  366 (456)
T 1lqt_A          296 SDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTG-----  366 (456)
T ss_dssp             ECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCS-----
T ss_pred             CCCcccccccCCCceEEEEcCEEEEccccccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCch-----
Confidence                       34  469999999999999986 3   345544 57899999999 799999999999975532     


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 010917          364 ARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                          .+..|+.+|..+|.+|++
T Consensus       367 ----~i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          367 ----VIGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             ----CTTHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHHH
Confidence                223477788888888764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.97  E-value=2.4e-31  Score=293.14  Aligned_cols=280  Identities=15%  Similarity=0.169  Sum_probs=205.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .+|||||||||||++||..|++.|+   +|+|||+++.....-...++..          +++...   .++.....+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~---~V~lie~~~~~GG~~~~~~k~~----------i~~~~~---~~~~~~~~~~l  191 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGA---RVMLLDERAEAGGTLLDTAGEQ----------IDGMDS---SAWIEQVTSEL  191 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSSGGGGGSSCCE----------ETTEEH---HHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCCceeccCCccc----------cCCCCH---HHHHHHHHHHH
Confidence            4789999999999999999999998   8999999876431100000000          000000   00011122334


Q ss_pred             HHc-CcEEEeCCcEEEEecCCCEEEE-----------------CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEec
Q 010917          140 KEK-GIEMIYQDPVTSIDIEKQTLIT-----------------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR  201 (497)
Q Consensus       140 ~~~-~v~~~~~~~v~~i~~~~~~v~~-----------------~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~  201 (497)
                      .+. +++++.+++|..++.......+                 .++..+.||+||||||+.|+. +.++|.+.+++++..
T Consensus       192 ~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~-~~ipG~~~~gv~~~~  270 (965)
T 2gag_A          192 AEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP-IVFENNDRPGIMLAG  270 (965)
T ss_dssp             HHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC-CCCBTCCSTTEEEHH
T ss_pred             hhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC-CCCCCCCCCCEEEhH
Confidence            454 8999999899988865432111                 112368999999999999874 557888888988764


Q ss_pred             CHHHHHHHHHh--hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCC
Q 010917          202 DVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA  279 (497)
Q Consensus       202 ~~~~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~  279 (497)
                      ++.   .+...  ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.          .+.+++.||++++++
T Consensus       271 ~~~---~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~----------~~~l~~~GV~v~~~~  337 (965)
T 2gag_A          271 AVR---SYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA----------AAQAVADGVQVISGS  337 (965)
T ss_dssp             HHH---HHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH----------HHHHHHTTCCEEETE
T ss_pred             HHH---HHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh----------HHHHHhCCeEEEeCC
Confidence            332   22221  235689999999999999999999999999999999876541          456889999999999


Q ss_pred             eEEEEEeCCCCcEEEEEeCC-------C--cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCC-----CCCCc
Q 010917          280 SIKNLEAGSDGRVAAVKLED-------G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR-----TRMPG  345 (497)
Q Consensus       280 ~v~~i~~~~~~~v~~v~~~~-------g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~-----t~~~~  345 (497)
                      .+++++..+++++..+.+.+       |  +++++|.|++++|++|+++++...     ++++.+|++++     |+.|+
T Consensus       338 ~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p~  412 (965)
T 2gag_A          338 VVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVAN  412 (965)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCTT
T ss_pred             EeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCCC
Confidence            99999853245555666654       5  679999999999999999888765     36899999887     89999


Q ss_pred             EEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          346 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       346 iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      |||+|||+..+.           ...|..+|+.+|.+|++
T Consensus       413 IyAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          413 QHLAGAMTGRLD-----------TASALSTGAATGAAAAT  441 (965)
T ss_dssp             EEECGGGGTCCS-----------HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCchh-----------HHHHHHHHHHHHHHHHH
Confidence            999999998642           23688999999999865

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.97  E-value=3.5e-31  Score=282.72  Aligned_cols=279  Identities=17%  Similarity=0.166  Sum_probs=198.0

Q ss_pred             CCCchhhhcccccccccccCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCC
Q 010917           38 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP  117 (497)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~  117 (497)
                      |.+|+....+...+  ..+...++||+|||||+||++||..|+++|+   +|+|||+++...+.. .+..  ..+...  
T Consensus       353 C~~np~~~~e~~~~--~~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~---~V~lie~~~~~gg~~-~~~~--~~~~~~--  422 (671)
T 1ps9_A          353 CLVNPRACHETKMP--ILPAVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGGQF-NIAK--QIPGKE--  422 (671)
T ss_dssp             CSSCTTTTCTTTSC--CCSCSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCTTH-HHHT--TSTTCT--
T ss_pred             EEeCcccccccccC--CCCCCCCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCee-eccc--cCCCHH--
Confidence            88887765432211  2234557899999999999999999999988   899999987654321 0000  001000  


Q ss_pred             CCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEE-EeccEEeccCCCCCcCCCCCCCCCCc
Q 010917          118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPG  196 (497)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i-~~d~lvlAtG~~~~~~~~~~g~~~~g  196 (497)
                       .+   ..     ....+..++++.++++++++.|..   .          .+ .||+||||||+.|. .|.++|.+.++
T Consensus       423 -~~---~~-----~~~~~~~~~~~~gv~~~~~~~v~~---~----------~~~~~d~lviAtG~~p~-~~~i~G~~~~~  479 (671)
T 1ps9_A          423 -EF---YE-----TLRYYRRMIEVTGVTLKLNHTVTA---D----------QLQAFDETILASGIVPR-TPPIDGIDHPK  479 (671)
T ss_dssp             -TH---HH-----HHHHHHHHHHHHTCEEEESCCCCS---S----------SSCCSSEEEECCCEEEC-CCCCBTTTSTT
T ss_pred             -HH---HH-----HHHHHHHHHHHcCCEEEeCcEecH---H----------HhhcCCEEEEccCCCcC-CCCCCCCCCCc
Confidence             00   00     011234556778999999876532   1          14 89999999999887 45567765566


Q ss_pred             EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCC------------------------------------
Q 010917          197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL------------------------------------  240 (497)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~------------------------------------  240 (497)
                      +.+..     +.+......+++|+|||+|++|+|+|..|++.|.                                    
T Consensus       480 v~~~~-----~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  554 (671)
T 1ps9_A          480 VLSYL-----DVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSP  554 (671)
T ss_dssp             EEEHH-----HHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCS
T ss_pred             EeeHH-----HHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCC
Confidence            66532     2222223468999999999999999999998874                                    


Q ss_pred             -cEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCC
Q 010917          241 -DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT  317 (497)
Q Consensus       241 -~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~  317 (497)
                       +|+++++.+..+...+++.....+.+.|++.||++++++++++++.  ++ + .+. .+|  +++++|.||+|+|++||
T Consensus       555 ~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          555 RQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             SEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred             cEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEEEEeCCEEEECCCcccc
Confidence             4567777666665556777778888999999999999999999973  22 2 222 567  57999999999999999


Q ss_pred             CcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 010917          318 VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  383 (497)
Q Consensus       318 ~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i  383 (497)
                      +++++.+.               ...++||++|||+.....         .+..|+.||..+|.+|
T Consensus       630 ~~l~~~l~---------------~~g~~v~aiGD~~~~~~~---------~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          630 RALAQPLI---------------DSGKTVHLIGGCDVAMEL---------DARRAIAQGTRLALEI  671 (671)
T ss_dssp             CTTHHHHH---------------TTTCCEEECGGGTCCSSC---------CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---------------hcCCCEEEECCcCccCch---------hHHHHHHHHHHHHHhC
Confidence            98877541               123689999999986431         4677999999999875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.5e-31  Score=275.42  Aligned_cols=253  Identities=16%  Similarity=0.165  Sum_probs=190.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      ++||+|||||+||++||.+|++. +   +|+|||+++...+.....+.... .       +++    .    ......++
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~---~V~vie~~~~~GG~~~~~~~~~~-g-------~~~----~----~~~~~~~l  167 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-L---TVALIEERGWLGGDMWLKGIKQE-G-------FNK----D----SRKVVEEL  167 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-C---CEEEECTTSSSSCSGGGTCSEET-T-------TTE----E----HHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-C---CEEEEeCCCCCCCeeeccccccC-C-------CCC----C----HHHHHHHH
Confidence            46899999999999999999998 6   89999999876554322111100 0       000    0    00111122


Q ss_pred             H---HcCcEEEeCCcEEEEecCCCEEEE---CCCc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH
Q 010917          140 K---EKGIEMIYQDPVTSIDIEKQTLIT---NSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  211 (497)
Q Consensus       140 ~---~~~v~~~~~~~v~~i~~~~~~v~~---~~g~--~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~  211 (497)
                      .   +.+++++++++|..++.+.+.+..   ++++  .+.||+||+|||+.++ .+.++|.+.+++++..   +...+.+
T Consensus       168 ~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~-~~~~~g~~~~gv~~~~---~~~~~~~  243 (493)
T 1y56_A          168 VGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS-TMLFENNDMPGVFRRD---FALEVMN  243 (493)
T ss_dssp             HHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC-CCCCTTTTSTTEEEHH---HHHHHHH
T ss_pred             HHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc-CCCCCCCCCCCEEEcH---HHHHHHH
Confidence            1   458999988888888876653322   4454  6899999999999987 4556787788887653   3333433


Q ss_pred             h--hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCC
Q 010917          212 S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  289 (497)
Q Consensus       212 ~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~  289 (497)
                      .  ..++++++|+|+|++|+|                                   +.++++||++++++.|.+++.+  
T Consensus       244 ~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~~--  286 (493)
T 1y56_A          244 VWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEGN--  286 (493)
T ss_dssp             TSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEECS--
T ss_pred             hcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEecC--
Confidence            2  235689999999999988                                   4467889999999999999843  


Q ss_pred             CcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcc---cCCCEE-ecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917          290 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS---SVGGIQ-VDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  365 (497)
Q Consensus       290 ~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~---~~g~i~-vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~  365 (497)
                      +.+..+.+.+|+++++|.||+++|++|+.++++.++++.   ++|++. ||++++ +.|+|||+|||+..+         
T Consensus       287 ~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~---------  356 (493)
T 1y56_A          287 EKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK---------  356 (493)
T ss_dssp             SSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC---------
T ss_pred             CceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc---------
Confidence            345567788999999999999999999999999998865   256676 899999 999999999999753         


Q ss_pred             cccHHHHHHHHHHHHHHHhc
Q 010917          366 VEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       366 ~~~~~~A~~~g~~~a~~i~~  385 (497)
                        .+..|..+|+.+|.+|.+
T Consensus       357 --~~~~A~~~g~~aa~~i~~  374 (493)
T 1y56_A          357 --PHYANYLEGKLVGAYILK  374 (493)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHHHHH
Confidence              456689999999999975

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.97  E-value=7.5e-31  Score=269.04  Aligned_cols=314  Identities=14%  Similarity=0.098  Sum_probs=192.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCC---CcEEEEcCCCCCCCCCCCCCccccCC--C------CCCCCCCCCCc---
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKEAYAPYERPALTKGYLFP--L------DKKPARLPGFH---  124 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~---~~V~lie~~~~~~~~~~~l~~~~l~~--~------~~~~~~~~~~~---  124 (497)
                      ..+||+|||||+||+++|..|++.|. .   .+|+|||+++...|....+..+....  .      ...+.....+.   
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~-~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l  107 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQ-AQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL  107 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHH-HHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhccc-ccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence            34699999999999999999999982 1   28999999987765432221110000  0      00000000000   


Q ss_pred             ----------cccC-----CCCCCCCHhHHHHcCcEEEeCCcEEEEecC---CC----EEEECCCc----EEEeccEEec
Q 010917          125 ----------TCVG-----SGGERQTPEWYKEKGIEMIYQDPVTSIDIE---KQ----TLITNSGK----LLKYGSLIVA  178 (497)
Q Consensus       125 ----------~~~~-----~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~---~~----~v~~~~g~----~i~~d~lvlA  178 (497)
                                ....     ..+..++....++.+++++++++|+.++..   .+    +|.+.++.    ++.||+||+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA  187 (463)
T 3s5w_A          108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS  187 (463)
T ss_dssp             HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred             hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence                      0000     000001112223457899999999999875   43    56666665    7999999999


Q ss_pred             cCCCCCcCCC-CCCCCCC-cEEEecCHHH-HHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcchh
Q 010917          179 TGCTASRFPE-KIGGYLP-GVHYIRDVAD-ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ  253 (497)
Q Consensus       179 tG~~~~~~~~-~~g~~~~-gv~~~~~~~~-~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~  253 (497)
                      ||+.|. .|. ..+.... .+.+...+.+ .+.+......+++|+|||+|.+|+|+|..|.+.  +.+|+++++.+.+++
T Consensus       188 tG~~p~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p  266 (463)
T 3s5w_A          188 PGGTPR-IPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP  266 (463)
T ss_dssp             CCCEEC-CCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB
T ss_pred             CCCCCC-CcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC
Confidence            999776 343 2221111 3333322221 112211122589999999999999999999999  899999999987643


Q ss_pred             h--------c-----------cCHHHHHHHHHHHHH--------------------------CCcEEEcCCeEEEEEeCC
Q 010917          254 R--------L-----------FTPSLAQRYEQLYQQ--------------------------NGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       254 ~--------~-----------~~~~~~~~~~~~l~~--------------------------~GV~i~~~~~v~~i~~~~  288 (497)
                      .        .           +++.....+.+.+..                          .||++++++.|++++..+
T Consensus       267 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~  346 (463)
T 3s5w_A          267 ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA  346 (463)
T ss_dssp             CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET
T ss_pred             ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC
Confidence            1        1           222222222222222                          699999999999998653


Q ss_pred             CCcEEEEEeC---CCc--EEEcCEEEEeccCcCC--CcchhhcCCcccCCCEEecCCCCCC-----CCcEEEeccccccC
Q 010917          289 DGRVAAVKLE---DGS--TIDADTIVIGIGAKPT--VSPFERVGLNSSVGGIQVDGQFRTR-----MPGIFAIGDVAAFP  356 (497)
Q Consensus       289 ~~~v~~v~~~---~g~--~i~~D~vv~a~G~~p~--~~~~~~~gl~~~~g~i~vd~~~~t~-----~~~iya~GD~~~~~  356 (497)
                      ++  ..+.+.   +|+  ++++|.||+|+|++|+  .+++..+....  |++.||+++++.     .|+|||+|||....
T Consensus       347 ~~--~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~  422 (463)
T 3s5w_A          347 QG--IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIYAQGFSQASH  422 (463)
T ss_dssp             TE--EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred             CE--EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh--CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence            33  245554   665  4999999999999999  66777654433  789999999874     46799999998643


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHH
Q 010917          357 LKMYDRTARVEHVDHARQSAQHCIKAL  383 (497)
Q Consensus       357 ~~~~g~~~~~~~~~~A~~~g~~~a~~i  383 (497)
                      ..... .    .-..|.+++..++..+
T Consensus       423 g~~~~-~----l~~~a~r~~~i~~~~~  444 (463)
T 3s5w_A          423 GLSDT-L----LSVLPVRAEEISGSLY  444 (463)
T ss_dssp             CTTTT-S----STTHHHHHHHHHHHHH
T ss_pred             CcCcc-c----hhHHHHHHHHHHHHHH
Confidence            22111 1    1123666666554443

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.96  E-value=3.7e-29  Score=255.01  Aligned_cols=288  Identities=11%  Similarity=0.080  Sum_probs=189.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC-C----CCcc---c----cCC-------CCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP-A----LTKG---Y----LFP-------LDK  115 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~-~----l~~~---~----l~~-------~~~  115 (497)
                      +.++|+|||||+||+++|..|++.|+ ..+|+|||+.+...    |... .    ++..   .    +..       ...
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~   83 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP   83 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence            45899999999999999999999986 45799999986431    2110 0    0000   0    000       000


Q ss_pred             CCC-----------CCCCCccccCC-------CCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECC---Cc---E
Q 010917          116 KPA-----------RLPGFHTCVGS-------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS---GK---L  169 (497)
Q Consensus       116 ~~~-----------~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~---g~---~  169 (497)
                      ...           .+.++......       ....++.++.++.+..++++++|+.++....  +|++.+   |+   +
T Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~  163 (447)
T 2gv8_A           84 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISK  163 (447)
T ss_dssp             CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEE
T ss_pred             hhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEE
Confidence            000           00000000000       0001112233344677888999999987654  566654   65   7


Q ss_pred             EEeccEEeccCC--CCCcCCCCCCCCC-----Cc-EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCc
Q 010917          170 LKYGSLIVATGC--TASRFPEKIGGYL-----PG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD  241 (497)
Q Consensus       170 i~~d~lvlAtG~--~~~~~~~~~g~~~-----~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~  241 (497)
                      +.||+||+|||.  .|. .|.++|.+.     ++ +.+..++.+..     ...+++|+|||+|++|+|+|..|++.+.+
T Consensus       164 ~~~d~VVvAtG~~s~p~-~p~i~G~~~~~~~~~g~v~~~~~~~~~~-----~~~~k~VvVvG~G~sg~e~A~~l~~~~~~  237 (447)
T 2gv8_A          164 DIFDAVSICNGHYEVPY-IPNIKGLDEYAKAVPGSVLHSSLFREPE-----LFVGESVLVVGGASSANDLVRHLTPVAKH  237 (447)
T ss_dssp             EEESEEEECCCSSSSBC-BCCCBTHHHHHHHSTTSEEEGGGCCCGG-----GGTTCCEEEECSSHHHHHHHHHHTTTSCS
T ss_pred             EEeCEEEECCCCCCCCC-CCCCCChhhhhccCCccEEEecccCChh-----hcCCCEEEEEccCcCHHHHHHHHHHHhCC
Confidence            999999999998  554 455555321     22 44433222221     12589999999999999999999999999


Q ss_pred             -EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeccCcCCCc
Q 010917          242 -TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVS  319 (497)
Q Consensus       242 -Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~-i~~D~vv~a~G~~p~~~  319 (497)
                       |+++++.+.+                +++.||++  +..|++++.. ++   .|++.||++ +++|.||+|+|++|+.+
T Consensus       238 ~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~~-~~---~v~~~dG~~~~~~D~vi~atG~~~~~~  295 (447)
T 2gv8_A          238 PIYQSLLGGGD----------------IQNESLQQ--VPEITKFDPT-TR---EIYLKGGKVLSNIDRVIYCTGYLYSVP  295 (447)
T ss_dssp             SEEEECTTCCS----------------CBCSSEEE--ECCEEEEETT-TT---EEEETTTEEECCCSEEEECCCBCCCCC
T ss_pred             cEEEEeCCCCc----------------CCCCCeEE--ecCeEEEecC-CC---EEEECCCCEeccCCEEEECCCCCcCCC
Confidence             9999998755                34567875  4678888632 22   578889986 79999999999999999


Q ss_pred             c-----hhhc--CCcccCCCEEecCCCC---CCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917          320 P-----FERV--GLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       320 ~-----~~~~--gl~~~~g~i~vd~~~~---t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                      +     ++++  ++.. ++.+.++.+.+   ++.|+||++||+....           .+..|..||+.+|++|.+..
T Consensus       296 ~l~~~~l~~~~~~i~~-~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-----------~~~~a~~qa~~~a~~~~g~~  361 (447)
T 2gv8_A          296 FPSLAKLKSPETKLID-DGSHVHNVYQHIFYIPDPTLAFVGLALHVV-----------PFPTSQAQAAFLARVWSGRL  361 (447)
T ss_dssp             CHHHHSCCSTTTCCCS-SSSSCCSEETTTEETTCTTEEESSCCBSSC-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred             CCcccccccccCceec-CCCcccccccccccCCCCcEEEEecccccc-----------CchHHHHHHHHHHHHHcCCC
Confidence            8     6654  2322 24455555555   6899999999997642           45678999999999998643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.95  E-value=7.6e-28  Score=249.41  Aligned_cols=298  Identities=17%  Similarity=0.224  Sum_probs=190.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCC-----CCCCC----C-ccccCCCCCC---CCCCCCCcc
Q 010917           60 NREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPY-----ERPAL----T-KGYLFPLDKK---PARLPGFHT  125 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~-~~g~~~~~V~lie~~~~~~~-----~~~~l----~-~~~l~~~~~~---~~~~~~~~~  125 (497)
                      .+||+|||||+||+++|..|+ +.|+   +|+|||+++...-     ..|..    . ..+.+.....   ...+... .
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~---~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~-~   83 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGL---TTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT-Y   83 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---CEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS-E
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCC---CEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc-C
Confidence            479999999999999999999 8887   8999999764320     01111    0 0000000000   0000000 0


Q ss_pred             ccCCCCCCCCHhHHHHcCc--EEEeCCcEEEEecCCC----EEEECCCcEEEeccEEeccC--CCCCcCCCCCCCC-CCc
Q 010917          126 CVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LPG  196 (497)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~g~~i~~d~lvlAtG--~~~~~~~~~~g~~-~~g  196 (497)
                      ....+...++....++.++  +++++++|++++.+..    +|++++|+++.||+||+|||  +.|. .|.++|.+ ..+
T Consensus        84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~g  162 (540)
T 3gwf_A           84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN-FPNLPGLDTFEG  162 (540)
T ss_dssp             EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC-CCCCTTGGGCCS
T ss_pred             CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC-CCCCCCccccCC
Confidence            0000111223444566787  7899999999987665    78889999999999999999  5665 46566643 223


Q ss_pred             E-EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc-hhh---ccCHHHHHHHH------
Q 010917          197 V-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQR---LFTPSLAQRYE------  265 (497)
Q Consensus       197 v-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~---~~~~~~~~~~~------  265 (497)
                      . .+.....+     .....+|+|+|||+|.+|+|+|..|++.+.+||+++|.+.+ ++.   .+++...+.++      
T Consensus       163 ~~~~~~~~~~-----~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~  237 (540)
T 3gwf_A          163 ETIHTAAWPE-----GKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRI  237 (540)
T ss_dssp             EEEEGGGCCS-----SCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHH
T ss_pred             CEEEeecCCC-----ccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHH
Confidence            2 11111111     12246899999999999999999999999999999999873 221   01121111111      


Q ss_pred             -------------------------------------------------------------------HH-----------
Q 010917          266 -------------------------------------------------------------------QL-----------  267 (497)
Q Consensus       266 -------------------------------------------------------------------~~-----------  267 (497)
                                                                                         +.           
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~  317 (540)
T 3gwf_A          238 WERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETA  317 (540)
T ss_dssp             HHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                                                                               11           


Q ss_pred             ----------------------HHHCCcEEEc--CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhh
Q 010917          268 ----------------------YQQNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  323 (497)
Q Consensus       268 ----------------------l~~~GV~i~~--~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~  323 (497)
                                            +.+.+|+++.  ...|++|+++      +|.+.||+++++|.||+|||+++++.++..
T Consensus       318 ~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~  391 (540)
T 3gwf_A          318 RKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVTEDGVLHELDVLVFATGFDAVDGNYRR  391 (540)
T ss_dssp             HHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEETTCCEEECSEEEECCCBSCSSHHHHT
T ss_pred             HhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEcCCCCEEECCEEEECCccCccccCcCc
Confidence                                  1145889885  6789999753      688999999999999999999998766665


Q ss_pred             cCCcccCCCEEecC--------C--CCC-CCCcEEEe-ccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          324 VGLNSSVGGIQVDG--------Q--FRT-RMPGIFAI-GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       324 ~gl~~~~g~i~vd~--------~--~~t-~~~~iya~-GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      .++... +++.+++        +  +.+ +.||+|.+ |..+...+          ....+..|++++++.|.
T Consensus       392 ~~i~g~-~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s----------~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          392 IEIRGR-DGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTN----------LPPSIETQVEWISDTIG  453 (540)
T ss_dssp             SEEECG-GGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSC----------HHHHHHHHHHHHHHHHH
T ss_pred             ceEECC-CCcCHHHhhccChhhccccccCCCCceEEEecCCCCCcc----------HHHHHHHHHHHHHHHHH
Confidence            544332 3444432        2  222 78999999 77654111          23446677888877663

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.94  E-value=2.1e-26  Score=238.86  Aligned_cols=303  Identities=16%  Similarity=0.212  Sum_probs=184.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCCC----Cc---cccCCCC-----CCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPAL----TK---GYLFPLD-----KKPARL  120 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-----~~~~l----~~---~~l~~~~-----~~~~~~  120 (497)
                      +..+||||||||+||+++|..|++.|+   +|+|||+++...-     ..|..    ..   .+.+...     .....+
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~---~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~   83 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGM---KVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENF   83 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccC
Confidence            345799999999999999999999887   8999999864320     00100    00   0000000     000000


Q ss_pred             CCCccccCCCCCCCCHhHHHHcCc--EEEeCCcEEEEecCCC----EEEECCCcEEEeccEEeccC--CCCCcCCCCCCC
Q 010917          121 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGG  192 (497)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~g~~i~~d~lvlAtG--~~~~~~~~~~g~  192 (497)
                      +.     ..+...++....++.++  .++++++|+.++.+..    .|++++|+++.||+||+|||  +.|. .|.++|.
T Consensus        84 ~~-----~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~-~p~ipG~  157 (545)
T 3uox_A           84 AS-----QPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR-MPDIKGI  157 (545)
T ss_dssp             CB-----HHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTG
T ss_pred             CC-----HHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc-CCCCCCc
Confidence            00     00011223344556676  7888999999987655    88899999999999999999  6765 4556664


Q ss_pred             C-CCc--EEEecCHHHHHHHH-HhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc-hhhc---cCHHHHHH-
Q 010917          193 Y-LPG--VHYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQRL---FTPSLAQR-  263 (497)
Q Consensus       193 ~-~~g--v~~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~---~~~~~~~~-  263 (497)
                      + ..+  ++..+...+..... .....+|+|+|||+|.+|+|+|..|++.+.+||+++|.+.+ ++..   +++..... 
T Consensus       158 ~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l  237 (545)
T 3uox_A          158 DSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSL  237 (545)
T ss_dssp             GGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHH
T ss_pred             cccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHH
Confidence            3 223  22211111100000 01236899999999999999999999999999999999874 2210   11111100 


Q ss_pred             -----------------------------------------------------------------------H--------
Q 010917          264 -----------------------------------------------------------------------Y--------  264 (497)
Q Consensus       264 -----------------------------------------------------------------------~--------  264 (497)
                                                                                             +        
T Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  317 (545)
T 3uox_A          238 RNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRV  317 (545)
T ss_dssp             HHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHc
Confidence                                                                                   0        


Q ss_pred             ---------------------------HHHHHHCCcEEEc--CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          265 ---------------------------EQLYQQNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       265 ---------------------------~~~l~~~GV~i~~--~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                                                 .+.|.+.+|+++.  +..|++|+++      +|.+.+| ++++|.||+|||++
T Consensus       318 ~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~------gv~~~dG-~~~~D~IV~ATGf~  390 (545)
T 3uox_A          318 KDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE------GIKTADA-AYDLDVIIYATGFD  390 (545)
T ss_dssp             SCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT------EEEESSC-EEECSEEEECCCCB
T ss_pred             CCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC------eEEeCCC-eeecCEEEECCccc
Confidence                                       1112234888886  6789999854      6888999 99999999999999


Q ss_pred             CCCcchhhcCCcccCCCEEecCC--------CC---CCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          316 PTVSPFERVGLNSSVGGIQVDGQ--------FR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       316 p~~~~~~~~gl~~~~g~i~vd~~--------~~---t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      +++.++....+... +|+.+++.        +-   .+.||+|.+.-    |+...+.   ......+..|++++++.|.
T Consensus       391 ~~~~~~~~~~i~g~-~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~g----p~~~~~~---~s~~~~~e~~~~~i~~~i~  462 (545)
T 3uox_A          391 AVTGSLDRIDIRGK-DNVRLIDAWAEGPSTYLGLQARGFPNFFTLVG----PHNGSTF---CNVGVCGGLQAEWVLRMIS  462 (545)
T ss_dssp             SSSCSCTTSEEECG-GGCBHHHHTTTSCCCBTTTBCTTCTTEEECSS----GGGTGGG---SCHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCceEECC-CCccHHHhhccccceeeccccCCCCcEEEEeC----CCCCCcc---ccHHHHHHHHHHHHHHHHH
Confidence            87666554433322 34444422        11   27899998842    2111111   1123346678888887663

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.93  E-value=2.7e-25  Score=230.75  Aligned_cols=303  Identities=17%  Similarity=0.208  Sum_probs=184.6

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----C-CCCC----Cc-cccCCCCCC---CCCCCCCc
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----E-RPAL----TK-GYLFPLDKK---PARLPGFH  124 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~----~-~~~l----~~-~~l~~~~~~---~~~~~~~~  124 (497)
                      ...+||+|||||+||+++|..|++.|+   +|+|||+++....    . .|..    .. .+.+.....   ...+... 
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~-   94 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGL---TVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEK-   94 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS-
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccC-
Confidence            345799999999999999999999987   8999999764320    0 0111    00 000000000   0000000 


Q ss_pred             cccCCCCCCCCHhHHHHcCc--EEEeCCcEEEEecCCC----EEEECCCcEEEeccEEeccC--CCCCcCCCCCCCC-CC
Q 010917          125 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP  195 (497)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~g~~i~~d~lvlAtG--~~~~~~~~~~g~~-~~  195 (497)
                      ...+.+...++...+++.++  +++++++|+.++.+..    +|++++|+++.||+||+|||  +.|. .|.++|.+ ..
T Consensus        95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~  173 (549)
T 4ap3_A           95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN-TPAFDGLDRFT  173 (549)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC-CCCCTTGGGCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence            00000011223344566787  7889999999987665    88899999999999999999  6766 46666643 22


Q ss_pred             cE-EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHH-------------
Q 010917          196 GV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA-------------  261 (497)
Q Consensus       196 gv-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~-------------  261 (497)
                      +. .+..... .+   .....+|+|+|||+|.+|+|+|..|++.+.+||+++|.+.++....++++.             
T Consensus       174 g~~~~~~~~~-~~---~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~  249 (549)
T 4ap3_A          174 GDIVHTARWP-HD---GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAE  249 (549)
T ss_dssp             SEEEEGGGCC-TT---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHH
T ss_pred             CceEEecccc-cc---ccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHH
Confidence            32 1111100 00   011368999999999999999999999999999999998741111111110             


Q ss_pred             --------------------------------------------------------------HHHHHH------------
Q 010917          262 --------------------------------------------------------------QRYEQL------------  267 (497)
Q Consensus       262 --------------------------------------------------------------~~~~~~------------  267 (497)
                                                                                    +.+++.            
T Consensus       250 ~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~  329 (549)
T 4ap3_A          250 RRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAE  329 (549)
T ss_dssp             HHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                                                                          011111            


Q ss_pred             -----------------------HHHCCcEEE--cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchh
Q 010917          268 -----------------------YQQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  322 (497)
Q Consensus       268 -----------------------l~~~GV~i~--~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~  322 (497)
                                             +.+.+|+++  ....|++|+++      +|.+.+| ++++|.||+|||+++++.++.
T Consensus       330 ~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~------gv~~~dG-~~~~D~iI~ATGf~~~~~~~~  402 (549)
T 4ap3_A          330 LLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDET------GIVTTGA-HYDLDMIVLATGFDAMTGSLD  402 (549)
T ss_dssp             HHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETT------EEEESSC-EEECSEEEECCCEEESSTTGG
T ss_pred             hCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCC------cEEeCCC-ceecCEEEECCcccccccccC
Confidence                                   123378887  24678899853      5888999 999999999999999875666


Q ss_pred             hcCCcccCCCEEecCCCC-----------CCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          323 RVGLNSSVGGIQVDGQFR-----------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       323 ~~gl~~~~g~i~vd~~~~-----------t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      ...+... +++.+++.++           .+.||+|.+.    .|+...+.   ......+..|++++++.|.
T Consensus       403 ~~~i~g~-~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~----Gp~~~~~~---~s~~~~~e~~~~~i~~~i~  467 (549)
T 4ap3_A          403 KLEIVGR-GGRTLKETWAAGPRTYLGLGIDGFPNFFNLT----GPGSPSVL---ANMVLHSELHVDWVADAIA  467 (549)
T ss_dssp             GSEEECG-GGCBHHHHTTTSCCCBTTTBCTTCTTEEETT----CTTSCGGG---SCHHHHHHHHHHHHHHHHH
T ss_pred             ceeEECC-CCcCHHHhhccchhhccccccCCCCcEEEEe----CCCCCCcC---ccHHHHHHHHHHHHHHHHH
Confidence            5544322 4555553321           1678888863    11111111   1122346677777777663

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.92  E-value=7.4e-25  Score=228.18  Aligned_cols=300  Identities=16%  Similarity=0.223  Sum_probs=183.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCCCC---ccccCCCCCCC-----CCCCCCcc
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPALT---KGYLFPLDKKP-----ARLPGFHT  125 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-----~~~~l~---~~~l~~~~~~~-----~~~~~~~~  125 (497)
                      ..+||+|||||++|+++|..|++.|+   +|+|+|+++...-     ..|...   ....+...-.+     ..+... .
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~-~   90 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER-Y   90 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS-S
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccc-c
Confidence            35799999999999999999999987   8999999865320     001100   00000000000     000000 0


Q ss_pred             ccCCCCCCCCHhHHHHcC--cEEEeCCcEEEEecCC----CEEEECCCcEEEeccEEeccCC--CCCcCCCCCCCC-CCc
Q 010917          126 CVGSGGERQTPEWYKEKG--IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LPG  196 (497)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~--v~~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lvlAtG~--~~~~~~~~~g~~-~~g  196 (497)
                      ........++....++.+  ++++++++|++++.+.    .+|++++|+++.+|+||+|||.  .|. .|.++|.+ ..|
T Consensus        91 ~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~-~p~i~G~~~f~G  169 (542)
T 1w4x_A           91 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ-LPNFPGLKDFAG  169 (542)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC-CCCCTTGGGCCS
T ss_pred             CCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCCC
Confidence            000000111122234444  5688899999987643    2678888888999999999995  454 45555532 334


Q ss_pred             --EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-hh---ccCHHH----------
Q 010917          197 --VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QR---LFTPSL----------  260 (497)
Q Consensus       197 --v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~---~~~~~~----------  260 (497)
                        +++.+...+     .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+. +.   .+.+..          
T Consensus       170 ~~~hs~~~~~~-----~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~  244 (542)
T 1w4x_A          170 NLYHTGNWPHE-----PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAE  244 (542)
T ss_dssp             EEEEGGGCCSS-----CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHH
T ss_pred             ceEECCCCCCc-----hhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHH
Confidence              222111001     011368999999999999999999999999999999887652 21   011110          


Q ss_pred             -------------------------------------------------------------HHHHHHH------------
Q 010917          261 -------------------------------------------------------------AQRYEQL------------  267 (497)
Q Consensus       261 -------------------------------------------------------------~~~~~~~------------  267 (497)
                                                                                   .+.+++.            
T Consensus       245 l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (542)
T 1w4x_A          245 FREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAE  324 (542)
T ss_dssp             HHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             HHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                                                                         0111111            


Q ss_pred             -----------------------HHHCCcEEE--cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchh
Q 010917          268 -----------------------YQQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  322 (497)
Q Consensus       268 -----------------------l~~~GV~i~--~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~  322 (497)
                                             +.+.+|+++  .+..|++++++      +|.++| +++++|.||+|||+++++.++.
T Consensus       325 ~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~~d-~~~~~D~ii~atG~~~~~~~~~  397 (542)
T 1w4x_A          325 RLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRTSE-REYELDSLVLATGFDALTGALF  397 (542)
T ss_dssp             HHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEESS-CEEECSEEEECCCCCCTTHHHH
T ss_pred             hcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEeCC-eEEecCEEEEcCCccccccCcC
Confidence                                   112357776  36678888743      578889 8999999999999999888877


Q ss_pred             hcCCcccCCCEEecCCCC----------C-CCCcEEEe-ccccccCCccCCcccccccH-HHHHHHHHHHHHHHhc
Q 010917          323 RVGLNSSVGGIQVDGQFR----------T-RMPGIFAI-GDVAAFPLKMYDRTARVEHV-DHARQSAQHCIKALLS  385 (497)
Q Consensus       323 ~~gl~~~~g~i~vd~~~~----------t-~~~~iya~-GD~~~~~~~~~g~~~~~~~~-~~A~~~g~~~a~~i~~  385 (497)
                      .+++... +++.+++.++          + +.||+|++ |+.+..         ...++ ..+..|++.++++|..
T Consensus       398 ~~~i~g~-~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~---------~~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          398 KIDIRGV-GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPS---------ALSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             TSEEECG-GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSG---------GGSCHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeECC-CCCCHHHhhcCchheecccccCCCCceEEEcCCCCCc---------ccccHHHHHHHHHHHHHHHHHH
Confidence            6655443 3555554332          1 45666665 655421         12244 5688899999998853

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.88  E-value=7.2e-22  Score=175.35  Aligned_cols=153  Identities=22%  Similarity=0.229  Sum_probs=130.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------cc-----CHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~-----~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +++|||+|++|+++|..|++.|.+|+++++.+.++.+        .+     ++++.+.+.+.+++.||+++.+ +|+++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6899999999999999999999999999998766532        12     4688889999999999999999 99999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCccc
Q 010917          285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  364 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~  364 (497)
                      +..+++  ..+.+++| ++++|.||+|+|..|+  +++.++++.++|.+.||++++|+.|+|||+|||+..+.+      
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~~------  150 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPG------  150 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCSC------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCccCceEEeCCCCCcCCCCEEEeecccCcchh------
Confidence            865433  35777888 8999999999999984  567788887767788999999999999999999987532      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 010917          365 RVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       365 ~~~~~~~A~~~g~~~a~~i~~  385 (497)
                         .+..|..+|+.+|.+|.+
T Consensus       151 ---~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          151 ---HAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHhHHHHHHHHHH
Confidence               556789999999999975

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.85  E-value=1.1e-19  Score=186.93  Aligned_cols=293  Identities=16%  Similarity=0.202  Sum_probs=164.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCC-----------CCcEEEEcCCCCCCCCCCCCCccc------cCC----CC-C
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMA-----------DGRLCIVSKEAYAPYERPALTKGY------LFP----LD-K  115 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~-----------~~~V~lie~~~~~~~~~~~l~~~~------l~~----~~-~  115 (497)
                      ...+||||||+||+||++|..|.+.|.+           ....+.+|+.+.+.++...+..+.      +..    .. .
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~  116 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPR  116 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCC
Confidence            4457999999999999999999986532           235788999887666533222111      000    00 0


Q ss_pred             CCCCCC----------CCccc-----cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC----------CEEEECCC---
Q 010917          116 KPARLP----------GFHTC-----VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK----------QTLITNSG---  167 (497)
Q Consensus       116 ~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~----------~~v~~~~g---  167 (497)
                      .+..+.          .|...     ...++..++....++.+..++++++|+++.+..          .+|++.++   
T Consensus       117 s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g  196 (501)
T 4b63_A          117 SSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETG  196 (501)
T ss_dssp             CTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTC
T ss_pred             CccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCc
Confidence            000000          00000     000011111222234466788899999986532          35665543   


Q ss_pred             --cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH-HHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC--CCcE
Q 010917          168 --KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDT  242 (497)
Q Consensus       168 --~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~-~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~V  242 (497)
                        .++.++.||+|||..|. +|...+. .+.+.+...+.+. +.+......+|+|+|||+|.+|+|++..|++.  +.+|
T Consensus       197 ~~~~~~ar~vVlatG~~P~-iP~~~~~-~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v  274 (501)
T 4b63_A          197 EISARRTRKVVIAIGGTAK-MPSGLPQ-DPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRT  274 (501)
T ss_dssp             CEEEEEEEEEEECCCCEEC-CCTTSCC-CTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEE
T ss_pred             eEEEEEeCEEEECcCCCCC-CCCCCCC-CcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceE
Confidence              36889999999998776 4433322 2344443333322 22222234789999999999999999999875  6799


Q ss_pred             EEEecCCcchhh--------ccCHHH-------------------------------HHHHHHHH-----H-----HCCc
Q 010917          243 TIIFPENHLLQR--------LFTPSL-------------------------------AQRYEQLY-----Q-----QNGV  273 (497)
Q Consensus       243 tlv~~~~~~~~~--------~~~~~~-------------------------------~~~~~~~l-----~-----~~GV  273 (497)
                      +++.|++.+.+.        .+.++.                               ...+.+.+     .     ....
T Consensus       275 ~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~  354 (501)
T 4b63_A          275 TLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQH  354 (501)
T ss_dssp             EEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSS
T ss_pred             EEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccce
Confidence            999998654321        111111                               11111111     1     1123


Q ss_pred             EEEcCCeEEEEEeCCC-CcE-----------EEEEeCCCcEEEcCEEEEeccCcCCCcc-h-hhcC-Cc-ccCCCEEecC
Q 010917          274 KFVKGASIKNLEAGSD-GRV-----------AAVKLEDGSTIDADTIVIGIGAKPTVSP-F-ERVG-LN-SSVGGIQVDG  337 (497)
Q Consensus       274 ~i~~~~~v~~i~~~~~-~~v-----------~~v~~~~g~~i~~D~vv~a~G~~p~~~~-~-~~~g-l~-~~~g~i~vd~  337 (497)
                      .+..+..+..+..... +++           ..+.+.+|+++++|.||+|||++++... + ..+. +. ..+|...|+.
T Consensus       355 ~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~r  434 (501)
T 4b63_A          355 RILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHR  434 (501)
T ss_dssp             EEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCT
T ss_pred             eecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCC
Confidence            5666666666653322 221           1345678899999999999999988531 2 2111 11 2356777877


Q ss_pred             CCCC--------CCCcEEEeccc
Q 010917          338 QFRT--------RMPGIFAIGDV  352 (497)
Q Consensus       338 ~~~t--------~~~~iya~GD~  352 (497)
                      +++.        ..++||+.|-+
T Consensus       435 dy~~~~~~~~~~~~~~i~~qg~~  457 (501)
T 4b63_A          435 DYRVEMDPSKVSSEAGIWLQGCN  457 (501)
T ss_dssp             TSBBCCCTTTBCTTCEEEECSCC
T ss_pred             CcEEeecCCccCCCceEEecCCC
Confidence            6553        24679999944

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.71  E-value=5.9e-20  Score=187.59  Aligned_cols=223  Identities=15%  Similarity=0.114  Sum_probs=128.4

Q ss_pred             HHHHcCcEEEeCCcEEEEecCCCEE---EEC-CCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH----
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQTL---ITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL----  209 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~~v---~~~-~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~----  209 (497)
                      .+++.|++++.+++| .+..++..+   .+. ++..+.+|.||+|||+.+..++...+.  ++ .+...+..+.+.    
T Consensus       128 ~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~--~~-~tGdgi~~a~~aGa~~  203 (472)
T 2e5v_A          128 LAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQ--ST-NIGDGMAIAFKAGTIL  203 (472)
T ss_dssp             HHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSC--TT-CSCHHHHHHHHTTCCE
T ss_pred             HHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCC--CC-CchHHHHHHHHcCCCE
Confidence            345679999999889 887665543   332 233578999999999987643321110  11 011000001100    


Q ss_pred             --HHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHH--------HHHHHHHHHHHCCcEEEcCC
Q 010917          210 --ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS--------LAQRYEQLYQQNGVKFVKGA  279 (497)
Q Consensus       210 --~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~--------~~~~~~~~l~~~GV~i~~~~  279 (497)
                        .+.......++++|+|  +++++..+...|..+ +..+.++++++ +++.        +...+.+.+++.|. ++.+.
T Consensus       204 ~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~  278 (472)
T 2e5v_A          204 ADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFIDL  278 (472)
T ss_dssp             ECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEEEC
T ss_pred             eCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEEec
Confidence              0001111234455766  888888899999877 78888888865 3333        25566666666653 22221


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEeccCcCCCcchhhcCC-cccCCCEEecCCCCCCCCcEEEeccccccCC
Q 010917          280 SIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGL-NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  357 (497)
Q Consensus       280 ~v~~i~~~~~~~v~~v~~~~g~~i~-~D~vv~a~G~~p~~~~~~~~gl-~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~  357 (497)
                      +.  +    +.      +  .+.++ .|.++++.|..|+ +++..... ....|+|.||+++||+.|+|||+|||+....
T Consensus       279 ~~--~----~~------~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~  343 (472)
T 2e5v_A          279 SK--I----ED------F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGL  343 (472)
T ss_dssp             TT--C----TT------H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSS
T ss_pred             cc--h----HH------H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhccccc
Confidence            10  0    00      0  01233 4667788899998 65442211 1236899999999999999999999987321


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          358 KMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       358 ~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ....+. ...+...+...|+.++.++.+
T Consensus       344 hg~~rl-~~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          344 HGANRL-ASNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             STTSCC-TTHHHHHHHHHHHHGGGTTTS
T ss_pred             CCCCCC-CcccHHHHHHHHHHHHHHHHh
Confidence            100111 112344566677777777653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.64  E-value=6e-15  Score=136.07  Aligned_cols=155  Identities=18%  Similarity=0.243  Sum_probs=112.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC-----------------cchhhccC-------HHHHHHHHHHHHHC-
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-----------------HLLQRLFT-------PSLAQRYEQLYQQN-  271 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-----------------~~~~~~~~-------~~~~~~~~~~l~~~-  271 (497)
                      .+|+|||+|+.|+++|..|++.|.+|+++++..                 .+... ++       ..+...+.+.+++. 
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~-~~d~~g~~~~~~~~~l~~~~~~~~   82 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLER-AYDPKDERVWAFHARAKYLLEGLR   82 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHH-HCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhh-hccCCCCCHHHHHHHHHHHHHcCC
Confidence            479999999999999999999999999999872                 22221 21       26667788888887 


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC--------------------cc---hhhcCCcc
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV--------------------SP---FERVGLNS  328 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~--------------------~~---~~~~gl~~  328 (497)
                      |++++ +.+|+++... ++.+..+.+.+|+++++|.||+|+|..++.                    .+   +.+.++..
T Consensus        83 gv~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~  160 (232)
T 2cul_A           83 PLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRF  160 (232)
T ss_dssp             TEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCE
T ss_pred             CcEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeE
Confidence            99999 4689999864 456667888899889999999999995442                    22   23444443


Q ss_pred             cCCC----------------EEecC-------CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          329 SVGG----------------IQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       329 ~~g~----------------i~vd~-------~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ..+.                ..+..       ...|++|+|||+|||+ ...          .+..|..||+.+|.+|+.
T Consensus       161 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g----------~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          161 VEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG----------DYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC----------CHHHHHHHHHHHHHHHHH
T ss_pred             EccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc----------cHHHHHHHHHHHHHHHHh
Confidence            2111                00110       1126899999999999 432          455688999999999974

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.52  E-value=6.9e-16  Score=154.05  Aligned_cols=121  Identities=20%  Similarity=0.199  Sum_probs=73.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCCc------cccCCCCCCCC--------
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK------GYLFPLDKKPA--------  118 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-------~~~~l~~------~~l~~~~~~~~--------  118 (497)
                      .+||+|||||+||++||..|+++|.   +|+|+|+.+....       .+..+..      .++........        
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~---~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN   80 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCC---CEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCH
Confidence            4799999999999999999999997   8999999875310       0111100      01100000000        


Q ss_pred             ----------CCC------CCccc--cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC----CC--EEEECCCcEEEecc
Q 010917          119 ----------RLP------GFHTC--VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE----KQ--TLITNSGKLLKYGS  174 (497)
Q Consensus       119 ----------~~~------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~g~~i~~d~  174 (497)
                                .++      +....  ........+.+.+++.|++++++++|+++..+    ..  .+.++++ ++.+|+
T Consensus        81 ~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~  159 (401)
T 2gqf_A           81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKN  159 (401)
T ss_dssp             HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESE
T ss_pred             HHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCE
Confidence                      000      00000  00000112334456679999999999988754    22  4666665 699999


Q ss_pred             EEeccCCCCC
Q 010917          175 LIVATGCTAS  184 (497)
Q Consensus       175 lvlAtG~~~~  184 (497)
                      ||+|||+.+.
T Consensus       160 VVlAtG~~s~  169 (401)
T 2gqf_A          160 LIVATGGLSM  169 (401)
T ss_dssp             EEECCCCSSC
T ss_pred             EEECCCCccC
Confidence            9999999874

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.23  E-value=1.5e-12  Score=131.62  Aligned_cols=95  Identities=17%  Similarity=0.266  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc--------CcCCCcchhh--cCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--------AKPTVSPFER--VGL  326 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G--------~~p~~~~~~~--~gl  326 (497)
                      +..+...+...+++.| ++++++.|++|+..++ .+ .|.+.+|+++.+|.||+|+|        +.|+.+....  ++.
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~  279 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGD-VV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE  279 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSS-SE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCC-eE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence            3344556666667778 9999999999986544 34 47888898899999999999        8888765322  211


Q ss_pred             cccCCCEEecCCCCCCCCcEEEeccccc
Q 010917          327 NSSVGGIQVDGQFRTRMPGIFAIGDVAA  354 (497)
Q Consensus       327 ~~~~g~i~vd~~~~t~~~~iya~GD~~~  354 (497)
                      ......++|+..++|+.++||+.||+..
T Consensus       280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          280 GHGGQGLKILIHVRGAEAGIECVGDGIF  307 (431)
T ss_dssp             CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred             CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence            1223469999999999999999999853

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.21  E-value=4.9e-11  Score=113.24  Aligned_cols=164  Identities=17%  Similarity=0.181  Sum_probs=110.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcchhh------------------------------------c-cCH
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR------------------------------------L-FTP  258 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~------------------------------------~-~~~  258 (497)
                      .+|+|||+|++|+.+|..|++. |.+|+++++.+.+...                                    . ...
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 9999999988654210                                    0 113


Q ss_pred             HHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeC---------CC-----cEEEcCEEEEeccCcCCCcc---
Q 010917          259 SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-----STIDADTIVIGIGAKPTVSP---  320 (497)
Q Consensus       259 ~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~---------~g-----~~i~~D~vv~a~G~~p~~~~---  320 (497)
                      .+...+.+.+.+ .||+++++++|+++..+ ++++..+.+.         +|     .++++|.||+|+|..++...   
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~  198 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV  198 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence            444556666655 69999999999999854 4555555542         32     57999999999998876432   


Q ss_pred             --hhhcC----CcccCCCEEecC-------CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          321 --FERVG----LNSSVGGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       321 --~~~~g----l~~~~g~i~vd~-------~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                        +..++    +... .++.+|.       +.+++.|++|++||++...   .+.......+..+..+|+.+|.++..
T Consensus       199 ~~~~~~g~~~~v~~~-~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~  272 (284)
T 1rp0_A          199 KRLKSIGMIDHVPGM-KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALK  272 (284)
T ss_dssp             HHHHHTTSSSCCCCC-EEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCcCCc-CCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHH
Confidence              22222    1111 2343332       3456779999999987431   11111112456678899999988875

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.17  E-value=5.3e-11  Score=104.85  Aligned_cols=107  Identities=18%  Similarity=0.202  Sum_probs=74.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  139 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  139 (497)
                      ++|+|||||++|+++|..|++.|.   +|+|+|+.+........+            ..+++++. ..+......+.+.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~---~v~lie~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~   66 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL---KVLVLDGGRSKVKGVSRV------------PNYPGLLDEPSGEELLRRLEAHA   66 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCTTTTCSCC------------CCSTTCTTCCCHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCcccCchhh------------hccCCCcCCCCHHHHHHHHHHHH
Confidence            689999999999999999999987   899999986432110000            01111100 00011122345566


Q ss_pred             HHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.|++++.+ +|++++.+.  ..+.+++| ++.+|.||+|+|..|.
T Consensus        67 ~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           67 RRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT  111 (180)
T ss_dssp             HHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred             HHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence            7789999998 999987644  36777777 7999999999999874

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.11  E-value=6.7e-10  Score=114.79  Aligned_cols=160  Identities=15%  Similarity=0.090  Sum_probs=92.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC-CCCCCCCCCCccccC-----------CCC------C--CC-
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA-YAPYERPALTKGYLF-----------PLD------K--KP-  117 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~-~~~~~~~~l~~~~l~-----------~~~------~--~~-  117 (497)
                      ..+||+|||||+||++||..|++.|.   +|+|||+.. ......+..+.+...           +..      .  .. 
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~---kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f  102 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGA---KTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF  102 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence            35899999999999999999999997   899999974 221110100000000           000      0  00 


Q ss_pred             -----CCCCCCcc---c-cCCCCCCCCHhHHHH-cCcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCCCCC
Q 010917          118 -----ARLPGFHT---C-VGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       118 -----~~~~~~~~---~-~~~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                           ..-+....   . ....+...+.+.+++ .|++++ +++|+.+..++.   .|.+.+|..+.+|.||+|||..+.
T Consensus       103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence                 00000000   0 000000112233445 489985 579999876554   367788888999999999998765


Q ss_pred             cCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe
Q 010917          185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  246 (497)
Q Consensus       185 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~  246 (497)
                      . +..+     |....              .+.+    .|+.+++++|..|.+.|.+++.+.
T Consensus       182 ~-~~~~-----G~~~~--------------~~Gr----~G~~~A~~la~~L~~lG~~v~~l~  219 (637)
T 2zxi_A          182 G-VIYI-----GDKMI--------------PGGR----LGEPRSEGLSDFYRRFDFPLIRFK  219 (637)
T ss_dssp             C-EEEE-----TTEEE--------------ECSB----TTBCCBCTHHHHHHHTTCCCEEEE
T ss_pred             C-ceec-----cceec--------------CCCC----CCchhHHHHHHHHHhcCCceEEec
Confidence            3 2222     22221              1122    235678899999999998776553

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.09  E-value=1.5e-11  Score=126.29  Aligned_cols=169  Identities=15%  Similarity=-0.027  Sum_probs=97.2

Q ss_pred             eecccccccCccccc---CCCCcccccCC-CCchhhhcccccc------------------cccccCCCCCcEEEEcCch
Q 010917           13 VSNSLSFKHGLSLWC---PQSPSLHRIRH-SSAKNFQRRGFVV------------------AYSSFANENREFVIVGGGN   70 (497)
Q Consensus        13 ~~~~~~~~~g~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~VvIIGgG~   70 (497)
                      .+||||.+||+.|+.   +|...|.+... ++.+..+++.+..                  .........+||+|||||+
T Consensus        23 ~~~~~~~~~~rvc~~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~  102 (497)
T 2bry_A           23 ETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGP  102 (497)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccH
Confidence            678999999998876   46666666331 1222222221111                  0111134568999999999


Q ss_pred             HHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCcc---ccCCCCC--CCCCC--CCCccccCCCCCCCCHhHHHHc
Q 010917           71 AAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKG---YLFPLDK--KPARL--PGFHTCVGSGGERQTPEWYKEK  142 (497)
Q Consensus        71 AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~---~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~  142 (497)
                      +|+++|..|++.|+   +|+|||+.+...-.+. .+...   .+.....  ....+  ..+.......+...+.+.+++.
T Consensus       103 aGl~aA~~La~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  179 (497)
T 2bry_A          103 CGLRAAVELALLGA---RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLL  179 (497)
T ss_dssp             HHHHHHHHHHHTTC---EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCC---eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhC
Confidence            99999999999997   8999999865421100 00000   0000000  00000  0000000000011233445567


Q ss_pred             CcEEEeCCcEEEEecC-----CCEEEE--C-CC--cEEEeccEEeccCCCCC
Q 010917          143 GIEMIYQDPVTSIDIE-----KQTLIT--N-SG--KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       143 ~v~~~~~~~v~~i~~~-----~~~v~~--~-~g--~~i~~d~lvlAtG~~~~  184 (497)
                      |++++++++|+++..+     ...+++  . +|  .++.+|+||+|+|..+.
T Consensus       180 gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          180 GVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             TCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             CCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            9999999999999763     235666  3 55  46899999999998764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.07  E-value=3.1e-10  Score=118.90  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+||||||||+||++||..|++.|. +.+|+|||+.+
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~-~~~V~vlEk~~   40 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVY   40 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCC-CCcEEEEeCCC
Confidence            4799999999999999999999982 23899999975

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.98  E-value=5.2e-10  Score=116.03  Aligned_cols=160  Identities=12%  Similarity=0.111  Sum_probs=90.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCCccccC-----------CCC------------
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYLF-----------PLD------------  114 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~-~~~~~~~l~~~~l~-----------~~~------------  114 (497)
                      ..+||+|||||+||++||..|++.|.   +|+|||+... .....+..+.+...           ...            
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQ---QTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCC---CEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            35899999999999999999999998   8999999742 21110100110000           000            


Q ss_pred             CC--CCCCCCCcc----ccCCCCCCCCHhHHHH-cCcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCCCCC
Q 010917          115 KK--PARLPGFHT----CVGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       115 ~~--~~~~~~~~~----~~~~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ..  ...-+....    .....+...+.+.+++ .|++++ +++|+.+..++.   .|.+.+|..+.+|.||+|||+.+.
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            00  000000000    0000000112234455 589995 579999976544   467778888999999999998765


Q ss_pred             cCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe
Q 010917          185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  246 (497)
Q Consensus       185 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~  246 (497)
                      . +..     +|....              .+.+   +| |.+++++|..|.+.|.+|+.+.
T Consensus       183 ~-~~i-----~G~~~~--------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          183 G-KIH-----IGLDNY--------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             C-EEE-----CC-------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred             C-ccc-----cCcccC--------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence            3 222     222211              1222   46 7889999999999999998874

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.97  E-value=2.4e-10  Score=117.26  Aligned_cols=147  Identities=14%  Similarity=0.102  Sum_probs=102.7

Q ss_pred             EeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH---------HHh--hccCCeEEEEcCCHHHHHHHHHHHhCC
Q 010917          171 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL---------ISS--LEKAKKVVVVGGGYIGMEVAAAAVGWK  239 (497)
Q Consensus       171 ~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~---------~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g  239 (497)
                      .||.+++++|+.+.. +.+++...+++.......+...+         ...  .....+|+|||||+.|+.+|..|++.|
T Consensus        37 ~~~~l~~~~g~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G  115 (497)
T 2bry_A           37 SFQGLCRALGVESGG-GLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG  115 (497)
T ss_dssp             HHHHHHHHHTCCTTC-HHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCC-CcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence            578899999999753 33333333344444444444443         111  123578999999999999999999999


Q ss_pred             CcEEEEecCCcchhh--------------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC
Q 010917          240 LDTTIIFPENHLLQR--------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  287 (497)
Q Consensus       240 ~~Vtlv~~~~~~~~~--------------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  287 (497)
                      .+|+|+++.+.+...                                .-...+...+.+.+++.||+++++++|++++..
T Consensus       116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~  195 (497)
T 2bry_A          116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPP  195 (497)
T ss_dssp             CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECC
T ss_pred             CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe
Confidence            999999988653200                                001456667788888899999999999999853


Q ss_pred             C-CCcEEEEEe--C-CC--cEEEcCEEEEeccCcCCC
Q 010917          288 S-DGRVAAVKL--E-DG--STIDADTIVIGIGAKPTV  318 (497)
Q Consensus       288 ~-~~~v~~v~~--~-~g--~~i~~D~vv~a~G~~p~~  318 (497)
                      + ++....+.+  . +|  +++.+|.||.|+|..+..
T Consensus       196 ~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          196 PRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             CSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             cCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            2 222234555  4 66  579999999999998765

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.96  E-value=8.2e-10  Score=113.69  Aligned_cols=58  Identities=26%  Similarity=0.373  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      ...+.+.+.+.+++.|++|++++.|++|... ++++..|++.||+++.+|.||++++..
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            3467788889999999999999999999865 678889999999999999999987653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.96  E-value=1.5e-08  Score=99.66  Aligned_cols=68  Identities=13%  Similarity=0.269  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcchhhc-CC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV-GL  326 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~~~~~-gl  326 (497)
                      +..+...+.+.+++.|++++++++|++++..+++.+ .|.+.+|  .++.+|.||+|+|.... .+++.+ |+
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~  219 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGI  219 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETS
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCC
Confidence            346777888889999999999999999987644434 4778887  48999999999998743 555655 54

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.95  E-value=5.8e-10  Score=111.50  Aligned_cols=124  Identities=20%  Similarity=0.274  Sum_probs=73.3

Q ss_pred             cCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CCCCC------ccccCCCCCCC-----
Q 010917           56 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RPALT------KGYLFPLDKKP-----  117 (497)
Q Consensus        56 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-------~~~l~------~~~l~~~~~~~-----  117 (497)
                      |++..+||+|||||+||++||..|+++|+   +|+|+|+.+.....       +..+.      ..+........     
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~---~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~   99 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGR---RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALA   99 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHH
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHH
Confidence            44567899999999999999999999998   89999998753210       00000      00000000000     


Q ss_pred             -------------------CCCCCCcccc--CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEecc
Q 010917          118 -------------------ARLPGFHTCV--GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS  174 (497)
Q Consensus       118 -------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~  174 (497)
                                         ..-.+.....  .....+.+.+.+++.|++++++++|+++..++.  .|.+.+| ++.+|+
T Consensus       100 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~  178 (417)
T 3v76_A          100 RYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAAS  178 (417)
T ss_dssp             HSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESE
T ss_pred             hcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeE
Confidence                               0000000000  000111233445667999999999999976554  5666677 799999


Q ss_pred             EEeccCCCC
Q 010917          175 LIVATGCTA  183 (497)
Q Consensus       175 lvlAtG~~~  183 (497)
                      ||+|||...
T Consensus       179 VIlAtG~~S  187 (417)
T 3v76_A          179 LVVASGGKS  187 (417)
T ss_dssp             EEECCCCSS
T ss_pred             EEECCCCcc
Confidence            999999875

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.92  E-value=1.2e-09  Score=100.47  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCC-CCCccccCC---CCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL-PGFHTCVGS---GGERQT  135 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~~~~~~---~~~~~~  135 (497)
                      .+||+|||||++|+++|..|++.|.   +|+|||+...... .+ ... .... .. ...+ ..+....+.   .+...+
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~---~v~lie~~~~~~G-~~-~~~-~~~~-~~-~~~~~~~~~d~~g~~~~~~~~~l   74 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVM-MP-FLP-PKPP-FP-PGSLLERAYDPKDERVWAFHARA   74 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTT-CC-SSC-CCSC-CC-TTCHHHHHCCTTCCCHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCcCC-cc-cCc-cccc-cc-hhhHHhhhccCCCCCHHHHHHHH
Confidence            5799999999999999999999987   8999999732110 00 000 0000 00 0000 000000000   001123


Q ss_pred             HhHHHHc-CcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCCCCC
Q 010917          136 PEWYKEK-GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       136 ~~~~~~~-~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      .+.+++. +++++. ++|+++..++.   .+.+.+|.++.+|+||+|||....
T Consensus        75 ~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           75 KYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             HHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            3445565 899884 69999876544   366778888999999999998654

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.91  E-value=3.7e-11  Score=126.24  Aligned_cols=59  Identities=14%  Similarity=0.278  Sum_probs=46.2

Q ss_pred             HHCCcEEEcCCeEEEEEeCCC-CcEEEEEeC---CCc--EEEcCEEEEeccCcCCCcchhhcCCc
Q 010917          269 QQNGVKFVKGASIKNLEAGSD-GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       269 ~~~GV~i~~~~~v~~i~~~~~-~~v~~v~~~---~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~  327 (497)
                      ++.||++++++.|++|..+++ +++.+|.+.   +|+  ++.+|.||+|+|..|+..++..+|+-
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG  335 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG  335 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence            345899999999999986533 367777764   354  68899999999999998888776653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.87  E-value=1.8e-09  Score=106.96  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---------------CCccccCCCCCCCCC----
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---------------LTKGYLFPLDKKPAR----  119 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~---------------l~~~~l~~~~~~~~~----  119 (497)
                      ..+||+|||||++|+++|..|++.|+   +|+|+|+.+........               +...+.. .......    
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~   85 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGW---DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQ-GSHTPPTYETW   85 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHT-TCBCCSCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHh-hCCCccceEEE
Confidence            35799999999999999999999998   89999998654211000               0000000 0000000    


Q ss_pred             --------CC--CCc--cccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          120 --------LP--GFH--TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       120 --------~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                              ++  +..  ......+...+.+.+.+.|++++.+++|+.++.+. .+++.+|+++.+|.||.|+|....
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence                    00  000  00000001122344456799999999999998755 888888988999999999998753

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.86  E-value=6.1e-09  Score=107.13  Aligned_cols=124  Identities=18%  Similarity=0.218  Sum_probs=76.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------------CCC---CCCC-cc-ccCCCCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--------------YER---PALT-KG-YLFPLDKKPA  118 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--------------~~~---~~l~-~~-~l~~~~~~~~  118 (497)
                      ...+||+||||||+|++||..|++.|+   +|+|+|+.+...              +..   .... .+ ..+.......
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~---kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~  181 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGF---NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYS  181 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEE
Confidence            345899999999999999999999998   899999985320              000   0000 00 0000000000


Q ss_pred             CCCC--C--------------c-cc--cC---------CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC---EEEECCC
Q 010917          119 RLPG--F--------------H-TC--VG---------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSG  167 (497)
Q Consensus       119 ~~~~--~--------------~-~~--~~---------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~g  167 (497)
                      .+..  .              . ..  ..         ..+...+.+.+++.|++++++++|+.+..+..   .|.+++|
T Consensus       182 ~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G  261 (549)
T 3nlc_A          182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG  261 (549)
T ss_dssp             CSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS
T ss_pred             EeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC
Confidence            0000  0              0 00  00         00011223345667999999999999987654   3778888


Q ss_pred             cEEEeccEEeccCCCCC
Q 010917          168 KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       168 ~~i~~d~lvlAtG~~~~  184 (497)
                      +++.+|.||+|+|..+.
T Consensus       262 ~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          262 EEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             CEEECSCEEECCCTTCH
T ss_pred             CEEECCEEEECCCCChh
Confidence            89999999999999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.85  E-value=8.9e-08  Score=102.23  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeccCcCCCcchhhcCC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vv~a~G~~p~~~~~~~~gl  326 (497)
                      ..+...+.+.+++.|++++++++|+++...+++ + .|.+.+|+ ++.+|.||+|+|.... .++...++
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v-~V~t~~G~~~i~Ad~VVlAtG~~s~-~l~~~~~l  478 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-W-QLTFGQSQAAKHHATVILATGHRLP-EWEQTHHL  478 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-E-EEEEC-CCCCEEESEEEECCGGGTT-CSTTTTTS
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-E-EEEeCCCcEEEECCEEEECCCcchh-ccccccCC
Confidence            467778888889999999999999999876444 3 67888887 8999999999998743 34433333

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.84  E-value=6.3e-08  Score=101.00  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeccCcCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  317 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vv~a~G~~p~  317 (497)
                      ...+...+.+.+++.||++++++.++++..++++++.+|...  +|+  ++.+|.||+|+|..++
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            346777888888999999999999999975532777666664  564  6899999999997653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.83  E-value=3.8e-09  Score=106.99  Aligned_cols=123  Identities=19%  Similarity=0.293  Sum_probs=74.6

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCCc-----ccc--CCCCCC-CC----
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-----GYL--FPLDKK-PA----  118 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-------~~~~l~~-----~~l--~~~~~~-~~----  118 (497)
                      .+++||+|||||+||++||..|+++|.   +|+|+|+.+...-       .+..+..     .++  ...... ..    
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS  100 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCC---CEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHH
Confidence            345899999999999999999999987   8999999864320       0000000     000  000000 00    


Q ss_pred             CC-----------CCCcc--------cc----CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC---EEEECCCcEEEe
Q 010917          119 RL-----------PGFHT--------CV----GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKY  172 (497)
Q Consensus       119 ~~-----------~~~~~--------~~----~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~  172 (497)
                      .+           .+...        +.    .......+.+.+++.|++++++++|+++..++.   .|.+.+|+.+.+
T Consensus       101 ~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~A  180 (447)
T 2i0z_A          101 IFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLET  180 (447)
T ss_dssp             HSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEEC
T ss_pred             hcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEEC
Confidence            00           00000        00    000011223445667999999999999975443   477788877999


Q ss_pred             ccEEeccCCCC
Q 010917          173 GSLIVATGCTA  183 (497)
Q Consensus       173 d~lvlAtG~~~  183 (497)
                      |.||+|||...
T Consensus       181 d~VVlAtGg~s  191 (447)
T 2i0z_A          181 NHVVIAVGGKS  191 (447)
T ss_dssp             SCEEECCCCSS
T ss_pred             CEEEECCCCCc
Confidence            99999999876

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.83  E-value=2.4e-08  Score=100.20  Aligned_cols=67  Identities=15%  Similarity=0.188  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeccCcCCCcchhhcCCc
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~  327 (497)
                      .+...+.+.+++.|++++.+++|++++..+++....+.+.+|+  ++.+|.||.|+|...  .+.+.+++.
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s--~l~~~~g~~  175 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR--VIPRMFGLD  175 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC--HHHHHTTCE
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch--hhHHhcCCC
Confidence            4555666777778999999999999987655555567778887  799999999999875  333444443

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.81  E-value=1.6e-08  Score=105.08  Aligned_cols=59  Identities=20%  Similarity=0.377  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          258 PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       258 ~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+...+.+.+++. ||+++.+ +|++++..+++.+..|.+.+|+++.+|.||.|+|....
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            35677788888888 9999999 99999876567777888999989999999999998764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.80  E-value=1.2e-07  Score=101.17  Aligned_cols=57  Identities=14%  Similarity=0.213  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      ..+...+.+.+++.|++++++++|+++...+ +.+ .|.+.+|.++.+|.||+|+|...
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~v-~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKD-DCW-LLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC-CeE-EEEECCCCEEECCEEEECCCcch
Confidence            4677788888899999999999999998653 343 67888888899999999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.77  E-value=3.7e-08  Score=101.28  Aligned_cols=111  Identities=15%  Similarity=0.294  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  254 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..+                                         
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            468999999999999999999999999999987543000                                         


Q ss_pred             ------------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEE
Q 010917          255 ------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  304 (497)
Q Consensus       255 ------------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~  304 (497)
                                                    .....+.+.+.+.+++.|++++++++|+++... ++.+..|.+.+|+++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETTSCEEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECCCCEEE
Confidence                                          001345566778888899999999999999864 5667789999999999


Q ss_pred             cCEEEEeccCcCCC--cchhhcCCc
Q 010917          305 ADTIVIGIGAKPTV--SPFERVGLN  327 (497)
Q Consensus       305 ~D~vv~a~G~~p~~--~~~~~~gl~  327 (497)
                      +|.||+|+|..+..  ..+...|+.
T Consensus       266 Ad~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          266 SRHVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             CSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred             CCEEEECCCCChhhHHHHHHHcCCC
Confidence            99999999998852  235555554

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.75  E-value=1.9e-07  Score=93.03  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                      ..+...+.+.+++.|++++.+++|+++... ++.+..+.+.+| ++.+|.||+|+|...+ .+.+.++
T Consensus       174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s~-~l~~~~g  238 (405)
T 2gag_B          174 DHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRG-TIHAGKVALAGAGHSS-VLAEMAG  238 (405)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTC-CEEEEEEEECCGGGHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCc-eEECCEEEECCchhHH-HHHHHcC
Confidence            367777888889999999999999999865 456667888887 6999999999998653 3444443

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.73  E-value=1.3e-07  Score=92.38  Aligned_cols=97  Identities=16%  Similarity=0.158  Sum_probs=78.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc----------------------c---------CHHHHHHHH
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------F---------TPSLAQRYE  265 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~----------------------~---------~~~~~~~~~  265 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+....                      .         ...+..++.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            479999999999999999999999999999886532110                      0         057788888


Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      +.+++.|++++.+++|++++.. ++.+..+.+.+| ++.+|.||+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence            8899999999999999999865 333322777777 89999999999963

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.73  E-value=4.6e-08  Score=97.41  Aligned_cols=123  Identities=12%  Similarity=0.075  Sum_probs=73.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCCcc---cc--CCC--CCCCCCCCCCccc-
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKG---YL--FPL--DKKPARLPGFHTC-  126 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l~~~---~l--~~~--~~~~~~~~~~~~~-  126 (497)
                      +.+++|+|||||++|+++|..|++.|+   +|+|+|+.+.....+.   .+...   .+  ...  ............. 
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   79 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD   79 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEe
Confidence            345799999999999999999999998   8999999865311100   00000   00  000  0000000000000 


Q ss_pred             --cCCC-------C--C--CCCHhHHHH--cCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCC
Q 010917          127 --VGSG-------G--E--RQTPEWYKE--KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       127 --~~~~-------~--~--~~~~~~~~~--~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                        .+..       .  .  ..+.+.+.+  .+++++++++|+++..+.  .++++.+|+++.+|.||.|+|...
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A           80 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  153 (397)
T ss_dssp             TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             cCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence              0000       0  0  011222222  388999999999997654  367788888899999999999864

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.73  E-value=9.8e-09  Score=102.34  Aligned_cols=122  Identities=14%  Similarity=0.200  Sum_probs=72.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC--C-------------ccc------------cCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL--T-------------KGY------------LFP  112 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l--~-------------~~~------------l~~  112 (497)
                      ++||+|||||++|+++|..|+++|+   +|+|+|+.+.........  .             ..+            ...
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~---~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   82 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGH---RVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYH   82 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeC
Confidence            4799999999999999999999998   899999986531110000  0             000            000


Q ss_pred             CCCCCCCCC--C-----CccccC-CCCCCCCHhHHHHc-CcEEEeCCcEEEEecCCC----EEEECCCcEEEeccEEecc
Q 010917          113 LDKKPARLP--G-----FHTCVG-SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVAT  179 (497)
Q Consensus       113 ~~~~~~~~~--~-----~~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~----~v~~~~g~~i~~d~lvlAt  179 (497)
                      .......+.  .     +..... ..+...+.+.+.+. |++++.+++|++++.+..    .+++.+|+++.+|.||.|+
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~Ad  162 (399)
T 2x3n_A           83 DGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGAD  162 (399)
T ss_dssp             TTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECC
T ss_pred             CCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECC
Confidence            000000000  0     000000 00000111223334 899999999999976543    6778888889999999999


Q ss_pred             CCCCC
Q 010917          180 GCTAS  184 (497)
Q Consensus       180 G~~~~  184 (497)
                      |....
T Consensus       163 G~~s~  167 (399)
T 2x3n_A          163 GIASY  167 (399)
T ss_dssp             CTTCH
T ss_pred             CCChH
Confidence            98653

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.72  E-value=2.2e-08  Score=101.41  Aligned_cols=66  Identities=23%  Similarity=0.393  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeC--------------CCCcEEEEEeCCCcEE--EcCEEEEeccCcCCCcch
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAG--------------SDGRVAAVKLEDGSTI--DADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~--------------~~~~v~~v~~~~g~~i--~~D~vv~a~G~~p~~~~~  321 (497)
                      ..+...+.+.+++.|++++.+++|++++..              +++.+..|.+.+| ++  .+|.||+|+|.... .++
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l~  258 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RLL  258 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HHH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HHH
Confidence            367788888899999999999999999861              2455656788888 58  99999999997643 344


Q ss_pred             hhcC
Q 010917          322 ERVG  325 (497)
Q Consensus       322 ~~~g  325 (497)
                      ..++
T Consensus       259 ~~~g  262 (448)
T 3axb_A          259 NPLG  262 (448)
T ss_dssp             GGGT
T ss_pred             HHcC
Confidence            4443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.72  E-value=8.4e-09  Score=106.63  Aligned_cols=48  Identities=10%  Similarity=0.133  Sum_probs=38.0

Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      ...++.|+++++++.|++|+.. ++.+. |.+.+|+++.+|.||++++..
T Consensus       220 ~l~~~lg~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          220 RIMDLLGDRVKLERPVIYIDQT-RENVL-VETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHHGGGEESSCCEEEEECS-SSSEE-EEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHcCCcEEcCCeeEEEEEC-CCeEE-EEECCCeEEEeCEEEECCCHH
Confidence            3344448899999999999865 34443 888899999999999999864

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.71  E-value=1.5e-08  Score=105.52  Aligned_cols=122  Identities=17%  Similarity=0.147  Sum_probs=71.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCccccCCCCCCCCC-CCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGYLFPLDKKPAR-LPG  122 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~~l~~~~~~~~~-~~~  122 (497)
                      +++||+||||||+|+++|..|+++|+   +|+|||+.+.......               .+...+.......... +.+
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~---~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~  124 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGV---GALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAG  124 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTC---CEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCC
Confidence            45799999999999999999999998   8999999865321100               0000000000000000 000


Q ss_pred             C-------ccccCCC-C---------CCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEE--CCC-cEEEeccEEeccC
Q 010917          123 F-------HTCVGSG-G---------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT--NSG-KLLKYGSLIVATG  180 (497)
Q Consensus       123 ~-------~~~~~~~-~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~--~~g-~~i~~d~lvlAtG  180 (497)
                      .       ....... .         ...+.+.+.+.|++++.+++|+.++.+..  ++++  .+| +++.+|+||.|.|
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG  204 (570)
T 3fmw_A          125 IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDG  204 (570)
T ss_dssp             BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSC
T ss_pred             cccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCC
Confidence            0       0000000 0         00122334456999999999999876554  4555  677 6899999999999


Q ss_pred             CCC
Q 010917          181 CTA  183 (497)
Q Consensus       181 ~~~  183 (497)
                      ...
T Consensus       205 ~~S  207 (570)
T 3fmw_A          205 GRS  207 (570)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.69  E-value=1e-08  Score=106.39  Aligned_cols=161  Identities=12%  Similarity=0.156  Sum_probs=91.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCCcccc-----------CCCC-----------
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYL-----------FPLD-----------  114 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~-~~~~~~~l~~~~l-----------~~~~-----------  114 (497)
                      ...+||+|||||+||++||..|++.|.   +|+|+|+... .....+..+.+..           .+..           
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~   95 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGL---HCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQ   95 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCC---cEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCc
Confidence            345899999999999999999999997   8999999742 1111000000000           0000           


Q ss_pred             -C--CCCCCCCCcc---ccC-CCCCCCCHhHHHH-cCcEEEeCCcEEEEecCCCE---EEECCCcEEEeccEEeccCCCC
Q 010917          115 -K--KPARLPGFHT---CVG-SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       115 -~--~~~~~~~~~~---~~~-~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                       .  ....-+....   ... ..+...+.+.+++ .|++++. .+|+.+..++..   |.+.+|..+.+|.||+|||+.+
T Consensus        96 f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A           96 FRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             EEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             hhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence             0  0000000000   000 0000112233444 3899865 589888765543   6677888899999999999876


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q 010917          184 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII  245 (497)
Q Consensus       184 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv  245 (497)
                      ....      ..+....              .+.+++   |+.++++++..|.+.|.+|..+
T Consensus       175 ~~~i------~~G~~~~--------------~~g~~v---G~~~a~~la~~L~~~G~kv~~l  213 (641)
T 3cp8_A          175 NGLI------HIGMDHF--------------PGGRST---AEPPVEGLTESLASLGFSFGRL  213 (641)
T ss_dssp             TCEE------EETTEEE--------------ECSSST---TSCCBCSHHHHHHHTTCCEEEE
T ss_pred             Cccc------eeeeeee--------------cccccc---CCchhhhhHHHHHhCCceEEee
Confidence            5321      1111111              011221   4577889999999999988654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.68  E-value=3.6e-08  Score=102.86  Aligned_cols=123  Identities=21%  Similarity=0.304  Sum_probs=73.3

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCc--------------------------ccc
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTK--------------------------GYL  110 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~--------------------------~~l  110 (497)
                      ++.+||+|||||+||+++|..|++.|+   +|+|||+.+....... .+..                          .+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~---~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   97 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGH---DVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFL   97 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCC---CEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEE
Confidence            446899999999999999999999998   8999999854322110 0000                          000


Q ss_pred             CCCCCCC--C----------CCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC-C--CEEEEC-CC--cEEEe
Q 010917          111 FPLDKKP--A----------RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITN-SG--KLLKY  172 (497)
Q Consensus       111 ~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~--~~v~~~-~g--~~i~~  172 (497)
                      .......  .          ..+.........+...+.+.+.+.|++++.+++|+.+..+ .  ..|++. +|  .++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~A  177 (591)
T 3i3l_A           98 WGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVES  177 (591)
T ss_dssp             CSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEE
T ss_pred             ecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEc
Confidence            0000000  0          0000000000000011223345679999999999999864 2  256665 66  57999


Q ss_pred             ccEEeccCCCC
Q 010917          173 GSLIVATGCTA  183 (497)
Q Consensus       173 d~lvlAtG~~~  183 (497)
                      |.||.|+|...
T Consensus       178 dlVV~AdG~~S  188 (591)
T 3i3l_A          178 DFVIDAGGSGG  188 (591)
T ss_dssp             SEEEECCGGGC
T ss_pred             CEEEECCCCcc
Confidence            99999999764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.68  E-value=4.6e-08  Score=95.26  Aligned_cols=118  Identities=17%  Similarity=0.237  Sum_probs=70.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCC----CC-C---C----CccccCCCCC----------
Q 010917           61 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYE----RP-A---L----TKGYLFPLDK----------  115 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~----~~-~---l----~~~~l~~~~~----------  115 (497)
                      +||+|||||++|+++|+.|++   .|+   +|+|+|+++.....    +. .   .    ...++.....          
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~---~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~   78 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPL---YLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD   78 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCE---EEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCc---eEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence            589999999999999999999   777   89999998643210    00 0   0    0000000000          


Q ss_pred             ------CCCCC----------CCCccccCCCCCCCCH-hHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEE
Q 010917          116 ------KPARL----------PGFHTCVGSGGERQTP-EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI  176 (497)
Q Consensus       116 ------~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lv  176 (497)
                            ....+          .....+........+. ...++.|++++++++|+++...+.  +|++++|+.+.+|+||
T Consensus        79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV  158 (342)
T 3qj4_A           79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV  158 (342)
T ss_dssp             HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred             HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence                  00000          0000111111112222 223345899999999999987543  6777788778999999


Q ss_pred             eccCC
Q 010917          177 VATGC  181 (497)
Q Consensus       177 lAtG~  181 (497)
                      +|+..
T Consensus       159 ~A~p~  163 (342)
T 3qj4_A          159 LTMPV  163 (342)
T ss_dssp             ECSCH
T ss_pred             ECCCH
Confidence            99974

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.67  E-value=7.6e-07  Score=89.72  Aligned_cols=58  Identities=24%  Similarity=0.278  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCC---eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGA---SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~---~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      ..+...+.+.+++.|+++++++   +|+++... ++.+.+|.+.+|+++.+|.||+|+|...
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            4677788888899999999999   99999864 5677779999998899999999999754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.67  E-value=2.4e-08  Score=94.58  Aligned_cols=122  Identities=10%  Similarity=0.106  Sum_probs=69.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCCCCCCCCCccccCC----CC--------CCCCC-CCCCc
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAPYERPALTKGYLFP----LD--------KKPAR-LPGFH  124 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~~~~~~l~~~~l~~----~~--------~~~~~-~~~~~  124 (497)
                      .++||+|||||++|+++|..|+++ |.   +|+|||+.+..... .....+.+..    ..        ..+.. ...+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~---~V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~  113 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYV  113 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCC---eEEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEE
Confidence            357999999999999999999997 87   89999998654211 0000000000    00        00000 00000


Q ss_pred             cc-cCCCCCCCCHhHHHH-cCcEEEeCCcEEEEecCCCEE---EEC---------CC-----cEEEeccEEeccCCCCC
Q 010917          125 TC-VGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTL---ITN---------SG-----KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       125 ~~-~~~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v---~~~---------~g-----~~i~~d~lvlAtG~~~~  184 (497)
                      .. ....+...+.+.+.+ .|++++.+++|+.+..+...+   .+.         ++     ..+.+|.||+|||..+.
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~  192 (284)
T 1rp0_A          114 VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  192 (284)
T ss_dssp             EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             EecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchH
Confidence            00 000000011222333 589999999999998665432   331         22     57899999999997654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.65  E-value=2.1e-07  Score=92.21  Aligned_cols=79  Identities=18%  Similarity=0.400  Sum_probs=57.6

Q ss_pred             CcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          240 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       240 ~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ..+.++.+....+.   +..+...+.+.+++.|++++.+++|++++..+++ + .+.+.+| ++.+|.||+|+|...+ .
T Consensus       135 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~~g-~~~a~~vV~A~G~~~~-~  207 (389)
T 2gf3_A          135 NYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS-K  207 (389)
T ss_dssp             TEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH-H
T ss_pred             CceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-E-EEEeCCC-EEEeCEEEEecCccHH-H
Confidence            45667766654432   3467778888899999999999999999865443 3 4666665 7999999999998654 4


Q ss_pred             chhhcC
Q 010917          320 PFERVG  325 (497)
Q Consensus       320 ~~~~~g  325 (497)
                      ++..++
T Consensus       208 l~~~~g  213 (389)
T 2gf3_A          208 LLSKLN  213 (389)
T ss_dssp             HGGGGT
T ss_pred             Hhhhhc
Confidence            444444

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.64  E-value=2.8e-08  Score=98.30  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...++||+|||||++|+++|+.|+++|+   +|+|||+..
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~---~V~llE~~~   50 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAKENK---NTALFESGT   50 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCC
Confidence            3445899999999999999999999998   899999975

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.64  E-value=1.3e-07  Score=91.37  Aligned_cols=100  Identities=18%  Similarity=0.239  Sum_probs=81.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc------------------cCHHHHHHHHHHHHHCCcEEEcC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------FTPSLAQRYEQLYQQNGVKFVKG  278 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------------------~~~~~~~~~~~~l~~~GV~i~~~  278 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+....                  ...++...+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            579999999999999999999999999999986433111                  13567778888888899999999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC---cCCC
Q 010917          279 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA---KPTV  318 (497)
Q Consensus       279 ~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~---~p~~  318 (497)
                      ++|.+++..+++. ..+.+.+|+ +.+|.||+|+|.   .|..
T Consensus        88 ~~v~~i~~~~~~~-~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADGV-FKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTSC-EEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             CEEEEEEECCCCc-EEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            9999998764423 357777776 999999999999   6654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.63  E-value=2e-07  Score=92.72  Aligned_cols=123  Identities=14%  Similarity=0.170  Sum_probs=71.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----CC--c--cccC-------------CCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LT--K--GYLF-------------PLDKKP  117 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~----l~--~--~~l~-------------~~~~~~  117 (497)
                      +.+||+|||||++|+++|..|++.|+   +|+|+|+.+........    +.  .  ..+.             +.....
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~  101 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGI---DVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNI  101 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC---EEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEE
Confidence            45799999999999999999999998   89999998653211000    00  0  0000             000000


Q ss_pred             CCCCCCcccc-------CCCCCC----CCHhHHHHc--CcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCC
Q 010917          118 ARLPGFHTCV-------GSGGER----QTPEWYKEK--GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT  182 (497)
Q Consensus       118 ~~~~~~~~~~-------~~~~~~----~~~~~~~~~--~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~  182 (497)
                      ....+.....       ......    .+.+.+.+.  +++++++++|+.++.+..  ++++.+|+++.+|.||.|+|..
T Consensus       102 ~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  181 (398)
T 2xdo_A          102 ADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGM  181 (398)
T ss_dssp             ECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTT
T ss_pred             ECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcc
Confidence            0000000000       000000    011222221  357888999999976543  6778888889999999999986


Q ss_pred             CC
Q 010917          183 AS  184 (497)
Q Consensus       183 ~~  184 (497)
                      ..
T Consensus       182 S~  183 (398)
T 2xdo_A          182 SK  183 (398)
T ss_dssp             CS
T ss_pred             hh
Confidence            53

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.61  E-value=1.9e-08  Score=99.51  Aligned_cols=46  Identities=30%  Similarity=0.338  Sum_probs=36.6

Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCE---EEECCCcEEEeccEEeccCCCC
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      +.+++.|++++.+++|+++..+...   +.+.+| ++.+|+||+|+|...
T Consensus       157 ~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          157 VKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            4456679999999999999866543   566666 799999999999764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.61  E-value=5.4e-08  Score=100.88  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..+++|+||||||+|+++|..|+++|+   +|+|||+.+..
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~---~v~viEr~~~~   40 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGV---RVLVVERRPGL   40 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSSSC
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            345799999999999999999999998   89999998643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.60  E-value=3.2e-08  Score=101.49  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=73.2

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C--------------CCCCccccCCCCCCC-CCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALTKGYLFPLDKKP-ARL  120 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~--------------~~l~~~~l~~~~~~~-~~~  120 (497)
                      ..++++|+||||||+|+++|..|+++|+   +|+|||+.+..... +              ..+...+... .... ..+
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~   83 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGV---EVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHF   83 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEE
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-cccccccc
Confidence            4556899999999999999999999998   89999998653211 0              0010000000 0000 000


Q ss_pred             CCCc-ccc--C-----------CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCc---EEEeccEEeccCC
Q 010917          121 PGFH-TCV--G-----------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGC  181 (497)
Q Consensus       121 ~~~~-~~~--~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~---~i~~d~lvlAtG~  181 (497)
                      .+.. ...  .           ......+.+.+.+.|++++.+++|++++.+..  ++++.++.   ++++|+||.|.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~  163 (500)
T 2qa1_A           84 GGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGG  163 (500)
T ss_dssp             TTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCT
T ss_pred             cceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCc
Confidence            0000 000  0           00000112234556999999999999976554  45555554   7999999999998


Q ss_pred             CC
Q 010917          182 TA  183 (497)
Q Consensus       182 ~~  183 (497)
                      ..
T Consensus       164 ~S  165 (500)
T 2qa1_A          164 RS  165 (500)
T ss_dssp             TC
T ss_pred             ch
Confidence            64

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.59  E-value=1.8e-08  Score=100.02  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=33.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ++||+||||||||+++|..|+++|+   +|+|+|+.+..
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~---~V~v~Er~~~~   39 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGL---KTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            4899999999999999999999998   89999997654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.59  E-value=5.8e-08  Score=98.49  Aligned_cols=98  Identities=17%  Similarity=0.292  Sum_probs=75.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||++|+.+|..|++.|.   +|+++++.+...   |..           ...+           ...+.+.+
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~---~V~lv~~~~~~l---~~~-----------~~~~-----------~~~l~~~l  218 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGA---EVIVLEYMDRIL---PTM-----------DLEV-----------SRAAERVF  218 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTS-----------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCCccc---ccc-----------CHHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999886521   000           0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++++++|.+++.+..  .+.+++++++.+|.||+|+|..|..
T Consensus       219 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          219 KKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence            888999999999999987654  3555678889999999999988763

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.59  E-value=4.7e-08  Score=100.73  Aligned_cols=123  Identities=18%  Similarity=0.283  Sum_probs=72.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCc----ccc-----------------------
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTK----GYL-----------------------  110 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~----~~l-----------------------  110 (497)
                      .++||+|||||++|+++|..|+++|+   +|+|||+.+...+... .+..    .++                       
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~---~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~   82 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGH---RVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFR   82 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCC---CEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEE
Confidence            34799999999999999999999988   8999999863221110 0000    000                       


Q ss_pred             CCCCCCC--CCCC-------CCccccC-CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCE---EE--ECCCc--EEEec
Q 010917          111 FPLDKKP--ARLP-------GFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LI--TNSGK--LLKYG  173 (497)
Q Consensus       111 ~~~~~~~--~~~~-------~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~--~~~g~--~i~~d  173 (497)
                      .......  ..+.       ....... ..+...+.+.+.+.|++++.+++|+.+..+...   +.  ..+|+  ++.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad  162 (512)
T 3e1t_A           83 WGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHAR  162 (512)
T ss_dssp             CSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEE
T ss_pred             ecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcC
Confidence            0000000  0000       0000000 000001223345579999999999999876653   33  34563  79999


Q ss_pred             cEEeccCCCCC
Q 010917          174 SLIVATGCTAS  184 (497)
Q Consensus       174 ~lvlAtG~~~~  184 (497)
                      .||.|+|....
T Consensus       163 ~VI~AdG~~S~  173 (512)
T 3e1t_A          163 FIVDASGNRTR  173 (512)
T ss_dssp             EEEECCCTTCS
T ss_pred             EEEECCCcchH
Confidence            99999998654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.59  E-value=8.1e-08  Score=96.38  Aligned_cols=56  Identities=13%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      ...+.+.+.+.+++.|+++++++.|++|+.. ++.+  | ..+|+++.+|.||+|+|...
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~v--V-~~~g~~~~ad~Vv~a~~~~~  243 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIE-EKKV--Y-TRDNEEYSFDVAISNVGVRE  243 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETT-TTEE--E-ETTCCEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE-CCEE--E-EeCCcEEEeCEEEECCCHHH
Confidence            3567888889999999999999999999854 4554  4 56788999999999999754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.58  E-value=7.1e-08  Score=100.75  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..+||||||||+||++||..|+++|+   +|+|+|+.+..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~---~V~vlEk~~~~  161 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGA---KVILIEKEPVI  161 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            35799999999999999999999998   89999998753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.57  E-value=3.7e-08  Score=98.38  Aligned_cols=125  Identities=13%  Similarity=0.056  Sum_probs=70.8

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCcc------------c
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKG------------Y  109 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~------------~  109 (497)
                      ..+++||+|||||++|+++|..|+++|+   +|+|+|+.+.......               .+...            +
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~---~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   96 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGI---DCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAY   96 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEE
Confidence            3456899999999999999999999998   8999999864311000               00000            0


Q ss_pred             cCCC-CCCCCCCCCCc--cccCCCCC----CCCHhHHHH--cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEec
Q 010917          110 LFPL-DKKPARLPGFH--TCVGSGGE----RQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA  178 (497)
Q Consensus       110 l~~~-~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlA  178 (497)
                      .... ......++...  ...+....    ..+...+.+  ..++++++++|+.++.+..  ++++.+|+++.+|.||.|
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~A  176 (407)
T 3rp8_A           97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAA  176 (407)
T ss_dssp             EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred             EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEEC
Confidence            0000 00000000000  00000000    001112211  1278899999999987654  567788989999999999


Q ss_pred             cCCCCC
Q 010917          179 TGCTAS  184 (497)
Q Consensus       179 tG~~~~  184 (497)
                      +|....
T Consensus       177 dG~~S~  182 (407)
T 3rp8_A          177 DGSHSA  182 (407)
T ss_dssp             CCTTCS
T ss_pred             CCcChH
Confidence            997643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.56  E-value=2.5e-07  Score=89.58  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=79.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC----cc----------------hhhccCHHHHHHHHHHHHHCCcE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~----~~----------------~~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+    .+                .......++...+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            35689999999999999999999999999999843    11                11012357788888999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEEEeccCcCCCc
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ++.++ +.+++.. ++.+ .+.+   .++.++.+|.+|+|+|..|...
T Consensus       101 i~~~~-v~~i~~~-~~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          101 IITET-VSKVDLS-SKPF-KLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             EECSC-EEEEECS-SSSE-EEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             EEEeE-EEEEEEc-CCEE-EEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            99998 9999864 3333 3455   4677899999999999987643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.56  E-value=1.1e-07  Score=94.15  Aligned_cols=102  Identities=24%  Similarity=0.401  Sum_probs=78.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-h-ccCH---------HHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R-LFTP---------SLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~-~~~~---------~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      +..+|+|||+|+.|+.+|..|...+.+|+++++.+.+.- + .++.         ++.....+.+++.||+++.+++|++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            345799999999999999999888899999998875321 1 1111         1112245667889999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  320 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~  320 (497)
                      ++..  .+  .|.+.+|+++.+|.+|+|+|.+|....
T Consensus        88 id~~--~~--~v~~~~g~~~~yd~lvlAtG~~p~~p~  120 (385)
T 3klj_A           88 IDPN--NK--LVTLKSGEKIKYEKLIIASGSIANKIK  120 (385)
T ss_dssp             EETT--TT--EEEETTSCEEECSEEEECCCEEECCCC
T ss_pred             EECC--CC--EEEECCCCEEECCEEEEecCCCcCCCC
Confidence            9854  22  577899999999999999999887543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.55  E-value=5.8e-08  Score=101.29  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..+||||||||+||++||..|+++|.   +|+|||+.+..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~---~V~vlEk~~~~  156 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPFS  156 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            45799999999999999999999998   89999998753

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.55  E-value=3.4e-07  Score=91.37  Aligned_cols=99  Identities=22%  Similarity=0.282  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------------  255 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~----------------------------------------  255 (497)
                      ..+|+|||+|..|+.+|..|++.|.+|+|+++.+.+....                                        
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            4589999999999999999999999999999876532110                                        


Q ss_pred             -----------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEec
Q 010917          256 -----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  312 (497)
Q Consensus       256 -----------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~  312 (497)
                                             ....+.+.+.+.+++.||+++++++|+++...++ . ..|.+.+| ++.+|.||+|+
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~-~-~~V~~~~g-~i~ad~VIlAt  183 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS-G-FRVTTSAG-TVDAASLVVAS  183 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-E-EEEEETTE-EEEESEEEECC
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-E-EEEEECCc-EEEeeEEEECC
Confidence                                   0124566777888889999999999999986533 3 35777777 89999999999


Q ss_pred             cCcCC
Q 010917          313 GAKPT  317 (497)
Q Consensus       313 G~~p~  317 (497)
                      |..+.
T Consensus       184 G~~S~  188 (417)
T 3v76_A          184 GGKSI  188 (417)
T ss_dssp             CCSSC
T ss_pred             CCccC
Confidence            98763

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.55  E-value=4e-08  Score=100.69  Aligned_cols=122  Identities=16%  Similarity=0.219  Sum_probs=72.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C--------------CCCCccccCCCCCCC-CCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALTKGYLFPLDKKP-ARLP  121 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~--------------~~l~~~~l~~~~~~~-~~~~  121 (497)
                      .++++|+||||||+|+++|..|+++|+   +|+|||+.+..... +              ..+...+... .... ..+.
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~~   85 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGV---DVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV-ETSTQGHFG   85 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC-CEESEEEET
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc-cccccceec
Confidence            456899999999999999999999998   89999998653211 0              0000000000 0000 0000


Q ss_pred             CC--c--cccCC----------CCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCc---EEEeccEEeccCCC
Q 010917          122 GF--H--TCVGS----------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCT  182 (497)
Q Consensus       122 ~~--~--~~~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~---~i~~d~lvlAtG~~  182 (497)
                      +.  .  .....          .....+.+.+.+.|++++.+++|++++.+..  ++++.++.   ++++|+||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  165 (499)
T 2qa2_A           86 GRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR  165 (499)
T ss_dssp             TEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred             ceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence            00  0  00000          0001112334556999999999999976543  56666664   79999999999986


Q ss_pred             C
Q 010917          183 A  183 (497)
Q Consensus       183 ~  183 (497)
                      .
T Consensus       166 S  166 (499)
T 2qa2_A          166 S  166 (499)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.54  E-value=1.9e-07  Score=97.54  Aligned_cols=37  Identities=38%  Similarity=0.553  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc------CCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~------g~~~~~V~lie~~~~~   98 (497)
                      +.+||+|||||+||+++|..|++.      |+   +|+|||+.+..
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~---~V~vlEk~~~~   76 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDL---RVCLVEKAAHI   76 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCC---CEEEECSSSST
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCC---cEEEEeCCCCC
Confidence            358999999999999999999998      87   89999998654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.54  E-value=6.6e-07  Score=87.66  Aligned_cols=99  Identities=15%  Similarity=0.196  Sum_probs=80.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------ccCHHHHHHHHHHHHHCCcEEEc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------~~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                  ....++...+.+.+++.|++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            458999999999999999999999999999987643110                  01256677788888888999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          278 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       278 ~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      +++|++++..+++. ..+.+.+|+++.+|.||+|+|..
T Consensus        94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCC
Confidence            99999998754433 35778888899999999999994

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.54  E-value=1.1e-07  Score=95.87  Aligned_cols=101  Identities=22%  Similarity=0.318  Sum_probs=78.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh---CCCcEEEEecCCcchhhc----------cCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~~~~~~~----------~~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      ++|+|||||+.|+.+|..|++   .|.+|+|+++.+.+....          ...++...+.+.+++.||+++. .++++
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999999   899999999987652111          1122333356777889999985 58999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchh
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  322 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~  322 (497)
                      ++.. +.   .|.+.+|+++.+|.+|+|+|.+|+...+.
T Consensus        84 id~~-~~---~V~~~~g~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           84 IDAE-AQ---NITLADGNTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             EETT-TT---EEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred             EEcC-CC---EEEECCCCEEECCEEEECCCCCcCcccCC
Confidence            9853 22   57788998999999999999998754443

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.53  E-value=2.1e-08  Score=101.71  Aligned_cols=122  Identities=17%  Similarity=0.251  Sum_probs=71.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCC---CCcccc--CC-CCCC---------------C
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ERPA---LTKGYL--FP-LDKK---------------P  117 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~~~---l~~~~l--~~-~~~~---------------~  117 (497)
                      ++||+||||||||+++|..|++.|+   +|+|+|+.+.... ....   +....+  .. ....               +
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~---~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~   82 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGL---KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSP   82 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSC---CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECC
Confidence            5799999999999999999999998   8999999864211 0000   000000  00 0000               0


Q ss_pred             -----CCCCCCccccC-CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCE---EEEC---CCc--EEEeccEEeccCCCC
Q 010917          118 -----ARLPGFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITN---SGK--LLKYGSLIVATGCTA  183 (497)
Q Consensus       118 -----~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~---~g~--~i~~d~lvlAtG~~~  183 (497)
                           ..+++...... ..+...+.+.+.+.|++++.+++|+++..++..   +++.   +|+  ++.+|.||.|+|...
T Consensus        83 ~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A           83 DMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             TSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             CCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence                 00000000000 000011122334579999999999998766554   3443   565  789999999999765


Q ss_pred             C
Q 010917          184 S  184 (497)
Q Consensus       184 ~  184 (497)
                      .
T Consensus       163 ~  163 (453)
T 3atr_A          163 S  163 (453)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.53  E-value=9.8e-08  Score=94.21  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                      ..+...+.+.+++.|+++++++.|++++..++ . ..|.+.+| ++.+|.||+|+|.... .++..++
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g  217 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWCD-AIAGLAG  217 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhHH-HHHHHhC
Confidence            46777788888999999999999999986533 3 46777777 7999999999997543 3444433

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.52  E-value=6.6e-07  Score=88.35  Aligned_cols=97  Identities=21%  Similarity=0.244  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  254 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987654210                                         


Q ss_pred             --cc-----------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          255 --LF-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 --~~-----------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                        .+           ...+.+.+.+.+++.|++++.+++|++++.  ++   .+++.+|+++.+|.||.|.|..+.
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHH
Confidence              00           034567777888889999999999999985  34   567888989999999999998764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.52  E-value=5.9e-07  Score=86.96  Aligned_cols=97  Identities=18%  Similarity=0.229  Sum_probs=78.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------ccCHHHHHHHHHHHHHCCcEEEcC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVKG  278 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------~~~~~~~~~~~~~l~~~GV~i~~~  278 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                  ....++...+.+.+++.+++++.+
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG   85 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence            57999999999999999999999999999987644211                  012456677777788889999999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          279 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       279 ~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      ++|.+++..++  ...+.+.+|+++.+|.||+|+|..
T Consensus        86 ~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           86 ERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             CCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred             CEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence            99999986533  235777888889999999999984

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.52  E-value=5.2e-07  Score=86.65  Aligned_cols=100  Identities=20%  Similarity=0.297  Sum_probs=79.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Ccch--------hh---ccCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL--------QR---LFTPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~~--------~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.  ..+.        +.   ....++...+.+.+++.|++++. .++.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            58999999999999999999999999999985  1111        11   12356777888888899999999 88999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ++..++ . ..+.+.+|+++.+|.+|+|+|..|...
T Consensus        95 i~~~~~-~-~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENRGD-E-FVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEecCC-E-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence            986532 2 357788888999999999999987654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.51  E-value=5.8e-07  Score=92.85  Aligned_cols=102  Identities=17%  Similarity=0.193  Sum_probs=82.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHH-hCCCcEEEEecCCcchhh------------------------------------ccCHH
Q 010917          217 KKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQR------------------------------------LFTPS  259 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~-~~g~~Vtlv~~~~~~~~~------------------------------------~~~~~  259 (497)
                      .+|+|||+|+.|+.+|..|+ +.|.+|+|+++.+.+...                                    ...++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 999999999986533110                                    01235


Q ss_pred             HHHHHHHHHHHCCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC--cCCC
Q 010917          260 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV  318 (497)
Q Consensus       260 ~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~--~p~~  318 (497)
                      +..++.+..++.|+  +++++++|++++..+++....|.+.+|+++.+|.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence            67778888888898  89999999999876554455788899999999999999994  5543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.51  E-value=4.9e-07  Score=93.58  Aligned_cols=103  Identities=16%  Similarity=0.199  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------ccCHH
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFTPS  259 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------~~~~~  259 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+...                                    .-.++
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            357999999999999999999999999999986533210                                    01246


Q ss_pred             HHHHHHHHHHHCCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc--CcCCC
Q 010917          260 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV  318 (497)
Q Consensus       260 ~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G--~~p~~  318 (497)
                      +..++.+..++.|+  +++++++|++++..++.....|.+.+|+++.+|.||+|+|  .+|..
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            77788888889998  8999999999987655545578889999999999999999  55553

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.50  E-value=2.2e-07  Score=92.76  Aligned_cols=96  Identities=20%  Similarity=0.343  Sum_probs=75.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...      .. .+      ...+           ...+.+.+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l------~~-~~------~~~~-----------~~~l~~~l  197 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLM------SR-AA------PATL-----------ADFVARYH  197 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS------TT-TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---EEEEEEeCCccc------cc-cc------CHHH-----------HHHHHHHH
Confidence            5899999999999999999999987   899999886421      00 00      0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.||+++++++|.+++ ++ .+.+++|+++.+|.||+|+|..|.
T Consensus       198 ~~~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          198 AAQGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             HHTTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHcCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCcc
Confidence            88999999999999998 44 888899989999999999998765

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.50  E-value=6.4e-07  Score=85.67  Aligned_cols=101  Identities=20%  Similarity=0.268  Sum_probs=78.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC--cch---------h--hccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---------Q--RLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~--~~~---------~--~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +|+|||+|+.|+.+|..|++.|.+|+++++..  .+.         .  ....+.+...+.+.+++.|++++.++++..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            68999999999999999999999999997531  111         0  0112467778888888999999999999999


Q ss_pred             EeCCC-CcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          285 EAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       285 ~~~~~-~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                      +...+ +....+.+.+|+++.+|.+|+|+|..|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22345778888889999999999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.49  E-value=5.7e-07  Score=85.30  Aligned_cols=100  Identities=12%  Similarity=0.255  Sum_probs=77.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch---------hh---ccCHHHHHHHHHHHHHC-CcEEEcCCeEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------QR---LFTPSLAQRYEQLYQQN-GVKFVKGASIKN  283 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------~~---~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~  283 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+...         +.   ....++...+.+.+++. +++++.+ ++++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            479999999999999999999999999999753211         00   11235667777777776 7888765 8999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ++..+++  ..+.+.+|+++.+|.||+|+|..|...
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            9865333  357888999999999999999987643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.49  E-value=1.6e-07  Score=93.38  Aligned_cols=122  Identities=14%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC-CCc-------------ccc-----------C
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA-LTK-------------GYL-----------F  111 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~---~~~~~~-l~~-------------~~l-----------~  111 (497)
                      ++||+|||||++|+++|..|++.|+   +|+|+|+.+..   .-.+.. +..             .+.           .
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence            3799999999999999999999998   89999997631   000000 000             000           0


Q ss_pred             CCCC-CCCCCC----CCcc-c-cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC---CEEEE-CCCc--EEEeccEEec
Q 010917          112 PLDK-KPARLP----GFHT-C-VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK---QTLIT-NSGK--LLKYGSLIVA  178 (497)
Q Consensus       112 ~~~~-~~~~~~----~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~---~~v~~-~~g~--~i~~d~lvlA  178 (497)
                      .... ....+.    +... . ........+.+.+.+.|++++.+++|+++..+.   ..+++ ++|+  ++.+|.||.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (394)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence            0000 000000    0000 0 000000112233445699999999999997642   46776 6776  7999999999


Q ss_pred             cCCCCC
Q 010917          179 TGCTAS  184 (497)
Q Consensus       179 tG~~~~  184 (497)
                      +|....
T Consensus       159 dG~~S~  164 (394)
T 1k0i_A          159 DGFHGI  164 (394)
T ss_dssp             CCTTCS
T ss_pred             CCCCcH
Confidence            998654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.49  E-value=2.1e-07  Score=91.53  Aligned_cols=35  Identities=14%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ++||+|||||++|+++|++|+++|+   +|+|+|+...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~---~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL---NVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC---CEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCC
Confidence            4699999999999999999999998   8999999754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.46  E-value=2.7e-07  Score=91.32  Aligned_cols=98  Identities=13%  Similarity=0.174  Sum_probs=75.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...-.       .+      ...+           ...+.+.+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~~-------~~------~~~~-----------~~~l~~~l  197 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGY---QLDVVAPCEQVMPG-------LL------HPAA-----------AKAVQAGL  197 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT-------TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCcchhhc-------cc------CHHH-----------HHHHHHHH
Confidence            5899999999999999999999987   89999987642100       00      0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.|++++++++|.+++.+..  .+.+.+|+++.+|.||+|+|..|.
T Consensus       198 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          198 EGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             HTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence            788999999999999976543  577788888999999999998775

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.45  E-value=1.3e-06  Score=86.80  Aligned_cols=99  Identities=11%  Similarity=0.204  Sum_probs=77.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------------------hc---------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------RL---------------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------------------~~---------------------  255 (497)
                      .+|+|||+|..|+.+|..|++.|.+|+++++.+.+..                    ..                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            4699999999999999999999999999998764310                    00                     


Q ss_pred             ----------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC---CCcEEEEEeCCCcEEEcCEEEE
Q 010917          256 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       256 ----------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~---~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                                            ....+.+.+.+.+++.||++++++.++++..++   ++.+ .+.+.++ ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRF-VLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCE-EEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeE-EEEECCC-EEECCEEEE
Confidence                                  123455667788888999999999999998541   2333 5677766 799999999


Q ss_pred             eccCcCC
Q 010917          311 GIGAKPT  317 (497)
Q Consensus       311 a~G~~p~  317 (497)
                      |+|..+.
T Consensus       163 AtG~~s~  169 (401)
T 2gqf_A          163 ATGGLSM  169 (401)
T ss_dssp             CCCCSSC
T ss_pred             CCCCccC
Confidence            9999874

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.45  E-value=2.5e-07  Score=93.00  Aligned_cols=96  Identities=24%  Similarity=0.353  Sum_probs=72.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcchhhccCHH----------HHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPS----------LAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~~~~~~----------~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      |+|+|||+|+.|+.+|..|++++  .+||||++.+.+.-...-+.          +...+.+.+++.||+++.+ ++++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            68999999999999999999876  68999999876432111111          1112344567789999877 69999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      +..  ++  .|++++|+++++|.+|+|+|.++.
T Consensus        82 d~~--~~--~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DPD--AN--TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ETT--TT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred             ECC--CC--EEEECCCCEEECCEEEEeCCCCcc
Confidence            853  22  578899999999999999998753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.45  E-value=2.8e-07  Score=93.30  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=76.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+.           ..+           ...+.+.+
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l  218 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFD-----------PMI-----------SETLVEVM  218 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC---EEEEEEeCCchh---hhhh-----------HHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999876421   0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++++++|.+++.+.   ..+.+++|+++.+|.||+|+|..|..
T Consensus       219 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          219 NAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             HHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            88899999999999998653   36788888889999999999988763

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.44  E-value=2.8e-07  Score=93.60  Aligned_cols=98  Identities=21%  Similarity=0.277  Sum_probs=76.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.+
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l  217 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGS---EVTVVALEDRLL---FQFD-----------PLL-----------SATLAENM  217 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC---EEEEEEcCCccc---cccC-----------HHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999875421   0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCC--CEEEECCCc-EEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK--QTLITNSGK-LLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~-~i~~d~lvlAtG~~~~~  185 (497)
                      ++.|++++++++|.+++.+.  ..+.+++|+ ++.+|.||+|+|..|..
T Consensus       218 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          218 HAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             HHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence            88999999999999998643  467788888 89999999999988763

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.44  E-value=3.8e-07  Score=91.53  Aligned_cols=57  Identities=19%  Similarity=0.370  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      ..+.+.+.+.++++|+++++++.|++|... ++++..|.++ |+++.+|.||+|+|...
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~-g~~~~ad~VV~a~~~~~  252 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIAD-DRIHDADLVISNLGHAA  252 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET-TEEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEEC-CEEEECCEEEECCCHHH
Confidence            457788889999999999999999999865 5666667765 77899999999998643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.43  E-value=5.1e-07  Score=90.89  Aligned_cols=95  Identities=16%  Similarity=0.283  Sum_probs=76.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..+++.|.   +|||+++.+...           ....   .++           .....+.+
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~ll-----------~~~d---~~~-----------~~~~~~~l  198 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGL---HPTLIHRSDKIN-----------KLMD---ADM-----------NQPILDEL  198 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSCCS-----------TTSC---GGG-----------GHHHHHHH
T ss_pred             CcEEEEECCccchhhhHHHHHhcCC---cceeeeeecccc-----------cccc---chh-----------HHHHHHHh
Confidence            4689999999999999999999987   899999876431           0000   001           13456778


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.||+++++++|..++.  ..+.+++|+.+++|.+++|+|..|.
T Consensus       199 ~~~gV~i~~~~~v~~~~~--~~v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          199 DKREIPYRLNEEINAING--NEITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             HHTTCCEEESCCEEEEET--TEEEETTSCEEECSEEEECCCEEES
T ss_pred             hccceEEEeccEEEEecC--CeeeecCCeEEeeeeEEEEeceecC
Confidence            889999999999998874  5788999999999999999998875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.43  E-value=3.1e-07  Score=90.27  Aligned_cols=92  Identities=22%  Similarity=0.332  Sum_probs=73.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  140 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (497)
                      ++++|||||+.|+.+|..|++.|.   +|+++++.+...   + +.           ..+           ...+.+.++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~-~~-----------~~~-----------~~~l~~~l~  194 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGY---HVKLIHRGAMFL---G-LD-----------EEL-----------SNMIKDMLE  194 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTC---EEEEECSSSCCT---T-CC-----------HHH-----------HHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCCeec---c-CC-----------HHH-----------HHHHHHHHH
Confidence            799999999999999999999987   899999876421   0 00           000           123456778


Q ss_pred             HcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          141 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       141 ~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +.||++++++++.+++  ...+.+++|+ +.+|.||+|+|..|.
T Consensus       195 ~~gV~i~~~~~v~~i~--~~~v~~~~g~-i~~D~vi~a~G~~p~  235 (367)
T 1xhc_A          195 ETGVKFFLNSELLEAN--EEGVLTNSGF-IEGKVKICAIGIVPN  235 (367)
T ss_dssp             HTTEEEECSCCEEEEC--SSEEEETTEE-EECSCEEEECCEEEC
T ss_pred             HCCCEEEcCCEEEEEE--eeEEEECCCE-EEcCEEEECcCCCcC
Confidence            8999999999999988  3468888888 999999999998765

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.43  E-value=8.6e-07  Score=92.39  Aligned_cols=141  Identities=15%  Similarity=0.169  Sum_probs=92.8

Q ss_pred             eccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc----cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE----KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       177 lAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~----~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      .++.+.......+|....++........+...+...+.    ..-.|+|||+|..|+.+|..|++.|.+|+|+++.+.+.
T Consensus        78 ~c~~ch~~~~~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~g  157 (566)
T 1qo8_A           78 YCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG  157 (566)
T ss_dssp             GGGGTCCCCCCCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             hhhhhcCCCcCCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            35555544312234444444444443233333322222    23479999999999999999999999999999875321


Q ss_pred             hh------------------------------------------------------------------------------
Q 010917          253 QR------------------------------------------------------------------------------  254 (497)
Q Consensus       253 ~~------------------------------------------------------------------------------  254 (497)
                      ..                                                                              
T Consensus       158 g~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~  237 (566)
T 1qo8_A          158 GNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVD  237 (566)
T ss_dssp             TTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSC
T ss_pred             CcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCC
Confidence            10                                                                              


Q ss_pred             ---------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeccCcCC
Q 010917          255 ---------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 ---------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vv~a~G~~p~  317 (497)
                               .....+...+.+.+++.||++++++.++++...+++++.+|.+.  +|+  ++.+|.||+|+|....
T Consensus       238 r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          238 RTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             CEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             ceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence                     00123445566777889999999999999986533777666664  675  6899999999997553

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.43  E-value=2e-07  Score=94.53  Aligned_cols=97  Identities=22%  Similarity=0.306  Sum_probs=73.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||++|+.+|..|++.|.   +|+|+++.+...   +.+           ...+           ...+.+.
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~-----------~~~~-----------~~~l~~~  221 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTY-----------DSEL-----------TAPVAES  221 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTS-----------CHHH-----------HHHHHHH
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEEcCCccc---ccc-----------CHHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999986531   000           0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEEC--CC--cEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~--~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||+++++++|.+++. +. +.+.  +|  .++.+|.||+|+|..|..
T Consensus       222 l~~~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          222 LKKLGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             HHHHTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             HHHCCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCC
Confidence            7888999999999999987 43 4333  55  579999999999988763

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.42  E-value=1.1e-06  Score=84.06  Aligned_cols=99  Identities=16%  Similarity=0.312  Sum_probs=76.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc---c--------hhh----ccCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      +|+|||+|+.|+.+|..|++.|. +|+++++...   +        .+.    ....++...+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            69999999999999999999999 9999997521   0        111    11246677778888889999998 788


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      .+++..+ +. ..+.+.+|+++.+|.||+|+|..|...
T Consensus        82 ~~i~~~~-~~-~~v~~~~g~~~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           82 QRVSKKD-SH-FVILAEDGKTFEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             EEEEEET-TE-EEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEEcC-CE-EEEEEcCCCEEECCEEEECCCCCCCCC
Confidence            8887643 32 246678888999999999999887643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.42  E-value=3.4e-07  Score=91.17  Aligned_cols=101  Identities=22%  Similarity=0.283  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcchhhccCHHHH---------HHHHHHHHHCCcEEEcCCeEEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~~~~~~~~---------~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +|+|+|||+|+.|+.+|..|++.+  .+|+||++.+..........+.         ..-.+.+.+.||+++.+ ++++|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            799999999999999999998766  5899999887532211111110         01123456789999876 68899


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                      +..  .+  .+.+.+|+++.+|.+|+|+|.+++....
T Consensus        81 d~~--~~--~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           81 DPD--KK--LVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             ETT--TT--EEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             Ecc--Cc--EEEecccceeecceeeeccCCccccCCc
Confidence            853  22  4778999999999999999998875433

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.42  E-value=3e-07  Score=93.49  Aligned_cols=98  Identities=12%  Similarity=0.216  Sum_probs=74.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +..           ...+           ...+.+.+
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~-----------~~~~-----------~~~l~~~l  220 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGA---EVTLIEYMPEIL---PQG-----------DPET-----------AALLRRAL  220 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTS-----------CHHH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEEcCCccc---ccc-----------CHHH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999876421   000           0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEEC-C--Cc--EEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITN-S--GK--LLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~-~--g~--~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++++++|.+++.+..  .+.+. +  |+  ++.+|.||+|+|..|..
T Consensus       221 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          221 EKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             HHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred             HhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence            888999999999999986553  35554 5  66  79999999999988763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.42  E-value=1.2e-06  Score=84.46  Aligned_cols=101  Identities=22%  Similarity=0.256  Sum_probs=77.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---c--------hhhc----cCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQRL----FTPSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------~~~~----~~~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++...   +        .+..    ...++...+.+.+++.|++++. .++
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            5799999999999999999999999999998721   0        0110    1246677778888899999998 578


Q ss_pred             EEEEeC--CCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          282 KNLEAG--SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       282 ~~i~~~--~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      .+++..  ++. ...+.+.+|+++.+|.||+|+|..|...
T Consensus        88 ~~i~~~~~~~~-~~~v~~~~g~~~~~~~vv~AtG~~~~~~  126 (325)
T 2q7v_A           88 QGVQHDATSHP-YPFTVRGYNGEYRAKAVILATGADPRKL  126 (325)
T ss_dssp             EEEEECTTSSS-CCEEEEESSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEeccCCCc-eEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence            888764  222 1245667888999999999999987643

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.41  E-value=1.7e-06  Score=87.32  Aligned_cols=99  Identities=25%  Similarity=0.437  Sum_probs=79.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  254 (497)
                      .+|+|||+|..|+.+|..|++.|.+|+|+++.+.+...                                          
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            47999999999999999999999999999987532100                                          


Q ss_pred             -------------------cc-----CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          255 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       255 -------------------~~-----~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                                         .+     ...+.+.+.+.+++.||+++++++|+++... ++.+..|.+.+|+++.+|.||+
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEE
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEE
Confidence                               00     1234456677778899999999999999864 5666678888888899999999


Q ss_pred             eccCcC
Q 010917          311 GIGAKP  316 (497)
Q Consensus       311 a~G~~p  316 (497)
                      |+|..+
T Consensus       186 AtGg~s  191 (447)
T 2i0z_A          186 AVGGKS  191 (447)
T ss_dssp             CCCCSS
T ss_pred             CCCCCc
Confidence            999876

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.41  E-value=2e-06  Score=84.42  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=75.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcchh---------------------h--------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ---------------------R--------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~---------------------~--------------------  254 (497)
                      .+|+|||+|+.|+.+|..|++.|. +|+++++.+ +..                     .                    
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   83 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEE   83 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccccc
Confidence            479999999999999999999999 999999875 100                     0                    


Q ss_pred             -ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          255 -LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 -~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                       .....+..++.+.+++.|++++.++.|.+++..+++.  .|.+.++ ++.+|.||+|+|..+.
T Consensus        84 ~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~--~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           84 HISGETYAEYLQVVANHYELNIFENTVVTNISADDAYY--TIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSE--EEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeE--EEEeCCC-EEEeCEEEECCCCCCc
Confidence             0013455667777788999999999999998653332  4666666 5999999999999754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.40  E-value=7.8e-07  Score=91.97  Aligned_cols=102  Identities=13%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------------------------h-----------ccCHHH
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------R-----------LFTPSL  260 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------~-----------~~~~~~  260 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..                         .           .-.+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            4799999999999999999999999999998754310                         0           012567


Q ss_pred             HHHHHHHHHHCCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc--CcCCC
Q 010917          261 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV  318 (497)
Q Consensus       261 ~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G--~~p~~  318 (497)
                      ..++.+..++.|+  .+.++++|++++.++++....|.+.+|+++.+|.||+|+|  .+|+.
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            7778888888887  7889999999986554444568889999999999999999  55553

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.40  E-value=1.6e-06  Score=88.08  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh---CCCc---EEEEecCCcchhhc-----------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVG---WKLD---TTIIFPENHLLQRL-----------------------------------  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~---~g~~---Vtlv~~~~~~~~~~-----------------------------------  255 (497)
                      ++|+|||+|+.|+.+|..|++   .|.+   |+++++.+.+....                                   
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            589999999999999999999   9999   99999875431100                                   


Q ss_pred             ----------------cCHHHHHHHHHHHHHCCcE--EEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEec
Q 010917          256 ----------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGI  312 (497)
Q Consensus       256 ----------------~~~~~~~~~~~~l~~~GV~--i~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vv~a~  312 (497)
                                      -...+.+++.+.+++.|++  ++++++|++++..+++....|++.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence                            0134566777777888998  8999999999865442122444443   4  578999999999


Q ss_pred             c--CcCCCc
Q 010917          313 G--AKPTVS  319 (497)
Q Consensus       313 G--~~p~~~  319 (497)
                      |  ..|+..
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677644

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.40  E-value=7.1e-07  Score=89.32  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=76.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...-.       .+      ...+           ...+.+.+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtvv~~~~~~l~~-------~~------~~~~-----------~~~l~~~l  204 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGV---NVTLLEALPRVLAR-------VA------GEAL-----------SEFYQAEH  204 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCchhhh-------hc------CHHH-----------HHHHHHHH
Confidence            5799999999999999999999987   89999987653100       00      0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.|+++++++.|..+..++.   .+.+++|+++.+|.||+|+|..|.
T Consensus       205 ~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          205 RAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             HHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             HhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence            888999999999999987543   578889999999999999998876

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.40  E-value=3.3e-07  Score=91.33  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      -||+||||||+||++|..|+++|+   +|+|+|+.+..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~---~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGI---KVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---CEEEEecCCCC
Confidence            389999999999999999999998   89999997654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.40  E-value=8.8e-08  Score=98.68  Aligned_cols=41  Identities=15%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG  180 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG  180 (497)
                      .+.|++++++++|++|+.+++.+++.+|+++.||+||.++-
T Consensus       233 ~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P  273 (513)
T 4gde_A          233 PKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMA  273 (513)
T ss_dssp             CGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSC
T ss_pred             HhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCC
Confidence            34588999999999999999999999999999999998754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.40  E-value=4.2e-07  Score=91.91  Aligned_cols=98  Identities=17%  Similarity=0.251  Sum_probs=73.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||++|+.+|..|++.|.   +|+++++.+...-      . .+      ...+           ...+.+.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~------~-~~------~~~~-----------~~~l~~~  200 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPLG------V-YL------DKEF-----------TDVLTEE  200 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTT------T-TC------CHHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCccccc------c-cC------CHHH-----------HHHHHHH
Confidence            45899999999999999999999987   8999999764210      0 00      0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.|++++++++|.+++.+++  .+.+ ++.++.+|.||+|+|..|.
T Consensus       201 l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          201 MEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             HHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence            7788999999999999987643  3555 4567999999999998876

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.39  E-value=1.1e-06  Score=84.85  Aligned_cols=99  Identities=16%  Similarity=0.233  Sum_probs=76.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEec----CCcch------------hh----ccCHHHHHHHHHHHHHCCcEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----ENHLL------------QR----LFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~----~~~~~------------~~----~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++    ...+.            +.    ....++...+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            5799999999999999999999999999997    21110            00    1124677778888889999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       277 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      .++ +..++..++ .+ .+.+ +++++.+|.||+|+|..|...
T Consensus        89 ~~~-v~~i~~~~~-~~-~v~~-~~~~~~~~~vv~A~G~~~~~~  127 (333)
T 1vdc_A           89 TET-VTKVDFSSK-PF-KLFT-DSKAILADAVILAIGAVAKRL  127 (333)
T ss_dssp             CCC-CCEEECSSS-SE-EEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred             EeE-EEEEEEcCC-EE-EEEE-CCcEEEcCEEEECCCCCcCCC
Confidence            987 888885433 22 3555 778899999999999987643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.39  E-value=2.6e-06  Score=84.22  Aligned_cols=97  Identities=21%  Similarity=0.297  Sum_probs=71.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...                                           
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            4999999999999999999999999999986432100                                           


Q ss_pred             ------------ccC-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-CCC--cEEEcCEEEEeccCc
Q 010917          255 ------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDG--STIDADTIVIGIGAK  315 (497)
Q Consensus       255 ------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~-~~g--~~i~~D~vv~a~G~~  315 (497)
                                  .++ ..+...+.+...+.|++++.+++++.+... ++.+..+.. .++  .++.+|.||-|.|..
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~  161 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFE  161 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCccc
Confidence                        001 234456677778899999999999998754 455444433 233  368899999999854

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.38  E-value=6.7e-07  Score=91.75  Aligned_cols=98  Identities=14%  Similarity=0.192  Sum_probs=76.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.+
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~~l  227 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL---RKFD-----------ESV-----------INVLENDM  227 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC---TTSC-----------HHH-----------HHHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCC---eEEEEecCCccC---cccc-----------hhh-----------HHHHHHHH
Confidence            5799999999999999999999987   899999876421   0000           000           12345677


Q ss_pred             HHcCcEEEeCCcEEEEecCC---CEEEECCCcE-EEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKL-LKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~-i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++++++|.+++.+.   ..+.+++|++ +.+|.||+|+|..|..
T Consensus       228 ~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          228 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             HhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence            88999999999999998643   3678888887 9999999999998764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.38  E-value=2e-07  Score=93.18  Aligned_cols=98  Identities=21%  Similarity=0.337  Sum_probs=74.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh---CCCcEEEEecCCcchhhc----------cCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~~~~~~~----------~~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      ++|+|||+|+.|+.+|..|++   .|.+|+|+++.+.+....          ...++...+.+.+++.|++++.+ ++++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   899999999887543210          11223334566777889999988 8999


Q ss_pred             EEeCCCCcEEEEEeCCCc----EEEcCEEEEeccCcCCCc
Q 010917          284 LEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~----~i~~D~vv~a~G~~p~~~  319 (497)
                      ++.. +.   .|.+.+++    ++.+|.||+|+|.+|+..
T Consensus        81 i~~~-~~---~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAK-SS---MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETT-TT---EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCC-CC---EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            9853 22   34555554    499999999999988754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.38  E-value=1.8e-06  Score=82.35  Aligned_cols=100  Identities=10%  Similarity=0.162  Sum_probs=70.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----------chh--hccCHHHHHHHHHHHHHCC-cEEEcCCeEEEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LLQ--RLFTPSLAQRYEQLYQQNG-VKFVKGASIKNL  284 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~----------~~~--~~~~~~~~~~~~~~l~~~G-V~i~~~~~v~~i  284 (497)
                      .|+|||+|+.|+.+|..+++.|.+|+++++...          +..  ....+++.+...+.+.+.+ +.++.. .+..+
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   86 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEK-TVVMI   86 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEEC-CEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEee-EEEEe
Confidence            599999999999999999999999999987531          100  0112345555555555554 555544 45566


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ...+++. ..+.+.+|+++.+|.||+|||.+|...
T Consensus        87 ~~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~p  120 (304)
T 4fk1_A           87 TKQSTGL-FEIVTKDHTKYLAERVLLATGMQEEFP  120 (304)
T ss_dssp             EECTTSC-EEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred             eecCCCc-EEEEECCCCEEEeCEEEEccCCccccc
Confidence            5444443 357889999999999999999987643

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.37  E-value=1.1e-06  Score=87.26  Aligned_cols=35  Identities=26%  Similarity=0.522  Sum_probs=32.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+||+|||||++|+++|+.|+++|+   +|+|+|+.+.
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~---~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGH---RVLVLERHTF   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence            3699999999999999999999998   8999999764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.37  E-value=5.8e-07  Score=91.68  Aligned_cols=99  Identities=15%  Similarity=0.217  Sum_probs=76.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~~  235 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGS---ETHLVIRGETVL---RKFD-----------ECI-----------QNTITDH  235 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEeCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   0000           000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCC----CEEEECCC-cEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEK----QTLITNSG-KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~----~~v~~~~g-~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||+++++++|.+++.+.    ..+.+++| +++.+|.||+|+|..|..
T Consensus       236 l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          236 YVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             HHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             HHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            788899999999999997642    36788888 789999999999988764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.37  E-value=2.8e-07  Score=86.23  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=33.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      +.||+|||||||||+||..|+++|+   +|+|+|+++..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~---~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGH---QVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCC
Confidence            4799999999999999999999998   89999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.37  E-value=7.5e-07  Score=88.79  Aligned_cols=99  Identities=24%  Similarity=0.435  Sum_probs=75.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchh-------hcc-----CHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ-------RLF-----TPSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-------~~~-----~~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      .++|+|||+|+.|+.+|..|++.|.  +|+++++.+.+..       ..+     ...+.....+.+++.+|+++. .++
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v   79 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRM   79 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCE
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEE
Confidence            3689999999999999999999998  8999998763211       000     111122345667889999999 899


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ++++..  ++  .+.+.+|+++.+|.+|+|+|.+|...
T Consensus        80 ~~id~~--~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  113 (404)
T 3fg2_P           80 VSIDRE--GR--KLLLASGTAIEYGHLVLATGARNRML  113 (404)
T ss_dssp             EEEETT--TT--EEEESSSCEEECSEEEECCCEEECCC
T ss_pred             EEEECC--CC--EEEECCCCEEECCEEEEeeCCCccCC
Confidence            999853  22  47788999999999999999987643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.36  E-value=3.7e-07  Score=92.57  Aligned_cols=99  Identities=14%  Similarity=0.274  Sum_probs=73.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+           ...+           ...+.+.
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~-----------~~~~-----------~~~l~~~  220 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGF-----------EKQM-----------AAIIKKR  220 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTS-----------CHHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---ccc-----------CHHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   000           0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEEC---CCcEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~---~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||+++++++|.+++.+..  .+.+.   +++++.+|.||+|+|..|..
T Consensus       221 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          221 LKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             HHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence            7888999999999999986553  34443   45679999999999988763

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.35  E-value=7.2e-07  Score=91.75  Aligned_cols=37  Identities=16%  Similarity=0.149  Sum_probs=33.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..+||||||||+|||+||..|+++|.   +|+||||.+..
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~---~V~vlEk~~~~   76 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGA---DVLVLERTSGW   76 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            35799999999999999999999997   89999998753

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.35  E-value=2.2e-06  Score=85.13  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  253 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------------------  253 (497)
                      .+|+|||+|..|+.+|..|++.|.+|+|+++.+.+..                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999998654300                                           


Q ss_pred             --h--------------ccCHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEE-EEEeCCCcEEEcCEEEEeccCc
Q 010917          254 --R--------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       254 --~--------------~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~-~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                        .              .....+.+.+.+.+++. |++++.+++|++++.+++ .+. .+++.+|+++.+|.||.|.|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER-HAIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC-ceEEEEEECCCCEEECCEEEECCCCC
Confidence              0              00124556667777777 999999999999987544 342 5778899899999999999987


Q ss_pred             CC
Q 010917          316 PT  317 (497)
Q Consensus       316 p~  317 (497)
                      ..
T Consensus       166 s~  167 (399)
T 2x3n_A          166 SY  167 (399)
T ss_dssp             CH
T ss_pred             hH
Confidence            64

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.35  E-value=1.6e-06  Score=86.53  Aligned_cols=99  Identities=24%  Similarity=0.427  Sum_probs=75.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCc--EEEEecCCcchhh--ccCHHHH---------HHHHHHHHHCCcEEEcCCeEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHLLQR--LFTPSLA---------QRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~--Vtlv~~~~~~~~~--~~~~~~~---------~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      ++|+|||+|+.|+.+|..|++.|.+  |+++++.+.+...  .+...+.         ....+.+++.||+++.+++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            5899999999999999999999987  9999987653210  0111111         1123456788999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ++..  .+  .+.+.+|+++.+|.+|+|+|.+|...
T Consensus        83 id~~--~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           83 LDVQ--TR--TISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EETT--TT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EECC--CC--EEEECCCCEEECCEEEEccCCcccCC
Confidence            9853  22  57788999999999999999987654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.34  E-value=1.3e-06  Score=87.85  Aligned_cols=102  Identities=24%  Similarity=0.431  Sum_probs=76.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchh------h-ccC-----HHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ------R-LFT-----PSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~------~-~~~-----~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      ..+|+|||+|+.|+.+|..|++.|.  +|+++++.+.+..      . .+.     ..+.....+.+++.||+++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999998  7999998754210      0 000     011111235677899999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                      ..++.. + .  .|.+.+|+++.+|.+|+|+|.+|....+
T Consensus        84 ~~i~~~-~-~--~v~~~~g~~~~~d~lviAtG~~p~~~~i  119 (431)
T 1q1r_A           84 TAINRD-R-Q--QVILSDGRALDYDRLVLATGGRPRPLPV  119 (431)
T ss_dssp             EEEETT-T-T--EEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred             EEEECC-C-C--EEEECCCCEEECCEEEEcCCCCccCCCC
Confidence            999853 2 2  4677888899999999999999875443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.34  E-value=7.1e-07  Score=93.56  Aligned_cols=97  Identities=20%  Similarity=0.376  Sum_probs=77.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.+
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l  238 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGI---EVTLVEMANQVM---PPID-----------YEM-----------AAYVHEHM  238 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSC-----------HHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCccc---ccCC-----------HHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999876421   0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.|++++++++|..++.+...+.+.+|+++.+|.||+|+|..|.
T Consensus       239 ~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          239 KNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             HHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence            889999999999999988767899999999999999999998765

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.33  E-value=8e-07  Score=91.00  Aligned_cols=98  Identities=17%  Similarity=0.298  Sum_probs=76.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      .++++|||||+.|+.+|..|++.   |.   +|+++++.+...   +.+.           ..+           ...+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~  242 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGG---KVTLCYRNNLIL---RGFD-----------ETI-----------REEVT  242 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTC---EEEEEESSSSSC---TTSC-----------HHH-----------HHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHH
Confidence            57999999999999999999999   76   899999876421   0000           000           12345


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccCCCCCc
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +.+++.||+++++++|.+++.+.   ..+.+.+|+++.+|.||+|+|..|..
T Consensus       243 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          243 KQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             HHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence            67788999999999999998653   36788888889999999999988763

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.33  E-value=2.7e-06  Score=87.57  Aligned_cols=103  Identities=21%  Similarity=0.277  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC--cch-----------hhccCHHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK  282 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~--~~~-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~  282 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++..  .+.           +....+++...+.+.+++.|++++.++++.
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            4579999999999999999999999999997531  110           001234677788888899999999999999


Q ss_pred             EEEeCCC-CcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          283 NLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       283 ~i~~~~~-~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                      +++...+ +....+.+.+|+++.+|.||+|+|..|..
T Consensus       292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          292 KLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            9974321 22345788889899999999999988753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.32  E-value=8.6e-07  Score=90.66  Aligned_cols=98  Identities=17%  Similarity=0.261  Sum_probs=76.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      .++++|||||+.|+.+|..|++.   |.   +|+++++.+...   +.+.           ..+           ...+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~  238 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGG---QVDLAYRGDMIL---RGFD-----------SEL-----------RKQLT  238 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC---EEEEEESSSSSS---TTSC-----------HHH-----------HHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcC---eEEEEEcCCCcc---cccC-----------HHH-----------HHHHH
Confidence            57999999999999999999999   76   899999886421   0000           000           12345


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccCCCCCc
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +.+++.||+++++++|.+++.+.   ..+.+++|+++.+|.||+|+|..|..
T Consensus       239 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          239 EQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence            66788999999999999998653   36788888889999999999988763

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.32  E-value=2.6e-07  Score=92.34  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCc-EEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~-V~lie~~~~   97 (497)
                      ..+||+|||||++|+++|..|++.|+   + |+|+|+.+.
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~~v~v~E~~~~   39 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGI---GKVTLLESSSE   39 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEECCCC
Confidence            35799999999999999999999998   8 999999865

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.32  E-value=3.9e-06  Score=87.53  Aligned_cols=101  Identities=17%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  254 (497)
                      ..+|+|||+|..|+.+|..|++.|.+|+|+++.+.+...                                         
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            357999999999999999999999999999987543210                                         


Q ss_pred             ----------------------------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          255 ----------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       255 ----------------------------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                                                                    ..+..+...+.+.+++.||+++++++++++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~  285 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD  285 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence                                                          0012344566677788999999999999998654


Q ss_pred             CCcEEEEEeC--CCc--EEEcCEEEEeccCcC
Q 010917          289 DGRVAAVKLE--DGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       289 ~~~v~~v~~~--~g~--~i~~D~vv~a~G~~p  316 (497)
                      ++++.+|...  +|+  ++.+|.||+|+|...
T Consensus       286 ~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          286 KGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             TSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             CCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            4777666654  675  689999999999754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.31  E-value=2.8e-06  Score=81.59  Aligned_cols=99  Identities=19%  Similarity=0.270  Sum_probs=76.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---c--------hhh----ccCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++...   +        .+.    ...+++...+.+.+++.|++++.+. +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            5799999999999999999999999999985410   0        011    1224677778888899999999986 8


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      ..++..+ +.+ .+ +.+++++.+|.+|+|+|..|...
T Consensus        85 ~~i~~~~-~~~-~v-~~~~~~~~~~~lv~AtG~~~~~~  119 (320)
T 1trb_A           85 NKVDLQN-RPF-RL-NGDNGEYTCDALIIATGASARYL  119 (320)
T ss_dssp             EEEECSS-SSE-EE-EESSCEEEEEEEEECCCEEECCC
T ss_pred             eEEEecC-CEE-EE-EeCCCEEEcCEEEECCCCCcCCC
Confidence            8887543 332 33 56788899999999999987643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.31  E-value=8.9e-07  Score=91.33  Aligned_cols=97  Identities=20%  Similarity=0.233  Sum_probs=75.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  140 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (497)
                      ++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l~  266 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKD-----------NET-----------RAYVLDRMK  266 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCS-----------HHH-----------HHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccc---cccc-----------HHH-----------HHHHHHHHH
Confidence            899999999999999999999987   899999876421   0000           000           123456778


Q ss_pred             HcCcEEEeCCcEEEEec--CC----CEEEECCCc-EEEeccEEeccCCCCCc
Q 010917          141 EKGIEMIYQDPVTSIDI--EK----QTLITNSGK-LLKYGSLIVATGCTASR  185 (497)
Q Consensus       141 ~~~v~~~~~~~v~~i~~--~~----~~v~~~~g~-~i~~d~lvlAtG~~~~~  185 (497)
                      +.|++++++++|.+++.  +.    ..+.+++|+ ++.+|.||+|+|..|..
T Consensus       267 ~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          267 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred             hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence            89999999999999986  33    346777887 89999999999988763

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.30  E-value=1.4e-06  Score=89.42  Aligned_cols=34  Identities=15%  Similarity=0.437  Sum_probs=31.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+||+|||||++|+++|+.|+++|+   +|+|+|+++
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~---~V~llE~~~   36 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGL---SVLMLEAQD   36 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC---CEEEEECCC
Confidence            4799999999999999999999998   899999975

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.30  E-value=5.4e-07  Score=92.00  Aligned_cols=98  Identities=13%  Similarity=0.169  Sum_probs=74.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+           ...+           ...+.+.+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~-----------~~~~-----------~~~l~~~l  236 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLM---QGA-----------DRDL-----------VKVWQKQN  236 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTS-----------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---ccc-----------CHHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999876421   000           0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCC--EEEECC----CcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ--TLITNS----GKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~----g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++++++|.+++.+..  .+.+.+    |+++.+|.||+|+|..|..
T Consensus       237 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          237 EYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             GGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             HhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence            788999999999999976543  466665    6779999999999988763

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.29  E-value=1.9e-06  Score=89.01  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..+||||||||+||++||..|++ |.   +|+|+||.+.
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~---~V~vlEk~~~   41 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QH---QVIVLSKGPV   41 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TS---CEEEECSSCT
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CC---cEEEEECCCC
Confidence            35799999999999999999999 87   8999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.29  E-value=7.5e-07  Score=90.89  Aligned_cols=98  Identities=17%  Similarity=0.322  Sum_probs=73.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.+
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l  234 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASMD-----------GEV-----------AKATQKFL  234 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSSC-----------HHH-----------HHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC---EEEEEEeCCccc---cccC-----------HHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999886421   0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEec--CCC--EEEEC-----CCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDI--EKQ--TLITN-----SGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~--~~~--~v~~~-----~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++++++|.+++.  +..  .+.+.     +++++.+|.||+|+|..|..
T Consensus       235 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          235 KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred             HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence            889999999999999986  443  44554     34679999999999988763

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.29  E-value=3.3e-07  Score=94.96  Aligned_cols=45  Identities=20%  Similarity=0.386  Sum_probs=35.6

Q ss_pred             HHHcCcEEEeCCcEEEEecCC--C--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~--~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +.+.|++++.+ +|+.++.+.  .  .|.+.+|+++.+|.||.|+|....
T Consensus       175 a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          175 AVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            34579999998 899987642  2  577788878999999999998644

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.28  E-value=9.7e-07  Score=89.94  Aligned_cols=99  Identities=11%  Similarity=0.173  Sum_probs=73.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...-.  .+           ..++           ...+.+.+
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--~~-----------~~~~-----------~~~l~~~l  230 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGA---DVTAVEFLGHVGGV--GI-----------DMEI-----------SKNFQRIL  230 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSCS--SC-----------CHHH-----------HHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC---EEEEEeccCccCCc--cc-----------CHHH-----------HHHHHHHH
Confidence            4799999999999999999999987   89999987642100  00           0000           12345677


Q ss_pred             HHcCcEEEeCCcEEEEecCCC---EEEE-----CCCcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ---TLIT-----NSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~---~v~~-----~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||+++++++|.+++.+..   .+.+     .+++++.+|.||+|+|..|..
T Consensus       231 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          231 QKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred             HHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence            889999999999999986552   3442     456789999999999988763

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.28  E-value=1.5e-06  Score=89.53  Aligned_cols=98  Identities=10%  Similarity=0.086  Sum_probs=75.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      ..+++++|||||+.|+..|..+++.|.   +|||++++..++..            +   .++           .....+
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~---~VTii~~~~~L~~~------------D---~ei-----------~~~l~~  271 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLGY---DVTVAVRSIVLRGF------------D---QQC-----------AVKVKL  271 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEESSCSSTTS------------C---HHH-----------HHHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcCC---eEEEeccccccccc------------c---hhH-----------HHHHHH
Confidence            345799999999999999999999997   89999875432110            0   000           123466


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      .+++.|+++++++.+..+.....  .+.+.++..+.+|.|++|+|-+|+
T Consensus       272 ~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          272 YMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGD  320 (542)
T ss_dssp             HHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCC
Confidence            78889999999999998876655  456678888999999999997765

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.27  E-value=1.3e-06  Score=89.63  Aligned_cols=99  Identities=14%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+           ...+           ...+.+.
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~-----------d~~~-----------~~~l~~~  232 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGV---PVTVVASQDHVL---PYE-----------DADA-----------ALVLEES  232 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTC---CEEEECSSSSSS---CCS-----------SHHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc-----------CHHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   000           0000           1234567


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.|++++++++|.+++.+..  .+.+.+|+++.+|.||+|+|..|..
T Consensus       233 l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          233 FAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            7889999999999999986553  5666788889999999999988764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.27  E-value=9.7e-07  Score=89.69  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=74.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+           ...+           ...+.+.
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~-----------~~~~-----------~~~l~~~  221 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGV---DVTIVEFLPRAL---PNE-----------DADV-----------SKEIEKQ  221 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTS-----------CHHH-----------HHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc-----------CHHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   000           0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEEC-CC--cEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~-~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||++++++++.+++.+..  .+.+. +|  +++.+|.||+|+|..|..
T Consensus       222 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          222 FKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             HHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred             HHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence            7888999999999999986543  44543 56  579999999999988763

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.27  E-value=2.7e-06  Score=82.33  Aligned_cols=100  Identities=18%  Similarity=0.267  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC---cc--------hhh----ccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGAS  280 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~---~~--------~~~----~~~~~~~~~~~~~l~~~GV~i~~~~~  280 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++..   .+        .+.    ...+++...+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            4689999999999999999999999999998531   00        011    1124677778888889999999987 


Q ss_pred             EEEEEeCCCCcEEEE-EeCCCcEEEcCEEEEeccCcCCCc
Q 010917          281 IKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       281 v~~i~~~~~~~v~~v-~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      +.+++. ++. . .+ .+.+|+++.+|.+|+|+|..|...
T Consensus        93 v~~i~~-~~~-~-~v~~~~~g~~~~~d~lviAtG~~~~~~  129 (335)
T 2a87_A           93 VESVSL-HGP-L-KSVVTADGQTHRARAVILAMGAAARYL  129 (335)
T ss_dssp             EEEEEC-SSS-S-EEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEEe-CCc-E-EEEEeCCCCEEEeCEEEECCCCCccCC
Confidence            888875 222 2 34 677888999999999999987643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.26  E-value=1.6e-06  Score=88.69  Aligned_cols=98  Identities=17%  Similarity=0.297  Sum_probs=73.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...      .. .+      ...+           ...+.+.
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l------~~-~~------~~~~-----------~~~l~~~  245 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGK---EVVLIDVVDTCL------AG-YY------DRDL-----------TDLMAKN  245 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTT------TT-TS------CHHH-----------HHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC---eEEEEEcccchh------hh-HH------HHHH-----------HHHHHHH
Confidence            45899999999999999999999987   899999876421      00 00      0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.||+++++++|.+++.+.+  .+.+ +++++.+|.||+|+|..|.
T Consensus       246 l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          246 MEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             HHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence            7788999999999999987543  3555 6678999999999998876

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.26  E-value=2.4e-07  Score=92.48  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~   96 (497)
                      ..+||+|||||++|+++|+.|+++  |+   +|+|||+..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~---~V~vlE~~~   71 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGR---SLLLVEEGG   71 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCC---eEEEEeCCC
Confidence            347999999999999999999999  87   899999974

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.25  E-value=2.9e-06  Score=88.10  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeccCcC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKP  316 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vv~a~G~~p  316 (497)
                      ..+...+.+.+++.|++++++++|+++... ++.+..|.+.+   |  .++.+|.||.|+|...
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            456677778888999999999999999864 56666676653   3  4799999999999754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.25  E-value=4.6e-06  Score=79.80  Aligned_cols=99  Identities=14%  Similarity=0.160  Sum_probs=74.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----c----h------------hhccCHHHHHHHHHHHHHCCcEEEc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----L----L------------QRLFTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~----~----~------------~~~~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                      .|+|||+|+.|+.+|..++++|.+|+++++.+.    +    .            .....+++...+.+.+++.++++..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            699999999999999999999999999987531    0    0            0012256777788888999999886


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          278 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       278 ~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      .. +.......+.  ..+.+.++.++.+|.+|+|||.+|...
T Consensus        86 ~~-v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~~  124 (314)
T 4a5l_A           86 ET-IDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKRM  124 (314)
T ss_dssp             CC-EEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred             eE-EEEeecCCCc--eEEEECCCeEEEEeEEEEccccccccc
Confidence            65 5555433222  346678889999999999999988643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.24  E-value=4.9e-06  Score=84.02  Aligned_cols=102  Identities=17%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchhhc-------------------------------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQRL-------------------------------------  255 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~~-------------------------------------  255 (497)
                      ..++|+|||+|+.|+.+|..|++.|.  +|+++++.+.+....                                     
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            35789999999999999999999999  999999874321000                                     


Q ss_pred             ----------------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc---
Q 010917          256 ----------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS---  301 (497)
Q Consensus       256 ----------------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g~---  301 (497)
                                                  ....+.+++.+..++.++.++++++|++++..+++.  .|++.+   |+   
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~--~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSW--VVTYKGTKAGSPIS  162 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEE--EEEEEESSTTCCEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeE--EEEEeecCCCCeeE
Confidence                                        012455666676666688899999999998653322  344444   66   


Q ss_pred             EEEcCEEEEeccC--cCCC
Q 010917          302 TIDADTIVIGIGA--KPTV  318 (497)
Q Consensus       302 ~i~~D~vv~a~G~--~p~~  318 (497)
                      ++.+|.||+|+|.  .|+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEEESEEEECCCSSSSBCB
T ss_pred             EEEeCEEEECCCCCCCCCC
Confidence            7999999999998  6654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.24  E-value=2.2e-06  Score=86.62  Aligned_cols=100  Identities=23%  Similarity=0.404  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcchhh------cc-----CHHHHHHHHHHH-HHCCcEEEcCCeE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR------LF-----TPSLAQRYEQLY-QQNGVKFVKGASI  281 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~------~~-----~~~~~~~~~~~l-~~~GV~i~~~~~v  281 (497)
                      .++|+|||+|+.|+.+|..|++.  +.+|+++++.+.+...      .+     ...+.....+.+ ++.||+++.++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            36899999999999999999998  7899999988743210      00     111112222333 6789999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeccCcCCCc
Q 010917          282 KNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~~p~~~  319 (497)
                      ..++..  .  ..+.+.++ .++.+|.+|+|+|.+|...
T Consensus        83 ~~i~~~--~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDTG--Y--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECSS--E--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEecC--C--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            998632  2  24566777 4899999999999988644

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.23  E-value=5.6e-06  Score=79.44  Aligned_cols=99  Identities=15%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---c--------hhh---ccCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR---LFTPSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------~~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++...   +        .+.   ....++...+.+.+++.|++++. .++
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   94 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV   94 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence            35799999999999999999999999999998421   0        111   11245667777888889999998 688


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                      .+++..++ .+ .+.+ ++.++.+|.+|+|+|..|..
T Consensus        95 ~~i~~~~~-~~-~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           95 RSIKKTQG-GF-DIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEEETT-EE-EEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEEeCC-EE-EEEE-CCCEEEeCEEEECCCCCccc
Confidence            88875432 22 3555 56789999999999988764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.23  E-value=2.1e-06  Score=86.93  Aligned_cols=101  Identities=14%  Similarity=0.238  Sum_probs=73.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcchh------hccCH------HHHHHHHHHHHHCCcEEEcCCeEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ------RLFTP------SLAQRYEQLYQQNGVKFVKGASIK  282 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~------~~~~~------~~~~~~~~~l~~~GV~i~~~~~v~  282 (497)
                      ++|+|||+|+.|+.+|..|++.  |.+|+++++.+.+..      .....      ++.....+.+++.|++++.+.+|.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  899999998875431      00111      111113466788999999999999


Q ss_pred             EEEeCCCCcEEEEE-eCCCcEEEcCEEEEeccCcCCCc
Q 010917          283 NLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       283 ~i~~~~~~~v~~v~-~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      +++.. +..+ .+. ..+++++.+|.+|+|+|.+|...
T Consensus        83 ~id~~-~~~v-~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDVE-NQLI-AWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEETT-TTEE-EEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEECC-CCEE-EEEecCceEEEEcCEEEECCCcccCCC
Confidence            99854 3322 232 23556899999999999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.23  E-value=1.6e-06  Score=88.23  Aligned_cols=99  Identities=15%  Similarity=0.240  Sum_probs=73.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+           ...+           ...+.+.
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~-----------d~~~-----------~~~l~~~  224 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGA---EVTVVEFAPRCA---PTL-----------DEDV-----------TNALVGA  224 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTS-----------CHHH-----------HHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCC---EEEEEecCCccc---ccC-----------CHHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   000           0000           1234566


Q ss_pred             H-HHcCcEEEeCCcEEEEecCCC--EEEEC--CC--cEEEeccEEeccCCCCCc
Q 010917          139 Y-KEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~-~~~~v~~~~~~~v~~i~~~~~--~v~~~--~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      + ++.||+++++++|.+++.+..  .+.+.  +|  +++.+|.||+|+|..|..
T Consensus       225 l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          225 LAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             HHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred             HhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence            7 889999999999999986543  45554  56  579999999999988763

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.23  E-value=5.6e-06  Score=82.04  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-----------h-------h------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------Q-------R------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~-------~------------------------  254 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+++.+...           +       .                        
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            369999999999999999999999999999876310           0       0                        


Q ss_pred             --c--------------cC-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeccC
Q 010917          255 --L--------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  314 (497)
Q Consensus       255 --~--------------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vv~a~G~  314 (497)
                        .              ++ ..+...+.+.+.+.|++++.+++|++++..+++.+ .+++ .+|+  ++.+|.||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence              0              01 23445566667778999999999999986433333 4565 6786  7999999999998


Q ss_pred             cCCC
Q 010917          315 KPTV  318 (497)
Q Consensus       315 ~p~~  318 (497)
                      ....
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            7653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.23  E-value=1.8e-06  Score=87.33  Aligned_cols=98  Identities=15%  Similarity=0.300  Sum_probs=73.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...      .. .+      ...+           ...+.+.+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l------~~-~~------~~~~-----------~~~l~~~l  201 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNY---NVNLIDGHERVL------YK-YF------DKEF-----------TDILAKDY  201 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSTT------TT-TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCC---EEEEEEcCCchh------hh-hh------hhhH-----------HHHHHHHH
Confidence            5799999999999999999999986   899999876421      00 00      0000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEE--EECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v--~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ++.|++++++++|.+++.++..+  ...+|+++.+|.||+|+|..|.
T Consensus       202 ~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          202 EAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence            88999999999999998633322  2346788999999999998876

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.23  E-value=5.3e-06  Score=81.76  Aligned_cols=63  Identities=16%  Similarity=0.290  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcC
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                      .+...+.+.+++.|++++.+++|++++.. ++.+ .|.+.+| ++.+|.||+|+|.... .++..++
T Consensus       165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~~~  227 (382)
T 1ryi_A          165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG-MFFKQLG  227 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH-HHHHHTT
T ss_pred             HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH-HHHHhcC
Confidence            35566777788899999999999999865 4445 6777777 7999999999998653 4555544

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.22  E-value=1.3e-06  Score=83.69  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~   98 (497)
                      ..+||+|||||++|+++|..|+++  |+   +|+|||+.+..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~---~V~LiEk~~~~  116 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDL---RITIVEAGVAP  116 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTS---CEEEEESSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC---EEEEEeCCCcc
Confidence            358999999999999999999998  76   89999998654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.21  E-value=1.5e-06  Score=88.58  Aligned_cols=97  Identities=18%  Similarity=0.267  Sum_probs=73.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+           ...+           ...+.+.
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~-----------~~~~-----------~~~l~~~  236 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGK---KVRMIERNDHIG---TIY-----------DGDM-----------AEYIYKE  236 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTC---EEEEECCGGGTT---SSS-----------CHHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeCCchh---hcC-----------CHHH-----------HHHHHHH
Confidence            45899999999999999999999987   899999875421   000           0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCE--EEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~--v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.|++++++++|.+++.+.+.  +.++ +.++.+|.||+|+|..|.
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          237 ADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             HHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEES
T ss_pred             HHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcC
Confidence            78899999999999999876542  4454 457999999999998875

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.21  E-value=9e-06  Score=84.12  Aligned_cols=100  Identities=17%  Similarity=0.237  Sum_probs=77.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-ch-----------------------hh------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~~-----------------------~~------------------  254 (497)
                      -.|+|||+|..|+++|..+++.|.+|.|+++.+. +.                       ..                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            5799999999999999999999999999997631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          255 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       255 -----------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                                 ..+ ..+...+.+.+++ .|++++ +..|+++..+ ++.+..|.+.+|+++.+|.||+|+|..++.
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence                       001 1345566677777 599995 5689998754 667778999999999999999999987553

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.21  E-value=1.6e-06  Score=90.56  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=32.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+||||||||+||++||..|++.|.   +|+|+||.+.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~---~V~vlEK~~~   41 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVFP   41 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence            4699999999999999999999987   8999999753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.20  E-value=2.3e-06  Score=87.40  Aligned_cols=98  Identities=20%  Similarity=0.343  Sum_probs=75.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||+|+.|+..|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~-----------~~~-----------~~~l~~~  241 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGV---KTTLLHRGDLIL---RNFD-----------YDL-----------RQLLNDA  241 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCC---eEEEEECCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876421   0000           000           1234556


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.|++++++++|.+++.+..  .+.+++|+++.+|.||+|+|..|.
T Consensus       242 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          242 MVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             HHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence            7788999999999999987543  678888888999999999998765

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=1.2e-06  Score=89.28  Aligned_cols=99  Identities=16%  Similarity=0.314  Sum_probs=74.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~-----------~~~-----------~~~l~~~  227 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV---PTMD-----------AEI-----------RKQFQRS  227 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---cccc-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999886421   0000           000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEEC---CC--cEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~---~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||+++++++|.+++.+..  .+.+.   +|  +++.+|.||+|+|..|..
T Consensus       228 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          228 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred             HHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence            7889999999999999987653  44443   44  679999999999988763

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.20  E-value=4.5e-06  Score=79.75  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=74.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEE-EecCCcch------------hh----ccCHHHHHHHHHHHHHCCcEEEcC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHLL------------QR----LFTPSLAQRYEQLYQQNGVKFVKG  278 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtl-v~~~~~~~------------~~----~~~~~~~~~~~~~l~~~GV~i~~~  278 (497)
                      .++|+|||+|+.|+.+|..|++.|.+|++ +++. .+.            +.    ....++..++.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            35899999999999999999999999999 8873 221            11    012467788888889999999998


Q ss_pred             CeEEEEEeCCC-CcEEEE-EeCCCcEEEcCEEEEeccCcCCCc
Q 010917          279 ASIKNLEAGSD-GRVAAV-KLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       279 ~~v~~i~~~~~-~~v~~v-~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                       ++.++ ..++ +.. .+ ...++ ++.+|.+|+|+|..|+..
T Consensus        83 -~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 -GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             -CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             -EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence             78888 4331 222 32 22334 899999999999987654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.20  E-value=5.3e-06  Score=82.39  Aligned_cols=100  Identities=17%  Similarity=0.275  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----ccCHHHHH----------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQ----------------------------  262 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----~~~~~~~~----------------------------  262 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.....     .+.+....                            
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987653110     01221111                            


Q ss_pred             ---------------HHHHHHHH--CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          263 ---------------RYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       263 ---------------~~~~~l~~--~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                     .+.+.|.+  .|++++.+++|++++..+++ + .+++.+|+++.+|.||.|.|....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-V-QMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-E-EEEETTSCEEEESEEEECCCTTCH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE-E-EEEECCCCEEECCEEEECCCcchh
Confidence                           12222222  38899999999999875443 3 478889999999999999998753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.20  E-value=1.7e-05  Score=82.10  Aligned_cols=98  Identities=14%  Similarity=0.185  Sum_probs=75.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--------hh------------cc----------------CHHH
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QR------------LF----------------TPSL  260 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------~~------------~~----------------~~~~  260 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.        +.            .+                .+++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999875421        00            00                1334


Q ss_pred             HHHHHHHHHHCC--cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          261 AQRYEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       261 ~~~~~~~l~~~G--V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      .+++....++.+  ++++++++|.+++..+++....|.+.+|+++.+|.||+|+|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            556666666665  678899999999865444344678889989999999999995

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.19  E-value=2.5e-06  Score=86.65  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=75.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-----CcEEEEecCCcchhh--------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHLLQR--------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g-----~~Vtlv~~~~~~~~~--------------------------------------  254 (497)
                      +|+|||+|+.|+.+|..|++.|     .+|+++++.+.+...                                      
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            7999999999999999999999     999999987632100                                      


Q ss_pred             ----------c--cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCC-CcE--EEEEeCCCc----EEEcCEEEEeccCc
Q 010917          255 ----------L--FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRV--AAVKLEDGS----TIDADTIVIGIGAK  315 (497)
Q Consensus       255 ----------~--~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~-~~v--~~v~~~~g~----~i~~D~vv~a~G~~  315 (497)
                                .  ...++.+++....++.+++++++++|++++..++ +..  ..|.+.+|+    ++.+|.||+|+|..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence                      0  0134445565666667899999999999976421 222  246666665    89999999999998


Q ss_pred             CCCc
Q 010917          316 PTVS  319 (497)
Q Consensus       316 p~~~  319 (497)
                      |...
T Consensus       192 p~~p  195 (463)
T 3s5w_A          192 PRIP  195 (463)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            8644

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.19  E-value=9.1e-07  Score=93.49  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHH-cCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~~V~lie~~~~~   98 (497)
                      ..++|+||||||+||++|..|++ .|+   +|+|||+.+..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~---~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDI---RTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTS---CEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCC---CEEEEeCCCCC
Confidence            35799999999999999999999 898   89999998643

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.19  E-value=1.1e-05  Score=83.80  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=76.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-ch-----------------------hh------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~~-----------------------~~------------------  254 (497)
                      -.|+|||||..|+++|..+++.|.+|+|+++.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            4799999999999999999999999999997631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          255 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 -----------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                 ..+ ..+...+.+.+++ .|++++ +..|+++..+ ++.+..|.+.+|.++.+|.||+|+|..+.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                       011 1345566777777 699995 5689998754 56777888989989999999999998654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.18  E-value=2.4e-06  Score=89.02  Aligned_cols=98  Identities=15%  Similarity=0.274  Sum_probs=74.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.
T Consensus       150 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  201 (565)
T 3ntd_A          150 NVEHATVVGGGFIGLEMMESLHHLGI---KTTLLELADQVM---TPVD-----------REM-----------AGFAHQA  201 (565)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSC---TTSC-----------HHH-----------HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC---cEEEEEcCCccc---hhcC-----------HHH-----------HHHHHHH
Confidence            34799999999999999999999987   899999876421   0000           000           1234556


Q ss_pred             HHHcCcEEEeCCcEEEEec-------------------CCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDI-------------------EKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~-------------------~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.||++++++++.+++.                   ...  .+.+.+|+++.+|.||+|+|..|.
T Consensus       202 l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          202 IRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             HHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence            7889999999999999876                   222  566788889999999999998775

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.17  E-value=2.8e-06  Score=86.36  Aligned_cols=96  Identities=18%  Similarity=0.272  Sum_probs=73.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   + +.           ..+           ...+.+.
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~-~~-----------~~~-----------~~~l~~~  225 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLGS---KVTVLARNTLFF---R-ED-----------PAI-----------GEAVTAA  225 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---T-SC-----------HHH-----------HHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEEECCccC---C-CC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   0 00           000           1234567


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.|++++++++|.+++.++.  .+.++ +.++.+|.||+|+|..|.
T Consensus       226 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          226 FRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEES
T ss_pred             HHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcC
Confidence            7889999999999999986554  35555 457999999999998876

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.17  E-value=4.3e-06  Score=85.11  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcch------hhccC------HHH-------HHHHHHHHHHCCcE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLFT------PSL-------AQRYEQLYQQNGVK  274 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~------~~~~~------~~~-------~~~~~~~l~~~GV~  274 (497)
                      .++|+|||+|+.|+.+|..|++.  |.+|+++++.+.+.      +..+.      ..+       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  89999999987641      11111      111       11222222357999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeccCcCCCc
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vv~a~G~~p~~~  319 (497)
                      ++.++++.+++.. +..+ .+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~V~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDRA-AHTV-EIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEECC-CCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            9999999999853 3333 3332 3465  799999999999988654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.17  E-value=2.2e-06  Score=89.74  Aligned_cols=34  Identities=32%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+||||||||+||++||..|++.|.   +|+|+||..
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~---~V~vlEK~~   51 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGF---NTACVTKLF   51 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence            4799999999999999999999997   899999975

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.16  E-value=1.2e-05  Score=81.44  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=77.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh---------------h---------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------R---------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------~---------------------------  254 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..               .                           
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999998754210               0                           


Q ss_pred             ---------ccC-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccCcCC
Q 010917          255 ---------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 ---------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~~p~  317 (497)
                               .++ ..+.+.+.+.+.+.|++++.+++|+++..+ ++.+.+|.+.   +|+  ++.+|.||.|.|....
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence                     001 235566777778899999999999999864 4555545554   675  7999999999998764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.15  E-value=1.9e-06  Score=93.97  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .++||+|||||++|+++|++|+++|+.  +|+|||++..
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~--~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWN--NITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCC--CEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCC
Confidence            357999999999999999999999862  6999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.15  E-value=1.4e-05  Score=83.03  Aligned_cols=101  Identities=18%  Similarity=0.305  Sum_probs=76.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-ch-----------------------hh----------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR----------------  254 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~~-----------------------~~----------------  254 (497)
                      ..-.|+|||+|..|+++|..+++.|.+|+++++.+. +.                       ..                
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l   99 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML   99 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence            345899999999999999999999999999997631 10                       00                


Q ss_pred             -------------ccC-HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          255 -------------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 -------------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                   ..+ ..+...+.+.+++ .|++++.+ .|+.+..+ ++.+.+|.+.+|+++.+|.||+|+|..++
T Consensus       100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                         011 1345566677777 49999754 78888653 56677788899999999999999998755

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.15  E-value=1.6e-05  Score=78.34  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=43.6

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+.+.+++.|++++.+++|++++.. ++.+..|.+.+| ++.+|.||+|+|....
T Consensus       153 ~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s~  206 (382)
T 1y56_B          153 TAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWAN  206 (382)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred             HHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhHH
Confidence            44566778899999999999999865 456656778777 7999999999998653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.15  E-value=2.7e-05  Score=74.62  Aligned_cols=139  Identities=20%  Similarity=0.228  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcchhh-------------------------------------cc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR-------------------------------------LF  256 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~-------------------------------------~~  256 (497)
                      ...|+|||+|+.|+.+|..|++.  |.+|+|+++.+.+...                                     ..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            35799999999999999999997  9999999987533200                                     00


Q ss_pred             CHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCC----------------C--cEEEEEeC--------------CCcEE
Q 010917          257 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSD----------------G--RVAAVKLE--------------DGSTI  303 (497)
Q Consensus       257 ~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~----------------~--~v~~v~~~--------------~g~~i  303 (497)
                      ..++...+.+.+.+ .|++++.++.+.++...++                +  ++.+|...              +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            12334556666666 5999999999998865432                2  66666542              23479


Q ss_pred             EcCEEEEeccCcCCC-c----chhhcCCccc-CCCEEec---------CCCCCCCCcEEEeccccc
Q 010917          304 DADTIVIGIGAKPTV-S----PFERVGLNSS-VGGIQVD---------GQFRTRMPGIFAIGDVAA  354 (497)
Q Consensus       304 ~~D~vv~a~G~~p~~-~----~~~~~gl~~~-~g~i~vd---------~~~~t~~~~iya~GD~~~  354 (497)
                      .++.||.|+|..... .    .+...++... .|.-..+         ++-+--+|++|++|=.+.
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~  304 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELS  304 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHH
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhH
Confidence            999999999987642 1    1334444311 1111111         111113699999997764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.13  E-value=3.2e-06  Score=86.47  Aligned_cols=98  Identities=14%  Similarity=0.165  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           ...+.+.
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~  224 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGV---IVKVFGRSGSVA---NLQDE-----------EM-----------KRYAEKT  224 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTC---EEEEECCTTCCT---TCCCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---ccCCH-----------HH-----------HHHHHHH
Confidence            35899999999999999999999987   899999886531   00000           00           1223445


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEEC--CC--cEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~--~g--~~i~~d~lvlAtG~~~~~  185 (497)
                      +++. |++++++++..+..+..  .+.+.  +|  .++.+|.||+|+|..|..
T Consensus       225 l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~  276 (492)
T 3ic9_A          225 FNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV  276 (492)
T ss_dssp             HHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESC
T ss_pred             HhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCC
Confidence            5556 99999999999976543  44443  66  679999999999988763

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.13  E-value=4.1e-06  Score=85.32  Aligned_cols=99  Identities=15%  Similarity=0.276  Sum_probs=74.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+..|..|++.|.   +|+++++.+...   +.+           ...+           ...+.+.
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~-----------~~~~-----------~~~l~~~  230 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAV-----------DEQV-----------AKEAQKI  230 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTS-----------CHHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---ccc-----------CHHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   000           0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCC---cEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g---~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||++++++++.+++.+..  .+.+.++   +++.+|.||+|+|..|..
T Consensus       231 l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          231 LTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             HHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             HHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence            7888999999999999986543  4555544   578999999999988763

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.12  E-value=4.1e-06  Score=85.01  Aligned_cols=98  Identities=18%  Similarity=0.290  Sum_probs=75.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+..|..|++.|.   +|+++++.+...   +.+.           ..+           ...+.+.
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vt~v~~~~~~l---~~~~-----------~~~-----------~~~l~~~  220 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGV---KTTLIYRGKEIL---SRFD-----------QDM-----------RRGLHAA  220 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876421   0000           000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCC-C--EEE-ECCCcEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEK-Q--TLI-TNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~-~--~v~-~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.|++++++++|.+++.+. .  .+. +++|+ +.+|.||+|+|..|..
T Consensus       221 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          221 MEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNT  270 (463)
T ss_dssp             HHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred             HHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence            788999999999999998753 2  577 78887 9999999999987763

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.11  E-value=2.2e-05  Score=81.82  Aligned_cols=101  Identities=20%  Similarity=0.299  Sum_probs=79.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC------CCcEEEEecCCcchhh------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLLQR------------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~------g~~Vtlv~~~~~~~~~------------------------------------  254 (497)
                      -+|+|||+|+.|+-+|..|++.      |.+|+|+++.+.+...                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      9999999976432110                                    


Q ss_pred             c--------c---C--------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC------CC---
Q 010917          255 L--------F---T--------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------DG---  300 (497)
Q Consensus       255 ~--------~---~--------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~------~g---  300 (497)
                      .        +   +              ..+...+.+.+++.||++++++.++++..++++.+..|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence            0        0   0              13456677778889999999999999987666777777775      33   


Q ss_pred             ------cEEEcCEEEEeccCcCC
Q 010917          301 ------STIDADTIVIGIGAKPT  317 (497)
Q Consensus       301 ------~~i~~D~vv~a~G~~p~  317 (497)
                            .++.+|.||.|.|....
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCH
T ss_pred             cccCCceEEECCEEEEeeCCCch
Confidence                  68999999999999764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.11  E-value=1.8e-05  Score=75.62  Aligned_cols=98  Identities=19%  Similarity=0.230  Sum_probs=73.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---ch--------h---hccCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------Q---RLFTPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~~--------~---~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      .|+|||+|+.|+.+|..|++.|.+|+++++...   ++        +   ....+++.........+.++.+..+.....
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            589999999999999999999999999987531   11        0   011245666677777888888888876666


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      .... ..   .+...+++++.+|.+|+|||.+|...
T Consensus        88 ~~~~-~~---~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           88 EDKG-EY---KVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EECS-SC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eeee-cc---eeeccCCeEEEeceeEEcccCccCcC
Confidence            5532 22   34567788999999999999988654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.11  E-value=1.4e-05  Score=79.31  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=72.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------ccCHHH------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSL------------------------------  260 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------~~~~~~------------------------------  260 (497)
                      -+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...      .+.+..                              
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            37999999999999999999999999999986543211      001100                              


Q ss_pred             -----------------------------HHHHHHHHH-HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917          261 -----------------------------AQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  310 (497)
Q Consensus       261 -----------------------------~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~  310 (497)
                                                   ...+.+.|. ..+..+++++++++++..+++.+ .+++.||+++.+|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVg  160 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVG  160 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEE
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEE
Confidence                                         011223222 23456888999999987666655 68899999999999999


Q ss_pred             eccCcC
Q 010917          311 GIGAKP  316 (497)
Q Consensus       311 a~G~~p  316 (497)
                      |-|...
T Consensus       161 ADG~~S  166 (412)
T 4hb9_A          161 ADGSNS  166 (412)
T ss_dssp             CCCTTC
T ss_pred             CCCCCc
Confidence            999764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.11  E-value=3.4e-06  Score=86.81  Aligned_cols=45  Identities=11%  Similarity=0.139  Sum_probs=35.5

Q ss_pred             HHHcCcEEEeCCcEEEEecC--C--CEEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIE--K--QTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~--~--~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +.+.|++++.+ +|+++..+  .  ..|.+++|+++.+|.||.|+|....
T Consensus       183 a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          183 AIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            34569999998 99998763  2  2467788888999999999998643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.10  E-value=3.7e-06  Score=86.03  Aligned_cols=99  Identities=17%  Similarity=0.235  Sum_probs=73.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+..|..|++.|.   +|+++++.+...-   .+           ...+           ...+.+.
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~---~~-----------d~~~-----------~~~l~~~  248 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGA---KVTVVEFLDTILG---GM-----------DGEV-----------AKQLQRM  248 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSSS---SS-----------CHHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEeccccccc---cC-----------CHHH-----------HHHHHHH
Confidence            35799999999999999999999987   8999998764310   00           0000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECC---C--cEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS---G--KLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~---g--~~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||++++++++.++..+..  .+.+.+   |  +++.+|.||+|+|..|..
T Consensus       249 l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          249 LTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred             HHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence            7888999999999999876554  344442   4  579999999999988763

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.10  E-value=3.5e-06  Score=88.78  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+||||||||.||++||.+|++.|.   +|+||||.+
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~---~V~vlEK~~   38 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIP   38 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSC
T ss_pred             cccEEEECchHHHHHHHHHHHHCCC---cEEEEeccC
Confidence            4799999999999999999999987   899999975

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.10  E-value=4.9e-06  Score=85.06  Aligned_cols=101  Identities=18%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~-~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      .++|+|||||+.|+.+|..|++.+.. ..+|+++++.+.. ..+      .+ +     ..+           ...+.+.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~~------~l-~-----~~~-----------~~~~~~~  235 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGK------IL-P-----EYL-----------SNWTMEK  235 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTT------TS-C-----HHH-----------HHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-ccc------cC-C-----HHH-----------HHHHHHH
Confidence            57999999999999999999874210 1379999876431 000      00 0     000           1233556


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.||+++++++|..++.+..  .+.+.+|+++.+|.||+|+|..|.
T Consensus       236 l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          236 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence            7788999999999999975443  577889989999999999998876

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.08  E-value=1.8e-05  Score=82.41  Aligned_cols=100  Identities=16%  Similarity=0.223  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  254 (497)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++.+.....                                         
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            468999999999999999999999999999987311000                                         


Q ss_pred             ---------------------ccC-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CC--cEEEcCEEE
Q 010917          255 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIV  309 (497)
Q Consensus       255 ---------------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D~vv  309 (497)
                                           .++ ..+...+.+.+++.|++++.+++|+++... ++.+..|.+. +|  +++.+|.||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence                                 001 245566777788899999999999999854 4444567776 66  579999999


Q ss_pred             EeccCcC
Q 010917          310 IGIGAKP  316 (497)
Q Consensus       310 ~a~G~~p  316 (497)
                      .|+|...
T Consensus       182 ~AdG~~S  188 (591)
T 3i3l_A          182 DAGGSGG  188 (591)
T ss_dssp             ECCGGGC
T ss_pred             ECCCCcc
Confidence            9999865

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.07  E-value=6e-06  Score=78.73  Aligned_cols=37  Identities=22%  Similarity=0.469  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~   98 (497)
                      ..+||+|||||++|++||..|++.  |+   +|+|+|+.+..
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~---~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL---KVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC---eEEEEecCccc
Confidence            346999999999999999999998  76   89999998654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.06  E-value=3.4e-06  Score=86.10  Aligned_cols=97  Identities=13%  Similarity=0.163  Sum_probs=71.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+..|..|++.|.   +|+++++....+    .+.           .++           ...+.+.
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l~----~~d-----------~~~-----------~~~l~~~  236 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGY---EPTVMVRSIVLR----GFD-----------QQM-----------AELVAAS  236 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSCSST----TSC-----------HHH-----------HHHHHHH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCCc----ccC-----------HHH-----------HHHHHHH
Confidence            34789999999999999999999987   899998743211    000           000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecCC---CEEEECCCc-----EEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGK-----LLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~-----~i~~d~lvlAtG~~~~  184 (497)
                      +++.||++++++.+.++....   ..+.+.++.     ++.+|.||+|+|..|.
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          237 MEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             HHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence            788999999999999987632   246665543     7899999999998775

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.06  E-value=2.4e-05  Score=80.32  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=75.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----------------chhh--------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------------LLQR--------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~----------------~~~~--------------------------  254 (497)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++.+.                ++..                          
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            4799999999999999999999999999998741                0000                          


Q ss_pred             -------------------cc-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE--eCCCc--EEEcCEEEE
Q 010917          255 -------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS--TIDADTIVI  310 (497)
Q Consensus       255 -------------------~~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~--~~~g~--~i~~D~vv~  310 (497)
                                         .+ ...+...+.+.+++.|++++.+++|+++... ++.+..+.  ..+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                               00 1234556777778899999999999999864 55554444  45674  799999999


Q ss_pred             eccCcC
Q 010917          311 GIGAKP  316 (497)
Q Consensus       311 a~G~~p  316 (497)
                      |+|...
T Consensus       167 AdG~~S  172 (512)
T 3e1t_A          167 ASGNRT  172 (512)
T ss_dssp             CCCTTC
T ss_pred             CCCcch
Confidence            999865

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.06  E-value=4e-06  Score=86.96  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      .+||+||||||+|+++|..|+++|.   +|+|||+.+..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~---~V~vlEr~~~~   61 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQV---GHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            4699999999999999999999998   89999998643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.05  E-value=4.6e-06  Score=85.00  Aligned_cols=98  Identities=16%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           .....+.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~~~~~l  238 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSFD-----------SMI-----------STNCTEEL  238 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSC-----------HHH-----------HHHHHHHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCC---eEEEEEeCCccc---cccC-----------HHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999876421   0000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCC-C---EEEECC-------CcEEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK-Q---TLITNS-------GKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~-~---~v~~~~-------g~~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||++++++.+.+++... .   .+.+.+       |..+.+|.||+|+|..|..
T Consensus       239 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~  295 (478)
T 3dk9_A          239 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT  295 (478)
T ss_dssp             HHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence            88999999999999987542 2   355554       2578999999999987763

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.04  E-value=4e-06  Score=88.34  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~------g~~~~~V~lie~~~~   97 (497)
                      .+||||||||+|||+||..|++.      |.   +|+||||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~---~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEA---KILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTC---CEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCC---cEEEEEecCC
Confidence            57999999999999999999997      87   8999999753

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.04  E-value=1.9e-05  Score=76.62  Aligned_cols=95  Identities=18%  Similarity=0.196  Sum_probs=69.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHh---CCCcEEEEecCCcchhhc-------------------c---CH---HH---------
Q 010917          218 KVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL-------------------F---TP---SL---------  260 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~~~~~~~-------------------~---~~---~~---------  260 (497)
                      +|+|||+|..|+-+|..|++   .|.+|+++++.+.+..+.                   +   +.   .+         
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~   82 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA   82 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence            69999999999999999999   999999999764321100                   0   00   11         


Q ss_pred             -----------------------------HHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917          261 -----------------------------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  311 (497)
Q Consensus       261 -----------------------------~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a  311 (497)
                                                   ...+....++.|+++++++.|++|+..+++ + .|.+.+|+++.+|.||+|
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vV~A  160 (342)
T 3qj4_A           83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK-W-EVSKQTGSPEQFDLIVLT  160 (342)
T ss_dssp             TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS-E-EEEESSSCCEEESEEEEC
T ss_pred             CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE-E-EEEECCCCEEEcCEEEEC
Confidence                                         112222333348999999999999876444 3 477888888999999999


Q ss_pred             ccC
Q 010917          312 IGA  314 (497)
Q Consensus       312 ~G~  314 (497)
                      ++.
T Consensus       161 ~p~  163 (342)
T 3qj4_A          161 MPV  163 (342)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            874

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.03  E-value=3.3e-05  Score=75.72  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      +...+.+.+++.|++++.+++|++++..+++ + .+.+.+|+ +.+|.||+|+|...
T Consensus       151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~-~v~~~~g~-~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG-V-TIETADGE-YQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSS-E-EEEESSCE-EEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE-E-EEEECCCe-EEcCEEEEcCCccH
Confidence            3445666777889999999999999865443 3 56777774 99999999999754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.01  E-value=6.7e-06  Score=84.03  Aligned_cols=98  Identities=12%  Similarity=0.149  Sum_probs=70.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+..|..|++.|.   +|+++++....+    .+.           .++           ...+.+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~l~----~~d-----------~~~-----------~~~l~~~  234 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGL---DTTVMMRSIPLR----GFD-----------QQM-----------SSLVTEH  234 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSST----TSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEcCcccc----cCC-----------HHH-----------HHHHHHH
Confidence            34689999999999999999999987   899998753211    000           000           1234566


Q ss_pred             HHHcCcEEEeCCcEEEEecC-C--CEEEECC---Cc--EEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIE-K--QTLITNS---GK--LLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~-~--~~v~~~~---g~--~i~~d~lvlAtG~~~~~  185 (497)
                      +++.||++++++.+..+... .  ..+.+.+   |+  ++.+|.||+|+|..|..
T Consensus       235 l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~  289 (488)
T 3dgz_A          235 MESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET  289 (488)
T ss_dssp             HHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESC
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCccc
Confidence            78899999999888888652 2  2455443   44  47899999999987753

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.00  E-value=2e-05  Score=81.86  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=75.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-------------------------------------hhc----
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------QRL----  255 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------------------------------~~~----  255 (497)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+...                                     ...    
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            479999999999999999999999999999753210                                     000    


Q ss_pred             ---------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe--CCC-cEEEcCEEEEeccCcC
Q 010917          256 ---------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG-STIDADTIVIGIGAKP  316 (497)
Q Consensus       256 ---------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~--~~g-~~i~~D~vv~a~G~~p  316 (497)
                                     + ...+...+.+.+++.|++++.+++|++++.++++.  .+++  .+| +++.+|+||.|.|...
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                           0 12355667777788899999999999998765543  3444  778 7899999999999864

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.99  E-value=6.9e-05  Score=77.45  Aligned_cols=55  Identities=16%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+.+.+++.|++++.+ +|++++..+++.+..|.+.+|+++.+|.||.|+|....
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            44556667789999999 89999876566666788889988999999999998765

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.99  E-value=4.5e-05  Score=72.65  Aligned_cols=101  Identities=21%  Similarity=0.226  Sum_probs=73.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcchhhc-------------------------------------cC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-------------------------------------FT  257 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~~-------------------------------------~~  257 (497)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++.+.+....                                     ..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            3799999999999999999998  99999999865432100                                     01


Q ss_pred             HHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCC--C-C--cEEEEEeC--------------CCcEEEc------------
Q 010917          258 PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGS--D-G--RVAAVKLE--------------DGSTIDA------------  305 (497)
Q Consensus       258 ~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~--~-~--~v~~v~~~--------------~g~~i~~------------  305 (497)
                      .++...+.+.+.+. ||+++.++.++++...+  + +  ++.++...              ++.++.+            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            23445566666664 99999999999997653  3 4  77777652              3457999            


Q ss_pred             ---CEEEEeccCcCC
Q 010917          306 ---DTIVIGIGAKPT  317 (497)
Q Consensus       306 ---D~vv~a~G~~p~  317 (497)
                         |.||.|+|....
T Consensus       226 ~~~~~VV~ATG~~~~  240 (326)
T 2gjc_A          226 QKHGVILSTTGHDGP  240 (326)
T ss_dssp             TTCCEEEECCCCC--
T ss_pred             ccCCEEEECcCCCch
Confidence               999999998754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.99  E-value=4e-06  Score=84.62  Aligned_cols=90  Identities=14%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-------hh-ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.....+.+++.||++++++.+..   
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  197 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR---  197 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc---
Confidence            46789999999999999999999999999999987641       11 13556777778889999999999986520   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                             .+.++++ .+.+|.||+|+|..
T Consensus       198 -------~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          198 -------DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             -------TBCHHHH-HSSCSEEEECCCCC
T ss_pred             -------EEEhhHh-HhhCCEEEEecCCC
Confidence                   1222332 25799999999986

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.98  E-value=1.7e-05  Score=80.55  Aligned_cols=98  Identities=23%  Similarity=0.291  Sum_probs=71.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc------------------------------CH-H------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF------------------------------TP-S------  259 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~------------------------------~~-~------  259 (497)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.....                              +- .      
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            3699999999999999999999999999997765421100                              00 0      


Q ss_pred             ----HH--HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeccCcCCCc
Q 010917          260 ----LA--QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVS  319 (497)
Q Consensus       260 ----~~--~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vv~a~G~~p~~~  319 (497)
                          +.  ..+.+.+++.||+++.+ ++..++.   +. ..+.+.+|++  +.+|.+|+|+|.+|...
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~---~~-~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP---TH-VIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET---TE-EEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             hheeccccchHHHHHHhCCCEEEEe-EEEEecC---Ce-EEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                01  33445556789999888 5777652   22 3577788888  99999999999988654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.97  E-value=3.1e-05  Score=77.04  Aligned_cols=100  Identities=20%  Similarity=0.296  Sum_probs=74.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------  254 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------------  254 (497)
                      ...+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...                                        
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            3568999999999999999999999999999987532100                                        


Q ss_pred             -----cc-----------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEec
Q 010917          255 -----LF-----------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  312 (497)
Q Consensus       255 -----~~-----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~  312 (497)
                           .+                 ...+.+.+.+.+.+  ++++++++|++++..++ .+ .+++.+|+++.+|.||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD-GV-TVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT-EE-EEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC-cE-EEEEcCCCEEeeCEEEECC
Confidence                 00                 01233444444444  88999999999987543 33 5788999999999999999


Q ss_pred             cCcCCC
Q 010917          313 GAKPTV  318 (497)
Q Consensus       313 G~~p~~  318 (497)
                      |.....
T Consensus       178 G~~S~v  183 (407)
T 3rp8_A          178 GSHSAL  183 (407)
T ss_dssp             CTTCSS
T ss_pred             CcChHH
Confidence            987543

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.97  E-value=3.3e-05  Score=79.88  Aligned_cols=99  Identities=17%  Similarity=0.203  Sum_probs=75.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  252 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------------------------------  252 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            479999999999999999999999999999874220                                            


Q ss_pred             -------h----h-----------------cc-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC---cEEEEEeCCC
Q 010917          253 -------Q----R-----------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDG  300 (497)
Q Consensus       253 -------~----~-----------------~~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~---~v~~v~~~~g  300 (497)
                             .    .                 .+ ...+...+.+.+++.|+++++++++++++.++++   .+ .+.+.++
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v-~v~~~~~  164 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGV-TARLAGP  164 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEE-EEEEEET
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccE-EEEEEcC
Confidence                   0    0                 00 1235566777888899999999999999876442   33 4555555


Q ss_pred             ---cEEEcCEEEEeccCcC
Q 010917          301 ---STIDADTIVIGIGAKP  316 (497)
Q Consensus       301 ---~~i~~D~vv~a~G~~p  316 (497)
                         .++.+|+||.|.|...
T Consensus       165 ~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          165 DGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             TEEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCCcc
Confidence               6899999999999753

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.93  E-value=3.8e-05  Score=76.13  Aligned_cols=101  Identities=17%  Similarity=0.299  Sum_probs=71.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----cc---C---HHH------------------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LF---T---PSL------------------------  260 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----~~---~---~~~------------------------  260 (497)
                      ...+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..+    .+   .   ...                        
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            3468999999999999999999999999999987543210    00   0   000                        


Q ss_pred             ----------------------HHHHHHHHHHC--CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          261 ----------------------AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       261 ----------------------~~~~~~~l~~~--GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                                            ...+.+.|.+.  +++++++++|++++..++ .+ .+++.+|+++.+|.||.|.|...
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKK-KW-TLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSS-SE-EEEETTSCCEEESEEEECSCTTC
T ss_pred             CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCC-EE-EEEECCCcEEecCEEEECCCcch
Confidence                                  01122222221  357888999999986543 33 57888998899999999999876


Q ss_pred             C
Q 010917          317 T  317 (497)
Q Consensus       317 ~  317 (497)
                      .
T Consensus       183 ~  183 (398)
T 2xdo_A          183 K  183 (398)
T ss_dssp             S
T ss_pred             h
Confidence            4

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.92  E-value=9e-06  Score=83.15  Aligned_cols=99  Identities=21%  Similarity=0.305  Sum_probs=70.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCC-----------CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGM-----------ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS  129 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~-----------~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  129 (497)
                      .+++|||||+.|+..|..|++.+.           +..+|+|+|..+...   |.+..           .+         
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il---~~~~~-----------~~---------  274 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL---NMFEK-----------KL---------  274 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS---TTSCH-----------HH---------
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc---cCCCH-----------HH---------
Confidence            479999999999999998876431           124799999986531   11110           01         


Q ss_pred             CCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEE--ECCC----cEEEeccEEeccCCCCC
Q 010917          130 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLI--TNSG----KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~g----~~i~~d~lvlAtG~~~~  184 (497)
                        .....+.+++.||++++++.|.+++.+...+.  ..+|    +++++|.+|+|+|..|.
T Consensus       275 --~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          275 --SSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             --HHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             --HHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence              12346778899999999999999987654433  3455    36999999999997764

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.90  E-value=7.5e-05  Score=76.60  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-c--EEEcC-EEEEeccCcC
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDAD-TIVIGIGAKP  316 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-~--~i~~D-~vv~a~G~~p  316 (497)
                      .+...+.+.+++.||++++++.++++..++++++.+|...++ +  ++.+| .||+|+|--.
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            455566677788999999999999998765678877766543 2  58996 9999999654

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.89  E-value=5.2e-05  Score=81.26  Aligned_cols=37  Identities=24%  Similarity=0.472  Sum_probs=33.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...+||+|||||++|++||..|++.|+   +|+|+|+.+.
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~  370 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGI---KVTVLEAKDR  370 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEecccc
Confidence            346899999999999999999999998   8999999654

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.88  E-value=1.8e-05  Score=80.85  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc------------cCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------FTPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      ..+|+|||+|+.|+.+|..|++. .+|+++++.+.+....            ...++...+.+.+ +.|++++.++.+.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~  185 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALG  185 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECC
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence            35799999999999999999999 9999999886542110            0122333333333 56999999999988


Q ss_pred             EEeCCCCcEEEEEeCCCc--EEEcCEEEEeccCcCCCc
Q 010917          284 LEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~--~i~~D~vv~a~G~~p~~~  319 (497)
                      +...+ ..+......+++  ++.+|.+|+|+|..|...
T Consensus       186 i~~~~-~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          186 VFDKG-EYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             CEECS-SSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EEcCC-cEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            87543 333223334554  689999999999988643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.87  E-value=1.8e-05  Score=81.38  Aligned_cols=97  Identities=15%  Similarity=0.245  Sum_probs=67.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+..|..|++.|.   +|+++++....+    .+.           .++           .....+.+
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~l~----~~d-----------~~~-----------~~~~~~~l  260 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILLR----GFD-----------QDM-----------ANKIGEHM  260 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSST----TSC-----------HHH-----------HHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecccccc----cCC-----------HHH-----------HHHHHHHH
Confidence            4679999999999999999999987   899998742210    000           000           12345667


Q ss_pred             HHcCcEEEeCCcEEEEecCC----C--EEE--ECCC-c--EEEeccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK----Q--TLI--TNSG-K--LLKYGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~----~--~v~--~~~g-~--~i~~d~lvlAtG~~~~~  185 (497)
                      ++.||++++++.+..+....    .  .+.  ..++ +  ++.+|.|++|+|..|..
T Consensus       261 ~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~  317 (519)
T 3qfa_A          261 EEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT  317 (519)
T ss_dssp             HHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESC
T ss_pred             HHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccC
Confidence            88999999987766664321    2  232  2344 2  56899999999988753

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.86  E-value=3.7e-06  Score=89.08  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=32.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~-----~g~~~~~V~lie~~~~   97 (497)
                      .+||+||||||+||++|..|++     .|+   +|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi---~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCC---CEEEEeCCCC
Confidence            4799999999999999999999     888   8999999764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.83  E-value=0.00012  Score=74.89  Aligned_cols=100  Identities=18%  Similarity=0.263  Sum_probs=77.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh----------------------hc-----------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------RL-----------------  255 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------~~-----------------  255 (497)
                      ...+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                      ..                 
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            446799999999999999999999999999997632110                      00                 


Q ss_pred             -------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc---EEEcCEEEEeccCcC
Q 010917          256 -------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP  316 (497)
Q Consensus       256 -------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~---~i~~D~vv~a~G~~p  316 (497)
                                   + ...+...+.+.+++.|++++.++++++++.++++ + .+++.+++   ++.+|+||.|.|...
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-V-VVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-E-EEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCcEEEEeCEEEEccCccc
Confidence                         0 1235566777788889999999999999876444 3 36666664   799999999999864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.82  E-value=1.6e-05  Score=84.68  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=73.4

Q ss_pred             CCCcEEEEc--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           59 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        59 ~~~~VvIIG--gG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      ..++|+|||  ||..|+.+|..|++.|.   +|+++++.+...-.        ..+     ...           ...+.
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~---~Vtlv~~~~~l~~~--------~~~-----~~~-----------~~~l~  574 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKGY---EVSIVTPGAQVSSW--------TNN-----TFE-----------VNRIQ  574 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTTC---EEEEEESSSSTTGG--------GGG-----GTC-----------HHHHH
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCCC---eeEEEecccccccc--------ccc-----chh-----------HHHHH
Confidence            456899999  99999999999999987   89999987642100        000     000           12345


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEE---CCCcEEEeccEEeccCCCCC
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLIT---NSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~---~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +.+++.||+++.+++|.+++.+...+..   .+++++.+|.||+|+|..|.
T Consensus       575 ~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          575 RRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             HHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            6778899999999999999876655553   24567999999999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.81  E-value=3e-05  Score=81.28  Aligned_cols=97  Identities=11%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++....    +.+..           .+           .....+.+
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~~~~~l  336 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGG---DVTVMVRSILL----RGFDQ-----------QM-----------AEKVGDYM  336 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECCcCc----CcCCH-----------HH-----------HHHHHHHH
Confidence            4689999999999999999999987   79999976211    00000           00           12234567


Q ss_pred             HHcCcEEEeCCcEEEEec-------C--CCE--EE--ECCCcEEE--eccEEeccCCCCCc
Q 010917          140 KEKGIEMIYQDPVTSIDI-------E--KQT--LI--TNSGKLLK--YGSLIVATGCTASR  185 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~-------~--~~~--v~--~~~g~~i~--~d~lvlAtG~~~~~  185 (497)
                      ++.||++++++.+..+..       .  ...  +.  ..+|+++.  +|.||+|+|..|..
T Consensus       337 ~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~  397 (598)
T 2x8g_A          337 ENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL  397 (598)
T ss_dssp             HHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECG
T ss_pred             HhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcccc
Confidence            788999999877766632       1  122  22  35676555  99999999988763

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.81  E-value=6.9e-05  Score=74.58  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=72.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhh----------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR----------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~----------------------------------------  254 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+ |+|+++.+.+.+.                                        
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            35799999999999999999999999 9999987542100                                        


Q ss_pred             --------------------ccCHHHHHHHHHHHHH-CC-cEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCE
Q 010917          255 --------------------LFTPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADT  307 (497)
Q Consensus       255 --------------------~~~~~~~~~~~~~l~~-~G-V~i~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~  307 (497)
                                          .....+.+.+.+.+.+ .| ++++++++|++++. +++ + .+.+.+   |  +++.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v-~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-R-VLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-E-EEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-c-EEEEecCCCCCceEEecCE
Confidence                                0001344555666655 35 68999999999986 444 3 355544   6  5799999


Q ss_pred             EEEeccCcCC
Q 010917          308 IVIGIGAKPT  317 (497)
Q Consensus       308 vv~a~G~~p~  317 (497)
                      ||.|.|....
T Consensus       161 vV~AdG~~S~  170 (410)
T 3c96_A          161 LVGADGIHSA  170 (410)
T ss_dssp             EEECCCTTCH
T ss_pred             EEECCCccch
Confidence            9999998653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.79  E-value=1.4e-05  Score=80.25  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ++++|+||||||+|+++|..|+++|+   +|+|||+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~---~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDV---DVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC---eEEEEcCCC
Confidence            45799999999999999999999998   899999976

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.77  E-value=0.00011  Score=81.20  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc-----------CHHHHHHHHHHHHHC-CcEEEcCCeEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF-----------TPSLAQRYEQLYQQN-GVKFVKGASIKN  283 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~-----------~~~~~~~~~~~l~~~-GV~i~~~~~v~~  283 (497)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.....           ..++...+.+.+.+. +|+++.+++|.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            45799999999999999999999999999998765421111           123444555556664 999999999988


Q ss_pred             EEeCCCCcEEEEEe---------------CCCcEEEcCEEEEeccCcCCCc
Q 010917          284 LEAGSDGRVAAVKL---------------EDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       284 i~~~~~~~v~~v~~---------------~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                      +..  ++.+..+..               .++.++.+|.||+|+|..|...
T Consensus       208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~  256 (965)
T 2gag_A          208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPI  256 (965)
T ss_dssp             EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCC
T ss_pred             eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCC
Confidence            873  233222211               1123689999999999987643

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.77  E-value=0.00018  Score=74.07  Aligned_cols=55  Identities=16%  Similarity=0.266  Sum_probs=44.3

Q ss_pred             HHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          262 QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       262 ~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+.+.+++ .|++++.+ +|++++..+++.+..|.+.+|+++.+|.||.|.|....
T Consensus       179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            344555667 89999999 69999876566666788888878999999999999764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.77  E-value=0.00014  Score=74.40  Aligned_cols=101  Identities=20%  Similarity=0.218  Sum_probs=76.9

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh----------------------hc----------------
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------RL----------------  255 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------~~----------------  255 (497)
                      ....+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                      ..                
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   88 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI   88 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence            3456799999999999999999999999999997632100                      00                


Q ss_pred             --------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc---EEEcCEEEEeccCcC
Q 010917          256 --------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP  316 (497)
Q Consensus       256 --------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~---~i~~D~vv~a~G~~p  316 (497)
                                    + ...+.+.+.+.+++.|++++.++++++++.+++ .+ .+++.+++   ++.+|+||.|.|...
T Consensus        89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             ccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCcch
Confidence                          0 123556677777888999999999999987544 33 36666664   799999999999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.76  E-value=0.00016  Score=74.20  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=45.5

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+.+.+++.|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|.|....
T Consensus       177 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          177 RYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            34556667789999999 99999876567777888899989999999999998754

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.76  E-value=0.00017  Score=71.24  Aligned_cols=59  Identities=24%  Similarity=0.374  Sum_probs=42.5

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcC
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                      .+.+.+++.|++++.++.|++++.++ +.+ .+.+.++ ++.+|.||+|+|.... .++..++
T Consensus       158 ~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~v~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g  216 (397)
T 2oln_A          158 ALFTLAQAAGATLRAGETVTELVPDA-DGV-SVTTDRG-TYRAGKVVLACGPYTN-DLLEPLG  216 (397)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEESSC-EEEEEEEEECCGGGHH-HHHGGGT
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEcC-CeE-EEEECCC-EEEcCEEEEcCCcChH-HHhhhcC
Confidence            44555678899999999999998653 333 3666555 7999999999998643 3444444

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.75  E-value=2.2e-05  Score=76.77  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=33.5

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.+++||+|||||++|+++|++|+++|+   +|+|+|++.
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~---~V~vle~~~   39 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL   39 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCC---EEEEEeccC
Confidence            3456899999999999999999999987   899999975

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.74  E-value=1.2e-05  Score=81.61  Aligned_cols=40  Identities=25%  Similarity=0.505  Sum_probs=34.1

Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          273 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       273 V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      +++++++.|++|+..+++ + .|++.+|+++.+|.||+|++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSC-Y-SLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSS-E-EEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCe-E-EEEECCCCEEECCEEEECCCH
Confidence            799999999999876444 3 588899988999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.72  E-value=6.1e-05  Score=74.88  Aligned_cols=63  Identities=24%  Similarity=0.254  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEE---------EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchh-hcCC
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIK---------NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGL  326 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~---------~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~-~~gl  326 (497)
                      +...+.+.+++.|++++.+++|+         ++... ++.+ .|.+.+| ++.+|.||+|+|.... .++. .+++
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s~-~l~~~~~g~  246 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAGP-ALVEQGLGL  246 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGHH-HHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccHH-HHHHHhcCC
Confidence            44556677788999999999998         87643 3444 5666666 7999999999998643 3444 4443

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.72  E-value=0.00018  Score=78.34  Aligned_cols=55  Identities=27%  Similarity=0.378  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      +...+.+.+++.|++++.++.|++++.. ++.+..|.+.+| ++.+|.||+|+|...
T Consensus       153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          153 AVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCc-EEECCEEEECCccch
Confidence            3445666778899999999999999864 455666778777 799999999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.70  E-value=3.6e-05  Score=75.20  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=35.1

Q ss_pred             cCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC-CCC
Q 010917           56 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-AYA   98 (497)
Q Consensus        56 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~-~~~   98 (497)
                      ++...++|+|||||++||+||+.|++.|+   +|+|+|++ +..
T Consensus        40 ~~~~~~~V~IIGAGiaGL~aA~~L~~~G~---~V~VlE~~~~~v   80 (376)
T 2e1m_A           40 PPGPPKRILIVGAGIAGLVAGDLLTRAGH---DVTILEANANRV   80 (376)
T ss_dssp             SCCSCCEEEEECCBHHHHHHHHHHHHTSC---EEEEECSCSSCC
T ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHCCC---cEEEEecccccc
Confidence            34557899999999999999999999998   89999998 543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.70  E-value=1.7e-05  Score=88.10  Aligned_cols=93  Identities=20%  Similarity=0.267  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      +++|+|||+|+.|+.+|..|++.|. +|+++++.+.+...        .+..+...+..+.+++.||+++.++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            5789999999999999999999999 79999988654210        13445666667788999999999976631   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccC-cCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  317 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~-~p~  317 (497)
                         .   .+.+.+++++.+|.||+|+|. +|.
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCC
Confidence               1   133445556789999999998 575

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.70  E-value=1.4e-05  Score=80.86  Aligned_cols=91  Identities=14%  Similarity=0.194  Sum_probs=68.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcch--------hhc-cCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL--------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      ..++|+|||+|+.|+.+|..|++.|  .+|+++++.+.+.        +.. ...++...+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3578999999999999999999998  8999999887654        111 123456667788888999999987652 


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p  316 (497)
                            .   .|.+.+ .++.+|.||+|+|..|
T Consensus        84 ------~---~V~~~~-~~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R---DVTVQE-LQDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T---TBCHHH-HHHHSSEEEECCCCCE
T ss_pred             ------e---EEEecc-ceEEcCEEEEecCcCC
Confidence                  1   133333 2478999999999985

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.66  E-value=6.4e-05  Score=79.84  Aligned_cols=47  Identities=19%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             HhHHHHcCcEEEeCCcEEEEecCCCEEEE-CCC--cEEEeccEEeccCCCCC
Q 010917          136 PEWYKEKGIEMIYQDPVTSIDIEKQTLIT-NSG--KLLKYGSLIVATGCTAS  184 (497)
Q Consensus       136 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~g--~~i~~d~lvlAtG~~~~  184 (497)
                      .+.+++.||++++++++..++.+.  +.+ .+|  +++.+|.||+|+|..|.
T Consensus       580 ~~~l~~~GV~v~~~~~v~~i~~~~--v~~~~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          580 RTTLLSRGVKMIPGVSYQKIDDDG--LHVVINGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTE--EEEEETTEEEEECCSEEEECCCEEEC
T ss_pred             HHHHHhcCCEEEeCcEEEEEeCCe--EEEecCCeEEEEeCCEEEECCCcccc
Confidence            456788899999999999998543  444 566  57999999999998764

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.65  E-value=4.4e-05  Score=76.34  Aligned_cols=53  Identities=17%  Similarity=0.274  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      +.....+..++.+.++++++.|++|+.. ++.+ .|.+.+|+ +.+|.||+|++..
T Consensus       205 ~~~l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v-~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          205 TQAMFEHLNATLEHPAERNVDITRITRE-DGKV-HIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             HHHHHHHHHHHSSSCCBCSCCEEEEECC-TTCE-EEEESSCE-EEESEEEECSCHH
T ss_pred             HHHHHHHHHHhhcceEEcCCEEEEEEEE-CCEE-EEEECCCe-EEcCEEEECCCHH
Confidence            4444455555666788999999999865 4444 37787775 8999999999864

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.63  E-value=3.8e-05  Score=78.08  Aligned_cols=54  Identities=30%  Similarity=0.467  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      .+.+.+.+.+++.|++|++++.|++|+..+++. ..|.+ ++.++.+|.||+|++.
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~-~~v~~-~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGR-WKVSL-RDSSLEADHVISAIPA  288 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGC-EEEEC-SSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCce-EEEEE-CCeEEEcCEEEECCCH
Confidence            567788888999999999999999998654432 34555 5557999999999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.63  E-value=1.4e-05  Score=80.60  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHh-C------CCcEEEEecCCcchhh---------ccCHHHHHHHHHHHHHCCcEEEcCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVG-W------KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGA  279 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~-~------g~~Vtlv~~~~~~~~~---------~~~~~~~~~~~~~l~~~GV~i~~~~  279 (497)
                      .++|+|||+|+.|+.+|..|.+ .      +.+|+++++.+.+...         ....++...+.+.+++.||+++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999999 7      8999999998654321         1123456677777888899999885


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          280 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       280 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      .+     +  .   .|.+.++ ++.+|.||+|+|..
T Consensus        83 ~v-----~--~---~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV-----G--E---HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB-----T--T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EE-----C--C---EEEECCC-eEeCCEEEEeeCCC
Confidence            43     1  1   1344444 47899999999997

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.62  E-value=5e-05  Score=76.71  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+.+.+.+.+++.|+++++++.|++|.... ++++..|.+ +|+++.||.||+++|..+.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            4677888888999999999999999998642 566666776 5788999999999998764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.61  E-value=3e-05  Score=79.75  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAP   99 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~~~   99 (497)
                      ..+||+|||||+|||+||..|++.| +   +|+|+|+++...
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~---~V~VlEa~~riG   45 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQ---DCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCC---SEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCC---CEEEEeCCCCCC
Confidence            3479999999999999999999998 7   899999987643

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.60  E-value=5.5e-05  Score=75.02  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=34.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP   99 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~   99 (497)
                      .++||+|||||++||+||..|++. |+   +|+|+|+++...
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~---~v~v~E~~~~~G   44 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDK---RVLVLERRPHIG   44 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCC---CEEEECSSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCC---CEEEEeCCCCCC
Confidence            368999999999999999999999 87   899999997653

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.59  E-value=5.6e-05  Score=77.15  Aligned_cols=38  Identities=18%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      +..+||+|||||+|||+||+.|++.|+   +|+|+|+.+..
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~---~v~v~E~~~~~   46 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGY---KVTVLEARTRP   46 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCC
Confidence            446799999999999999999999997   89999998764

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.59  E-value=3.2e-05  Score=78.11  Aligned_cols=36  Identities=22%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ++||+|||||++||+||..|++.|+   +|+|+|+++..
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~   40 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGL---SVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---cEEEEECCCCC
Confidence            4799999999999999999999988   79999998764

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.56  E-value=6.6e-05  Score=73.93  Aligned_cols=39  Identities=26%  Similarity=0.441  Sum_probs=34.6

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ....+||+|||||++|++||..|++.|+   +|+|+|+.+..
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~   64 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQ---RVLIVDRRPHI   64 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCC---ceEEEeccCCC
Confidence            3456899999999999999999999987   89999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.54  E-value=5.5e-05  Score=81.03  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=70.1

Q ss_pred             CCCcEEEEc--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           59 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        59 ~~~~VvIIG--gG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      ..++|+|||  ||..|+.+|..|++.|.   +|+++++.+ ..-.       ...+..                 .....
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~---~Vtlv~~~~-l~~~-------~~~~~~-----------------~~~~~  578 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVH-LANY-------MHFTLE-----------------YPNMM  578 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSC-TTHH-------HHHTTC-----------------HHHHH
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCC---EEEEEeccc-cccc-------cccccc-----------------HHHHH
Confidence            357999999  99999999999999987   899999876 2100       000000                 01234


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEE--CCC-cE------------------EEeccEEeccCCCCC
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLIT--NSG-KL------------------LKYGSLIVATGCTAS  184 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~g-~~------------------i~~d~lvlAtG~~~~  184 (497)
                      +.+++.||+++.++.+.+++.+...+..  .++ +.                  +.+|.||+|+|..|.
T Consensus       579 ~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          579 RRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             HHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             HHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            5678889999999999999865433332  232 32                  899999999998765

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.53  E-value=0.00053  Score=70.06  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCcCC
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPT  317 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~p~  317 (497)
                      +...+.+.+++.|++++.+++|+++..++  .+..|.+   .+|+  ++.+|.||.|+|...+
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            34455666788999999999999998643  4456666   3565  7999999999998653

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.51  E-value=0.00041  Score=70.27  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=70.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------------h------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------R------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------~------------------------------  254 (497)
                      .|+|||+|..|+-+|..|++.|.+|+++++...-..             .                              
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            489999999999999999999999999987610000             0                              


Q ss_pred             -----------------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-
Q 010917          255 -----------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-  298 (497)
Q Consensus       255 -----------------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-  298 (497)
                                                         .....+...+.+.+++.||+++.++.+ ++..+ ++++.++... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEe
Confidence                                               000123445556667789999999999 98754 5666566543 


Q ss_pred             CCcEEEcCEEEEeccCcCC
Q 010917          299 DGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       299 ~g~~i~~D~vv~a~G~~p~  317 (497)
                      ++.++.+|.||+|+|..+.
T Consensus       159 ~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             TEEECCCSEEEECCCCCGG
T ss_pred             CCCeEEeeeEEECCCCCcc
Confidence            2335789999999998764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.49  E-value=7.4e-05  Score=73.58  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~   98 (497)
                      .||+|||||++|+++|..|++.  |+   +|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~---~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLW---AIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS---EEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCC---CEEEEECCCCC
Confidence            3899999999999999999999  87   89999998654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.49  E-value=0.00098  Score=69.40  Aligned_cols=52  Identities=21%  Similarity=0.222  Sum_probs=39.8

Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~  315 (497)
                      +.+.+++.||+++.++.++++..++++++.++..   .+|+  ++.++.||+|+|..
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            4455567899999999999998643567766654   4565  68999999999963

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.47  E-value=7.7e-05  Score=76.86  Aligned_cols=44  Identities=23%  Similarity=0.244  Sum_probs=34.6

Q ss_pred             HH-cCcEEEeCCcEEEEecCC--C--EEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KE-KGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~-~~v~~~~~~~v~~i~~~~--~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      .+ .|++++.+ +|++++.+.  .  .+.+++|.++.+|.||.|+|....
T Consensus       186 ~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          186 TQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            45 79999998 699987542  2  466777777999999999998643

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.46  E-value=8.4e-05  Score=75.50  Aligned_cols=38  Identities=24%  Similarity=0.183  Sum_probs=33.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ++||+|||||++||+||+.|+++|. +.+|+|+|+++..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~-~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFP-DLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCT-TSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence            5799999999999999999999992 2389999997654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.46  E-value=8.3e-05  Score=75.58  Aligned_cols=38  Identities=18%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ...+||+|||||++||+||..|+++|+   +|+|+|+++..
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~---~v~v~E~~~~~   51 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGT---DAVLLESSARL   51 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTC---CEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCC
Confidence            346799999999999999999999998   89999998754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.43  E-value=0.00012  Score=70.86  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ++||+|||||+||+.||..|++.|+   +|+|+|+.+.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~---~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGV---PVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            3699999999999999999999998   8999998763

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.41  E-value=4e-05  Score=82.80  Aligned_cols=38  Identities=21%  Similarity=0.389  Sum_probs=34.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ...++|+|||||++||+||..|+++|+   +|+|+|+.+..
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~---~v~v~E~~~~~  313 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRV  313 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCcC
Confidence            456899999999999999999999998   89999998754

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.40  E-value=0.00011  Score=75.22  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..+||+|||||++||+||..|+++|+   +|+|+|+.+..
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~   48 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKA   48 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEeCCCC
Confidence            45899999999999999999999998   89999998765

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.40  E-value=8.3e-05  Score=72.26  Aligned_cols=36  Identities=14%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCC---CCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~---~~~~V~lie~~~   96 (497)
                      .||+|||||++|+++|++|+++|.   +..+|+|+|++.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            389999999999999999999971   023899999985

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.39  E-value=0.00013  Score=74.46  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=34.6

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ...+++|+|||||++||+||..|+++|+   +|+|+|+.+..
T Consensus        30 ~~~~~~v~IiGaG~~Gl~aA~~l~~~g~---~v~vlE~~~~~   68 (498)
T 2iid_A           30 TSNPKHVVIVGAGMAGLSAAYVLAGAGH---QVTVLEASERP   68 (498)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC---EEEEECSSSSS
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCC
Confidence            3446899999999999999999999998   89999998654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.38  E-value=0.00015  Score=73.78  Aligned_cols=38  Identities=21%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~~   98 (497)
                      .++++|+|||||++||+||+.|+++| .   +|+|+|+++..
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~---~v~v~E~~~~~   45 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYK---NWHLYECNDTP   45 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCC---SEEEEESSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCC---CEEEEeCCCCC
Confidence            34589999999999999999999998 4   89999998764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.38  E-value=0.00012  Score=74.65  Aligned_cols=56  Identities=21%  Similarity=0.350  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          258 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       258 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      ..+.+.+.+.+++.| +++++++.|++|+..++ .+ .|++.+|+++.+|.||+|+|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERD-AA-RVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSS-SE-EEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCC-EE-EEEECCCCEEEcCEEEECCCHH
Confidence            356777888888888 99999999999986543 33 5778888889999999999963

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.37  E-value=0.00012  Score=72.08  Aligned_cols=88  Identities=15%  Similarity=0.185  Sum_probs=68.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcc----------------------h-hh-----------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL----------------------L-QR-----------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~----------------------~-~~-----------------  254 (497)
                      .+|+|||+|+.|+.+|..|++.  |.+|+|+++.+.+                      . ..                 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3699999999999999999999  9999999987543                      0 00                 


Q ss_pred             --------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          255 --------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       255 --------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                    ....++.+.+.+.+++.|++++++++|++++..             +++.+|.||.|.|....
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------------CGGGCSEEEECCGGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------------ccccCCEEEECCCCCch
Confidence                          011356677778888889999999998877521             13679999999998653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.36  E-value=0.00079  Score=70.97  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=73.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh-CCCcEEEEecCCcchh------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQ------------------------------------------  253 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~~~------------------------------------------  253 (497)
                      .+|+|||+|+.|+-+|..|++ .|.+|+|+++.+.+..                                          
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            469999999999999999999 9999999997632100                                          


Q ss_pred             --h---------------------ccC-HHHHHHHHHHHHHCCc--EEEcCCeEEEEEeCCC--CcEEEEEeC------C
Q 010917          254 --R---------------------LFT-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSD--GRVAAVKLE------D  299 (497)
Q Consensus       254 --~---------------------~~~-~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~--~~v~~v~~~------~  299 (497)
                        .                     .++ ..+...+.+.+++.|+  +++.++++++++.+++  +....+++.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence              0                     000 2455667778888877  9999999999987542  212234443      4


Q ss_pred             C--cEEEcCEEEEeccCcC
Q 010917          300 G--STIDADTIVIGIGAKP  316 (497)
Q Consensus       300 g--~~i~~D~vv~a~G~~p  316 (497)
                      |  +++.+|.||.|.|...
T Consensus       193 G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCcch
Confidence            5  5799999999999753

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.33  E-value=0.0011  Score=69.31  Aligned_cols=97  Identities=20%  Similarity=0.246  Sum_probs=70.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcchhh-------------------------------cc-------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR-------------------------------LF-------  256 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~-------------------------------~~-------  256 (497)
                      -.|+|||+|..|+-+|..|++.|  .+|+|+++.+.....                               ..       
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            36999999999999999999999  999999976321000                               00       


Q ss_pred             -----------------------------------------------CHHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCC
Q 010917          257 -----------------------------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGS  288 (497)
Q Consensus       257 -----------------------------------------------~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~  288 (497)
                                                                     +..+...+.+.+++.| |+++.++.++++..+ 
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-
Confidence                                                           0123334445556678 999999999999754 


Q ss_pred             CCcEEEEEe---CCCc--EEEcCEEEEeccC
Q 010917          289 DGRVAAVKL---EDGS--TIDADTIVIGIGA  314 (497)
Q Consensus       289 ~~~v~~v~~---~~g~--~i~~D~vv~a~G~  314 (497)
                      ++++.++..   .+|+  ++.++.||+|+|.
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            566655543   5676  6999999999994

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.32  E-value=0.00014  Score=71.21  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=32.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      +||+|||||++|+++|..|++.|+   +|+|+|+++..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~   36 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHI   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCC
Confidence            589999999999999999999987   89999998754

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.31  E-value=0.00017  Score=71.01  Aligned_cols=37  Identities=22%  Similarity=0.444  Sum_probs=33.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      +.+|+|||||++|+++|..|++.|+   +|+|+|+++...
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEEecCCcC
Confidence            3699999999999999999999987   899999987653

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.18  E-value=0.00098  Score=68.64  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      -.|+|||+|..|+-+|..|++ |.+|+|+++.+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            469999999999999999999 999999998753

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.17  E-value=0.0021  Score=66.48  Aligned_cols=95  Identities=19%  Similarity=0.303  Sum_probs=67.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  253 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------------------  253 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                                           
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            4799999999999999999999999999997643210                                           


Q ss_pred             -h-c---c---------------------C-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--c
Q 010917          254 -R-L---F---------------------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--S  301 (497)
Q Consensus       254 -~-~---~---------------------~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g--~  301 (497)
                       . .   +                     + ..+.+.+.+.+++.   +++++++++++.++++ + .+++.+   |  +
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence             0 0   0                     0 12334455555554   8889999999876444 3 244443   6  4


Q ss_pred             EEEcCEEEEeccCcC
Q 010917          302 TIDADTIVIGIGAKP  316 (497)
Q Consensus       302 ~i~~D~vv~a~G~~p  316 (497)
                      ++.+|.||.|.|...
T Consensus       182 ~i~a~~vVgADG~~S  196 (549)
T 2r0c_A          182 AVHARYLVACDGASS  196 (549)
T ss_dssp             EEEEEEEEECCCTTC
T ss_pred             EEEeCEEEECCCCCc
Confidence            799999999999754

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.17  E-value=0.00036  Score=69.93  Aligned_cols=58  Identities=17%  Similarity=0.350  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+.+.+.+.+++.|+++++++.|++|... ++++..+. .+|+++.||.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            467778888888999999999999999864 56665555 47888999999999998764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.15  E-value=0.0032  Score=65.31  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=38.8

Q ss_pred             HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccCcC
Q 010917          264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~~p  316 (497)
                      +.+..++.|++++.+++|+++... ++.+..|.+.   +|+  ++.+|.||.|+|...
T Consensus       194 l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          194 NIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            334456789999999999999865 4566566653   343  799999999999753

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.13  E-value=0.00032  Score=72.88  Aligned_cols=35  Identities=20%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..+||+|||||++|+++|+.|+++|+   +|+|+|+++
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~---~V~LlE~~~   65 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGI---KTGLIEMQD   65 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCC
Confidence            46899999999999999999999998   899999975

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.10  E-value=0.00043  Score=73.30  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=34.8

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ....++|+|||||++|++||..|++.|+   +|+|+|+.+..
T Consensus       104 ~~~~~~v~viG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~  142 (662)
T 2z3y_A          104 TKKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRV  142 (662)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSS
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCCC
Confidence            3456899999999999999999999998   89999998654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.05  E-value=0.00044  Score=69.55  Aligned_cols=58  Identities=16%  Similarity=0.315  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      .++.+.+.+.+++.|+++++++.|++|..++++++.+|.+.+|+++.||.||++.++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            4678888899999999999999999998645778889999999999999999999988

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.00  E-value=0.0037  Score=65.32  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCcC
Q 010917          265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       265 ~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~p  316 (497)
                      .+.+.+.||+++.++.+.++..+ ++++.++..   .+|+  .+.++.||+|+|...
T Consensus       162 ~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          162 YGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            33345578999999999998753 567666655   4665  689999999999643

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.98  E-value=0.00099  Score=68.15  Aligned_cols=49  Identities=18%  Similarity=0.332  Sum_probs=37.9

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      +.+.+.+++.|+++++++.|++|..+ ++   .+++.+|+++.+|.||+++..
T Consensus       226 ~~l~~~l~~~g~~i~~~~~V~~I~~~-~~---~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          226 IAVANTLPKEKTRFGEKGKVTKVNAN-NK---TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHTSCGGGEEESGGGCEEEEETT-TT---EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHhcCeeeecceEEEEEEcc-CC---EEEEcCCCEEECCEEEECCCH
Confidence            33444456678999999999999853 33   367899999999999998754

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.96  E-value=0.00052  Score=72.33  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHH---H-cCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFV---E-HGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~---~-~g~~~~~V~lie~~~~   97 (497)
                      ..+||||||||+|||+||..|+   + .|.   +|+||||.+.
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~---~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGL---KVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTC---CEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCC---eEEEEeCcCC
Confidence            3579999999999999999999   5 787   8999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.85  E-value=0.0058  Score=61.50  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC------CcEEEEecCCcc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPENHL  251 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g------~~Vtlv~~~~~~  251 (497)
                      ++|+|||+|.+|+-+|..|++.|      .+|+|+++.+++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            57999999999999999999999      899999987654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.85  E-value=0.0069  Score=63.72  Aligned_cols=50  Identities=18%  Similarity=0.176  Sum_probs=37.3

Q ss_pred             HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917          265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       265 ~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~  315 (497)
                      .+.+.+.||+++.++.+.++... ++++.++..   .+|+  .+.++.||+|+|-.
T Consensus       165 ~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          165 ANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            34445678999999999998753 566666654   4665  58999999999853

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.78  E-value=0.0011  Score=67.02  Aligned_cols=41  Identities=20%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      |.++++++.|++|+..++ .+ .|++.+|+++.+|.||+|++.
T Consensus       228 ~~~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSPG-GV-TVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             CTTEESSCCEEEEEECSS-CE-EEEETTSCEEEESEEEECSCH
T ss_pred             ccEEEcCCEEEEEEEcCC-cE-EEEECCCCEEEcCEEEEecCH
Confidence            678999999999987544 44 488899989999999999875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.78  E-value=0.00055  Score=72.09  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcC--------CCCCcEEEEcCCC-CC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHG--------MADGRLCIVSKEA-YA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g--------~~~~~V~lie~~~-~~   98 (497)
                      .++|+|||||++||+||+.|++.|        +   +|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~---~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGI---DVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEE---EEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCc---eEEEEeccCccc
Confidence            478999999999999999999988        5   899999987 54

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.74  E-value=0.0078  Score=64.48  Aligned_cols=42  Identities=17%  Similarity=0.365  Sum_probs=34.9

Q ss_pred             CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       271 ~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      .|++|++++.|++|+..+++ + .|++.+|+++.+|.||+|+..
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~-v-~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDE-V-QVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSS-E-EEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCE-E-EEEECCCcEEEcCEEEECCCH
Confidence            47899999999999865444 3 578889989999999999864

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.73  E-value=0.0011  Score=68.55  Aligned_cols=64  Identities=16%  Similarity=0.272  Sum_probs=46.9

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EE---EcCEEEEeccCcCCCcchhhcCCc
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TI---DADTIVIGIGAKPTVSPFERVGLN  327 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i---~~D~vv~a~G~~p~~~~~~~~gl~  327 (497)
                      ++....++.|+++++++.|++|..+ ++++.+|.+.+   |+  ++   .++.||+|+|.-....++..+|+.
T Consensus       201 ~l~~~~~~~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig  272 (546)
T 1kdg_A          201 YLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  272 (546)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             HHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence            4444444469999999999999864 56788888865   53  34   889999999986555666666653

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.72  E-value=0.0059  Score=64.48  Aligned_cols=32  Identities=28%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh-----CCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVG-----WKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~-----~g~~Vtlv~~~  248 (497)
                      ..|+|||+|+.|+-+|..|++     .|.+|+|+++.
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            369999999999999999999     99999999976

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.66  E-value=0.0036  Score=59.91  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=53.6

Q ss_pred             CCcEEEEcCchHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           60 NREFVIVGGGNAAGY-AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~-aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      +++|.|||.|.+|++ +|..|.++|+   +|++.|.....+                                   ..+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~---~V~~~D~~~~~~-----------------------------------~~~~   45 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF---EVSGCDAKMYPP-----------------------------------MSTQ   45 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC---EEEEEESSCCTT-----------------------------------HHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC---EEEEEcCCCCcH-----------------------------------HHHH
Confidence            479999999999997 7889999998   899999864310                                   1345


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +++.|+++..+..     ++.    +..   ..+|.||+.+|..+.
T Consensus        46 L~~~gi~v~~g~~-----~~~----l~~---~~~d~vV~Spgi~~~   79 (326)
T 3eag_A           46 LEALGIDVYEGFD-----AAQ----LDE---FKADVYVIGNVAKRG   79 (326)
T ss_dssp             HHHTTCEEEESCC-----GGG----GGS---CCCSEEEECTTCCTT
T ss_pred             HHhCCCEEECCCC-----HHH----cCC---CCCCEEEECCCcCCC
Confidence            6778999887632     111    000   147999999997654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.65  E-value=0.0038  Score=62.72  Aligned_cols=133  Identities=13%  Similarity=0.171  Sum_probs=78.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||.|.+|+++|+.|+++|+   +|++.|..+..   .                              ....+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~---~V~~~D~~~~~---~------------------------------~~~~~~   51 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA---IVTVNDGKPFD---E------------------------------NPTAQS   51 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC---EEEEEESSCGG---G------------------------------CHHHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEeCCccc---C------------------------------ChHHHH
Confidence            45899999999999999999999998   89999986420   0                              012345


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEE-eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLK-YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  217 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~-~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  217 (497)
                      +++.|+++..+...     +..   +     -. +|.||+++|..+. .|........|+..+.   +.+-+.. +...+
T Consensus        52 L~~~gi~~~~g~~~-----~~~---~-----~~~~d~vv~spgi~~~-~p~~~~a~~~gi~v~~---~~e~~~~-~~~~~  113 (451)
T 3lk7_A           52 LLEEGIKVVCGSHP-----LEL---L-----DEDFCYMIKNPGIPYN-NPMVKKALEKQIPVLT---EVELAYL-VSESQ  113 (451)
T ss_dssp             HHHTTCEEEESCCC-----GGG---G-----GSCEEEEEECTTSCTT-SHHHHHHHHTTCCEEC---HHHHHHH-HCCSE
T ss_pred             HHhCCCEEEECCCh-----HHh---h-----cCCCCEEEECCcCCCC-ChhHHHHHHCCCcEEe---HHHHHHH-hcCCC
Confidence            77889999877431     110   0     12 7999999998654 2321111112333332   2222222 22334


Q ss_pred             eEEEEcC-CH--HHHHHHHHHHhCCCcEEEE
Q 010917          218 KVVVVGG-GY--IGMEVAAAAVGWKLDTTII  245 (497)
Q Consensus       218 ~vvVvG~-G~--~g~e~A~~l~~~g~~Vtlv  245 (497)
                      -|.|=|+ |-  +.--++..|...|.++.+.
T Consensus       114 ~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~  144 (451)
T 3lk7_A          114 LIGITGSNGKTTTTTMIAEVLNAGGQRGLLA  144 (451)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            4555553 32  3344556677778776443

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.54  E-value=0.012  Score=62.01  Aligned_cols=50  Identities=14%  Similarity=0.187  Sum_probs=36.7

Q ss_pred             HHHHC-Cc-EEEcCCeEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEeccCcC
Q 010917          267 LYQQN-GV-KFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGAKP  316 (497)
Q Consensus       267 ~l~~~-GV-~i~~~~~v~~i~~~~~--~~v~~v~~---~~g~--~i~~D~vv~a~G~~p  316 (497)
                      .+++. || +++.++.+.++..+++  +++.++..   .+|+  .+.++.||+|+|...
T Consensus       160 ~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          160 AAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             HHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            33455 89 9999999999876433  27776653   5665  689999999999643

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.44  E-value=0.0011  Score=68.28  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=42.0

Q ss_pred             HHHCCcEEEcCCeEEEEEeCCC--CcEEEEEeC--CCc--EE---EcCEEEEeccCcCCCcchhhcCC
Q 010917          268 YQQNGVKFVKGASIKNLEAGSD--GRVAAVKLE--DGS--TI---DADTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       268 l~~~GV~i~~~~~v~~i~~~~~--~~v~~v~~~--~g~--~i---~~D~vv~a~G~~p~~~~~~~~gl  326 (497)
                      .++.|+++++++.|+++..+++  +++.+|...  +|+  ++   .++.||+|+|.-.+..++..+|+
T Consensus       204 ~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi  271 (536)
T 1ju2_A          204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV  271 (536)
T ss_dssp             SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence            4678999999999999986543  478788774  454  34   57899999997544455554443

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.34  E-value=0.0031  Score=57.98  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5999999999999999999999999999988765

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.33  E-value=0.002  Score=66.65  Aligned_cols=37  Identities=32%  Similarity=0.430  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..+|+||||||.||+.+|.+|++.+  ..+|+|||+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~--~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENP--NVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTST--TSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCC--CCcEEEEecCCC
Confidence            4589999999999999999999986  238999999875

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.25  E-value=0.0022  Score=65.87  Aligned_cols=57  Identities=19%  Similarity=0.372  Sum_probs=41.0

Q ss_pred             HHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeccCcCCCcchhhcCC
Q 010917          269 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       269 ~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vv~a~G~~p~~~~~~~~gl  326 (497)
                      ...++++..++.+.++... ++++.++...+.   .++.++.||+|.|.--...+|..+|+
T Consensus       222 ~r~nl~v~~~~~v~~i~~~-~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SGi  281 (526)
T 3t37_A          222 GRKNLTILTGSRVRRLKLE-GNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSGI  281 (526)
T ss_dssp             TCTTEEEECSCEEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             CCCCeEEEeCCEEEEEEec-CCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhccC
Confidence            4568999999999999754 566666655332   35778999999997654456665554

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.21  E-value=0.019  Score=58.38  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC------cEEEEEeCCC-----cEEEcCEEEEeccCcCCCc
Q 010917          259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG------RVAAVKLEDG-----STIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~------~v~~v~~~~g-----~~i~~D~vv~a~G~~p~~~  319 (497)
                      ++.++++...++.+..+.++++|++++..+++      ....|+..++     +++.++.||+|+|..|+..
T Consensus       146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence            46667776667777788999999999764332      1234554433     3688999999999988754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.08  E-value=0.012  Score=61.97  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhC------CCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~------g~~Vtlv~~~  248 (497)
                      -.|+|||+|..|+-+|..|++.      |.+|+|+++.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            3699999999999999999997      9999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.06  E-value=0.0053  Score=61.61  Aligned_cols=82  Identities=22%  Similarity=0.141  Sum_probs=60.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++|.|+|.|.+|+.+|..|.++|.+|++.+..+.-    .++     ..+.|++.||+++.+....++          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~----~~~-----~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFD----ENP-----TAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGG----GCH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc----CCh-----HHHHHHhCCCEEEECCChHHh----------
Confidence            5789999999999999999999999999999876521    111     234678889999877531100          


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                        +. +   .+|.||+++|..++.+.+
T Consensus        69 --~~-~---~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           69 --LD-E---DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             --GG-S---CEEEEEECTTSCTTSHHH
T ss_pred             --hc-C---CCCEEEECCcCCCCChhH
Confidence              00 0   168999999998877653

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.03  E-value=0.0035  Score=64.88  Aligned_cols=78  Identities=15%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCC---CCcEEEEEeC--CCc--EEEcC-EEEEeccCcCCCcc-----------hh
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLE--DGS--TIDAD-TIVIGIGAKPTVSP-----------FE  322 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~---~~~v~~v~~~--~g~--~i~~D-~vv~a~G~~p~~~~-----------~~  322 (497)
                      .++...+++.|+++++++.|++|.-+.   ++++++|++.  +|+  ++.+. -||+|.|.--...+           |+
T Consensus       231 ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~  310 (583)
T 3qvp_A          231 EWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILE  310 (583)
T ss_dssp             HHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHG
T ss_pred             HHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHHH
Confidence            344444567899999999999987542   5678888764  564  56776 69999997533344           34


Q ss_pred             hcCCcccCCCEEecCCCC
Q 010917          323 RVGLNSSVGGIQVDGQFR  340 (497)
Q Consensus       323 ~~gl~~~~g~i~vd~~~~  340 (497)
                      .+|+++-..-. |-++|+
T Consensus       311 ~~GI~vv~dLP-VG~NLq  327 (583)
T 3qvp_A          311 PLGIDTVVDLP-VGLNLQ  327 (583)
T ss_dssp             GGTCCCSBCCC-TTCCBB
T ss_pred             hCCCCceeeCc-cccchh
Confidence            44554422234 666665

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.02  E-value=0.0048  Score=62.97  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=42.5

Q ss_pred             HHHC-CcEEEcCCeEEEEEeCCCC-cEEEEEeC--CC-----cEEEcCEEEEeccCcCCCcchhhcC
Q 010917          268 YQQN-GVKFVKGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       268 l~~~-GV~i~~~~~v~~i~~~~~~-~v~~v~~~--~g-----~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                      ..++ ++++++++.|++|..++++ ++.+|...  +|     .++.++.||+|+|.-....++..+|
T Consensus       231 a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg  297 (504)
T 1n4w_A          231 ALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR  297 (504)
T ss_dssp             HHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence            3455 5999999999999865434 77888774  56     3688999999999754445555544

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.91  E-value=0.0061  Score=62.22  Aligned_cols=63  Identities=10%  Similarity=0.133  Sum_probs=43.9

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCC-cEEEEEeC--CC-----cEEEcCEEEEeccCcCCCcchhhcC
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG  325 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~-~v~~v~~~--~g-----~~i~~D~vv~a~G~~p~~~~~~~~g  325 (497)
                      ++....+..++++++++.|++|..++++ ++.+|...  +|     .++.++.||+|.|.-....+|..++
T Consensus       232 ~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg  302 (507)
T 1coy_A          232 YLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK  302 (507)
T ss_dssp             HHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence            3334334446999999999999865444 67788774  45     3688999999999754445555544

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.76  E-value=0.0062  Score=62.00  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      |+|+|||+|..|+-+|..|++.|.+|+|+++.+++..
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG   38 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGG   38 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-----
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCC
Confidence            6899999999999999999999999999999876643

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.73  E-value=0.012  Score=56.16  Aligned_cols=80  Identities=23%  Similarity=0.221  Sum_probs=58.8

Q ss_pred             cCCeEEEEcCCHHHHH-HHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          215 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e-~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      ..++|.|||.|-+|+. +|..|.++|.+|++.+..+..      +     ..+.|++.|++++.+.....+         
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~------~-----~~~~L~~~gi~v~~g~~~~~l---------   62 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP------P-----MSTQLEALGIDVYEGFDAAQL---------   62 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT------T-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc------H-----HHHHHHhCCCEEECCCCHHHc---------
Confidence            3578999999999996 899999999999999876531      1     234578889998866321110         


Q ss_pred             EEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          294 AVKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       294 ~v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                          ..   ..+|.||++.|..|+.+.+
T Consensus        63 ----~~---~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A           63 ----DE---FKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             ----GS---CCCSEEEECTTCCTTCHHH
T ss_pred             ----CC---CCCCEEEECCCcCCCCHHH
Confidence                00   1479999999998887654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.68  E-value=0.016  Score=58.21  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=30.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      -+|+|+|+|--|...|..|.+.|+   +|++||+++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~---~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENN---DITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTE---EEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            379999999999999999999988   899999986

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.67  E-value=0.0082  Score=62.40  Aligned_cols=61  Identities=13%  Similarity=0.254  Sum_probs=42.9

Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCC---CcEEEEEeC--CCc--EEEc-CEEEEeccCcCCCcchhhcCC
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKLE--DGS--TIDA-DTIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~---~~v~~v~~~--~g~--~i~~-D~vv~a~G~~p~~~~~~~~gl  326 (497)
                      ...++.|+++++++.|++|..+++   +++.+|...  +|+  ++.+ +.||+|+|.-....+|..+|+
T Consensus       239 ~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI  307 (587)
T 1gpe_A          239 PNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI  307 (587)
T ss_dssp             TTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred             HhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence            334567999999999999875432   467777664  564  5778 899999998655455554443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.66  E-value=0.016  Score=47.68  Aligned_cols=37  Identities=11%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+.+|+|+|.|.-|...|..|.+.|+   +|+++|+++
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~---~v~vid~~~   40 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDI---PLVVIETSR   40 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            4456799999999999999999999998   899999874

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.63  E-value=0.0069  Score=62.41  Aligned_cols=64  Identities=22%  Similarity=0.356  Sum_probs=44.6

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EEEcC-EEEEeccCcCCCcchhhcCC
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDAD-TIVIGIGAKPTVSPFERVGL  326 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~~D-~vv~a~G~~p~~~~~~~~gl  326 (497)
                      ++....++.|+++++++.|++|..++++++.+|.+.+   |+  ++.++ .||+|+|.--...++..+|+
T Consensus       214 ~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGi  283 (546)
T 2jbv_A          214 YIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI  283 (546)
T ss_dssp             HTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             HHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCC
Confidence            3334344679999999999999865437777887643   53  68898 99999997433345554443

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.55  E-value=0.026  Score=56.64  Aligned_cols=40  Identities=15%  Similarity=0.336  Sum_probs=35.5

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ++..+||+|||+|++|+++|..|++.|+   +|+++|+++...
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~---~v~~~e~~~~~G   56 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGK---KILVLDRNPYYG   56 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeccCCCC
Confidence            3456899999999999999999999998   899999998654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=95.54  E-value=0.0051  Score=63.46  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHH-cCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~-~g~~~~~V~lie~~~~~   98 (497)
                      .+|++|||||.||+.+|.+|++ .+.   +|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~---~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDV---SVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTC---CEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCC---cEEEEecCCcc
Confidence            4799999999999999999998 444   89999998653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.49  E-value=0.012  Score=52.47  Aligned_cols=107  Identities=15%  Similarity=0.223  Sum_probs=66.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++|+|||+|.+|...+..|.+.|.+|+++.+.       ..++    +.+..++.+++++.+.-    .         
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~----l~~l~~~~~i~~i~~~~----~---------   85 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAE----INEWEAKGQLRVKRKKV----G---------   85 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHH----HHHHHHTTSCEEECSCC----C---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHH----HHHHHHcCCcEEEECCC----C---------
Confidence            5799999999999999999999999999999764       2333    33334455677654321    1         


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecC-----CCCCCCCcEEEecccc
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVA  353 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~iya~GD~~  353 (497)
                          .+..-.+|.||.|||.......+...   .. .++.||.     .+.-..|.++--||..
T Consensus        86 ----~~dL~~adLVIaAT~d~~~N~~I~~~---ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           86 ----EEDLLNVFFIVVATNDQAVNKFVKQH---IK-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             ----GGGSSSCSEEEECCCCTHHHHHHHHH---SC-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             ----HhHhCCCCEEEECCCCHHHHHHHHHH---Hh-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence                01112389999999875433333222   11 2444442     1222457777777765

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.21  E-value=0.021  Score=47.91  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .....+|+|+|+|.-|...|..|.+.|+   +|+++++++
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~---~V~vid~~~   52 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH---SVVVVDKNE   52 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            3445799999999999999999999987   899999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.12  E-value=0.028  Score=47.02  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.+|+|+|+|..|...|..|.+.|+   +|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~---~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ---NVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC---CEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---CEEEEECCC
Confidence            4689999999999999999999988   899999863

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.70  E-value=0.024  Score=57.54  Aligned_cols=74  Identities=18%  Similarity=0.249  Sum_probs=52.8

Q ss_pred             CCCCcEEEEcCchHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917           58 NENREFVIVGGGNAAGY-AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  136 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~-aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (497)
                      ...++|.|||-|-+|++ +|+.|.++|+   +|++.|....                                    ...
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~---~V~~~D~~~~------------------------------------~~~   60 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGY---QISGSDLAPN------------------------------------SVT   60 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTC---EEEEECSSCC------------------------------------HHH
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCC---eEEEEECCCC------------------------------------HHH
Confidence            34589999999999997 6999999998   8999886521                                    012


Q ss_pred             hHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      +.+++.|+++..+..     ++.  +       ..+|.||+.+|..+.
T Consensus        61 ~~l~~~gi~~~~g~~-----~~~--~-------~~~d~vV~Spgi~~~   94 (494)
T 4hv4_A           61 QHLTALGAQIYFHHR-----PEN--V-------LDASVVVVSTAISAD   94 (494)
T ss_dssp             HHHHHTTCEEESSCC-----GGG--G-------TTCSEEEECTTSCTT
T ss_pred             HHHHHCCCEEECCCC-----HHH--c-------CCCCEEEECCCCCCC
Confidence            457788999887632     111  0       147999999997654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.68  E-value=0.038  Score=45.36  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=31.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +++|+|+|+|.-|...|..|.+.|+   +|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~---~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK---KVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEECCH
Confidence            4689999999999999999999998   899999764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.66  E-value=0.097  Score=54.06  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=33.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      ++++|+|.|..|..+|..|.+.|.+|++++..+...
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~  384 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPV  384 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHH
Confidence            899999999999999999999999999999887544

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.64  E-value=0.035  Score=56.31  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      ..++|+|||+|.+|+.+|..|++.|.+|+|+++.+++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            357899999999999999999999999999998876654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.64  E-value=0.03  Score=44.12  Aligned_cols=34  Identities=12%  Similarity=0.265  Sum_probs=30.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~   96 (497)
                      +++|+|+|+|..|...+..|.+.| +   +|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~---~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY---SVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE---EEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc---eEEEEeCCH
Confidence            468999999999999999999998 5   799998753

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.58  E-value=0.032  Score=55.27  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      ++|+|||+|..|+-+|..|++.|.+|+|+++.+.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            47999999999999999999999999999988654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.54  E-value=0.13  Score=48.77  Aligned_cols=85  Identities=13%  Similarity=0.176  Sum_probs=55.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcC--CeEEEEEeCCCCcEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG--ASIKNLEAGSDGRVAA  294 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~--~~v~~i~~~~~~~v~~  294 (497)
                      .+|+|||+|.+|.-+|..|++.|.+|+++.|.+  .             +.+++.|+.+...  ... .+.+     + .
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~Gl~~~~~~~g~~-~~~~-----~-~   60 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--Y-------------ETVKAKGIRIRSATLGDY-TFRP-----A-A   60 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--H-------------HHHHHHCEEEEETTTCCE-EECC-----S-C
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--H-------------HHHHhCCcEEeecCCCcE-EEee-----e-e
Confidence            579999999999999999999999999998753  0             2356667766531  111 1100     0 1


Q ss_pred             EEeCCC-cEE-EcCEEEEeccCcCCCcchhhc
Q 010917          295 VKLEDG-STI-DADTIVIGIGAKPTVSPFERV  324 (497)
Q Consensus       295 v~~~~g-~~i-~~D~vv~a~G~~p~~~~~~~~  324 (497)
                      +. .+- +.. ++|.||+|+-.....+.++.+
T Consensus        61 ~~-~~~~~~~~~~DlVilavK~~~~~~~l~~l   91 (320)
T 3i83_A           61 VV-RSAAELETKPDCTLLCIKVVEGADRVGLL   91 (320)
T ss_dssp             EE-SCGGGCSSCCSEEEECCCCCTTCCHHHHH
T ss_pred             eE-CCHHHcCCCCCEEEEecCCCChHHHHHHH
Confidence            11 222 222 689999998877665555554

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.44  E-value=0.037  Score=49.35  Aligned_cols=37  Identities=24%  Similarity=0.508  Sum_probs=32.7

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ....++|+|||||..|...|..|.+.|.   +|+|++++.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA---~VtVvap~~   64 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA---AITVVAPTV   64 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC---CEEEECSSC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCC
Confidence            3457899999999999999999999987   899999763

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=94.34  E-value=0.037  Score=54.73  Aligned_cols=35  Identities=23%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      ++|+|||+|..|+-+|..|++.|.+|+|+++.+.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            36999999999999999999999999999998665

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.24  E-value=0.035  Score=55.20  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .++|+|||+|+.|+.+|..|++.|.+|+|+++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.19  E-value=0.05  Score=44.30  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+|+|||+|.-|...|..|.+.|+   +|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~---~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            489999999999999999999987   899998753

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=94.19  E-value=0.021  Score=54.45  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=45.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEecCCcchhhcc------C-HHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRLF------T-PSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~~~~~------~-~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      ...|+|||+|+.|+-+|..|++  .|.+|+++++.+.+.....      + ..+...+.+.+++.|+++..+...
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~~  139 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDY  139 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSSE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCcc
Confidence            4579999999999999999964  6999999998765432110      0 011123345567788888766543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.15  E-value=0.037  Score=55.23  Aligned_cols=130  Identities=15%  Similarity=0.165  Sum_probs=76.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||.|.+|+++|+.|+++|+   +|+++|.....+.                                   ...+
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~---~v~~~D~~~~~~~-----------------------------------~~~l   46 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMTPPG-----------------------------------LDKL   46 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTC---CCEEEESSSSCTT-----------------------------------GGGS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCC---EEEEEECCCCcch-----------------------------------hHHh
Confidence            4689999999999999999999998   8999998654210                                   0112


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  219 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  219 (497)
                      + .|+++..+...    .+.  +       -.+|.+|+++|..+. .|.+......++..+..   .+.+... ...+.|
T Consensus        47 ~-~G~~~~~g~~~----~~~--~-------~~~d~vV~s~gi~~~-~p~~~~a~~~~~~v~~~---~~~~~~~-~~~~vI  107 (439)
T 2x5o_A           47 P-EAVERHTGSLN----DEW--L-------MAADLIVASPGIALA-HPSLSAAADAGIEIVGD---IELFCRE-AQAPIV  107 (439)
T ss_dssp             C-TTSCEEESSCC----HHH--H-------HTCSEEEECTTSCTT-CHHHHHHHHTTCEEECH---HHHHHHH-CCSCEE
T ss_pred             h-CCCEEEECCCc----HHH--h-------ccCCEEEeCCCCCCC-CHHHHHHHHCCCcEEEH---HHHHHHh-cCCCEE
Confidence            3 57777665421    000  0       036889999997654 23322111134444432   2223232 234556


Q ss_pred             EEEcC---CHHHHHHHHHHHhCCCcEEEEe
Q 010917          220 VVVGG---GYIGMEVAAAAVGWKLDTTIIF  246 (497)
Q Consensus       220 vVvG~---G~~g~e~A~~l~~~g~~Vtlv~  246 (497)
                      .|-|+   +-+..-++..|...|.++.+..
T Consensus       108 ~VTGTnGKTTT~~ml~~iL~~~g~~~~~~g  137 (439)
T 2x5o_A          108 AITGSNGKSTVTTLVGEMAKAAGVNVGVGG  137 (439)
T ss_dssp             EEECSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEECCCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            66664   2344556666777888776543

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=94.14  E-value=0.046  Score=52.72  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=31.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999885

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=94.00  E-value=0.048  Score=54.08  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      +|+|||+|..|+-+|..|++.|.+|+|+++.+++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            6999999999999999999999999999987654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.96  E-value=0.054  Score=52.51  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=30.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      ++|+|||+|..|+++|..+++.|.+|+++++.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            469999999999999999999999999999754

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.94  E-value=0.056  Score=53.50  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=34.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcch
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLL  252 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~  252 (497)
                      ...+|+|||+|..|+-+|..|++.| .+|+|+++.+++.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVG   43 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            3568999999999999999999999 8999999887653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.92  E-value=0.096  Score=42.91  Aligned_cols=77  Identities=14%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  295 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v  295 (497)
                      .++++|+|.|..|..+|..|.+.|.+|+++++.+.         ..    +.+++.|+.++.+.-      . +.   . 
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~---------~~----~~~~~~g~~~i~gd~------~-~~---~-   62 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT---------RV----DELRERGVRAVLGNA------A-NE---E-   62 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH---------HH----HHHHHTTCEEEESCT------T-SH---H-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH---------HH----HHHHHcCCCEEECCC------C-CH---H-
Confidence            46899999999999999999999999999987532         11    224556777654320      0 00   0 


Q ss_pred             EeCCCcEEEcCEEEEeccCcC
Q 010917          296 KLEDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       296 ~~~~g~~i~~D~vv~a~G~~p  316 (497)
                      .+..-..-.+|.||++++...
T Consensus        63 ~l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           63 IMQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             HHHHTTGGGCSEEEECCSCHH
T ss_pred             HHHhcCcccCCEEEEECCChH
Confidence            000001135899999987643

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.91  E-value=0.06  Score=52.30  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=33.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccc
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL  251 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~  251 (497)
                      ...+|+|||+|..|+-+|..|.+.|.+|+|+++. +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            3578999999999999999999999999999988 554

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.86  E-value=0.054  Score=54.87  Aligned_cols=77  Identities=16%  Similarity=0.152  Sum_probs=57.0

Q ss_pred             ccCCeEEEEcCCHHHHH-HHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE
Q 010917          214 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  292 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v  292 (497)
                      ...++|.|||-|-+|+- +|..|.++|.+|+..+....       +     ..+.|++.|++++.+.....         
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~---------   78 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------S-----VTQHLTALGAQIYFHHRPEN---------   78 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEESSCCGGG---------
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------H-----HHHHHHHCCCEEECCCCHHH---------
Confidence            34689999999999996 89999999999999876532       1     22457888999987632110         


Q ss_pred             EEEEeCCCcEEEcCEEEEeccCcCCCcc
Q 010917          293 AAVKLEDGSTIDADTIVIGIGAKPTVSP  320 (497)
Q Consensus       293 ~~v~~~~g~~i~~D~vv~a~G~~p~~~~  320 (497)
                          +     ..+|.||++.|..++.+.
T Consensus        79 ----~-----~~~d~vV~Spgi~~~~p~   97 (494)
T 4hv4_A           79 ----V-----LDASVVVVSTAISADNPE   97 (494)
T ss_dssp             ----G-----TTCSEEEECTTSCTTCHH
T ss_pred             ----c-----CCCCEEEECCCCCCCCHH
Confidence                1     137999999999887654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.85  E-value=0.051  Score=54.73  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL  251 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~  251 (497)
                      ++|+|||+|.+|+-+|..|++.|.  +|+|+++.+++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            589999999999999999999999  99999987654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.83  E-value=0.091  Score=43.89  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=33.4

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      ..+++|+|+|+|.+|..+|..|.+.|.+|+++.+.+.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4678999999999999999999999999999988654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.72  E-value=0.058  Score=53.26  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.71  E-value=0.083  Score=45.49  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=31.7

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~   96 (497)
                      ....+|+|||.|.-|...|..|.+. |+   +|+++|+++
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~---~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK---ISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS---CEEEEESCH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC---eEEEEECCH
Confidence            3356899999999999999999998 98   799999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=93.70  E-value=0.057  Score=55.08  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  251 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~  251 (497)
                      ..+|+|||+|..|+-+|..|.+.| .+|+|++.++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            358999999999999999999999 999999987643

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=93.69  E-value=0.06  Score=53.92  Aligned_cols=39  Identities=15%  Similarity=0.048  Sum_probs=35.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~  254 (497)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+.+..+
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            457999999999999999999999999999999876554

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=93.67  E-value=0.059  Score=54.24  Aligned_cols=38  Identities=29%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      ....+|+|||+|..|+-+|..|++.|.+|+|+++.+++
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            34678999999999999999999999999999988654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=93.64  E-value=0.066  Score=54.14  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=35.1

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      ....+|+|||+|..|+-+|..|++.|.+|+|+++.+++..
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            3467899999999999999999999999999998876543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.61  E-value=0.067  Score=43.70  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +++|+|+|+|.-|...|..|.+.|+   +|+++++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~---~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4689999999999999999999987   799998753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.61  E-value=0.063  Score=52.29  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3699999999999999999999999999998753

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=93.48  E-value=0.063  Score=52.05  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=32.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      ..++|+|||+|.+|+-+|..|+ .|.+|+|+++.+.+
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            3578999999999999999999 69999999988644

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=93.42  E-value=0.074  Score=51.37  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      ..+|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            457999999999999999999999999999975

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=93.42  E-value=0.067  Score=54.59  Aligned_cols=61  Identities=28%  Similarity=0.366  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc-----------------cCHHHHHHHHHHHHHCCcEEEc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------FTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++.+++..+.                 +... ...+.+.+++.|++...
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~   81 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK   81 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence            3579999999999999999999999999999987663321                 1111 24556778888887643

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.36  E-value=0.041  Score=50.73  Aligned_cols=37  Identities=19%  Similarity=0.411  Sum_probs=32.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...++|+|||||..|...+..|.+.|.   +|+||+++..
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga---~VtViap~~~   47 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDLH   47 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEEC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCCC
Confidence            346899999999999999999999997   8999998653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.24  E-value=0.14  Score=41.81  Aligned_cols=33  Identities=9%  Similarity=0.083  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .++++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            468999999999999999999999999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.24  E-value=0.03  Score=55.92  Aligned_cols=78  Identities=17%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++|+|||.|.+|+..|..|.++|.+|+..+........           ..++ .|+++..+...   . .      .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~-----------~~l~-~G~~~~~g~~~---~-~------~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKLP-EAVERHTGSLN---D-E------W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTG-----------GGSC-TTSCEEESSCC---H-H------H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchh-----------HHhh-CCCEEEECCCc---H-H------H
Confidence            4689999999999999999999999999999876542210           2345 68888755421   0 0      0


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                      +      . .+|.||++.|..|+.+.+
T Consensus        62 ~------~-~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A           62 L------M-AADLIVASPGIALAHPSL   81 (439)
T ss_dssp             H------H-TCSEEEECTTSCTTCHHH
T ss_pred             h------c-cCCEEEeCCCCCCCCHHH
Confidence            0      1 378999999988765543

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=93.06  E-value=0.16  Score=51.85  Aligned_cols=131  Identities=12%  Similarity=0.045  Sum_probs=76.3

Q ss_pred             CCcEEEEcCchHHHHH-HHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           60 NREFVIVGGGNAAGYA-ARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~a-A~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      .++|.+||-|-+||++ |+.|.++|+   +|++.|.....                                   ...+.
T Consensus        19 ~~~i~~iGiGg~Gms~lA~~l~~~G~---~V~~sD~~~~~-----------------------------------~~~~~   60 (524)
T 3hn7_A           19 GMHIHILGICGTFMGSLALLARALGH---TVTGSDANIYP-----------------------------------PMSTQ   60 (524)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCCT-----------------------------------THHHH
T ss_pred             CCEEEEEEecHhhHHHHHHHHHhCCC---EEEEECCCCCc-----------------------------------HHHHH
Confidence            4789999999999985 888899998   89999876421                                   01345


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCe
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  218 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  218 (497)
                      +++.|+++..+..     ++..        .-.+|.||+.+|..+. .|.+......|+..+.   +.+-+.+.+...++
T Consensus        61 L~~~gi~~~~G~~-----~~~~--------~~~~d~vV~Spgi~~~-~p~l~~a~~~gi~v~~---~~e~l~~~~~~~~~  123 (524)
T 3hn7_A           61 LEQAGVTIEEGYL-----IAHL--------QPAPDLVVVGNAMKRG-MDVIEYMLDTGLRYTS---GPQFLSEQVLQSRH  123 (524)
T ss_dssp             HHHTTCEEEESCC-----GGGG--------CSCCSEEEECTTCCTT-SHHHHHHHHHTCCEEE---HHHHHHHHTGGGSE
T ss_pred             HHHCCCEEECCCC-----HHHc--------CCCCCEEEECCCcCCC-CHHHHHHHHCCCcEEE---HHHHHHHHHhccCc
Confidence            6778999887632     1110        0147899999997654 2321110012332322   23333332223344


Q ss_pred             -EEEEcC-CH--HHHHHHHHHHhCCCcEEEE
Q 010917          219 -VVVVGG-GY--IGMEVAAAAVGWKLDTTII  245 (497)
Q Consensus       219 -vvVvG~-G~--~g~e~A~~l~~~g~~Vtlv  245 (497)
                       |.|=|+ |-  +..-++..|...|.+++++
T Consensus       124 vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~  154 (524)
T 3hn7_A          124 VIAVAGTHGKTTTTTMLAWILHYAGIDAGFL  154 (524)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHcCCCceEE
Confidence             445553 32  3344566677788887644

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=93.00  E-value=0.11  Score=52.97  Aligned_cols=80  Identities=20%  Similarity=0.136  Sum_probs=57.6

Q ss_pred             ccCCeEEEEcCCHHHHH-HHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE
Q 010917          214 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  292 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v  292 (497)
                      ...++|.+||-|-+|+- +|..|.++|.+|+..+....      ++     ..+.|++.||+++.+.....+        
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~--------   77 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL--------   77 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG--------
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc--------
Confidence            46789999999999997 68889999999999987642      11     235578889998766321111        


Q ss_pred             EEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917          293 AAVKLEDGSTIDADTIVIGIGAKPTVSPF  321 (497)
Q Consensus       293 ~~v~~~~g~~i~~D~vv~a~G~~p~~~~~  321 (497)
                               .-.+|.||++.|..++.+.+
T Consensus        78 ---------~~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           78 ---------QPAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             ---------CSCCSEEEECTTCCTTSHHH
T ss_pred             ---------CCCCCEEEECCCcCCCCHHH
Confidence                     01479999999998876553

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=93.00  E-value=0.1  Score=50.92  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++.+.+.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            479999999999999999999999999999887654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=92.99  E-value=0.1  Score=54.12  Aligned_cols=61  Identities=16%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCC-CcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~-~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ...+.+.+.+.++..|.++++++.|.+|...++ +++.+|.+.+|+++.||.||......|.
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            446788888899999999999999999976543 7888888888999999999998776664

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.84  E-value=0.11  Score=50.20  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      +|+|+|||||..|..+|+.+++.|+   +++++|.++..
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~---~vv~vd~~~~~   36 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGM---KVVLVDKNPQA   36 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCCC
Confidence            5799999999999999999999999   89999987654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=92.68  E-value=0.11  Score=51.96  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++.+++.
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            579999999999999999999999999999876543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=92.66  E-value=0.11  Score=52.67  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      ...+|+|||+|..|+-+|..|++.|.+|+|+++.+++.
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            35789999999999999999999999999999987654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=92.64  E-value=0.11  Score=51.71  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  250 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~  250 (497)
                      ..+|+|||+|..|+-+|..|++.|. +|+|+++.+.
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            3579999999999999999999999 9999998764

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=92.61  E-value=0.12  Score=50.48  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++.+.+.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            3579999999999999999999999999999886654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.57  E-value=0.15  Score=48.10  Aligned_cols=85  Identities=16%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  296 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~  296 (497)
                      .+|+|||+|..|.-+|..|++.|.+|+++.|.+  .             +.+++.|+.+.....-..+.+     + .+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~g~~~~~~~g~~~~~~-----~-~~~   61 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--Y-------------EAIAGNGLKVFSINGDFTLPH-----V-KGY   61 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--H-------------HHHHHTCEEEEETTCCEEESC-----C-CEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--H-------------HHHHhCCCEEEcCCCeEEEee-----c-eee
Confidence            479999999999999999999999999998753  1             235677877653210001100     0 011


Q ss_pred             eCCCc-EEEcCEEEEeccCcCCCcchhh
Q 010917          297 LEDGS-TIDADTIVIGIGAKPTVSPFER  323 (497)
Q Consensus       297 ~~~g~-~i~~D~vv~a~G~~p~~~~~~~  323 (497)
                       .+-+ .-++|.||+|+-.....+.++.
T Consensus        62 -~~~~~~~~~D~vilavk~~~~~~~l~~   88 (312)
T 3hn2_A           62 -RAPEEIGPMDLVLVGLKTFANSRYEEL   88 (312)
T ss_dssp             -SCHHHHCCCSEEEECCCGGGGGGHHHH
T ss_pred             -cCHHHcCCCCEEEEecCCCCcHHHHHH
Confidence             1211 1268999999876554444444

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=92.55  E-value=0.089  Score=51.53  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=30.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh-CC-CcEEEEecCC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVG-WK-LDTTIIFPEN  249 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~-~g-~~Vtlv~~~~  249 (497)
                      .+|+|||+|..|+.+|..|++ .| .+|+|+++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 99 9999999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.45  E-value=0.17  Score=47.99  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      ...+|.|||+|..|.-+|..|++.|.+|+++ ++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            4678999999999999999999999999998 54

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.43  E-value=0.13  Score=50.03  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|||+|.+|+.+|..|+..|.   +|+++|..+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA---VVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            35799999999999999999999987   899999875

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=92.39  E-value=0.13  Score=54.34  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  306 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEA  306 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            5899999999999999999999999999998643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.36  E-value=0.18  Score=41.86  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            468999999999999999999999999999875

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=92.35  E-value=0.087  Score=50.60  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC------CcEEEEecCC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPEN  249 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g------~~Vtlv~~~~  249 (497)
                      +|+|||+|.+|+-+|..|++.|      .+|+|+++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6999999999999999999998      8999999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.29  E-value=0.13  Score=54.57  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++.+.+
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  299 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP  299 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence            57999999999999999999999999999986433

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=92.25  E-value=0.11  Score=51.07  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcch
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLL  252 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~  252 (497)
                      ..+|+|||+|..|+-+|..|++. |.+|+|+++.+++.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            45799999999999999999998 99999999886553

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=92.22  E-value=0.14  Score=49.75  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      +++|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            68999999999999999999999999999876543

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=91.97  E-value=0.15  Score=52.31  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHh---CCCcEEEEecCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPEN  249 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~  249 (497)
                      ..+|+|||||..|+-+|..|++   .|.+|+|+++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            5689999999999999999999   999999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.93  E-value=0.18  Score=47.39  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=31.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...++|.|||+|.-|...|..|++.|+   +|+++|+++
T Consensus        13 ~~~~~I~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~   48 (302)
T 1f0y_A           13 IIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE   48 (302)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            345789999999999999999999998   899999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.92  E-value=0.14  Score=49.40  Aligned_cols=35  Identities=17%  Similarity=0.070  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|||+|..|+.+|..|+..|.   +|+++|+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA---KTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            45799999999999999999999997   899999874

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=91.90  E-value=0.34  Score=48.92  Aligned_cols=36  Identities=17%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      .+||+|||||++||+||..|++.|+   +|+|+|+++..
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~   74 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGF---KTLLLEARDRI   74 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTC---CEEEECSSSBS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            3799999999999999999999998   89999998754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.86  E-value=0.16  Score=48.95  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ....+|||+|+|.+|..+|..|...|.+  +|+++|+..
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~G  226 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKG  226 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCC
Confidence            4568999999999999999999999863  899999983

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.80  E-value=0.16  Score=46.29  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .++|+|||+|-.|..+|..|++.|..  +|+|+|.+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCc
Confidence            47999999999999999999999963  8999998754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.80  E-value=0.16  Score=48.97  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=32.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ....+|||+|||.||+.+|..|...|.+  +|+++|+..
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G  222 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG  222 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence            4457999999999999999999999863  899999974

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=91.63  E-value=0.17  Score=53.27  Aligned_cols=37  Identities=24%  Similarity=0.520  Sum_probs=33.4

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      ..++|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4679999999999999999999999999999987543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.51  E-value=0.39  Score=45.17  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=48.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  296 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~  296 (497)
                      .+|+|||+|.+|.-+|..|+ .|.+|+++.|.+.         -    .+.+++.|+.+..... ....        .+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~---------~----~~~l~~~G~~~~~~~~-~~~~--------~~~   59 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQE---------Q----AAAIQSEGIRLYKGGE-EFRA--------DCS   59 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH---------H----HHHHHHHCEEEEETTE-EEEE--------CCE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHH---------H----HHHHHhCCceEecCCC-eecc--------ccc
Confidence            57999999999999999999 9999999977531         1    1334566887753221 1111        111


Q ss_pred             eCCCcEEEcCEEEEeccCc
Q 010917          297 LEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       297 ~~~g~~i~~D~vv~a~G~~  315 (497)
                      ......-++|.||+|+-..
T Consensus        60 ~~~~~~~~~D~vilavK~~   78 (307)
T 3ego_A           60 ADTSINSDFDLLVVTVKQH   78 (307)
T ss_dssp             EESSCCSCCSEEEECCCGG
T ss_pred             ccccccCCCCEEEEEeCHH
Confidence            1111123589999997543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.51  E-value=0.18  Score=44.82  Aligned_cols=32  Identities=28%  Similarity=0.580  Sum_probs=29.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +|+|+|+|.-|...|..|.+.|+   +|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~---~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY---GVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            69999999999999999999988   899999764

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=91.51  E-value=0.18  Score=54.44  Aligned_cols=36  Identities=22%  Similarity=0.505  Sum_probs=32.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      .++|+|||+|..|+.+|..|.+.|.+|+|+++.+++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence            568999999999999999999999999999987543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=91.45  E-value=0.14  Score=51.47  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENH  250 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~  250 (497)
                      .+|+|||+|.+|+-+|..|++.|  .+|+++++.+.
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            57999999999999999999999  99999998644

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.40  E-value=0.22  Score=46.32  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=31.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .++|.|||+|.-|...|..|++.|+   +|+++|+++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~---~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGF---AVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCH
Confidence            4799999999999999999999998   899998864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=91.39  E-value=0.61  Score=48.41  Aligned_cols=39  Identities=18%  Similarity=0.321  Sum_probs=35.3

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ++.+||+|||+|..|...|..|++.|.   +|.+||++++..
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~---~vl~id~~~~~g   44 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQ---RVLHVDSRSYYG   44 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCCccc
Confidence            346999999999999999999999997   899999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.37  E-value=0.25  Score=39.94  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      +.+++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            358999999999999999999999999999764

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=91.23  E-value=0.19  Score=51.73  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .-.|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            3579999999999999999999999999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=91.23  E-value=0.16  Score=46.69  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .+++|+|||+|.+|...+..|.+.|++|+++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5789999999999999999999999999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.05  E-value=0.15  Score=47.92  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=29.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .+|.|||+|..|.-+|..|.+.|.+|+++.+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.91  E-value=0.21  Score=47.73  Aligned_cols=77  Identities=16%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  296 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~  296 (497)
                      .+|.|||+|..|.-+|..|++.|.+|+++.|.+    .          .+.+++.|+.+..... . ....    + .. 
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~----~----------~~~~~~~g~~~~~~~~-~-~~~~----~-~~-   61 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARGA----T----------LQALQTAGLRLTEDGA-T-HTLP----V-RA-   61 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH----H----------HHHHHHTCEEEEETTE-E-EEEC----C-EE-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH----H----------HHHHHHCCCEEecCCC-e-EEEe----e-eE-
Confidence            579999999999999999999999999987531    1          1335677887653211 1 1100    0 11 


Q ss_pred             eCCC-cEEEcCEEEEeccCc
Q 010917          297 LEDG-STIDADTIVIGIGAK  315 (497)
Q Consensus       297 ~~~g-~~i~~D~vv~a~G~~  315 (497)
                      ..+- ..-++|.||+|+...
T Consensus        62 ~~~~~~~~~~D~Vilavk~~   81 (335)
T 3ghy_A           62 THDAAALGEQDVVIVAVKAP   81 (335)
T ss_dssp             ESCHHHHCCCSEEEECCCHH
T ss_pred             ECCHHHcCCCCEEEEeCCch
Confidence            1121 123589999998653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.88  E-value=0.23  Score=38.71  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE  248 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~  248 (497)
                      .++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            468999999999999999999999 889888775

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=90.69  E-value=0.28  Score=49.44  Aligned_cols=38  Identities=16%  Similarity=0.161  Sum_probs=33.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcch
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLL  252 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~  252 (497)
                      ...+|+|||+|..|+-+|..|++.| .+|+++++.+.+.
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            3568999999999999999999998 7999999887653

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=90.69  E-value=0.23  Score=49.28  Aligned_cols=39  Identities=13%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      +..+||+|||+|++|+++|..|++.|+   +|+++|+++...
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~g   42 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGK---KVLHMDRNPYYG   42 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCcc
Confidence            345799999999999999999999998   899999987643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.60  E-value=0.24  Score=48.54  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..+|+|||+|.+|+.+|..++..|.   +|+++|..+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGA---IVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5799999999999999999999986   799998764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.57  E-value=0.32  Score=45.88  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      ..++|.|||+|..|..+|..++..|.+|++++..+..+.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~   43 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQIT   43 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence            357899999999999999999999999999988765443

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=90.56  E-value=0.15  Score=50.88  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=29.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC-CcEEEEec
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFP  247 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~  247 (497)
                      .+|+|||+|..|+-+|..|++.| .+|+|+++
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            47999999999999999999999 99999998

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=90.52  E-value=0.29  Score=39.73  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .++++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999998764

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=90.43  E-value=0.28  Score=46.48  Aligned_cols=36  Identities=19%  Similarity=0.538  Sum_probs=32.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..+|+|||+|-.|..+|..|++.|.  ++++|+|.+..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGV--g~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGV--RKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEecCCEe
Confidence            5799999999999999999999997  49999998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.28  E-value=0.29  Score=47.70  Aligned_cols=35  Identities=20%  Similarity=0.113  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|||+|.+|+.++..++..|.   +|+++|+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46799999999999999999999986   799998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=90.28  E-value=0.22  Score=49.78  Aligned_cols=35  Identities=37%  Similarity=0.609  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..++|+|||||..|...+..|.+.|.   +|+|++++.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga---~V~vi~~~~   45 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF   45 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC---EEEEEcCCC
Confidence            45899999999999999999999987   899999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.26  E-value=0.32  Score=46.06  Aligned_cols=36  Identities=14%  Similarity=0.370  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ...+|.|||+|..|.+.|..|+..|+ ..+++++|..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence            35689999999999999999999986 4589999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.19  E-value=0.31  Score=46.12  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.||+|||+|..|.+.|..|+..++ ..+|+++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            4699999999999999999999886 55899999763

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=89.96  E-value=0.28  Score=44.63  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..+|+|||+|-.|..+|..|++.|..  +++|+|.+..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCCCc
Confidence            57999999999999999999999973  8999998754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=89.88  E-value=0.36  Score=45.54  Aligned_cols=37  Identities=11%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ++..++|.|||+|.-|.+.|..|++.|+  .+|+++|..
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~   41 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP   41 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence            3445799999999999999999999886  389999976

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.59  E-value=0.29  Score=45.52  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...+|+|||+|-.|-.+|..|++.|.  ++++|+|.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGV--G~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCC--CEEEEECCCcc
Confidence            35799999999999999999999996  49999998754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=89.54  E-value=0.34  Score=45.86  Aligned_cols=33  Identities=15%  Similarity=0.409  Sum_probs=30.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+|.|||+|.-|...|..|++.|+   +|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH---CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC---EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---eEEEEeCCh
Confidence            589999999999999999999987   899998753

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=89.54  E-value=0.36  Score=46.49  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             cCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           56 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        56 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      |.+.+.+|.|||+|.-|.+.|..|++.|+   +|+++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~---~V~l~~r~~   62 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQ---KVRLWSYES   62 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTC---CEEEECSCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            33445689999999999999999999998   899999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.51  E-value=0.35  Score=46.69  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .++|+|+|+|.+|..++..|+..|.   +|+++++.+
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga---~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            4799999999999999999999986   899998763

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=89.31  E-value=0.45  Score=45.25  Aligned_cols=35  Identities=11%  Similarity=0.228  Sum_probs=30.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.+|+|||+|.-|.+.|..|++.|+-  +|+|+|.++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~--~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCh
Confidence            45899999999999999999998862  599999764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=89.30  E-value=0.32  Score=45.88  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..+|.|||+|.-|...|..++..|+   +|+|+|.++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~---~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF---RVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC---CEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            4689999999999999999999999   899999875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.05  E-value=0.44  Score=43.70  Aligned_cols=34  Identities=18%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .++++|||+|-+|-++|..|++.|.   +|+++.+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~---~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL---QVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6899999999999999999999984   899998763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.69  E-value=0.42  Score=40.93  Aligned_cols=34  Identities=18%  Similarity=0.084  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPEN  249 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  249 (497)
                      +++++|+|.|.+|..+|..|.+. |.+|+++++.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            56899999999999999999999 99999997653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=88.67  E-value=0.37  Score=49.75  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~  161 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP  161 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            457999999999999999999999999999987644

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=88.62  E-value=0.37  Score=45.40  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      .+|.|||+|.-|.+.|..|++.|+   +|++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE---DVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC---CEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC---eEEEEEcC
Confidence            589999999999999999999987   79999875

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=88.58  E-value=0.42  Score=47.92  Aligned_cols=38  Identities=26%  Similarity=0.390  Sum_probs=32.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcchh
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ  253 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~  253 (497)
                      ..+|+|||+|..|+-+|..|.+.|. +|+++++.+++..
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg   42 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   42 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCC
Confidence            4579999999999999999999998 8999998866543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=88.43  E-value=0.56  Score=44.71  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=31.0

Q ss_pred             CCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           59 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        59 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      .+.||+|||+ |..|.++|..+..+|. ..+|+|+|..
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~   43 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPF   43 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            3569999997 9999999999999986 4489999975

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=88.37  E-value=0.61  Score=43.19  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      -++|.|||+|..|..+|..+++.|.+|+++++.+..+
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~   40 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDAL   40 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence            3689999999999999999999999999998776443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.32  E-value=1.5  Score=43.14  Aligned_cols=105  Identities=19%  Similarity=0.280  Sum_probs=0.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccC-------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT-------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  288 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~-------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  288 (497)
                      +.+..|||.|+.|.-+|..|++.|.+|+.+.+.+........       +.+.+.+.+.+....+.+-.+..        
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~--------   82 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPE--------   82 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCC--------
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchh--------


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEeccCcCCCc---------c---hhhcCCcccCCCEEecCCCCCCCCc
Q 010917          289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVS---------P---FERVGLNSSVGGIQVDGQFRTRMPG  345 (497)
Q Consensus       289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~---------~---~~~~gl~~~~g~i~vd~~~~t~~~~  345 (497)
                                     .+|.+|+|++...+.+         +   .+.+.-....|.+.|+..  |..|+
T Consensus        83 ---------------~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S--TV~pg  134 (431)
T 3ojo_A           83 ---------------ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES--TIAPK  134 (431)
T ss_dssp             ---------------CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS--CCCTT
T ss_pred             ---------------hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec--CCChh

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=88.24  E-value=0.51  Score=43.44  Aligned_cols=34  Identities=12%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ..++++|+|+|.+|.++|..|++.|.   +|+++++.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~---~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC---AVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC---EEEEEECC
Confidence            45789999999999999999999985   89998875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=88.18  E-value=0.19  Score=41.34  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .++|+|||+|..|...|..|.+.|+   +|+++++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~---~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQY---KVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTC---EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEcCCH
Confidence            5799999999999999999998876   688888753

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=88.15  E-value=0.45  Score=45.69  Aligned_cols=36  Identities=19%  Similarity=0.468  Sum_probs=32.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..+|+|||+|-.|..+|..|++.|.  ++++|+|.+..
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGv--g~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGI--GEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC--SEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC--CeEEEECCCcC
Confidence            5799999999999999999999996  48999998754

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=88.03  E-value=0.9  Score=45.30  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      .+++|+|||+|.+|...+..|.+.|.+|+++.+..       .+++    .+..++.+++++.+..    +         
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~-------~~~~----~~l~~~~~i~~~~~~~----~---------   66 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF-------IPQF----TVWANEGMLTLVEGPF----D---------   66 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC-------CHHH----HHHHTTTSCEEEESSC----C---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC-------CHHH----HHHHhcCCEEEEECCC----C---------
Confidence            47899999999999999999999999999998642       2322    2323335666654321    1         


Q ss_pred             EEeCCCcEEEcCEEEEeccCc-CCCcc
Q 010917          295 VKLEDGSTIDADTIVIGIGAK-PTVSP  320 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~-p~~~~  320 (497)
                          .+..-.+|.||.|+|.. .|..+
T Consensus        67 ----~~~l~~~~lVi~at~~~~~n~~i   89 (457)
T 1pjq_A           67 ----ETLLDSCWLAIAATDDDTVNQRV   89 (457)
T ss_dssp             ----GGGGTTCSEEEECCSCHHHHHHH
T ss_pred             ----ccccCCccEEEEcCCCHHHHHHH
Confidence                11111478999999876 34433

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=87.85  E-value=0.5  Score=44.34  Aligned_cols=33  Identities=12%  Similarity=0.228  Sum_probs=29.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+|.|||+|.-|...|..|++.|+   +|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN---DVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC---cEEEEECCH
Confidence            489999999999999999999997   899998753

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=87.83  E-value=0.48  Score=49.37  Aligned_cols=35  Identities=29%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      ..|+|||+|..|+.+|..|++.|.+|+++++.+..
T Consensus        47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~   81 (623)
T 3pl8_A           47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   81 (623)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence            47999999999999999999999999999987644

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.81  E-value=0.43  Score=46.88  Aligned_cols=34  Identities=15%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.+|+|||.|.-|...|..|.+.|+   +|++||.++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~---~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV---KMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            3589999999999999999999998   899999875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.79  E-value=0.6  Score=43.07  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +++|+|.|+|.-|...+..|.++|+   +|+++++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH---EVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4689999999999999999999998   899998864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=87.76  E-value=0.59  Score=41.11  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|.|||+|.-|.+.|..|++.|+   +|+++++++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~---~V~~~~~~~   52 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGH---EVTYYGSKD   52 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            34689999999999999999999987   899998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=87.73  E-value=0.6  Score=44.07  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      .+.||+|||+|..|.+.|..|+..++ ..+|.|+|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            34699999999999999999999875 4589999865

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=87.72  E-value=0.71  Score=44.93  Aligned_cols=38  Identities=18%  Similarity=0.332  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ...++|+|||+|..|...+..+++.|+   ++.+++..+..
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~---~vi~~d~~~~~   49 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGY---KIAVLDPTKNS   49 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCC
Confidence            346799999999999999999999998   89999876543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=87.68  E-value=0.5  Score=44.65  Aligned_cols=93  Identities=14%  Similarity=0.035  Sum_probs=0.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEE-EEEeCCCCcEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK-NLEAGSDGRVAA  294 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~-~i~~~~~~~v~~  294 (497)
                      .+|.|||.|..|.-+|..|++.| .+|+++.+.+....+      .+...+.+.+.|+       .. ....-       
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~------~~~~~~~~~~~g~-------~~~s~~e~-------   84 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAA------SGALRARAAELGV-------EPLDDVAG-------   84 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTT------HHHHHHHHHHTTC-------EEESSGGG-------
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccc------hHHHHHHHHHCCC-------CCCCHHHH-------


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEec
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD  336 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd  336 (497)
                             .-.+|.||+|+......+.++.+.-....+.+.+|
T Consensus        85 -------~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           85 -------IACADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             -------GGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             -------HhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=87.63  E-value=0.55  Score=45.44  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..++|+|+|+|..|..+|..|+..|.   +|+++++.+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga---~V~~~d~~~  199 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA---QVTILDVNH  199 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            34799999999999999999999987   899998753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=87.62  E-value=0.53  Score=45.13  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+|.|||+|.-|...|..|++.|+   +|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~---~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            589999999999999999999987   799998753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=87.59  E-value=0.59  Score=44.09  Aligned_cols=35  Identities=11%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+|+|||+|.-|...|..|++.|+ ..+|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            589999999999999999999886 34799998763

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=87.57  E-value=0.62  Score=43.17  Aligned_cols=36  Identities=25%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ...++++|+|+|-+|-+++..|++.|..  +|+++++.
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~--~v~i~~R~  160 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQ--KLQVADLD  160 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCC--EEEEEECC
Confidence            4568999999999999999999999863  69998776

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.53  E-value=0.44  Score=43.99  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +++|+|.|+|.-|...+..|.++|+   +|+.+.+.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW---RIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC---EEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC---EEEEEEcCh
Confidence            4689999999999999999999998   899987753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=87.50  E-value=0.59  Score=44.48  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=29.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ..+|.|||+|.-|...|..|++.|+   +|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~---~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE---AINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC---CEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC---EEEEEECh
Confidence            3589999999999999999999997   79999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	497
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	2e-24
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	3e-24
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	5e-23
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	5e-22
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	7e-18
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	3e-17
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-16
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-08
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	6e-16
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	1e-15
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	8e-04
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	5e-14
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	2e-13
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	1e-12
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	2e-12
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	2e-09
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-12
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	6e-12
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	9e-11
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	1e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	3e-09
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	7e-09
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	7e-09
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	1e-08
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	1e-08
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-08
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	1e-08
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	3e-08
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	9e-08
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	2e-07
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	1e-06
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-06
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	7e-06
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	8e-06
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	1e-05
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-05
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	2e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	5e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	8e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	9e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	4e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.002
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	0.003
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.003
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.003
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.004
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.004

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 96.1 bits (238), Expect = 2e-24
 Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 187 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 246
                G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A+   +  T++ 
Sbjct: 6   ASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLD 65

Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDA 305
               +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V AV  EDG+ + A
Sbjct: 66  TAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA 125

Query: 306 DTIVIGIG 313
           D ++ GIG
Sbjct: 126 DLVIAGIG 133

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 95.6 bits (237), Expect = 3e-24
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 190 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249
           + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    +  +++  + 
Sbjct: 4   LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63

Query: 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309
            L+ R    +LA    + +   GV      S+     G       V L+DG+ I AD +V
Sbjct: 64  RLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVV 117

Query: 310 IGIG 313
           +GIG
Sbjct: 118 VGIG 121

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (229), Expect = 5e-23
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLD 241
                          R + D  +L     + K + ++GGG++G E+A A          +
Sbjct: 7   IDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTE 66

Query: 242 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 301
              +FPE   + ++    L+    +  ++ GVK +  A ++++          +KL+DG 
Sbjct: 67  VIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGR 124

Query: 302 TIDADTIVIGIG 313
            ++ D IV  +G
Sbjct: 125 KVETDHIVAAVG 136

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 89.1 bits (220), Expect = 5e-22
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 191 GGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248
           G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I   
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308
           +  L             +  + N +    G +++  E   DGRV  V + D +  DAD +
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLV 119

Query: 309 VIGI 312
           V+ +
Sbjct: 120 VVAV 123

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 77.4 bits (190), Expect = 7e-18
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 194 LPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 250
           + G   +  +R + DAD +  S+E + + +++GGG+IG+E+A           +I     
Sbjct: 7   IKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66

Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
            L       L+   + + ++ GVKF   + +   EA  +G      L +   I+    + 
Sbjct: 67  FLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFIEGKVKIC 117

Query: 311 GIG 313
            IG
Sbjct: 118 AIG 120

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 75.6 bits (185), Expect = 3e-17
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 194 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
           +PGV Y  D     AL       ++V VVG GYIG+E+     G    T +    +  L 
Sbjct: 2   IPGVEYGIDSDGFFAL---PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP 58

Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313
                  ++   ++    G +    A  K +   +DG +  ++LEDG +   D ++  IG
Sbjct: 59  SFDPMI-SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG 116

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 75.2 bits (183), Expect = 2e-16
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 18/182 (9%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------Q 266
             VVV+G G   +   A          I    +   +    P L++ +            
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 267 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 326
             +   V+++ G + +      D +   V L DG T+   T+V+  GA P          
Sbjct: 64  CKRAPEVEWLLGVTAQ----SFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALA 119

Query: 327 NSSV----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 382
            ++      GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + 
Sbjct: 120 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 179

Query: 383 LL 384
           L+
Sbjct: 180 LV 181

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 31/184 (16%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 123
           V++G G A+        + G   G + +V  EA  PY+RP L+K ++   D +  R    
Sbjct: 7   VVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR---- 61

Query: 124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 183
                        +  +   +E +      S D +  T+  + G+ L YG+L++ATG   
Sbjct: 62  ------------LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109

Query: 184 SRFPEKI-----------GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA 232
                              G     +      D  AL    +  ++   + G +  +E  
Sbjct: 110 RAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALG---DVTRQRNPLSGRFERIETW 166

Query: 233 AAAV 236
           + A 
Sbjct: 167 SNAQ 170

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 71.7 bits (175), Expect = 6e-16
 Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 245
           FP      + G+       +      +++++KK+ +VG GYI +E+        +D+ I 
Sbjct: 1   FPP-----VKGIENTISSDEFF----NIKESKKIGIVGSGYIAVELINVIKRLGIDSYIF 51

Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
              N +L++ F  S+    E   ++N +  V  A +  ++  SD  + ++ L DG   + 
Sbjct: 52  ARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEH 109

Query: 306 -DTIVIGI 312
            D ++  +
Sbjct: 110 FDHVIYCV 117

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 73.3 bits (178), Expect = 1e-15
 Identities = 40/182 (21%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTII--------------FPENHLLQRLFTPSLAQ 262
             VV+VG G  G+EVA        +  I                 + +L  +    SL  
Sbjct: 4   DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 63

Query: 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 322
           R    Y    ++ + G  +  +      +V                  G    P      
Sbjct: 64  RTPDAYAAQNIQLLGGTQVTAINRDRQ-QVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

Query: 323 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 382
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+     
Sbjct: 123 AAGLQV-DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 181

Query: 383 LL 384
           L 
Sbjct: 182 LC 183

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 13/182 (7%)

Query: 58  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 117
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAE 59

Query: 118 ARLPGFHTCVGSGGERQTPEW---YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 174
           +          +   +           +  + +      ++D ++  L T    L+    
Sbjct: 60  SLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCE 119

Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 234
           L  A G                   I  V D          A+    +   ++ +E    
Sbjct: 120 LASAAGLQVDNGIVINEHMQTSDPLIMAVGDC---------ARFHSQLYDRWVRIESVPN 170

Query: 235 AV 236
           A+
Sbjct: 171 AL 172

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 66.4 bits (161), Expect = 5e-14
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 194 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL 251
           +PG+ +     +A  L    E  ++V+ VGGG+I +E A        K     +     +
Sbjct: 1   IPGIEHCISSNEAFYL---PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57

Query: 252 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 311
           + R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++ 
Sbjct: 58  ILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMA 116

Query: 312 I 312
           I
Sbjct: 117 I 117

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 203 VADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 260
           V D   L+  L  E    VVVVGG    +E           T ++     L       + 
Sbjct: 7   VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNET- 65

Query: 261 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV---KLEDGSTIDADTIVIGIG 313
                   ++ G++ + G+++  +E  ++GRV AV          I+ D + +G+G
Sbjct: 66  RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.4 bits (151), Expect = 1e-12
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
            K +VVG  Y+ +E A    G  LD T++     L    F   +A +  +  +++G+KF+
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78

Query: 277 KGASIKNLEAGSDGRVAAVKL-------EDGSTIDADTIVIGIG 313
           +      +E    G    +K+       E+    + +T+++ +G
Sbjct: 79  RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 2e-12
 Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 21/198 (10%)

Query: 57  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 116
           A  +  F+++GGG AA  AAR+         R+ IVS++   PY RP L+K   F  D  
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDD-- 57

Query: 117 PARLPGFHTCVGSGGERQTP-------------EWYKEKGIEMIYQDPVTSIDIEKQTLI 163
           P           +G ER                   +  G+ ++    V  +D+    + 
Sbjct: 58  PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 117

Query: 164 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKK 218
            N G  + Y   ++ATG T         G L              L +         A  
Sbjct: 118 LNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAAC 177

Query: 219 VVVVGGGYIGMEVAAAAV 236
              +  G   +E    AV
Sbjct: 178 FYDIKLGRRRVEHHDHAV 195

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 46/218 (21%)

Query: 217 KKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------------------ 250
              +++GGG      A +  A        I+  +                          
Sbjct: 5   VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTL 64

Query: 251 -----------LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 299
                      +  +  +  ++ +     +  GV  + G  +  L+   +        + 
Sbjct: 65  RFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQI 124

Query: 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 359
                      G      ++    + ++S  GG +V+ + + R   I+  GD A F    
Sbjct: 125 TYEKCLIAT-GGTEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIK 182

Query: 360 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF 397
             R  RVEH DHA  S +   + +  A        PY+
Sbjct: 183 LGRR-RVEHHDHAVVSGRLAGENMTGAAK------PYW 213

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.1 bits (154), Expect = 2e-12
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 23/190 (12%)

Query: 218 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLL------------QRLFTPSLAQR 263
           KV+V+G  + G E       +    +       + +             +     S+   
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTVSPFE 322
             +  +  GV       I  ++              +    + D ++I  GA P      
Sbjct: 62  TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121

Query: 323 RVGLNSSV--------GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 374
           R               G I+ D   RT  P +FA+GD         D    +    +AR+
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181

Query: 375 SAQHCIKALL 384
             +  +K L 
Sbjct: 182 QGRFAVKNLE 191

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQN 271
           E  K+ + VGGGYI +E A     +K     +       ++ R F   L ++  +  + N
Sbjct: 16  EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 75

Query: 272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313
           G+      +   +   +DG    V  E G+  D D +++ IG
Sbjct: 76  GINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIG 116

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 56.7 bits (136), Expect = 9e-11
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 194 LP-GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 252
           LP G   I     +   ++     + +VVVGGGYIG+E+  A        +++     +L
Sbjct: 2   LPLGGPVI----SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL 57

Query: 253 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 312
               +   A   E L ++ G+    G S++  E G    +A         ++AD +++ +
Sbjct: 58  PTYDSELTAPVAESL-KKLGIALHLGHSVEGYENG--CLLANDGKGGQLRLEADRVLVAV 114

Query: 313 G 313
           G
Sbjct: 115 G 115

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 194 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
           +PG            L    E   + V+VG GYI +E+A         T+++   + +L+
Sbjct: 3   IPGASLGITSDGFFQL---EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59

Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDG------STIDAD 306
             F   ++    +  +  GV+ +K + +K ++    G  V+ V    G         D D
Sbjct: 60  S-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVD 118

Query: 307 TIVIGIG 313
            ++  IG
Sbjct: 119 CLLWAIG 125

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 14/149 (9%), Positives = 36/149 (24%), Gaps = 8/149 (5%)

Query: 178 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 237
             G          G        +            + K   ++     ++   +A     
Sbjct: 4   TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62

Query: 238 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 297
              + TI+   +      FT        +   +  V+ +       +E G       +++
Sbjct: 63  AGHEVTIVSGVHLANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPGR------MEI 115

Query: 298 EDGSTIDADTIVIGIGAKPTVSPFERVGL 326
            +     +     G G  P  +      +
Sbjct: 116 YNIWGDGSKRTYRGPGVSPRDANTSHRWI 144

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 53.3 bits (127), Expect = 7e-09
 Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 20/164 (12%)

Query: 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 274
           K  K++++G G  G   A  A    L   +I       Q   T  +           G  
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 275 FVKGASIKNLEAGSDGRVAAVKLEDGST-----------IDADTIVIGIGAKP----TVS 319
            ++       +  ++     +   D                 D ++I  GA        +
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123

Query: 320 PFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPLK 358
                 L    G I+V         +T +PG+FA GDV     +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 51.4 bits (122), Expect = 7e-09
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 195 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 254
           P   +   + D+   ++  E  K +VV+GGGYIG+E+  A   +    TI+     +L  
Sbjct: 1   PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 60

Query: 255 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVI 310
            F   +A   ++  ++ GV+ V  A  K  E   DG  V      +  TIDAD +++
Sbjct: 61  -FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 194 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
           LP +     + D+   ++  E   K++++GGG IG+E+            ++   +  L 
Sbjct: 4   LPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LM 62

Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIG 311
           +     L + +++  +      +       +E   DG     +  +        D +++ 
Sbjct: 63  QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVA 122

Query: 312 IG 313
            G
Sbjct: 123 AG 124

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 203 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 262
           + D+   +       K+ V+G G IG+E+ +       + T++   +          +A+
Sbjct: 9   IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-FLPAVDEQVAK 67

Query: 263 RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIG 313
             +++  + G+K + GA +   E  +    V  V  E   +   D +++ +G
Sbjct: 68  EAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 58/218 (26%)

Query: 197 VHYIRDVADADALISSLEKAKK----VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL- 251
           +  I +  D   +I ++++        + +GGG  G   +A          I+     L 
Sbjct: 19  IDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78

Query: 252 ---LQRLFTPS-----------------------------------LAQRYEQLYQQNGV 273
                    P                                    +          +G+
Sbjct: 79  GSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGI 138

Query: 274 KFVKGASIKNLEAGSDGRV----AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 329
              +     NLE   +              G    A  +++ +GA P          ++ 
Sbjct: 139 MNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAE 198

Query: 330 V-----------GGIQVDGQFRTRMPGIFAIGDVAAFP 356
           +           G + V+   +T +P ++A+GD+   P
Sbjct: 199 LAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 236

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 20/122 (16%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 195 PGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
           PG+      +  +   +S  E  K++ ++GGG IG+E+ +         T++  +   + 
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ-IG 59

Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 308
                 +A+  ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +
Sbjct: 60  ASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL 119

Query: 309 VI 310
           ++
Sbjct: 120 LV 121

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 51.3 bits (121), Expect = 3e-08
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 15/173 (8%)

Query: 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 277
           KVV+VG G  G E+A        + T+I  E          S          +     + 
Sbjct: 2   KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60

Query: 278 ------GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 331
                        EA    R   V + +   +  DT+V+  GA        R G+++   
Sbjct: 61  WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-R 118

Query: 332 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 384
           GI +D  FRT    ++AIGD A +                A + A+     L 
Sbjct: 119 GILIDDNFRTSAKDVYAIGDCAEYSG------IIAGTAKAAMEQARVLADILK 165

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 32/183 (17%), Positives = 50/183 (27%), Gaps = 35/183 (19%)

Query: 64  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------FPL 113
           VIVG G      A+   +       + ++ KE    Y +P L+              + L
Sbjct: 4   VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59

Query: 114 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 173
           D    R         +    +  +    +  E+ Y   V +       L   SG     G
Sbjct: 60  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119

Query: 174 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 233
            LI     T              V+ I D A+              ++ G     ME A 
Sbjct: 120 ILIDDNFRT----------SAKDVYAIGDCAE-----------YSGIIAGTAKAAMEQAR 158

Query: 234 AAV 236
              
Sbjct: 159 VLA 161

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 50.6 bits (120), Expect = 9e-08
 Identities = 47/234 (20%), Positives = 71/234 (30%), Gaps = 74/234 (31%)

Query: 219 VVVVGGGYIGMEVAAAAVGWKLDTTII--------------------------------- 245
            +VVG G  G   A  A       TI+                                 
Sbjct: 6   TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65

Query: 246 -------------FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG-ASIKNLEAGSDGR 291
                        F +    +      L    E L + N V+ VKG A            
Sbjct: 66  EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFV-----DANT 120

Query: 292 VAAVKLEDGSTIDADTIVIGIGAKPTVSP----------FERVGLN-SSVGGIQVDGQFR 340
           V  V  +   T      +I  G++P               E++G+  ++ G I+VD Q R
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180

Query: 341 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL 394
           T +P IFAIGD+   P         + H   A    +   +A+    +   DY+
Sbjct: 181 TSVPNIFAIGDIVPGPA--------LAHK--ASYEGKVAAEAIAGHPSA-VDYV 223

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 22/187 (11%)

Query: 216 AKKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 273
            +KVVVVGGG  G   A         ++ T+I P         +  +     +L      
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 274 KFVKGASIKNL----EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP----------TVS 319
                A    +      G D     VK   G+    D  V+  G +            ++
Sbjct: 62  YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIA 121

Query: 320 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA-AFPLKMYDRTARVEHVDHARQSAQH 378
               +  ++    + +     +   GI  IGD + A P+     +A        + +A  
Sbjct: 122 QIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSA----NSQGKVAAAA 177

Query: 379 CIKALLS 385
            +  LL 
Sbjct: 178 -VVVLLK 183

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 194 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 252
           LPGV    + +  +   ++  E  KK+VV+G GYIG+E+ +       + T++   +  +
Sbjct: 2   LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE-I 60

Query: 253 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV 309
                  + +++++  ++ G+KF     +  ++   DG    V+   G   + I+AD ++
Sbjct: 61  VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVL 120

Query: 310 I 310
           +
Sbjct: 121 V 121

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 34/191 (17%), Positives = 50/191 (26%), Gaps = 53/191 (27%)

Query: 219 VVVVGGGYIGMEVAAAAVGWKLDTTII----------------------FPENHLLQRLF 256
            +V+GGG  G+  A  A        ++                         +       
Sbjct: 6   YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65

Query: 257 TPSLAQRYEQLYQQNGVKFVKGASIK------------------NLEAGSDGRVAAVKLE 298
                   E  +    +K  + A +                      A            
Sbjct: 66  ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125

Query: 299 DGSTIDADTIVIGIGAKPTVSPFERV----GLN--------SSVGGIQVDGQFRTRMPGI 346
            G    A  I+I  G  P+  P ERV     L+           G I VD    T + GI
Sbjct: 126 SGKKYTAPHILIATGGMPST-PHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGI 184

Query: 347 FAIGDVAAFPL 357
           +A+GDV    L
Sbjct: 185 YAVGDVCGKAL 195

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 53/191 (27%)

Query: 219 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------LQRLFTPSLAQRYEQ 266
           VV++GGG  G   A  A      TT I     L               L +  +    + 
Sbjct: 6   VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65

Query: 267 LYQQNGVKFV------------KGASIKNLEAGSDGRVAAVKLE---------------- 298
            +  +GVK              K  ++ NL  G +G     K+                 
Sbjct: 66  SFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISV 125

Query: 299 -----DGSTIDADTIVIGIGAKPT-VSPF------ERVGLN-SSVGGIQVDGQFRTRMPG 345
                + + +    I+I  G+     +PF      +++G+    +G I V+ +F T + G
Sbjct: 126 DTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSG 185

Query: 346 IFAIGDVAAFP 356
           ++AIGDV   P
Sbjct: 186 VYAIGDVIPGP 196

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 45/166 (27%)

Query: 185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV-------- 236
           R P   G   P V    DV     L        KV ++G G IG + A            
Sbjct: 3   RTPPIDGIDHPKVLSYLDV-----LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ 57

Query: 237 -----------------------------GWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 267
                                               ++  +     +    +    +   
Sbjct: 58  NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTT 117

Query: 268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313
               GVK + G S +  +   DG    +   +   +  D +VI  G
Sbjct: 118 LLSRGVKMIPGVSYQ--KIDDDGLHVVIN-GETQVLAVDNVVICAG 160

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 8e-06
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 15/155 (9%)

Query: 219 VVVVGGGYIGMEVAAAAVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
           V++VG G  G   A  +    + T ++       +L  +   +     +   Q+      
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 277 KGASIKNLEAGSDGRVAAVKLEDG-------------STIDADTIVIGIGAKPTVSPFER 323
                 +++       + +                         IV      P  +  E 
Sbjct: 64  VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123

Query: 324 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
               + +G I +D +  T + G+FA GD    P K
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 26/224 (11%), Positives = 61/224 (27%), Gaps = 26/224 (11%)

Query: 46  RRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL 105
           RRG+              +IVG G +   AAR  +E G                      
Sbjct: 35  RRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--------------- 79

Query: 106 TKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN 165
                   +K    L       G G      ++ + +  +++ ++  + + + ++ +  +
Sbjct: 80  ------TAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTAD 133

Query: 166 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG 225
                    +I+ATG +                   D+     +    +     ++    
Sbjct: 134 DVLQYGADKVIIATGAS-ECTLWNELKARESEWAENDIKGIYLIG---DAEAPRLIADAT 189

Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 269
           + G  VA           I +    +            ++  Y+
Sbjct: 190 FTGHRVAREIEEANPQIAIPYKRETIAWGTPHMP-GGNFKIEYK 232

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 266 QLYQQNGVKFVKG-ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--- 321
                 G+ F +G  ++++         A        T+D + I++  G+ P        
Sbjct: 112 MFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVP 171

Query: 322 -------ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 357
                  E+ G+  +  G I+VD   +T +  I+AIGDV    +
Sbjct: 172 RSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 22/167 (13%)

Query: 214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII----------------FPENHLLQRLFT 257
               ++ +VG G      A  A   +L   +                   +         
Sbjct: 3   THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62

Query: 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317
             L       +++   +F      + +              D   I AD +++ IGA   
Sbjct: 63  GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 122

Query: 318 VSPFERVGLNSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFPLK 358
                   L+  V     G +    G  +T +PG+FA GDV     +
Sbjct: 123 GHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 6/84 (7%), Positives = 24/84 (28%)

Query: 273 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 332
           +   K    ++L       ++    +          ++ I     +   + + +N +   
Sbjct: 198 LAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHD 257

Query: 333 IQVDGQFRTRMPGIFAIGDVAAFP 356
           + +       +  ++  G   A  
Sbjct: 258 VVIHSGAYAGVDNMYFAGMEVAEL 281

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 48/183 (26%)

Query: 219 VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 267
            + +GGG  G+     A  +     +I                         + +     
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64

Query: 268 YQQNGVKFV------------KGASIKNLEAGSDGRVAAVKLE----------------D 299
               G                + A I  +    +  +    ++                +
Sbjct: 65  GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124

Query: 300 GSTIDADTIVIGIGAKPTVSPF---ERVGLN------SSVGGIQVDGQFRTRMPGIFAIG 350
           G TI AD I+I  G +P+       + + L       +  G I VD    T + GI+A+G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184

Query: 351 DVA 353
           D  
Sbjct: 185 DNT 187

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.8 bits (97), Expect = 9e-05
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 331 GGIQVDGQFRTRMPGIFAIGDVAAFPL 357
           G I+VD Q RT +P I+AIGD+   P+
Sbjct: 179 GFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 264 YEQLYQQNGVKFVKG-ASI--KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 320
            E L+++N V + KG  S   +     +        +++   +D   I++  G++ T   
Sbjct: 102 IELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161

Query: 321 ----------FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
                      E++GL     G + +D QF ++ P I  +GDV   P
Sbjct: 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 208

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 50/189 (26%)

Query: 219 VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 267
           ++++GGG  G   A  A    + T ++                    +       +  + 
Sbjct: 8   LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRF 67

Query: 268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-------------------------- 301
            + + +     +   ++      +   V                                
Sbjct: 68  TEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE 127

Query: 302 ----TIDADTIVIGIGAKPTVSPFERVGLNSSV---------GGIQVDGQFRTRMPGIFA 348
                I  + +++  G+     P        ++           I +D + +T M  ++A
Sbjct: 128 VDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWA 187

Query: 349 IGDVAAFPL 357
           IGDVA  P+
Sbjct: 188 IGDVAGEPM 196

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 34/197 (17%), Positives = 53/197 (26%), Gaps = 21/197 (10%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
            K+ ++G G   +  A+           IF +   +  L T  + Q        N    +
Sbjct: 5   AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIEL 64

Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV------SPFERVGLNSSV 330
                  +  G       + L            IGIG    +           +  N   
Sbjct: 65  MKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWD 124

Query: 331 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC------IKALL 384
                    +T  P +FA GD+          T     V+      Q        I+A  
Sbjct: 125 LPEVDPETMQTSEPWVFAGGDIVGMA-----NTT----VESVNDGKQASWYIHKYIQAQY 175

Query: 385 SAQTHTYDYLPYFYSRV 401
            A       LP FY+ V
Sbjct: 176 GASVSAKPELPLFYTPV 192

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 331 GGIQVDGQFRTRMPGIFAIGDVAAFP 356
             + VD   RT   GI+A GD     
Sbjct: 182 NYLTVDRVSRTLATGIYAAGDCTGLL 207

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-----PENHLLQRLFTPSLAQRYEQLYQQN 271
             V+V+G G    + A +A+        +           +      +  ++ E L   +
Sbjct: 46  GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLS 105

Query: 272 GVKF------VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314
             K       +        E    G+    + +    + AD ++   G+
Sbjct: 106 PRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQI-VHLKADVVISAFGS 153

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 331 GGIQVDGQFRTRMPGIFAIGDVAAFP 356
           GG+QVD   RT +  I+AIGDV    
Sbjct: 188 GGVQVDEYSRTNVSNIYAIGDVTNRV 213

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 41/331 (12%), Positives = 87/331 (26%), Gaps = 37/331 (11%)

Query: 64  VIVGGGNAAGYAARTFVEHGMAD-----------GRLCIVSKEAYAPYERPALTKGYLFP 112
           ++VG G +   AA+   E G+ D           GR+   +                   
Sbjct: 4   IVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGI-----NVELGANWVE 58

Query: 113 LDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 172
                   P +     +   R     +      +  +D     +   Q  I  +  + + 
Sbjct: 59  GVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEM 118

Query: 173 GSLIVATGCTASR------FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 226
           G  + AT   + R        +++  + P           D      E A+   V     
Sbjct: 119 GEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQN 178

Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
                  +  G  +           +         +  ++  +    +      ++ ++ 
Sbjct: 179 TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIK- 237

Query: 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS---------PFERVGLNSSVGGIQVD- 336
                   VK ED S   AD +++        S         P  +V        + V+ 
Sbjct: 238 -YSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNR 296

Query: 337 ---GQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
               Q R  +  ++  G+  +     Y   A
Sbjct: 297 YEYDQLRAPVGRVYFTGEHTSEHYNGYVHGA 327

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 331 GGIQVDGQFRTRMPGIFAIGDVAAFP 356
           G I VD    T +PG++AIGDV    
Sbjct: 179 GFIYVDDYCATSVPGVYAIGDVVRGA 204

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 8/51 (15%), Positives = 15/51 (29%)

Query: 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309
            L Q + +L    G  ++    I  +    D            T  A  ++
Sbjct: 237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVI 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	497
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.91
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.9
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.88
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.87
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.87
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.87
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.84
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.82
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.78
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.78
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.76
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.74
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.73
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.73
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.73
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.72
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.72
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.71
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.71
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.71
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.71
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.71
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.7
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.69
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.68
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.67
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.67
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.66
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.65
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.65
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.63
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.63
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.6
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.6
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.59
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.59
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.58
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.58
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.5
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.49
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.47
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.39
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.37
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.36
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.34
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.34
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.33
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.32
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.3
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.3
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.3
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.28
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.27
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.24
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.24
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.23
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.21
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.2
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.19
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.18
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.16
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.15
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.15
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.14
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.13
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.1
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.09
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.09
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.08
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.07
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.06
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.06
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.04
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.04
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.04
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.03
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.03
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.0
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.0
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.99
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.97
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.97
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.96
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.95
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.93
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.92
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.92
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.92
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.92
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.9
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.89
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.89
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.88
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.88
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.87
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.87
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.85
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.84
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.84
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.79
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.73
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.72
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.66
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.65
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.63
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.62
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.61
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.6
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.57
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.56
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.55
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.55
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.54
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.52
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.52
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.5
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.46
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.42
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.41
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.38
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.37
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.36
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.35
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.32
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.3
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.29
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.27
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.27
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.27
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.26
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.26
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.26
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.25
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.24
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.24
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.18
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.16
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.15
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.08
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.08
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.08
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.03
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.01
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.0
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.97
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.97
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.95
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.93
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.92
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.88
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.85
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.83
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.8
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.78
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.77
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.69
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.66
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.55
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.52
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.49
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.48
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.47
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.28
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.27
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.27
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.24
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.23
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.19
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.15
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.13
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.1
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.06
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.03
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.0
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.98
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.96
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.82
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.81
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.81
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.8
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.78
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.78
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.74
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.71
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.68
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.64
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.43
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.42
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.4
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.37
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.28
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.12
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.12
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.1
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.06
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.03
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.91
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.84
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.83
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.78
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.78
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.65
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.63
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.58
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.57
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.38
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.37
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.36
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.22
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.18
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.08
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	94.88
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.8
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	94.78
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.74
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.54
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.53
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.52
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.51
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.27
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.08
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	94.03
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	94.02
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.99
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.98
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.96
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.92
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.91
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	93.89
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	93.84
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.82
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.73
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.56
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.55
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	93.47
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.44
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.29
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.02
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	92.98
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.86
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.78
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	92.73
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.58
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.53
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.25
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.11
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.94
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.93
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.9
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.74
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.71
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.7
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.68
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.67
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.62
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.58
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.49
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.34
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.34
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	91.25
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.19
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.86
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.86
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	90.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.59
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.54
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.42
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.28
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.23
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	89.94
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.93
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.87
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	89.73
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.57
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.49
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	89.37
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.3
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.23
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	89.2
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.08
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.64
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.4
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	88.37
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	88.15
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.11
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	87.87
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	87.86
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	87.75
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	87.66
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.62
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.56
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	87.55
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.48
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.31
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.28
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.18
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	87.16
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.95
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.78
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	86.77
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	86.51
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.33
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.31
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	86.16
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	85.5
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	85.42
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	85.34
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	85.31
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	85.18
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.03
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.02
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	84.77
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	84.64
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	84.62
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.51
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	84.29
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	83.96
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	83.76
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.63
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.33
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	82.85
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.65
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	82.12
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.09
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	81.51
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	81.51
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	81.39
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.34
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	81.29
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	81.26
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	81.24
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	81.13
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	80.97
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	80.95
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	80.95
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.73
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	80.45
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.36
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	80.19

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.9e-25  Score=197.31  Aligned_cols=113  Identities=32%  Similarity=0.485  Sum_probs=94.9

Q ss_pred             HHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC-CcchhhcCCccc--CCCEEecCCCCCCCC
Q 010917          268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-VSPFERVGLNSS--VGGIQVDGQFRTRMP  344 (497)
Q Consensus       268 l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~-~~~~~~~gl~~~--~g~i~vd~~~~t~~~  344 (497)
                      +++.||+++++++|++|+.. +.   .|+++||++++||.+|+|+|..|+ .++....+++.+  .+++.||+++||+ |
T Consensus        93 ~~~~gI~~~~g~~V~~id~~-~~---~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-~  167 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-S  167 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCEEE-T
T ss_pred             HHHCCeEEEeCCEEEEeecc-Cc---eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcCcC-C
Confidence            35678999999999999754 22   578999999999999999997654 456677777653  4789999999998 9


Q ss_pred             cEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917          345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  386 (497)
Q Consensus       345 ~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~  386 (497)
                      +|||+|||+.++....|. .++++|+.|+.||+.+|+||+|.
T Consensus       168 ~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~  208 (213)
T d1m6ia1         168 NIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGA  208 (213)
T ss_dssp             TEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSC
T ss_pred             ceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCC
Confidence            999999999988766665 46889999999999999999974

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.90  E-value=4.9e-24  Score=187.78  Aligned_cols=164  Identities=24%  Similarity=0.353  Sum_probs=130.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH----------HHHHHCCcEEEcCCeEEEEEe
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------QLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~----------~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      .+|+|||||++|+|+|..|+++|.+++++.+.+........+.+...+.          +.+...+|+++.+.++++++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            4699999999999999999999988877766554443221122221111          223456899999999999974


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc-----hhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP-----FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  361 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~-----~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g  361 (497)
                      .  ..  .+.+++|+++++|.+|+|+|..|+..+     ....++..+ ++|.||+++||+.|+|||+|||+..++...|
T Consensus        84 ~--~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~-~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 Q--AH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             T--TT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS-SSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             c--cc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC-CcEEeccceeccccccchhhhhhccceeeCC
Confidence            3  22  467899999999999999999997643     455667665 6799999999999999999999998887778


Q ss_pred             cccccccHHHHHHHHHHHHHHHhc
Q 010917          362 RTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       362 ~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ...++++|..|.+||+.+|+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            878888999999999999999984

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.88  E-value=9e-22  Score=159.29  Aligned_cols=121  Identities=31%  Similarity=0.530  Sum_probs=112.3

Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917          186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  265 (497)
Q Consensus       186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~  265 (497)
                      +|++||.+.+ +++++++.|+..+.+.+..+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++++.++
T Consensus         1 iP~ipG~~~~-v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~   79 (121)
T d1d7ya2           1 LPTLQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVA   79 (121)
T ss_dssp             CGGGTTCSSC-EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHH
T ss_pred             CccCCCCCCC-EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHH
Confidence            3667887765 999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  313 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G  313 (497)
                      +.++++||++++++.++++..+      .+.++||++++||.||+|+|
T Consensus        80 ~~l~~~GV~i~~~~~v~~~~~~------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          80 RYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHTTTCEEEESCCEEEEETT------EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHCCcEEEeCCEEEEEeCC------EEEECCCCEEECCEEEEeeC
Confidence            9999999999999999998732      57889999999999999998

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=5.2e-22  Score=174.86  Aligned_cols=166  Identities=27%  Similarity=0.431  Sum_probs=132.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc--------------CHHHHHHHHHHHHHCCcEEEcCCe
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF--------------TPSLAQRYEQLYQQNGVKFVKGAS  280 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~--------------~~~~~~~~~~~l~~~GV~i~~~~~  280 (497)
                      ..++|+|||||++|+|+|..|+++|.+|+++...+.......              ...............++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            468999999999999999999999999888766553221100              011111223456778899998988


Q ss_pred             EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC---CCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCC
Q 010917          281 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP---TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  357 (497)
Q Consensus       281 v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p---~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~  357 (497)
                      +..++.. ..   .+...++.++++|.+++++|.+|   +..+++..++..+ +++.||+++||+.|+|||+|||+..+.
T Consensus        82 ~~~~~~~-~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~-~~i~Vd~~~~ts~~~vya~GD~~~~~~  156 (185)
T d1q1ra1          82 VTAINRD-RQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHS  156 (185)
T ss_dssp             EEEEETT-TT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEE
T ss_pred             eeeeccc-cc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCcccc-CccccCCccccchhhhhcchhhhcccc
Confidence            8888743 22   56788899999999999999876   5556777777665 789999999999999999999999988


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          358 KMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       358 ~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ...+.+.++++|+.|.+||+.+|+||+|
T Consensus       157 ~~~~~~~~~~~a~~A~~~g~~aa~~i~G  184 (185)
T d1q1ra1         157 QLYDRWVRIESVPNALEQARKIAAILCG  184 (185)
T ss_dssp             TTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred             ccCCcccchhhHHHHHHHHHHHHHHccC
Confidence            8888888888999999999999999986

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=1.2e-21  Score=169.63  Aligned_cols=153  Identities=26%  Similarity=0.381  Sum_probs=121.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHH-------------HHHHHHHHHHCCcEEEcCCeEEE
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL-------------AQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~-------------~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      .||+|||+|++|+|+|..|++ +.+||++++.+.+..  ..+.+             .....+.+++.++++++++.+++
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~   77 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   77 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccc
Confidence            379999999999999999975 679999998764321  11111             12224567788999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcc
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  363 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~  363 (497)
                      ++..  .+   +.+.+++++++|.+|+|+|..|+ .+++..+++.+ +++.||+++||+.|+|||+|||+..+...    
T Consensus        78 i~~~--~~---~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~----  146 (167)
T d1xhca1          78 IDRG--RK---VVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII----  146 (167)
T ss_dssp             EETT--TT---EEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC----
T ss_pred             cccc--cc---cccccccccccceeEEEEEecCC-chhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE----
Confidence            9732  22   44567778999999999999775 78888899886 46999999999999999999999876543    


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 010917          364 ARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       364 ~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                        +..+..|++||+.+|++|+|
T Consensus       147 --~~~~~~a~~~a~~~a~~i~G  166 (167)
T d1xhca1         147 --AGTAKAAMEQARVLADILKG  166 (167)
T ss_dssp             --CCSHHHHHHHHHHHHHHHTT
T ss_pred             --EChHHHHHHHHHHHHHHcCC
Confidence              23677899999999999986

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.87  E-value=4.7e-22  Score=177.24  Aligned_cols=167  Identities=20%  Similarity=0.286  Sum_probs=125.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcch------hhcc------CHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF------TPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~------~~~~------~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      ||+|||||++|+|+|..|++++  .+|+++++.+.+.      +..+      .+.+.....+.++++||+++++++|++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            6999999999999999999875  4789999876541      1000      011112234668899999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCc--EEEcCEEEEeccCcC--------CCcchhhcCCcccCCCEEecCCCCCCCCcEEEecccc
Q 010917          284 LEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKP--------TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA  353 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~--~i~~D~vv~a~G~~p--------~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~  353 (497)
                      ++.. +..+....+.+|+  ++++|.+|+++|..|        ++.+++......++|+|.||+++||+.|+|||+|||+
T Consensus        82 i~~~-~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a  160 (198)
T d1nhpa1          82 IQPK-EHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDAT  160 (198)
T ss_dssp             EETT-TTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGS
T ss_pred             Eeec-cccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEeccee
Confidence            9854 3333322345554  588999999998764        4555555322345788999999999999999999999


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ..+....+....++++..|.++|+.+|+||.+
T Consensus       161 ~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~  192 (198)
T d1nhpa1         161 LIKYNPADTEVNIALATNARKQGRFAVKNLEE  192 (198)
T ss_dssp             CEEEGGGTEEECCCCHHHHHHHHHHHHHTSSS
T ss_pred             ecccccCCCcccccHHHHHHHHHHHHHHhhCC
Confidence            98776666666677899999999999999975

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=8.4e-21  Score=156.46  Aligned_cols=120  Identities=33%  Similarity=0.617  Sum_probs=112.4

Q ss_pred             CCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCc
Q 010917          194 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  273 (497)
Q Consensus       194 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV  273 (497)
                      .+++++++++.|+..+.+.+..+++++|||+|++|+|+|..|++.|.+||++++.++++++.+++.+.+.+++.++++||
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV   92 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGV   92 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTC
T ss_pred             cCCeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccccc
Confidence            56899999999999999998889999999999999999999999999999999999999988899999999999999999


Q ss_pred             EEEcCCeEEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEecc
Q 010917          274 KFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIG  313 (497)
Q Consensus       274 ~i~~~~~v~~i~~~~-~~~v~~v~~~~g~~i~~D~vv~a~G  313 (497)
                      ++++++++++++... ++.+..+.+++|+++++|.||+|+|
T Consensus        93 ~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          93 DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999998653 4567789999999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.82  E-value=1.2e-19  Score=147.34  Aligned_cols=121  Identities=26%  Similarity=0.363  Sum_probs=108.4

Q ss_pred             CCCCCCCcEEEecCHHHHHHHHHhhc--cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHH
Q 010917          189 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  266 (497)
Q Consensus       189 ~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~  266 (497)
                      +||.+++++++++++.++.++.+.+.  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++++.+++
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            46888899999999999999988764  4689999999999999999999999999999999999988899999999999


Q ss_pred             HHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEec
Q 010917          267 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  312 (497)
Q Consensus       267 ~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~  312 (497)
                      .++++||++++++++++++.  ++.+..+ +.||++++||.||+|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            99999999999999999984  4444334 6788899999999984

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=6.6e-19  Score=141.43  Aligned_cols=106  Identities=25%  Similarity=0.448  Sum_probs=95.8

Q ss_pred             HHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917          206 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  285 (497)
Q Consensus       206 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  285 (497)
                      ++.+......+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++++.+.++++||++++++.+++++
T Consensus        11 ~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~   89 (116)
T d1gesa2          11 SDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVV   89 (116)
T ss_dssp             HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEE
T ss_pred             HHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            4555555567899999999999999999999999999999999999975 899999999999999999999999999998


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917          286 AGSDGRVAAVKLEDGSTIDADTIVIGIG  313 (497)
Q Consensus       286 ~~~~~~v~~v~~~~g~~i~~D~vv~a~G  313 (497)
                      .++++.+ .+++++|+++++|.||+|+|
T Consensus        90 ~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          90 KNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             ECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             EcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            7766655 58899999999999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.78  E-value=6.2e-19  Score=143.05  Aligned_cols=118  Identities=23%  Similarity=0.422  Sum_probs=105.6

Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917          186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  265 (497)
Q Consensus       186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~  265 (497)
                      .|++||  .+.+++++++.+++.+.+.+..+++++|||||++|+|+|..|+++|.+||++++.+.+++  +++++.+.+.
T Consensus         4 ~p~ipG--~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~~~~   79 (122)
T d1xhca2           4 EPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIK   79 (122)
T ss_dssp             CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHH
T ss_pred             CcCCCC--ccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHHHHH
Confidence            356777  457899999999999999888899999999999999999999999999999999999885  7999999999


Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      +.|+++||++++++++++++.+      .+ +.+++++++|.||+|+|.
T Consensus        80 ~~l~~~GV~~~~~~~v~~~~~~------~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          80 DMLEETGVKFFLNSELLEANEE------GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHTTEEEECSCCEEEECSS------EE-EETTEEEECSCEEEECCE
T ss_pred             HHHHHCCcEEEeCCEEEEEeCC------EE-EeCCCEEECCEEEEEEEe
Confidence            9999999999999999999732      23 457788999999999995

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.6e-18  Score=141.51  Aligned_cols=118  Identities=24%  Similarity=0.480  Sum_probs=107.4

Q ss_pred             CcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHH----hCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH
Q 010917          195 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  270 (497)
Q Consensus       195 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~----~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~  270 (497)
                      +.+..++++.|+.++.+.+..+++++|||||++|+|+|..|+    +.|.+|+++++.+.++++.+++++++.+.+.+++
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~   95 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR   95 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence            468889999999999998888999999999999999999995    4689999999999999888999999999999999


Q ss_pred             CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       271 ~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      +||++++++.|++++.+ ++.+ .++++||++++||.||+|+|.
T Consensus        96 ~GV~~~~~~~V~~i~~~-~~~~-~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          96 EGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             TTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCE
T ss_pred             CCcEEEeCCEEEEEEec-CCEE-EEEECCCCEEECCEEEEeecC
Confidence            99999999999999864 3433 689999999999999999984

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.74  E-value=1.8e-17  Score=132.81  Aligned_cols=104  Identities=24%  Similarity=0.454  Sum_probs=91.6

Q ss_pred             HHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917          206 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  285 (497)
Q Consensus       206 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  285 (497)
                      ++.+.. ++.+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++++.+++.++++||++++++++++++
T Consensus        13 s~~~~~-l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~   90 (117)
T d1onfa2          13 SDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIK   90 (117)
T ss_dssp             HHHHTT-CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred             hhHHhc-cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHHHHHHHhCCCEEEECCEEEEEE
Confidence            444443 345899999999999999999999999999999999999964 899999999999999999999999999998


Q ss_pred             eCCCCcEEEEEeCCCcEEE-cCEEEEec
Q 010917          286 AGSDGRVAAVKLEDGSTID-ADTIVIGI  312 (497)
Q Consensus       286 ~~~~~~v~~v~~~~g~~i~-~D~vv~a~  312 (497)
                      ..+++.+ .+++++|++++ +|.||+|+
T Consensus        91 ~~~~~~~-~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          91 KVSDKNL-SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             ESSTTCE-EEEETTSCEEEEESEEEECC
T ss_pred             EcCCCeE-EEEECCCCEEEeCCEEEEeC
Confidence            7766655 68999998875 79999984

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.73  E-value=3.2e-17  Score=148.23  Aligned_cols=156  Identities=28%  Similarity=0.354  Sum_probs=113.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc------------------------------h----hhccC-----
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------------------L----QRLFT-----  257 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~------------------------------~----~~~~~-----  257 (497)
                      ..++|||+|+.|+++|..+++.|.+|+++++...-                              .    ...+.     
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            35899999999999999999999999999875310                              0    00000     


Q ss_pred             -------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEec--------cCcCCCcc--
Q 010917          258 -------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI--------GAKPTVSP--  320 (497)
Q Consensus       258 -------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~--------G~~p~~~~--  320 (497)
                             ..+...+...++..||+++.+.-  .+..  ..........++.++.+|.+|+++        |.+||++.  
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                   11223344556778999987742  3332  222222233344679999999985        88898875  


Q ss_pred             hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917          321 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  386 (497)
Q Consensus       321 ~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~  386 (497)
                      ++++|++.+ +|+|.||+++|||.|+|||+|||+..+.          ....|..+|+.||.+|++.
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~  216 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGH  216 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            578899875 6789999999999999999999997653          3445899999999999964

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.73  E-value=1.6e-17  Score=133.73  Aligned_cols=107  Identities=22%  Similarity=0.409  Sum_probs=93.7

Q ss_pred             HHHHHHhhccCCeEEEEcCCHHHHHHHHHHHh---CCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917          206 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  282 (497)
Q Consensus       206 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~  282 (497)
                      ++.++.....+++++|||||++|+|+|..+.+   .|.+|+++++.+++++. +++++++.+++.++++||+++++++++
T Consensus         8 s~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~   86 (117)
T d1feca2           8 SNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPA   86 (117)
T ss_dssp             HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEE
T ss_pred             hHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEE
Confidence            45555544568999999999999999987655   48899999999999975 899999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917          283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  314 (497)
Q Consensus       283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~  314 (497)
                      +|+.++++. ..+.+++|++++||.||+|+|+
T Consensus        87 ~i~~~~~g~-~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          87 KVTKNADGT-RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEEECTTSC-EEEEETTSCEEEESEEEECSCE
T ss_pred             EEEECCCCE-EEEEECCCCEEEcCEEEEecCC
Confidence            998765655 4689999999999999999995

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.9e-20  Score=159.37  Aligned_cols=149  Identities=17%  Similarity=0.190  Sum_probs=96.0

Q ss_pred             CCCchhhhcccccccccccCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCC
Q 010917           38 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP  117 (497)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~  117 (497)
                      |.+||...++...  +..+...+++|+|||||||||+||..|+++||   +|+|+|+++....+   +......+.....
T Consensus        23 C~~Np~~g~e~~~--~~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~---~Vtl~E~~~~~GG~---l~~~~~~p~~~~~   94 (179)
T d1ps9a3          23 CLVNPRACHETKM--PILPAVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGGQ---FNIAKQIPGKEEF   94 (179)
T ss_dssp             CSSCTTTTCTTTS--CCCSCSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCTT---HHHHTTSTTCTTH
T ss_pred             EeeCccccCcccc--ccCCCCCCcEEEEECccHHHHHHHHHHHhhcc---ceEEEeccCccCce---EEEEEeCcccchH
Confidence            7777765543221  22345667999999999999999999999999   89999999765321   0000000100000


Q ss_pred             CCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcE
Q 010917          118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV  197 (497)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv  197 (497)
                      .+           ..+++..++++.|++++++++|+.   +         ....||++|+|||+.++.++      .++ 
T Consensus        95 ~~-----------~~~~~~~~~~~~gV~i~l~~~Vt~---~---------~~~~~d~vilAtG~~~~~~~------~pg-  144 (179)
T d1ps9a3          95 YE-----------TLRYYRRMIEVTGVTLKLNHTVTA---D---------QLQAFDETILASGIPNRALA------QPL-  144 (179)
T ss_dssp             HH-----------HHHHHHHHHHHHTCEEEESCCCCS---S---------SSCCSSEEEECCCEECCTTH------HHH-
T ss_pred             HH-----------HHHHHHHhhhcCCeEEEeCCEEcc---c---------ccccceeEEEeecCCCcccc------cch-
Confidence            00           013445666778999999988742   1         12478999999998765322      111 


Q ss_pred             EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHH-HHHHHhCC
Q 010917          198 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEV-AAAAVGWK  239 (497)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~-A~~l~~~g  239 (497)
                                     ...+++++|+|+|.+++++ +......|
T Consensus       145 ---------------~~~g~~v~vigggd~a~~~~~~~Av~~G  172 (179)
T d1ps9a3         145 ---------------IDSGKTVHLIGGCDVAMELDARRAIAQG  172 (179)
T ss_dssp             ---------------HTTTCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred             ---------------hccCCEEEEECCcHhhhhccchhhhhcc
Confidence                           2358999999999988776 44443444

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.72  E-value=3.4e-17  Score=151.81  Aligned_cols=152  Identities=19%  Similarity=0.287  Sum_probs=106.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc-------------------------------------cCH-H
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP-S  259 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-------------------------------------~~~-~  259 (497)
                      .++|||+|+.|+++|..++++|.+|+++++.+.+....                                     ... .
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE  123 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence            59999999999999999999999999999876542100                                     000 0


Q ss_pred             HHHH------------HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch------
Q 010917          260 LAQR------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF------  321 (497)
Q Consensus       260 ~~~~------------~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~------  321 (497)
                      ....            ..+.+...++....+....-+.   ..   .+ ..+|++++||.|++|+|.+|++..+      
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d---~~---~v-~~~g~~i~ad~viiAtG~~P~~~~i~~~~~~  196 (261)
T d1mo9a1         124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID---NH---TV-EAAGKVFKAKNLILAVGAGPGTLDVPEQPRS  196 (261)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE---TT---EE-EETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee---ec---cc-ccccceEeeeeeeeccCCCCCcCcccccccc
Confidence            0000            1111223333333332222222   11   12 2367889999999999999987543      


Q ss_pred             ----hhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917          322 ----ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  386 (497)
Q Consensus       322 ----~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~  386 (497)
                          +.+|++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..+|+.||.+|+|.
T Consensus       197 ~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~----------l~~~A~~~G~~aa~~i~G~  256 (261)
T d1mo9a1         197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGE  256 (261)
T ss_dssp             HHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTC
T ss_pred             cccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHHHHCCC
Confidence                45678875 6779999999999999999999987654          3455999999999999964

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.72  E-value=2.2e-17  Score=132.64  Aligned_cols=106  Identities=24%  Similarity=0.461  Sum_probs=92.3

Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCC---CcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI  281 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v  281 (497)
                      +++.++.....+++++|||||++|+|+|..+..++   .+||++++.+++++. +++++++.+++.++++||++++++++
T Consensus         9 t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~l~~~l~~~GV~v~~~~~v   87 (117)
T d1aoga2           9 SSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGIQILTKENP   87 (117)
T ss_dssp             CHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESCCE
T ss_pred             cHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHHHHHHHHhcCcEEEcCCEE
Confidence            35555555567899999999999999998877654   579999999999975 89999999999999999999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEec
Q 010917          282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  312 (497)
Q Consensus       282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~  312 (497)
                      ++++..+++.+ .+.+++|++++||.||+|+
T Consensus        88 ~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          88 AKVELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             EEEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            99987666665 5899999999999999984

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4.4e-17  Score=131.72  Aligned_cols=106  Identities=17%  Similarity=0.364  Sum_probs=92.8

Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +++.+++....+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+++.++++||+++++++++++
T Consensus        12 ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v   90 (122)
T d1v59a2          12 SSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISA   90 (122)
T ss_dssp             CHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEE
T ss_pred             ehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEE
Confidence            35555555557899999999999999999999999999999999999985 89999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC-----cEEEcCEEEEe
Q 010917          285 EAGSDGRVAAVKLEDG-----STIDADTIVIG  311 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g-----~~i~~D~vv~a  311 (497)
                      +..+++....+.+.++     +++++|.|++|
T Consensus        91 ~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          91 KRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            9877776666666554     47999999986

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.71  E-value=3.7e-17  Score=131.60  Aligned_cols=106  Identities=20%  Similarity=0.377  Sum_probs=91.7

Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +++.+++....+++++|||+|++|+|+|..|+++|++||++++.+++++. +++++.+.+++.++++||+++++++++++
T Consensus        11 ~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i   89 (119)
T d3lada2          11 DSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILLGARVTGT   89 (119)
T ss_dssp             EHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCEEEEE
T ss_pred             chhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHhcCceeecCcEEEEE
Confidence            35666665567899999999999999999999999999999999999985 89999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC---cEEEcCEEEEecc
Q 010917          285 EAGSDGRVAAVKLEDG---STIDADTIVIGIG  313 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g---~~i~~D~vv~a~G  313 (497)
                      +..+++.  .+++.++   ++++||.|++|+|
T Consensus        90 ~~~~~~v--~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          90 EVKNKQV--TVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EECSSCE--EEEEESSSEEEEEEESEEEECSC
T ss_pred             EEeCCEE--EEEEEECCCCEEEECCEEEEeeC
Confidence            9765553  3444333   5799999999998

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.71  E-value=2e-21  Score=177.58  Aligned_cols=174  Identities=12%  Similarity=0.101  Sum_probs=99.8

Q ss_pred             ccCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCC
Q 010917           55 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ  134 (497)
Q Consensus        55 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  134 (497)
                      ++....++|+|||||||||+||..|+++|+   +|+|+|+++......       ... .    .+++...+..  ....
T Consensus        44 ~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~---~v~l~E~~~~~GG~~-------~~~-~----~~~~~~~~~~--~~~~  106 (233)
T d1djqa3          44 RQTKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGHL-------NQV-A----ALPGLGEWSY--HRDY  106 (233)
T ss_dssp             CCCSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTTH-------HHH-T----TSTTCGGGGH--HHHH
T ss_pred             CcccCCceEEEEcccHHHHHHHHHHHHhcc---ceeeEeeccccCCcc-------ccc-c----ccceeecccc--cchh
Confidence            445678999999999999999999999998   899999987653211       000 0    0000000000  0001


Q ss_pred             CHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc
Q 010917          135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  214 (497)
Q Consensus       135 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  214 (497)
                      ....+.+.....   .. ..++...+.+..++..++.||+||+|||+.+..++ +++............   ........
T Consensus       107 ~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~  178 (233)
T d1djqa3         107 RETQITKLLKKN---KE-SQLALGQKPMTADDVLQYGADKVIIATGASECTLW-NELKARESEWAENDI---KGIYLIGD  178 (233)
T ss_dssp             HHHHHHHHHTTC---TT-CEEECSCCCCCHHHHHTSCCSEEEECCCEECCHHH-HHHHHTTHHHHHTTC---CEEEECGG
T ss_pred             HHHHHHHHhhcc---ee-eeeecccccccchhhhhhccceeeeccCCCccccc-ccccccccccchhhh---hhhhhccc
Confidence            111122211111   01 11222223333333345789999999999876422 221111111111000   00001113


Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      .+++++|+|+|++|+|+|..|++.|.+|+++++.+.++.
T Consensus       179 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         179 AEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW  217 (233)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred             cCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence            568999999999999999999999999999999887653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.71  E-value=3.9e-17  Score=147.44  Aligned_cols=156  Identities=26%  Similarity=0.457  Sum_probs=113.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------ccC---
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFT---  257 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------~~~---  257 (497)
                      -.|+|||+|+.|+++|..+++.|.+|+++++.+.+...                                    ...   
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   83 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence            35999999999999999999999999999987654110                                    000   


Q ss_pred             ---------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE-EEEeCCCcEEEcCEEEEecc-----CcCCCcc--
Q 010917          258 ---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIG-----AKPTVSP--  320 (497)
Q Consensus       258 ---------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~-~v~~~~g~~i~~D~vv~a~G-----~~p~~~~--  320 (497)
                               ..+...+...++..+|+++..... ...   ..... .....+...+.+|.||+|+|     +.|+++.  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~---~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~  159 (221)
T d1dxla1          84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK-FVS---PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLN  159 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-EEE---TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSC
T ss_pred             HHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccc-ccc---ccccccccccccccccccceEEEeECCCccCccccCCCCC
Confidence                     112334455667788888765421 111   11111 11223445799999999998     4677764  


Q ss_pred             hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917          321 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  386 (497)
Q Consensus       321 ~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~  386 (497)
                      ++++|++.+ +|+|.||++++|++|+|||+|||+..+.          .+..|..+|+.+|++|++.
T Consensus       160 l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~  216 (221)
T d1dxla1         160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK  216 (221)
T ss_dssp             CTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS
T ss_pred             hHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            578899875 6789999999999999999999997654          4456889999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.71  E-value=1.4e-17  Score=134.88  Aligned_cols=109  Identities=16%  Similarity=0.251  Sum_probs=94.2

Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +++.+++....+++++|||+|++|+|+|..++++|.+||++++.+++++. +++++.+.+.+.++++||+++++++++++
T Consensus        15 ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~v   93 (125)
T d1ojta2          15 DSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAV   93 (125)
T ss_dssp             CHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEE
T ss_pred             cHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCcccccCcEEEEE
Confidence            45666665667899999999999999999999999999999999999985 79999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC--cEEEcCEEEEeccC
Q 010917          285 EAGSDGRVAAVKLEDG--STIDADTIVIGIGA  314 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~  314 (497)
                      +..+++....+...+|  +++++|.|++|+|+
T Consensus        94 ~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          94 EPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            9776654434444444  47999999999995

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.70  E-value=5.7e-17  Score=131.46  Aligned_cols=117  Identities=21%  Similarity=0.311  Sum_probs=96.3

Q ss_pred             CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917          192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  271 (497)
Q Consensus       192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (497)
                      .+.+|++...++.+.   . ...++++++|||||++|+|+|..|+++|.+|+++++.+.+++ .+++++++.+++.++++
T Consensus         2 ~~~~gv~~~~~~~~~---l-~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~~   76 (121)
T d1mo9a2           2 VNAKGVFDHATLVEE---L-DYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQ   76 (121)
T ss_dssp             TTSBTEEEHHHHHHH---C-CSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHHT
T ss_pred             CCCCCEEeHHHHHHH---H-hhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhcc
Confidence            346777765432221   1 123579999999999999999999999999999999999986 58999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEE---eCCCcEEEcCEEEEecc
Q 010917          272 GVKFVKGASIKNLEAGSDGRVAAVK---LEDGSTIDADTIVIGIG  313 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~v~~v~---~~~g~~i~~D~vv~a~G  313 (497)
                      ||++++++++++++..+++.+..+.   ..++++++||.||+|+|
T Consensus        77 gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          77 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            9999999999999987777654443   34557899999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.69  E-value=1e-16  Score=128.94  Aligned_cols=105  Identities=30%  Similarity=0.474  Sum_probs=89.6

Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +++.++.....+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.++++||+++++++++++
T Consensus        11 ~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i   89 (117)
T d1ebda2          11 DSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA   89 (117)
T ss_dssp             CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEE
T ss_pred             ChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEEE
Confidence            46666666667899999999999999999999999999999999999985 89999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC--cEEEcCEEEEe
Q 010917          285 EAGSDGRVAAVKLEDG--STIDADTIVIG  311 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g--~~i~~D~vv~a  311 (497)
                      +..+++... ....+|  +++++|.|+++
T Consensus        90 ~~~~~~~~v-~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          90 EEREDGVTV-TYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEETTEEEE-EEEETTEEEEEEESEEEEC
T ss_pred             EEcCCEEEE-EEEeCCCEEEEEeEEEEEC
Confidence            876554322 223444  57999999974

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9e-17  Score=130.60  Aligned_cols=108  Identities=22%  Similarity=0.386  Sum_probs=90.6

Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +++.++.....+++++|||+|++|+|+|..|+++|.+||++++++++++. +++++++.+.+.++++||+++++++++++
T Consensus        11 ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i   89 (125)
T d3grsa2          11 TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEV   89 (125)
T ss_dssp             CHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred             CHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence            35555554456799999999999999999999999999999999999975 89999999999999999999999999999


Q ss_pred             EeCCCCcEEE-EEeCCC------cEEEcCEEEEecc
Q 010917          285 EAGSDGRVAA-VKLEDG------STIDADTIVIGIG  313 (497)
Q Consensus       285 ~~~~~~~v~~-v~~~~g------~~i~~D~vv~a~G  313 (497)
                      +..+++.... +...+|      ..+++|.|++|+|
T Consensus        90 ~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          90 KKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            8766653322 333344      2578999999987

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=8.7e-17  Score=128.77  Aligned_cols=104  Identities=21%  Similarity=0.423  Sum_probs=86.9

Q ss_pred             HHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917          206 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  285 (497)
Q Consensus       206 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  285 (497)
                      ++........+++++|||||++|+|+|..|+++|++||++++.+++++. +++++++.+++.|+++||+++++++|++++
T Consensus        11 s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~   89 (115)
T d1lvla2          11 STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE   89 (115)
T ss_dssp             HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEE
T ss_pred             ChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEc
Confidence            4444444456799999999999999999999999999999999999986 899999999999999999999999999997


Q ss_pred             eCCCCcEEEEE-eCCCcEEEcCEEEEecc
Q 010917          286 AGSDGRVAAVK-LEDGSTIDADTIVIGIG  313 (497)
Q Consensus       286 ~~~~~~v~~v~-~~~g~~i~~D~vv~a~G  313 (497)
                         ++...... ..++++++||.|++|+|
T Consensus        90 ---~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          90 ---NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ---TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             ---CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence               23222222 22335799999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.67  E-value=1.6e-16  Score=128.65  Aligned_cols=107  Identities=21%  Similarity=0.425  Sum_probs=92.4

Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +++.++.....+++++|||+|++|+|+|..++++|.+||++++.+++++. +++++...+.+.|+++||+++++++++++
T Consensus        14 ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i   92 (123)
T d1dxla2          14 SSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGV   92 (123)
T ss_dssp             CHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEE
T ss_pred             eHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEE
Confidence            45666665667899999999999999999999999999999999999975 89999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC---cEEEcCEEEEec
Q 010917          285 EAGSDGRVAAVKLEDG---STIDADTIVIGI  312 (497)
Q Consensus       285 ~~~~~~~v~~v~~~~g---~~i~~D~vv~a~  312 (497)
                      +..+++....+...++   ++++||.|++|.
T Consensus        93 ~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          93 DTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             ECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            9776665555555443   458999999873

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=6.4e-16  Score=140.49  Aligned_cols=160  Identities=23%  Similarity=0.346  Sum_probs=109.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC---CcEEEEecCCc--------------chh------h----------------ccC-
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENH--------------LLQ------R----------------LFT-  257 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~--------------~~~------~----------------~~~-  257 (497)
                      +|+|||+|+.|+.+|..+++++   .+|+++++...              ++.      .                .++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            7999999999999998877665   56899986531              000      0                000 


Q ss_pred             -----------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC--CCcEEEEEeCCCc--EEEcCEEEEeccCcCCCcc--
Q 010917          258 -----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--  320 (497)
Q Consensus       258 -----------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~~~v~~v~~~~g~--~i~~D~vv~a~G~~p~~~~--  320 (497)
                                 ......+...++..||+++.+.... +....  ......+...+|+  ++++|.+|+++|.+|....  
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~-~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~  161 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGEL-IDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSG  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-CCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGC
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECcccc-cccccccccceEEEEecCCceeeeecceeeeecCccccccccc
Confidence                       0111235566788999998774221 11110  1122345666764  6999999999999886431  


Q ss_pred             ---------hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 010917          321 ---------FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  388 (497)
Q Consensus       321 ---------~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~  388 (497)
                               ++..+++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..+|+.||.|+++...
T Consensus       162 ~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~----------l~~~A~~~g~~aa~~~~g~~~  229 (233)
T d1xdia1         162 SVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGV  229 (233)
T ss_dssp             EEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCch----------hHHHHHHHHHHHHHHHcCCCC
Confidence                     345566665 5679999999999999999999987542          344589999999999997543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.5e-16  Score=138.89  Aligned_cols=154  Identities=21%  Similarity=0.349  Sum_probs=109.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--------------h--------------------hccC------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------Q--------------------RLFT------  257 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------~--------------------~~~~------  257 (497)
                      .++|||+|+.|+++|..+++.|.+|+++++...-.              .                    ..++      
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            48999999999999999999999999998653100              0                    0000      


Q ss_pred             ------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC--------cc--h
Q 010917          258 ------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV--------SP--F  321 (497)
Q Consensus       258 ------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~--------~~--~  321 (497)
                            ..+.....+.+++.||+++.+.-....    ...+ .+. ....++.++.+++++|..|..        +.  |
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~----~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTS----DPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEECS----CSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeeecc----ccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                  012233455678899999877532111    1111 122 234578899999999965543        32  6


Q ss_pred             hhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917          322 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       322 ~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                      ++.|++.+ +|+|.||+++|||.|+|||+|||+..+.          ....|..+|+.+|++|.+..
T Consensus       159 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~  215 (221)
T d3grsa1         159 NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYK  215 (221)
T ss_dssp             GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCC
T ss_pred             hhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCC
Confidence            77788875 6789999999999999999999987543          34458999999999999744

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.65  E-value=5.2e-16  Score=135.45  Aligned_cols=159  Identities=23%  Similarity=0.282  Sum_probs=113.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchhhccCHHHHH---------HHHHHHHHCCcEEEcCCeEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQRLFTPSLAQ---------RYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~~~~~~~~~---------~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      .+|||+|||+|++|+|+|..|++++.  +||++++.+.+......+....         .....+...++++..+. +..
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~   79 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATG   79 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEE
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEe
Confidence            37999999999999999999999874  7899999886654322222111         11233466788887664 333


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhc--------CCcccCCCEEecCC-C-CCCCCcEEEecccc
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--------GLNSSVGGIQVDGQ-F-RTRMPGIFAIGDVA  353 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~--------gl~~~~g~i~vd~~-~-~t~~~~iya~GD~~  353 (497)
                      +..  ...  .+.+.+++++++|.+|+|+|.+|+..++...        ++..+.+++.++.. + .++.++||++||++
T Consensus        80 ~~~--~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~  155 (186)
T d1fcda1          80 IDP--DKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDAS  155 (186)
T ss_dssp             CCT--TTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSE
T ss_pred             eee--ccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEecccc
Confidence            331  222  4677899999999999999999997754432        44445567766653 3 36899999999998


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      .....       ..++..|..||+.+|+||..
T Consensus       156 ~~~~~-------p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         156 IANPM-------PKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             ECTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCC-------CchHhHHHHHHHHHHHHHHH
Confidence            65321       12567799999999999974

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=1.6e-15  Score=136.65  Aligned_cols=152  Identities=22%  Similarity=0.339  Sum_probs=109.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc--------------c---------hhhc--------------cC--
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------------L---------LQRL--------------FT--  257 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~--------------~---------~~~~--------------~~--  257 (497)
                      ..++|||+|+.|+++|..++++|.+|+|+++...              +         ..+.              ..  
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIG   85 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHH
Confidence            4699999999999999999999999999986521              0         0000              00  


Q ss_pred             ----------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc--------
Q 010917          258 ----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--------  319 (497)
Q Consensus       258 ----------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~--------  319 (497)
                                ..........+++.+++++.+...  +..  ..    ....++.++.+|.+++|+|.+|...        
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~--~~~--~~----~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~  157 (220)
T d1lvla1          86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK--VLD--GK----QVEVDGQRIQCEHLLLATGSSSVELPRRPRTKG  157 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE--EEE--TT----EEEETTEEEECSEEEECCCEEECCBTEEECCSS
T ss_pred             HHhhhheeEEeeeccchhhhhccCceEEEEeeec--ccC--cc----cccccceeEeeceeeEcCCCCcccccccccccC
Confidence                      011223345567788888776422  221  11    1223567899999999999988642        


Q ss_pred             -chhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917          320 -PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  386 (497)
Q Consensus       320 -~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~  386 (497)
                       .+...++..++++|.||+++||+.|+|||+|||+..+.          ....|..+|+.+|++|+|.
T Consensus       158 ~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~  215 (220)
T d1lvla1         158 FNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGK  215 (220)
T ss_dssp             SSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTC
T ss_pred             CcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCC
Confidence             14455666778999999999999999999999998653          4455889999999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=3e-15  Score=136.27  Aligned_cols=157  Identities=21%  Similarity=0.281  Sum_probs=112.0

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      .|+|||+|+.|+.+|..+++.|.+|.+++..+.....                                           
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            4899999999999999999999999999854321000                                           


Q ss_pred             -ccC------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeccCcCCCc
Q 010917          255 -LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       255 -~~~------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vv~a~G~~p~~~  319 (497)
                       ..+            ..+...+...+++.+|+++.+...  +..  .+ ...+...+++  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~~--~~-~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FIG--PH-KIMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EEE--TT-EEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ecc--cc-ceecccccccccccccccceeecCCCceeE
Confidence             000            012233455677889999877532  221  22 2245555554  588999999999998743


Q ss_pred             c----------hhhcCCccc--CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917          320 P----------FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       320 ~----------~~~~gl~~~--~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                      .          ++..++..+  .|.|.||+++|||.|+|||+|||+..+..         ....|..+|+.+|++|+++.
T Consensus       160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~---------l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLE---------LTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCC---------CHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCcc---------cHHHHHHHHHHHHHHHcCCC
Confidence            2          345566654  37899999999999999999999865422         33458999999999999865


Q ss_pred             C
Q 010917          388 T  388 (497)
Q Consensus       388 ~  388 (497)
                      +
T Consensus       231 ~  231 (235)
T d1h6va1         231 T  231 (235)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=1.1e-14  Score=127.97  Aligned_cols=155  Identities=18%  Similarity=0.261  Sum_probs=113.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--------------------hhccCHHHHHHHHHHHHHCCcE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------QRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                      ..++|+|||||+.|+++|..+++.|.+|.++++.....                    ....++++...+++.+++.|++
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~   83 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   83 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence            35789999999999999999999999999998553210                    1112467777777888889999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC-----cCCCcchhhcCCccc-CCCEEecC-CCCCCCCcEE
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA-----KPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIF  347 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~-----~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~iy  347 (497)
                      +... .|.+++..++.  ..+. .+.....+|.+++++|.     .|++.+++. +++.+ +|+|.+|+ +++|+.|+||
T Consensus        84 i~~~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV~  158 (192)
T d1vdca1          84 IFTE-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVF  158 (192)
T ss_dssp             EECC-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEE
T ss_pred             eeee-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcC-ceeecCCCeEEeCCCceEecCCCEE
Confidence            9866 58888754333  2333 44567899999999985     577777654 45554 67898986 8999999999


Q ss_pred             EeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 010917          348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  383 (497)
Q Consensus       348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i  383 (497)
                      |+|||...+..         ....|...|..||.++
T Consensus       159 a~GDv~~~~~r---------~~v~A~g~G~~aA~~~  185 (192)
T d1vdca1         159 AAGDVQDKKYR---------QAITAAGTGCMAALDA  185 (192)
T ss_dssp             ECGGGGCSSCC---------CHHHHHHHHHHHHHHH
T ss_pred             EeeecCCcccc---------eEEEEEechHHHHHHH
Confidence            99999986542         2223555666666544

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=4.5e-15  Score=119.60  Aligned_cols=107  Identities=24%  Similarity=0.398  Sum_probs=86.6

Q ss_pred             HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      +++.+++....+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|+++++.+.+.++++||+|+++++|+++
T Consensus         9 tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~   86 (122)
T d1h6va2           9 SSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKI   86 (122)
T ss_dssp             CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEE
T ss_pred             cchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEE
Confidence            45666666667899999999999999999999999999999875 67764 89999999999999999999999999998


Q ss_pred             EeCCCC--cEEEEEeCCC-----cEEEcCEEEEecc
Q 010917          285 EAGSDG--RVAAVKLEDG-----STIDADTIVIGIG  313 (497)
Q Consensus       285 ~~~~~~--~v~~v~~~~g-----~~i~~D~vv~a~G  313 (497)
                      +..+++  ....+.+.++     ..+++|.|++|+|
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          87 EQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            754332  1223443332     2467999999997

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.59  E-value=1.1e-14  Score=131.88  Aligned_cols=158  Identities=25%  Similarity=0.303  Sum_probs=103.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------------  255 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------------------------------------------  255 (497)
                      .|+|||+|+.|+.+|..+++.|.+|+|+++.+.+....                                          
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~   87 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR   87 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence            58999999999999999999999999999876441100                                          


Q ss_pred             -----cCHHHHHHHHHHHHHCCcEEEcCCeEEEEE--------eCCCCcEEEEEeCCCcEEEcCEEEEeccC-cCCCc--
Q 010917          256 -----FTPSLAQRYEQLYQQNGVKFVKGASIKNLE--------AGSDGRVAAVKLEDGSTIDADTIVIGIGA-KPTVS--  319 (497)
Q Consensus       256 -----~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~--------~~~~~~v~~v~~~~g~~i~~D~vv~a~G~-~p~~~--  319 (497)
                           ....+...+.......+++++.+.....-.        ....... .......+...++.++++.|. .|+..  
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  166 (229)
T d1ojta1          88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQ-AAPTGEKKIVAFKNCIIAAGSRAPNGKLI  166 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTE-EEEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred             HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccccccc-ccccccccceecceEEEEecccCCccccc
Confidence                 001122233444566778776554221100        0000000 001111234556666666655 45433  


Q ss_pred             chhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917          320 PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  386 (497)
Q Consensus       320 ~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~  386 (497)
                      .++.+|++.+ +|+|.||+++|||.|+|||+|||+..+.          .+..|..+|+.||.+|++.
T Consensus       167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~~Aa~~i~G~  224 (229)
T d1ojta1         167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGH  224 (229)
T ss_dssp             TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTC
T ss_pred             chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHHHHHHHHcCC
Confidence            4688899876 6789999999999999999999997653          3445899999999999974

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.5e-14  Score=126.90  Aligned_cols=155  Identities=21%  Similarity=0.278  Sum_probs=110.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch---------------hhccCHHHHHHHHHHHHHCCcEEEcCC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------QRLFTPSLAQRYEQLYQQNGVKFVKGA  279 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------~~~~~~~~~~~~~~~l~~~GV~i~~~~  279 (497)
                      +.++|+|||||++|++.|..+++.|.+|+++++.+...               ....+.++.+.+...+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            46789999999999999999999999999998764311               11234567777788888999999866 


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC-----CcchhhcCCcccCCCEEecC-----CCCCCCCcEEEe
Q 010917          280 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAI  349 (497)
Q Consensus       280 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~-----~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~iya~  349 (497)
                      .|+++...++.  ..+.. ....++++.+++++|..|.     ..+++. .++.++|+|.+|.     .++|+.|+|||+
T Consensus        83 ~V~~~~~~~~~--~~v~~-~~~~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~~~g~i~~~~~~~~~~~~T~v~gV~aa  158 (190)
T d1trba1          83 HINKVDLQNRP--FRLNG-DNGEYTCDALIIATGASARYHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAA  158 (190)
T ss_dssp             CEEEEECSSSS--EEEEE-SSCEEEEEEEEECCCEEECCEEESCGGGTT-TSCEETTEECCCCSSSSCTTBCSSTTEEEC
T ss_pred             eeEEEecCCCc--EEEEE-eeeeEeeeeeeeecceeeeeecccceeecc-eEecCCcEEEEecCCcccccccccCeEEEe
Confidence            58888754332  23443 4457999999999997654     333333 2455678899984     568999999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 010917          350 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  383 (497)
Q Consensus       350 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i  383 (497)
                      |||+..+..         ..-.|.-+|..||.++
T Consensus       159 GDv~~~~~~---------q~i~Aag~G~~AA~~a  183 (190)
T d1trba1         159 GDVMDHIYR---------QAITSAGTGCMAALDA  183 (190)
T ss_dssp             GGGGCSSSC---------CHHHHHHHHHHHHHHH
T ss_pred             EEecCccee---------EEEEEeccHHHHHHHH
Confidence            999875432         2233555666666443

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.58  E-value=3.9e-15  Score=134.66  Aligned_cols=155  Identities=23%  Similarity=0.332  Sum_probs=110.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------c
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------L  255 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------~  255 (497)
                      .|+|||+|+.|+.+|..+++.|.+|.++++.......                                          .
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~   84 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA   84 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence            4899999999999999999999999999864211000                                          0


Q ss_pred             c------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCc--
Q 010917          256 F------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--  319 (497)
Q Consensus       256 ~------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~--  319 (497)
                      +            ...+...+...++..||+++.+......    ... ......++  .++.++.+++++|.+|...  
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~----~~~-~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~  159 (229)
T d3lada1          85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLA----GKK-VEVTAADGSSQVLDTENVILASGSKPVEIPR  159 (229)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECS----TTC-EEEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred             eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccc----cce-eeccccCccceeeecccccccCCcccccccc
Confidence            0            0112233455667789999876433211    111 12233332  4688999999999887643  


Q ss_pred             -------chhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917          320 -------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       320 -------~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                             +++++|+.++ +|+|.||++++|+.|+|||+|||+..+.          ....|..+|+.+|++|++..
T Consensus       160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~  225 (229)
T d3lada1         160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHK  225 (229)
T ss_dssp             EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCC
Confidence                   4567788776 6789999999999999999999987653          34458889999999998744

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.58  E-value=1.5e-15  Score=128.76  Aligned_cols=148  Identities=11%  Similarity=0.043  Sum_probs=112.0

Q ss_pred             ccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh-ccCCeEEEE--cCCHHHHHHHHHHHhCCCcEEEEecCCcchhh
Q 010917          178 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-EKAKKVVVV--GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  254 (497)
Q Consensus       178 AtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~-~~~~~vvVv--G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~  254 (497)
                      |||+.|..++++||.+..+.+.+ +   ++.++... ..++.++|+  |||++|+|+|..|+++|++||++++.+.+++.
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~-t---~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~   79 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQL-T---PEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM   79 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEE-C---HHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred             CCCCCCCCCCCCCCccCCCCEEE-C---HHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            89999886556788776554444 2   33333333 345666666  99999999999999999999999999988876


Q ss_pred             ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEE
Q 010917          255 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQ  334 (497)
Q Consensus       255 ~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~  334 (497)
                       +++.....+.+.|+++||++++++++.+++.+      .+.+.+......+.++.++|..|+....++.+++.+ +.+.
T Consensus        80 -~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~------~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D-~vil  151 (156)
T d1djqa2          80 -HFTLEYPNMMRRLHELHVEELGDHFCSRIEPG------RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD-SLVL  151 (156)
T ss_dssp             -HHTTCHHHHHHHHHHTTCEEEETEEEEEEETT------EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECS-EEEE
T ss_pred             -cchhHHHHHHHHHhhccceEEeccEEEEecCc------ceEEEeeeccccceeeeeeEEEecccCCccCcEecc-eEEE
Confidence             67777888899999999999999999999843      344445545567888888898888887777777665 3455


Q ss_pred             ecC
Q 010917          335 VDG  337 (497)
Q Consensus       335 vd~  337 (497)
                      ++.
T Consensus       152 vtg  154 (156)
T d1djqa2         152 VTG  154 (156)
T ss_dssp             ESC
T ss_pred             Eec
Confidence            443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.7e-13  Score=122.71  Aligned_cols=155  Identities=26%  Similarity=0.458  Sum_probs=104.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc-----c-------CHH--------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----F-------TPS--------------------------  259 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-----~-------~~~--------------------------  259 (497)
                      .|+|||+|+.|+.+|..+++.|.+|+++++.+.+....     .       ...                          
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~   86 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN   86 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence            58999999999999999999999999999876542110     0       000                          


Q ss_pred             -----------HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--------cEEEcCEEEE--------ec
Q 010917          260 -----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--------STIDADTIVI--------GI  312 (497)
Q Consensus       260 -----------~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--------~~i~~D~vv~--------a~  312 (497)
                                 +........++.+|+++.+.-  ++.   +.....+....+        ..++++.+++        ++
T Consensus        87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~  161 (233)
T d1v59a1          87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred             hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe---cCCCcEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence                       111223333455666654421  111   111112222221        2344544544        88


Q ss_pred             cCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917          313 GAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  387 (497)
Q Consensus       313 G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~  387 (497)
                      |.+|+++.  ++++|++.+ .|+|.||++++|+.|+|||+|||+..+.          ....|..+|+.||++|+++.
T Consensus       162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHHHccCC
Confidence            99999874  578888875 6789999999999999999999997653          34458999999999998754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.49  E-value=5.5e-13  Score=122.36  Aligned_cols=123  Identities=15%  Similarity=0.277  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC-cEEEEEeCCCcEEEcCEEEEeccCcCCC---------cchhhcCC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTV---------SPFERVGL  326 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~-~v~~v~~~~g~~i~~D~vv~a~G~~p~~---------~~~~~~gl  326 (497)
                      ...+.+.+.+.+++.||+++++++|++++..+++ .+..+...+++++.||.||+|+|-.+..         .+++++++
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~  187 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence            4567788888899999999999999999876554 2333456678889999999999975322         24666666


Q ss_pred             cc------cCCCEEecC----CCCC-CCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          327 NS------SVGGIQVDG----QFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       327 ~~------~~g~i~vd~----~~~t-~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      ..      ..|++.+.+    +|+. ..|++|.+|.+.......-|.     ..+.|-..|..+++.|.
T Consensus       188 ~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~-----n~~~a~~s~~~~~~~~~  251 (253)
T d2gqfa1         188 PVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGY-----NFQWAWSSAYACALSIS  251 (253)
T ss_dssp             CEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTH-----HHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCE-----ehhhhHhHHHHHHHHHh
Confidence            54      224554433    4555 679999999777643322222     23346666777776664

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=9e-13  Score=114.61  Aligned_cols=140  Identities=21%  Similarity=0.328  Sum_probs=107.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc--ch-----------hhccCHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  284 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~--~~-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  284 (497)
                      .|+|||||++|+++|..+++.|.+|++++++..  +.           +....+.+...+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            489999999999999999999999999986421  11           11123566777777788889999988888887


Q ss_pred             EeCCCC-cEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCC
Q 010917          285 EAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL  357 (497)
Q Consensus       285 ~~~~~~-~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~  357 (497)
                      ...... ........+.+++.++.++.++|..++.......++... .|.+.+|..++|+.|+||++|||...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~  157 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY  157 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc
Confidence            654332 233455667778999999999998776666555555543 5789999999999999999999998664

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.39  E-value=3.1e-13  Score=117.60  Aligned_cols=110  Identities=25%  Similarity=0.441  Sum_probs=87.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ++.+|+|||||++|+.+|..|++.|. +..|++++++...+|.++.++..+.......  .              .....
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~--~--------------~~~~~   64 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAE--K--------------IRLDC   64 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTTHHHHCCGG--G--------------SBCCG
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecccccchhhHHHhhhhhhhhhhh--h--------------HHHHH
Confidence            35679999999999999999999997 6789999998888888877665332211110  0              11123


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR  185 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~  185 (497)
                      +...++++++++++..++.+...+.+++|+++.||.+|+|+|..|..
T Consensus        65 ~~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~  111 (183)
T d1d7ya1          65 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA  111 (183)
T ss_dssp             GGSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             hhcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEccc
Confidence            45668999999999999999999999999999999999999988753

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.37  E-value=6.1e-12  Score=114.27  Aligned_cols=78  Identities=24%  Similarity=0.424  Sum_probs=64.5

Q ss_pred             cEEEcCEEEEeccCcCCCcc----------hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccH
Q 010917          301 STIDADTIVIGIGAKPTVSP----------FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  369 (497)
Q Consensus       301 ~~i~~D~vv~a~G~~p~~~~----------~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~  369 (497)
                      +.+++|.+++++|.+|....          ++.++++.+ +|.|.||+++|||.|+|||+|||+..+.          ..
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------ch
Confidence            46899999999999887431          567788775 5789999999999999999999987653          34


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 010917          370 DHARQSAQHCIKALLSAQT  388 (497)
Q Consensus       370 ~~A~~~g~~~a~~i~~~~~  388 (497)
                      ..|..+|+.+|+++++..+
T Consensus       218 ~~A~~eg~~aa~~~~~~~~  236 (240)
T d1feca1         218 PVAINEGAAFVDTVFANKP  236 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHhCCCC
Confidence            4589999999999997543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=8.5e-12  Score=111.39  Aligned_cols=152  Identities=25%  Similarity=0.360  Sum_probs=109.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------ccC----
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFT----  257 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------~~~----  257 (497)
                      .|+|||+|+.|+++|..++++|.+|+++++.+ +...                                    .++    
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            48999999999999999999999999999753 1100                                    000    


Q ss_pred             --------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--------h
Q 010917          258 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--------F  321 (497)
Q Consensus       258 --------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--------~  321 (497)
                              ..+...++..+++.||++..........        .....+++.+.++.+++|+|..|....        +
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--------~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--------KTLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--------TEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--------eeecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                    0122334555778899888765433221        122346778999999999998876432        3


Q ss_pred             hhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 010917          322 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  388 (497)
Q Consensus       322 ~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~  388 (497)
                      +..++..+ ++.+.+|+.++|+.|+||++||+....          +....+..+|+.++.++++..+
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCCC
Confidence            44566654 677999999999999999999998753          2445588899999999987543

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.34  E-value=3.9e-12  Score=98.01  Aligned_cols=91  Identities=21%  Similarity=0.389  Sum_probs=76.9

Q ss_pred             CCCCCCceeeeccccCCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhCC
Q 010917          390 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQ  466 (497)
Q Consensus       390 ~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  466 (497)
                      .+..+|||||+||+..       +|++|...+  +++.+|+.+ .+|..||+++|+++|++. +|.++++..+++|+..+
T Consensus         3 ~~~~vP~FWSdQ~d~~-------lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~-vn~~~~~~~~r~li~~~   74 (103)
T d1q1ra3           3 RDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VNRPVEFNQSKQIITDR   74 (103)
T ss_dssp             CCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCcEeeecCCCe-------eEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEE-eCCHHHHHHHHHHHHCC
Confidence            4678999999999975       999998654  577788876 679999999999999985 89999999999999999


Q ss_pred             CCCChhhhcCCC-cHHHHHHHHH
Q 010917          467 PFVDKAKLQQAS-SVEEALEIAR  488 (497)
Q Consensus       467 ~~~~~~~~~~~~-~~~~~~~~~~  488 (497)
                      ..++++.|.|+. .+.+.++.++
T Consensus        75 ~~~~~~~L~D~~~~Lk~Ll~~~~   97 (103)
T d1q1ra3          75 LPVEPNLLGDESVPLKEIIAAAK   97 (103)
T ss_dssp             CCCCHHHHTCTTSCHHHHHHHHH
T ss_pred             CCcCHHHhcCCCCCHHHHHHhhh
Confidence            999999998775 5666655444

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.34  E-value=1.1e-12  Score=115.66  Aligned_cols=110  Identities=16%  Similarity=0.291  Sum_probs=83.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  141 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (497)
                      ||+|||||++|+.+|..|++.+. +.+|+++++++...|..+.++. ++.........+           .....+.+++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-----------~~~~~~~l~~   68 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKMES   68 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhcccccchHHH-----------HHhhHHHHHH
Confidence            79999999999999999999875 6789999999887776544432 222211111111           2345678899


Q ss_pred             cCcEEEeCCcEEEEecCCCEEEEC---CCc--EEEeccEEeccCCCCC
Q 010917          142 KGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTAS  184 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~~v~~~---~g~--~i~~d~lvlAtG~~~~  184 (497)
                      .|++++++++|.+++.+.+.+++.   +|+  .+.||.+|+|+|+.+.
T Consensus        69 ~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~  116 (198)
T d1nhpa1          69 RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF  116 (198)
T ss_dssp             TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             CCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceee
Confidence            999999999999999998887653   333  5799999999998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.33  E-value=1.1e-12  Score=112.14  Aligned_cols=158  Identities=22%  Similarity=0.345  Sum_probs=98.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  141 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (497)
                      ||||||||++|+.+|..|++ +.   +|||+++++...|.++.++. .+..... ...+           .....+++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~---~Vtvv~~~~~~~~~~~~~~~-~~~~~~~-~~~~-----------~~~~~~~~~~   64 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TY---EVTVIDKEPVPYYSKPMLSH-YIAGFIP-RNRL-----------FPYSLDWYRK   64 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS---EEEEECSSSSCCCCSTTHHH-HHTTSSC-GGGG-----------CSSCHHHHHH
T ss_pred             eEEEECCcHHHHHHHHHHHc-CC---CEEEEeccccccccccchhh-hhhhhhh-hhhh-----------hHHHHHHHHh
Confidence            89999999999999999975 44   89999999887777665543 2221111 1111           2455778889


Q ss_pred             cCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCC-cEEEecCHHHH-HHHHHhh-ccCCe
Q 010917          142 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADA-DALISSL-EKAKK  218 (497)
Q Consensus       142 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~-gv~~~~~~~~~-~~~~~~~-~~~~~  218 (497)
                      .++++++++.++.++...+.+.. ++.++.||.+|+|+|..+..+....|.... ++..-..+.+. ..++..- -...+
T Consensus        65 ~~v~~~~~~~v~~i~~~~~~~~~-~~~~i~~D~li~a~G~~~~~~~~~~gl~~~~~i~v~~~~~t~~~~i~aiGD~~~~~  143 (167)
T d1xhca1          65 RGIEIRLAEEAKLIDRGRKVVIT-EKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYS  143 (167)
T ss_dssp             HTEEEECSCCEEEEETTTTEEEE-SSCEEECSEEEECCCEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEBT
T ss_pred             ccceeeeeccccccccccccccc-cccccccceeEEEEEecCCchhhhcCceeCCceeeccccEecCCCeEEeeecccCC
Confidence            99999999999999987766555 455699999999999876533221221111 22111111000 0000000 00112


Q ss_pred             EEEEcCCHHHHHHHHHHHh
Q 010917          219 VVVVGGGYIGMEVAAAAVG  237 (497)
Q Consensus       219 vvVvG~G~~g~e~A~~l~~  237 (497)
                      ..++|++..|++.|..+++
T Consensus       144 ~~~~~~~~~a~~~a~~~a~  162 (167)
T d1xhca1         144 GIIAGTAKAAMEQARVLAD  162 (167)
T ss_dssp             TBCCCSHHHHHHHHHHHHH
T ss_pred             CeEEChHHHHHHHHHHHHH
Confidence            3466888899998887765

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.32  E-value=1e-11  Score=112.43  Aligned_cols=78  Identities=24%  Similarity=0.428  Sum_probs=61.8

Q ss_pred             cEEEcCEEEEeccCcCCC--------cc--hhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHH
Q 010917          301 STIDADTIVIGIGAKPTV--------SP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  370 (497)
Q Consensus       301 ~~i~~D~vv~a~G~~p~~--------~~--~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~  370 (497)
                      +.+++|.++++++.+|..        ..  +...++..++|+|.||+++||+.|+|||+|||...+.          ...
T Consensus       148 ~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~  217 (238)
T d1aoga1         148 ERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTP  217 (238)
T ss_dssp             EEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHH
T ss_pred             ccccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chh
Confidence            457888888877766543        22  3557788888999999999999999999999987653          344


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 010917          371 HARQSAQHCIKALLSAQT  388 (497)
Q Consensus       371 ~A~~~g~~~a~~i~~~~~  388 (497)
                      .|..+|+.+|++|+++.+
T Consensus       218 ~A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         218 VAINEAAALVDTVFGTTP  235 (238)
T ss_dssp             HHHHHHHHHHHHHHSSSC
T ss_pred             hHHHHHHHHHHHHcCCCC
Confidence            589999999999997543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3.6e-12  Score=101.41  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +++|+|||||+.|+.+|..|++.|.   +|||+++.+...   |.+.           ..+           .....+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~~l---~~~d-----------~~~-----------~~~~~~~l   72 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFD-----------PMI-----------SETLVEVM   72 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc---EEEEEeecchhh---hhcc-----------hhh-----------HHHHHHHH
Confidence            4799999999999999999999997   899999987531   1100           001           13456778


Q ss_pred             HHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccC
Q 010917          140 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG  180 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG  180 (497)
                      ++.||++++++.++.+....   .++.+++|+++.+|.||+|||
T Consensus        73 ~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          73 NAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            88999999999999987654   268889999999999999998

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.30  E-value=1.3e-11  Score=93.96  Aligned_cols=84  Identities=23%  Similarity=0.342  Sum_probs=70.8

Q ss_pred             CCCCCCCceeeeccccCCCCcceeeEEeecCCC--cEEE-EccCC-CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHh
Q 010917          389 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIE-IGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  464 (497)
Q Consensus       389 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  464 (497)
                      .+|..+|||||+||+..       +|++|....  +++. .++.+ .+|..+|+++|+++|++. +|.++++..+++|++
T Consensus         3 ~~y~~vP~FWSdQ~d~~-------iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~-vn~~~~~~~~rrli~   74 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNARDFAPLRRLLA   74 (97)
T ss_dssp             CCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEeccCCCe-------eEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEE-eCCHHHHHHHHHHHH
Confidence            47999999999999975       999998764  3344 34554 679999999999999985 899999999999999


Q ss_pred             CCCCCChhhhcCCCcH
Q 010917          465 SQPFVDKAKLQQASSV  480 (497)
Q Consensus       465 ~~~~~~~~~~~~~~~~  480 (497)
                      .+..++++.|.|+..=
T Consensus        75 ~~~~~~~~~LaD~~~~   90 (97)
T d1d7ya3          75 VGAKPDRAALADPATD   90 (97)
T ss_dssp             TTCCCCHHHHHSSCCH
T ss_pred             CCCCCCHHHhcCCCCC
Confidence            9999999999886543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=6.6e-12  Score=106.62  Aligned_cols=122  Identities=20%  Similarity=0.220  Sum_probs=88.3

Q ss_pred             CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCc---------------------
Q 010917          183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD---------------------  241 (497)
Q Consensus       183 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~---------------------  241 (497)
                      |+ .|++||.+.+++++..     +.+......+++|+|||||++|+|+|..+++.|.+                     
T Consensus         2 Pr-~p~IpG~d~~~V~~a~-----d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~   75 (162)
T d1ps9a2           2 PR-TPPIDGIDHPKVLSYL-----DVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQA   75 (162)
T ss_dssp             EC-CCCCBTTTSTTEEEHH-----HHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSG
T ss_pred             CC-CCCCCCCCCCCeEEHH-----HHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhh
Confidence            44 4668999999998742     23334456789999999999999999999998864                     


Q ss_pred             ----------------EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEE
Q 010917          242 ----------------TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STID  304 (497)
Q Consensus       242 ----------------Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~  304 (497)
                                      ++++..........++..........++..||++++++++.+++.  ++..  +...+. ++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~~g~e~~i~  151 (162)
T d1ps9a2          76 GGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVINGETQVLA  151 (162)
T ss_dssp             GGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEE--EEETTEEEEEC
T ss_pred             cccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCE--EecCCeEEEEE
Confidence                            344443333333335555666778889999999999999999973  4432  222222 3589


Q ss_pred             cCEEEEeccC
Q 010917          305 ADTIVIGIGA  314 (497)
Q Consensus       305 ~D~vv~a~G~  314 (497)
                      ||.||+|+|.
T Consensus       152 aD~Vv~A~Gq  161 (162)
T d1ps9a2         152 VDNVVICAGQ  161 (162)
T ss_dssp             CSEEEECCCE
T ss_pred             CCEEEECCCC
Confidence            9999999995

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.28  E-value=6.5e-12  Score=100.48  Aligned_cols=93  Identities=19%  Similarity=0.298  Sum_probs=74.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+.+|..|+++|.   +|||+++.+.....       . +     ...+           .....+.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~~l~~-------~-~-----~~~~-----------~~~~~~~   81 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLMSR-------A-A-----PATL-----------ADFVARY   81 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------T-S-----CHHH-----------HHHHHHH
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccc---eEEEEeeccccccc-------c-C-----CHHH-----------HHHHHHH
Confidence            35799999999999999999999987   89999998763110       0 0     0000           1234677


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG  180 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG  180 (497)
                      +++.||++++++.|+++..  ..+++++|+++++|.+|+|+|
T Consensus        82 l~~~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          82 HAAQGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHTTTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred             HHHCCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence            8889999999999988764  578899999999999999998

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.27  E-value=1.6e-12  Score=118.87  Aligned_cols=122  Identities=20%  Similarity=0.273  Sum_probs=75.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCCcc----cc---CCCC----------
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTKG----YL---FPLD----------  114 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-------~~~~l~~~----~l---~~~~----------  114 (497)
                      +++||+||||||||++||..|+++|+   +|+|||+.+...-       .+......    .+   ....          
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI   77 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhh
Confidence            36899999999999999999999998   8999999875321       00000000    00   0000          


Q ss_pred             -------------CCCC--CCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC---EEEECCCcEEEec
Q 010917          115 -------------KKPA--RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYG  173 (497)
Q Consensus       115 -------------~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d  173 (497)
                                   ....  ...+......   ....+.+.+.+++.|++++.+++|+.+..++.   .+.+++++.+.+|
T Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~  157 (251)
T d2i0za1          78 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN  157 (251)
T ss_dssp             SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred             hhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecC
Confidence                         0000  0000000000   00011123445678999999999999987654   3678899999999


Q ss_pred             cEEeccCCCC
Q 010917          174 SLIVATGCTA  183 (497)
Q Consensus       174 ~lvlAtG~~~  183 (497)
                      +||+|||...
T Consensus       158 ~vI~AtGg~S  167 (251)
T d2i0za1         158 HVVIAVGGKS  167 (251)
T ss_dssp             CEEECCCCSS
T ss_pred             eEEEccCCcc
Confidence            9999999764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.24  E-value=3.5e-12  Score=110.48  Aligned_cols=108  Identities=20%  Similarity=0.236  Sum_probs=78.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .+||||||||++|+++|..|++.++ +.+|||||+++.+..  +.+......... ....            .......+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~~~--~~~~~~~~~~~~-~~~~------------~~~~~~~~   65 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDYYT--CYLSNEVIGGDR-KLES------------IKHGYDGL   65 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCEEC--STTHHHHHHTSS-CGGG------------GEECSHHH
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCcccc--ccccccccchhh-hhhh------------hhhhhhhc
Confidence            4799999999999999999999986 779999999875322  222211111100 0000            12233455


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ...++.+..+ .+..++...+.+.+.+++.++||+||+|||..+.
T Consensus        66 ~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~  109 (186)
T d1fcda1          66 RAHGIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELI  109 (186)
T ss_dssp             HTTTEEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             cccceeEeee-eeEeeeeccceeecccceeeccceEEEEeccccc
Confidence            6678888764 7778888888999999999999999999998876

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.24  E-value=1.3e-10  Score=105.80  Aligned_cols=160  Identities=21%  Similarity=0.287  Sum_probs=111.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..+                                           
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            5899999999999999999999999999987432110                                           


Q ss_pred             -----------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917          255 -----------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  311 (497)
Q Consensus       255 -----------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a  311 (497)
                                             .....+.+.+.+.+++.||+++++++|+++... ++.+..+.+++|+++.+|.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEc
Confidence                                   000224455677788899999999999999864 66777889999999999999999


Q ss_pred             ccCcCCC---------cchhhcCCcccC---CCEEec-----CCCCCCCCcEEEeccccccCCccCCcccccccHHHHHH
Q 010917          312 IGAKPTV---------SPFERVGLNSSV---GGIQVD-----GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  374 (497)
Q Consensus       312 ~G~~p~~---------~~~~~~gl~~~~---g~i~vd-----~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~  374 (497)
                      +|.....         .+++..+.....   ..+.++     ....+..|++|.+|++........|.     ....|..
T Consensus       163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~-----~~~~a~~  237 (251)
T d2i0za1         163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGY-----NITSALV  237 (251)
T ss_dssp             CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTH-----HHHHHHH
T ss_pred             cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchH-----HHHHHHH
Confidence            9975322         245666655421   111121     22224779999999998654332222     2344666


Q ss_pred             HHHHHHHHH
Q 010917          375 SAQHCIKAL  383 (497)
Q Consensus       375 ~g~~~a~~i  383 (497)
                      .|+.++..+
T Consensus       238 ~G~~a~~~~  246 (251)
T d2i0za1         238 TGRIAGTTA  246 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            677666654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.23  E-value=9e-12  Score=101.55  Aligned_cols=95  Identities=17%  Similarity=0.312  Sum_probs=74.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|++.|.   +|+|+|+.+.. +.     . .+      ...+           .....+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~---~Vtvie~~~~~-l~-----~-~~------~~~~-----------~~~~~~~   86 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM---HVTLLDTAARV-LE-----R-VT------APPV-----------SAFYEHL   86 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSST-TT-----T-TS------CHHH-----------HHHHHHH
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc---ceeeeeecccc-cc-----c-cc------chhh-----------hhhhhhc
Confidence            45899999999999999999999987   89999998763 11     0 00      0000           1234567


Q ss_pred             HHHcCcEEEeCCcEEEEecCC-----CEEEECCCcEEEeccEEeccC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATG  180 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~-----~~v~~~~g~~i~~d~lvlAtG  180 (497)
                      +++.||+++++++|+.++...     ..+.+++|+++++|.||+|+|
T Consensus        87 ~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          87 HREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            788999999999999997643     247789999999999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.21  E-value=5.2e-12  Score=120.87  Aligned_cols=111  Identities=11%  Similarity=0.182  Sum_probs=66.1

Q ss_pred             HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe--CCCcEEEcCEEEEeccCc--------CCCcchh-hc--CCcccCC
Q 010917          265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGSTIDADTIVIGIGAK--------PTVSPFE-RV--GLNSSVG  331 (497)
Q Consensus       265 ~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~--~~g~~i~~D~vv~a~G~~--------p~~~~~~-~~--gl~~~~g  331 (497)
                      ...+++.|++++++++|++|+.++++....+..  .++++++||.||+|++..        |...... +.  .+.....
T Consensus       242 ~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~  321 (370)
T d2iida1         242 TAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQ  321 (370)
T ss_dssp             HHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTH
T ss_pred             HHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCccc
Confidence            344577899999999999999765543323333  344689999999998632        2211100 00  0000000


Q ss_pred             CEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          332 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       332 ~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      ....+..+.+...+||.+||++..+..         .+..|+..|..||.+|-
T Consensus       322 ~~~~~~~~~~~~g~v~~aGd~~~~~~~---------~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         322 FQHFSDPLTASQGRIYFAGEYTAQAHG---------WIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHHHHCCBTTEEECSGGGSSSSS---------CHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhcccCCEEEecccccCCCc---------ccHHHHHHHHHHHHHHH
Confidence            011112233344679999998875431         35568889999998874

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2e-13  Score=122.35  Aligned_cols=174  Identities=14%  Similarity=0.136  Sum_probs=95.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCCc-----------------cccCCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTK-----------------GYLFPLDKKPAR  119 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~---~~~~~l~~-----------------~~l~~~~~~~~~  119 (497)
                      ++||+||||||||++||..+++.|.   +|+|||++..-.   +..+.-++                 .+.........+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~---kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~   78 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN   78 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCccccc
Confidence            5899999999999999999999998   899999864210   00000000                 000000000000


Q ss_pred             CCCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCC-
Q 010917          120 LPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-  195 (497)
Q Consensus       120 ~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~-  195 (497)
                      +......   .-..........+++.+|++..+..... .  ...+ ..++..+.++.+++|||+.|. .|.+|+.+.- 
T Consensus        79 ~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~-~--~~~~-~~~~~~~~~~~~iiatG~~p~-ip~ip~~~~l~  153 (217)
T d1gesa1          79 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFV-D--AKTL-EVNGETITADHILIATGGRPS-HPREPANDNIN  153 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEE-E--TTEE-EETTEEEEEEEEEECCCEEEC-CCEEESCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccc-e--eeee-cCCCceeeeeeeeeecCcccc-CCCCCCcCCcc
Confidence            0000000   0000000122345677999887654332 2  2222 235667999999999999987 4554443211 


Q ss_pred             ----cEEEecC-HHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEE
Q 010917          196 ----GVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  243 (497)
Q Consensus       196 ----gv~~~~~-~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vt  243 (497)
                          ++.+... ....+...  ....++|.++|+|.+|+|+|..+.+.|.+|+
T Consensus       154 l~~~gv~~~~~~~i~~d~~~--~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         154 LEAAGVKTNEKGYIVVDKYQ--NTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             HHHHTCCBCTTSCBCCCTTS--BCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             cccccEEEcCCccEeeCchh--ccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence                2211110 00001110  0134689999999999999999999998775

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.19  E-value=5.5e-15  Score=136.53  Aligned_cols=33  Identities=27%  Similarity=0.562  Sum_probs=31.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      |||+||||||||++||.++++.|.   +|+|||++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~---~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNA---KVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCC
Confidence            799999999999999999999998   899999875

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.18  E-value=1.5e-11  Score=97.62  Aligned_cols=94  Identities=21%  Similarity=0.280  Sum_probs=70.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      .+++++|||||+.|+.+|..|++.|.   +|||+|+.+...   |..        +   .++           .+...+.
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~---~Vtlve~~~~il---~~~--------d---~~~-----------~~~l~~~   71 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTY--------D---SEL-----------TAPVAES   71 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTS--------C---HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc---ceEEEeeecccc---ccc--------c---chh-----------HHHHHHH
Confidence            34799999999999999999999997   899999987531   000        0   001           1345677


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATG  180 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG  180 (497)
                      +++.||+++++++|++++.........++  +++++|.+++|||
T Consensus        72 l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          72 LKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             HHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            88999999999999999754433333333  4799999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.8e-10  Score=91.41  Aligned_cols=109  Identities=19%  Similarity=0.312  Sum_probs=88.9

Q ss_pred             CcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917          195 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       195 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                      .|++++.   .++   ..+.++|+|+|||+|.+|+|.|..|++.+.+|++++|++.+.   .++.+.+.+.+..+..+|.
T Consensus        12 kgV~yca---~cD---~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i~   82 (126)
T d1trba2          12 RGVSACA---TSD---GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNII   82 (126)
T ss_dssp             TTEESCH---HHH---GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEE
T ss_pred             CCEEEEE---ecc---hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhccccee
Confidence            5677652   222   235689999999999999999999999999999999998764   3677788888888889999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCCC------cEEEcCEEEEecc
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKLEDG------STIDADTIVIGIG  313 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~~~g------~~i~~D~vv~a~G  313 (497)
                      ++.++.+.++..+ +..+..+++.|.      +++++|-|++++|
T Consensus        83 ~~~~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          83 LHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EecceEEEEEECC-CCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            9999999999853 445777877653      3699999999987

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.15  E-value=4.8e-11  Score=95.02  Aligned_cols=96  Identities=18%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..|++......+|+++++.+...   |.+.           .++           ...+.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il---~~~d-----------~~~-----------~~~~~~~l   72 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---RGFD-----------SEL-----------RKQLTEQL   72 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---TTSC-----------HHH-----------HHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc---cccc-----------chh-----------hHHHHHHH
Confidence            4799999999999999998877643234899999876531   0000           001           13456778


Q ss_pred             HHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccC
Q 010917          140 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG  180 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG  180 (497)
                      ++.||++++++.++++....   ..+.+++|+++++|.+|+|||
T Consensus        73 ~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          73 RANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             hhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            89999999999999997543   268899999999999999999

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.15  E-value=6.5e-11  Score=109.57  Aligned_cols=71  Identities=20%  Similarity=0.326  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccCCC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG  332 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~  332 (497)
                      ..+...+.+.+++.|++++.+++|++|+.+  +....|.+++| ++.||.||+|+|.... .+++.+|+...++.
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~g-~i~a~~vV~AaG~~s~-~l~~~~G~~~~~~~  221 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQLGLNNADGK  221 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHHTTCCCCSSC
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEee--cceEEEecCCe-EEEcCEEEECCCccHH-HHHhhcCCCccccc
Confidence            356677788889999999999999999854  34457888777 6999999999998754 67888888765444

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.14  E-value=9.1e-12  Score=117.28  Aligned_cols=111  Identities=18%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcchhhcCCcc--------cCC
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS--------SVG  331 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~--------~~g  331 (497)
                      ..+.+..++.|+++++++.|++|+..+++. ..+...++  ++++||.||+|+|......++.++.-..        ..+
T Consensus       223 ~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~-~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~  301 (347)
T d2ivda1         223 VLIDALAASLGDAAHVGARVEGLAREDGGW-RLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLG  301 (347)
T ss_dssp             HHHHHHHHHHGGGEESSEEEEEEECC--CC-EEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTT
T ss_pred             HHHHHHHHHhhcccccCCEEEEEEEeCCeE-EEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecC
Confidence            344455566689999999999998764443 22333344  4799999999998542222332221110        011


Q ss_pred             C---EEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          332 G---IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       332 ~---i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      .   +...+...++.|++|++||.....           .+..+..+|+.+|+.|.
T Consensus       302 ~~~~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         302 HLERVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHHHHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             cccceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence            1   111122236789999999986532           34567888888888775

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.13  E-value=3.5e-10  Score=106.35  Aligned_cols=57  Identities=11%  Similarity=0.167  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeccC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGA  314 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vv~a~G~  314 (497)
                      ..+...+.+.+.+.|+++++++.++++..++++++.+|...+  +  .++.++.||+|+|-
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCc
Confidence            345666777788899999999999998777778888887643  2  26889999999984

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.10  E-value=1.1e-10  Score=93.06  Aligned_cols=95  Identities=17%  Similarity=0.314  Sum_probs=73.0

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      ...++++|||||+.|+..|..|++.|.   +||++++.+...   |.+.           .++           ...+.+
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~---~Vtiv~~~~~ll---~~~d-----------~ei-----------~~~l~~   71 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAVD-----------EQV-----------AKEAQK   71 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSC-----------HHH-----------HHHHHH
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCC---ceEEEEeecccC---Cccc-----------chh-----------HHHHHH
Confidence            345899999999999999999999997   899999886531   1110           000           134567


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCC--EEEECCC---cEEEeccEEeccC
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATG  180 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g---~~i~~d~lvlAtG  180 (497)
                      ++++.|+++++++++++++..+.  ++++.++   +++.+|+|++|+|
T Consensus        72 ~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          72 ILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            88899999999999999987665  4555443   5789999999998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.09  E-value=2.6e-11  Score=113.24  Aligned_cols=117  Identities=20%  Similarity=0.281  Sum_probs=76.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCC-CCCC----c-cccCCCC-------CCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YER-PALT----K-GYLFPLD-------KKPARL  120 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~-~~l~----~-~~l~~~~-------~~~~~~  120 (497)
                      +...||+|||||++||++|++|++.|+   +++|+|+.+...    +.+ |.+.    . .+.....       .....+
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~---~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~   81 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERY   81 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCcccc
Confidence            346799999999999999999999998   899999987542    111 1110    0 0000000       001111


Q ss_pred             CCCccccCCCCCCCCHhHHHHcCc--EEEeCCcEEEEecC--C--CEEEECCCcEEEeccEEeccCCC
Q 010917          121 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIE--K--QTLITNSGKLLKYGSLIVATGCT  182 (497)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~--~--~~v~~~~g~~i~~d~lvlAtG~~  182 (497)
                      +.     +.+...++..+.+++++  .++++++|+++..+  .  -+|.+.++.++++|+||+|||..
T Consensus        82 p~-----~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          82 AS-----QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             CB-----HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             Cc-----cchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            10     11112334555667787  58999999999642  2  27888899999999999999953

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.09  E-value=1.7e-10  Score=91.64  Aligned_cols=95  Identities=17%  Similarity=0.275  Sum_probs=73.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..|.+.+....+|||+++.+...            +..  ..++           .....+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL------------~~~--d~~~-----------~~~l~~~l   74 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL------------RGF--DHTL-----------REELTKQL   74 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS------------TTS--CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh------------ccc--chHH-----------HHHHHHHH
Confidence            4799999999999999999888876455899999876531            100  0001           13456788


Q ss_pred             HHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEecc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVAT  179 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAt  179 (497)
                      ++.||++++++++++++...   ..+++++|+++++|.||+|.
T Consensus        75 ~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          75 TANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            99999999999999997532   36889999999999999983

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.08  E-value=1.2e-10  Score=93.29  Aligned_cols=90  Identities=19%  Similarity=0.294  Sum_probs=70.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..|++.|.   +|||+++.+...    ++..           .+           .....+++
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~l~----~~d~-----------~~-----------~~~~~~~l   82 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY---HVKLIHRGAMFL----GLDE-----------EL-----------SNMIKDML   82 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC---EEEEECSSSCCT----TCCH-----------HH-----------HHHHHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc---eEEEEecccccc----CCCH-----------HH-----------HHHHHHHH
Confidence            3799999999999999999999997   899999886531    0110           01           12356778


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC  181 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~  181 (497)
                      ++.|+++++++++.+++.+.  + +.+++.+++|.+|+|+|.
T Consensus        83 ~~~GV~~~~~~~v~~~~~~~--v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          83 EETGVKFFLNSELLEANEEG--V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHTTEEEECSCCEEEECSSE--E-EETTEEEECSCEEEECCE
T ss_pred             HHCCcEEEeCCEEEEEeCCE--E-EeCCCEEECCEEEEEEEe
Confidence            89999999999999886543  3 456778999999999994

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.07  E-value=2.6e-09  Score=98.75  Aligned_cols=70  Identities=17%  Similarity=0.421  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcccC
Q 010917          257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV  330 (497)
Q Consensus       257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~  330 (497)
                      +..+...+.+.+++.|++++.++.|.+++..++ .+ .|.+++| ++.||.||+|+|...+ .++..+|+....
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~v-~V~t~~g-~i~a~~VViAaG~~s~-~l~~~lg~~~~~  218 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPD-SV-KIETANG-SYTADKLIVSMGAWNS-KLLSKLNLDIPD  218 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSS-CE-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGTEECCT
T ss_pred             ccccccccccccccccccccCCcEEEEEEEECC-EE-EEEECCc-EEEcCEEEECCCCcch-hhHHhcCCcccc
Confidence            346777888889999999999999999997644 44 5788777 5999999999997654 677788776543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.3e-10  Score=111.70  Aligned_cols=113  Identities=13%  Similarity=0.145  Sum_probs=68.8

Q ss_pred             HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc--------CCCc-chhhcCCc-ccCCC
Q 010917          263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK--------PTVS-PFERVGLN-SSVGG  332 (497)
Q Consensus       263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~--------p~~~-~~~~~gl~-~~~g~  332 (497)
                      ...+.+++.|+++++++.|.+|...+ +.+ .|++.||+++++|.||+|++..        |... ...+..-. ...+.
T Consensus       212 ~~~~l~~~~g~~i~~~~~v~~I~~~~-~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~  289 (383)
T d2v5za1         212 VSERIMDLLGDRVKLERPVIYIDQTR-ENV-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGI  289 (383)
T ss_dssp             HHHHHHHHHGGGEEESCCEEEEECSS-SSE-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTH
T ss_pred             HHHHHHHHcCCeEEecCcceEEEecC-CeE-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCc
Confidence            34455677899999999999998653 444 5889999999999999998642        1110 01111000 01111


Q ss_pred             -EEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          333 -IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       333 -i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                       -...........+|+.+|+.......        ..+..|..+|+.+|..++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~~  335 (383)
T d2v5za1         290 LTQYGRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREILH  335 (383)
T ss_dssp             HHHHGGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHHH
Confidence             11122334455678888976543221        1455688888888887753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=2.3e-10  Score=91.63  Aligned_cols=94  Identities=16%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||+.|+.+|..|+++|.   +||++|+.+...      +. ++      ...+           .....++
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~---~Vtlie~~~~~l------~~-~~------d~~~-----------~~~~~~~   81 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPL------GV-YL------DKEF-----------TDVLTEE   81 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTT------TT-TC------CHHH-----------HHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHhhccce---EEEEEEecCccc------cc-cc------chhh-----------HHHHHHH
Confidence            45799999999999999999999998   899999986531      00 00      0000           1234677


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC-EEEECCCcEEEeccEEecc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ-TLITNSGKLLKYGSLIVAT  179 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~-~v~~~~g~~i~~d~lvlAt  179 (497)
                      +++.|+++++++++.+++.+++ ...+.+|+++++|.||+|.
T Consensus        82 l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          82 MEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             hhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            8889999999999999987654 3446788889999999983

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.04  E-value=2.6e-10  Score=90.31  Aligned_cols=92  Identities=14%  Similarity=0.189  Sum_probs=71.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+.+|..|++.|.   +|||+++.+...   +.+           ..++           .....+.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~il---~~~-----------d~~~-----------~~~~~~~l   73 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL---RKF-----------DESV-----------INVLENDM   73 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC---TTS-----------CHHH-----------HHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc---cceeeehhcccc---ccc-----------cHHH-----------HHHHHHHH
Confidence            5799999999999999999999987   899999986531   000           0011           13456778


Q ss_pred             HHcCcEEEeCCcEEEEecCC---CEEEECCCcEE-EeccEEecc
Q 010917          140 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLL-KYGSLIVAT  179 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i-~~d~lvlAt  179 (497)
                      ++.||++++++.+++++...   .++.+++|+.+ .||.||+|.
T Consensus        74 ~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          74 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            88999999999999997443   36888999877 589999983

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.04  E-value=5.5e-10  Score=102.25  Aligned_cols=138  Identities=22%  Similarity=0.372  Sum_probs=88.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc----------------------------------cC------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------FT------  257 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~----------------------------------~~------  257 (497)
                      .++|||+|+.|+.+|..+++.|.+|.++++.. +....                                  ++      
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            48999999999999999999999999999753 11000                                  00      


Q ss_pred             ------HHHHHHHHHHHHHCCcEEEcCCe-EE-----EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC-----Ccc
Q 010917          258 ------PSLAQRYEQLYQQNGVKFVKGAS-IK-----NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSP  320 (497)
Q Consensus       258 ------~~~~~~~~~~l~~~GV~i~~~~~-v~-----~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~-----~~~  320 (497)
                            ..+.+.+...+++.||+++.+.- ..     .+....+.........+++++.+|.||+|||.+|.     .+.
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~  161 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN  161 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred             hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence                  11233456667889999998742 11     11111011000111123457999999999999983     332


Q ss_pred             --hhhcCCcccCCCEEecCCCCCCCCcEEEeccccccC
Q 010917          321 --FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP  356 (497)
Q Consensus       321 --~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~  356 (497)
                        +++.++..+++.+.+|+..+|++.++|++||++...
T Consensus       162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~  199 (259)
T d1onfa1         162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK  199 (259)
T ss_dssp             SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred             cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence              345556667788999999999999999999998643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2e-10  Score=93.99  Aligned_cols=94  Identities=19%  Similarity=0.288  Sum_probs=72.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHH----cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  135 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~----~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (497)
                      .++++|||||+.|+.+|..|++    .|.   +|+++++++...      +.  .+     +.++           ....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~---~Vt~i~~~~~~l------~~--~~-----~~~~-----------~~~~   89 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT---EVIQLFPEKGNM------GK--IL-----PEYL-----------SNWT   89 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC---EEEEECSSSSTT------TT--TS-----CHHH-----------HHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC---EEEEecccccCC------cc--cC-----CHHH-----------HHHH
Confidence            4799999999999999998864    455   899999987531      00  00     0011           1234


Q ss_pred             HhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccC
Q 010917          136 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG  180 (497)
Q Consensus       136 ~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG  180 (497)
                      .+.+++.||++++++.|.+++.++.  .+++++|+++.+|.+|+|||
T Consensus        90 ~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          90 MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            6678889999999999999987654  68889999999999999999

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=9.4e-10  Score=94.99  Aligned_cols=112  Identities=30%  Similarity=0.459  Sum_probs=84.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +.+|||||||++|+.+|..|++.|. +..|+++++++..++...++...+...... ....           ........
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~   69 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKAT-AESL-----------YLRTPDAY   69 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSC-SGGG-----------BSSCHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCccccchhhhHHHHHHHHhhhh-hhhh-----------hhhhhhhh
Confidence            4799999999999999999999997 556777777777666654444322221111 1000           13445667


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ...+..+..+..+..++.+...+...++.++.+|.+++++|..|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~  114 (185)
T d1q1ra1          70 AAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPL  114 (185)
T ss_dssp             HHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEE
T ss_pred             cccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccC
Confidence            778888888889999999999999999999999999999998764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.03  E-value=2.1e-10  Score=100.18  Aligned_cols=134  Identities=20%  Similarity=0.216  Sum_probs=87.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  285 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  285 (497)
                      .++||+|||+|++|+++|..|+++|. +|+|+++.+.+...        ...............+.+..+.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            47899999999999999999999998 59999999876542        1234444555556667778877766542211


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch--h-h-cCCcc-cCCCEEec-CCCCCCCCcEEEeccccccCC
Q 010917          286 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--E-R-VGLNS-SVGGIQVD-GQFRTRMPGIFAIGDVAAFPL  357 (497)
Q Consensus       286 ~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~--~-~-~gl~~-~~g~i~vd-~~~~t~~~~iya~GD~~~~~~  357 (497)
                               ....+..+..+|.+++++|..+...+.  . . ..... ..+....+ ..++|+.+.+|++||++...+
T Consensus        83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~  151 (196)
T d1gtea4          83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN  151 (196)
T ss_dssp             ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC
T ss_pred             ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc
Confidence                     111222345578899999875433221  1 1 11111 12344444 468899999999999987543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.00  E-value=6.2e-10  Score=105.99  Aligned_cols=40  Identities=13%  Similarity=0.263  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      +..|+|+|||||+|||+||..|++.+. ..+|+|+|+.+..
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~i   41 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSP   41 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence            346899999999999999999998874 4589999999764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.00  E-value=1.1e-10  Score=110.09  Aligned_cols=103  Identities=12%  Similarity=0.089  Sum_probs=62.4

Q ss_pred             CcEEEcCCeEEEEEeCCCCc----EEEEEe-----CCCcEEEcCEEEEeccCcCCCc-------------chhhcCCccc
Q 010917          272 GVKFVKGASIKNLEAGSDGR----VAAVKL-----EDGSTIDADTIVIGIGAKPTVS-------------PFERVGLNSS  329 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~~----v~~v~~-----~~g~~i~~D~vv~a~G~~p~~~-------------~~~~~gl~~~  329 (497)
                      +.++++++.|++|+...++.    ...+..     .+++.+++|.||++++...-..             .+........
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            66788999999987654321    112222     2346799999999987422100             0100000000


Q ss_pred             CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      ++.+.+++.++|+.|+||++||+...+           .+..|..+|+.||..|+.
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHH
Confidence            112334456778999999999998643           345688888888888764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.99  E-value=5.5e-09  Score=100.73  Aligned_cols=117  Identities=18%  Similarity=0.267  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEeccCcCCC--cchhh
Q 010917          261 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPTV--SPFER  323 (497)
Q Consensus       261 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~~D~vv~a~G~~p~~--~~~~~  323 (497)
                      ..++.+..++.|+.+..+..+.++...+++.+..+...+               +....++..+++.|.+...  .+++.
T Consensus       144 ~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~  223 (380)
T d2gmha1         144 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKK  223 (380)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhh
Confidence            345555667788888888888887766666554443321               2346688888998876532  12232


Q ss_pred             cCCccc---CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          324 VGLNSS---VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       324 ~gl~~~---~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      ..+...   .+++.  .--+...+++..+||++++-++..+.     -+..|+..|+.||+.+.
T Consensus       224 ~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g~-----GI~~Am~SG~lAAeai~  280 (380)
T d2gmha1         224 FDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKIK-----GTHTAMKSGTLAAESIF  280 (380)
T ss_dssp             TTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTTB-----CHHHHHHHHHHHHHHHH
T ss_pred             hhhccccccccccc--cccccccCCeeEEeccccccchhhcC-----CeeeeeccHHHHHHHHH
Confidence            222211   11211  01123458999999999987665443     45567777777777664

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.97  E-value=3.6e-09  Score=100.00  Aligned_cols=98  Identities=20%  Similarity=0.236  Sum_probs=74.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  254 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  254 (497)
                      -.|+|||+|..|+-+|..|++.|.+|.|+++.+.....                                          
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~  103 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  103 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence            46999999999999999999999999999976321000                                          


Q ss_pred             ---------------------------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCC
Q 010917          255 ---------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  289 (497)
Q Consensus       255 ---------------------------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~  289 (497)
                                                                   .....+...+.+.+.++|+++++++.++++..+++
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~  183 (322)
T d1d4ca2         104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS  183 (322)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS
T ss_pred             HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccccccccc
Confidence                                                         00112344455666789999999999999887667


Q ss_pred             CcEEEEEeCC--C--cEEEcCEEEEeccC
Q 010917          290 GRVAAVKLED--G--STIDADTIVIGIGA  314 (497)
Q Consensus       290 ~~v~~v~~~~--g--~~i~~D~vv~a~G~  314 (497)
                      +++.++...+  +  ..+.++.||+|+|-
T Consensus       184 G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG  212 (322)
T d1d4ca2         184 GKVTGVLVKGEYTGYYVIKADAVVIAAGG  212 (322)
T ss_dssp             SCCCEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             ccccceEEEeecccEEEEeCCeEEEcCCC
Confidence            8877776532  2  25899999999983

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.97  E-value=6.3e-10  Score=89.00  Aligned_cols=93  Identities=19%  Similarity=0.249  Sum_probs=70.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||+.|+..|..|++.|.   +|+++++.+...   +.+..           ++           .....+.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~---~vt~i~~~~~~l---~~~d~-----------~~-----------~~~~~~~l   73 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKDN-----------ET-----------RAYVLDRM   73 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCSH-----------HH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch---hheEeeccchhh---ccccc-----------ch-----------hhhhhhhh
Confidence            4799999999999999999999987   899999886431   11100           00           12456778


Q ss_pred             HHcCcEEEeCCcEEEEecCCC----EE---EECCCcEEEeccEEeccC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ----TL---ITNSGKLLKYGSLIVATG  180 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~----~v---~~~~g~~i~~d~lvlAtG  180 (497)
                      ++.++++++++++..++....    .+   ...+++++++|.+|+|+|
T Consensus        74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            899999999999999986542    11   223456799999999998

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.8e-09  Score=85.29  Aligned_cols=107  Identities=26%  Similarity=0.414  Sum_probs=81.4

Q ss_pred             CcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917          195 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       195 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                      .|+.++.   .++   ..+.++|+|+|||+|.+|+|.|..|++...+|++++|++.+..   .+...+   +..+..+|+
T Consensus        15 kGV~yca---~cD---~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~~~---~~~~~~~I~   82 (126)
T d1fl2a2          15 KGVTYCP---HCD---GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVLQD---KLRSLKNVD   82 (126)
T ss_dssp             TTEESCH---HHH---GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHHHH---HHHTCTTEE
T ss_pred             CCEEEEE---ecC---hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccccc---cccccccee
Confidence            5777762   222   2457899999999999999999999999999999999987643   333222   223345699


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeccC
Q 010917          275 FVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGA  314 (497)
Q Consensus       275 i~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vv~a~G~  314 (497)
                      +++++++.++..+ ++.+..+++.+   |  +++++|.+++++|.
T Consensus        83 v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          83 IILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             EESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             EEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            9999999999854 45677777654   4  36999999999884

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=2.7e-12  Score=116.39  Aligned_cols=153  Identities=12%  Similarity=0.103  Sum_probs=84.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCC----CCcEEEEcCCCCCCCCCCCCCccccC-CCCCCCCCCCCCccccCCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMA----DGRLCIVSKEAYAPYERPALTKGYLF-PLDKKPARLPGFHTCVGSGGERQ  134 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~----~~~V~lie~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~  134 (497)
                      +++|+|||||||||+||+.|+++|++    ..+|+|+|+.+...-.    .. +.. +.......+           ...
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~----~~-~gi~p~~~~~~~~-----------~~~   65 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL----VR-SGVAPDHPKIKSI-----------SKQ   65 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH----HH-HTSCTTCTGGGGG-----------HHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe----ee-eccCcccccchhh-----------hhh
Confidence            36999999999999999999999852    2379999998764210    00 001 111111110           122


Q ss_pred             CHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc----EEEecCHHHH---H
Q 010917          135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG----VHYIRDVADA---D  207 (497)
Q Consensus       135 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g----v~~~~~~~~~---~  207 (497)
                      ...++...+++++.++++.   ..   +..++ ....||++++|||+.+..+.. ++...+.    ...+......   .
T Consensus        66 ~~~~~~~~g~~~~~~~~v~---~~---~~~~~-~~~~~~~v~~atGa~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  137 (239)
T d1lqta2          66 FEKTAEDPRFRFFGNVVVG---EH---VQPGE-LSERYDAVIYAVGAQSRGVPT-PGLPFDDQSGTIPNVGGRINGSPNE  137 (239)
T ss_dssp             HHHHHTSTTEEEEESCCBT---TT---BCHHH-HHHHSSEEEECCCCCEECCCC-TTSCCBTTTTBCCEETTEETTCSSE
T ss_pred             hhhhhccCCceEEEEEEec---cc---cchhh-hhccccceeeecCCCcccccc-ccccccccccchhhhhhhhcccccc
Confidence            2345566789999886652   10   10010 123699999999987654322 2221111    1111100000   0


Q ss_pred             HHHHhhccCCeEEEEcCCHHHHHHHHHHH
Q 010917          208 ALISSLEKAKKVVVVGGGYIGMEVAAAAV  236 (497)
Q Consensus       208 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~  236 (497)
                      ........+++++|+|+|..+++++..+.
T Consensus       138 ~~~~~~~~g~~~vv~g~g~~a~d~a~~~v  166 (239)
T d1lqta2         138 YVVGWIKRGPTGVIGTNKKDAQDTVDTLI  166 (239)
T ss_dssp             EECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred             ccceeecCCCEEEEeCCCchHHHHHHHHH
Confidence            00001124678888899999999988654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.93  E-value=4.9e-11  Score=107.33  Aligned_cols=107  Identities=14%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-CCCCCCCCccccCCCCCCCCHhHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-KPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      +||+|||||||||+||.+|++.+. ..+|+|+|+.+... .   +.. +..+... ....+           ......++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~g-G---~~~-~~~~~~~~~~~~~-----------~~~~~~~~   64 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPF-G---LVR-FGVAPDHPEVKNV-----------INTFTQTA   64 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSC-T---HHH-HTSCTTCGGGGGH-----------HHHHHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCC-c---eeh-hhccccccccccc-----------hhhhhhhh
Confidence            599999999999999999998864 45999999987642 0   000 0001000 00000           12234556


Q ss_pred             HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG  191 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g  191 (497)
                      .+.+++++.++.|.   .+   +...+ -.-.||.+++|||+.+...+..++
T Consensus        65 ~~~~~~~~~~~~v~---~~---~~~~~-l~~~~d~v~~a~Ga~~~~~~~~~~  109 (230)
T d1cjca2          65 RSDRCAFYGNVEVG---RD---VTVQE-LQDAYHAVVLSYGAEDKSRPIDPS  109 (230)
T ss_dssp             TSTTEEEEBSCCBT---TT---BCHHH-HHHHSSEEEECCCCCEECCCCCTT
T ss_pred             hcCCeeEEeeEEeC---cc---ccHHH-HHhhhceEEEEeeccccccccccc
Confidence            67799998876651   11   10000 012689999999997654444443

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=3e-10  Score=100.08  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=67.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCC-ccccCCCCCCCCCCCCCccccCCCCC-CCCHh
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT-KGYLFPLDKKPARLPGFHTCVGSGGE-RQTPE  137 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~  137 (497)
                      .|||+||||||||++||..+++.|.   ++.||+++.......+.-+ .+.... ......+      ..+... +.+..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~---ktllit~~~~~ig~~~cnp~~gg~~k-g~l~rei------d~kG~av~a~ra   71 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVMMPFLPPKPPFPPG-SLLERAY------DPKDERVWAFHA   71 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCCCSCCCTT-CHHHHHC------CTTCCCHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC---cEEEEEeccchhcccccCCccccCCC-cceeeee------eccchhhhhHHH
Confidence            4899999999999999999999998   8999998632211111000 000000 0000000      000000 00111


Q ss_pred             HH-----HHcCcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCCC
Q 010917          138 WY-----KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT  182 (497)
Q Consensus       138 ~~-----~~~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~~  182 (497)
                      ++     ...+++++.+ +|..+..++.   .|.+.+|.++.++.||||||..
T Consensus        72 Q~k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          72 RAKYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             HHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            11     2348888874 7777766554   3678899999999999999964

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=6e-09  Score=88.55  Aligned_cols=89  Identities=17%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc----------cCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~----------~~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      ..+|+|+|||+|+.|++.|..|+++|++|+++++.+.+....          ...++.+++.+.+++.||++++++.|+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence            467999999999999999999999999999999987653321          1235677888889999999999987632


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                                     + ....+|.||+|+|..|..
T Consensus       121 ---------------~-~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         121 ---------------D-QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             ---------------S-SSCCSSEEEECCCEECCT
T ss_pred             ---------------c-ccccceeEEEeecCCCcc
Confidence                           1 124689999999998864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.92  E-value=9.8e-10  Score=87.20  Aligned_cols=92  Identities=15%  Similarity=0.318  Sum_probs=68.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+.+|..|++.|.   +|||+++.+...   +.+        +   .++           ...+.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~il---~~~--------d---~~~-----------~~~l~~~   72 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGF--------E---KQM-----------AAIIKKR   72 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTS--------C---HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCccceeeeeeeccccc---EEEEEEecceec---ccc--------c---chh-----------HHHHHHH
Confidence            34799999999999999999999997   899999987531   000        0   001           1345677


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEEC-CC--cEEEeccEEec
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVA  178 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~-~g--~~i~~d~lvlA  178 (497)
                      +++.||++++++.+++++....  .+.+. +|  +++.+|.|++.
T Consensus        73 l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          73 LKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             HHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            8899999999999999976553  34433 33  46899999874

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=1.5e-09  Score=86.62  Aligned_cols=93  Identities=17%  Similarity=0.227  Sum_probs=66.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+..|..|++.|.   +|||++++..++    .+.           .++           ...+.+.
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~---~Vtii~~~~~l~----~~D-----------~~~-----------~~~l~~~   69 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILLR----GFD-----------QDM-----------ANKIGEH   69 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSST----TSC-----------HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC---eEEEEEechhhc----cCC-----------HHH-----------HHHHHHH
Confidence            34799999999999999999999997   899998653211    000           001           1345677


Q ss_pred             HHHcCcEEEeCCcEEEEecCC----C--EEEECCC-----cEEEeccEEeccC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEK----Q--TLITNSG-----KLLKYGSLIVATG  180 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~----~--~v~~~~g-----~~i~~d~lvlAtG  180 (497)
                      +++.||++++++.|+++....    .  .++...+     ..+.+|.|++|+|
T Consensus        70 l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          70 MEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            889999999999988875321    1  3333322     2457999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.2e-09  Score=87.62  Aligned_cols=93  Identities=17%  Similarity=0.226  Sum_probs=68.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++++|||||+.|+.+|..|++.|.   +||++++.+...   +.+           ..++           .....+.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~-----------d~~~-----------~~~~~~~l   73 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSF-----------DSMI-----------STNCTEEL   73 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTS-----------CHHH-----------HHHHHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc---EEEEEeeccccc---cch-----------hhHH-----------HHHHHHHH
Confidence            4799999999999999999999997   899999987531   000           0001           13456778


Q ss_pred             HHcCcEEEeCCcEEEEecCCCE--EE---ECCCc------EEEeccEEeccC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQT--LI---TNSGK------LLKYGSLIVATG  180 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~~--v~---~~~g~------~i~~d~lvlAtG  180 (497)
                      ++.||+++++++++++......  +.   ...|+      .+.+|.|++|+|
T Consensus        74 ~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          74 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            8999999999999999765432  22   12332      467999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.4e-09  Score=86.86  Aligned_cols=92  Identities=16%  Similarity=0.317  Sum_probs=68.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      .+++++|||||+.|+.+|..|++.|.   +|||+++.+...   |.+.           .++           ...+.+.
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~---~Vtii~~~~~~l---~~~d-----------~ei-----------~~~l~~~   73 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASMD-----------GEV-----------AKATQKF   73 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSSC-----------HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc---ceeEEEeccccc---hhhh-----------hhh-----------HHHHHHH
Confidence            34799999999999999999999998   899999987531   1100           001           1345677


Q ss_pred             HHHcCcEEEeCCcEEEEecCC--CE--EEECCC-----cEEEeccEEec
Q 010917          139 YKEKGIEMIYQDPVTSIDIEK--QT--LITNSG-----KLLKYGSLIVA  178 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~--~~--v~~~~g-----~~i~~d~lvlA  178 (497)
                      +++.||+++++++|.++....  ..  +++.++     +++.+|.|++|
T Consensus        74 l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          74 LKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             HHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            889999999999999987543  23  344332     37899999987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.88  E-value=1.3e-09  Score=87.22  Aligned_cols=94  Identities=14%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+.|+.+|..+++.|.   +||++++.+...            +..  ..++           ...+.+.
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~---~Vtive~~~~il------------~~~--d~~~-----------~~~l~~~   76 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLM------------QGA--DRDL-----------VKVWQKQ   76 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSS------------TTS--CHHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCC---EEEEEEeecccc------------ccc--hhhH-----------HHHHHHH
Confidence            35799999999999999999999997   899999986531            000  0000           1345677


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECC--C--cEEEeccEEeccC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATG  180 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~--g--~~i~~d~lvlAtG  180 (497)
                      +++.|+++++++++.++.....  .+.+.+  +  +++++|.|++|+|
T Consensus        77 l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          77 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            7889999999999999876554  344432  2  4699999999999

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=7.1e-10  Score=96.36  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=69.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEW  138 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  138 (497)
                      .+||+||||||+||+||.+|++.|.   +++|||++......        ..  ......+++++. ..+..........
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~---~v~iie~~~~~g~~--------~~--~~~i~~~~~~~~~~~~~~~~~~~~~~   71 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--------TT--TTEVENWPGDPNDLTGPLLMERMHEH   71 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTTGGG--------GG--CSBCCCSTTCCSSCBHHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---ceEEEEeecccccc--------cc--cchhhhhhccccccchHHHHHHHHHH
Confidence            4799999999999999999999998   89999986542110        00  000111111111 0001111223344


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  184 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~  184 (497)
                      ..+.++++..+ +|+.++....  .+.. ....+..+.+++++|..++
T Consensus        72 ~~~~~~~~~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          72 ATKFETEIIFD-HINKVDLQNRPFRLNG-DNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             HHHTTCEEECC-CEEEEECSSSSEEEEE-SSCEEEEEEEEECCCEEEC
T ss_pred             HHhcCcEEecc-eeEEEecCCCcEEEEE-eeeeEeeeeeeeecceeee
Confidence            56678888864 7888887664  3433 3456899999999998764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.87  E-value=5.7e-10  Score=104.68  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=36.0

Q ss_pred             HHHcCcEEEeCCcEEEEecCCCE---EEECCCcEEEeccEEeccCCCC
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~---v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      +++.|++++.+++|+++..++..   |.+++| ++++|+||+|+|...
T Consensus       158 a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         158 TESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH
Confidence            45679999999999999987764   556665 599999999999753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.87  E-value=6.8e-10  Score=96.69  Aligned_cols=115  Identities=20%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHh
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  137 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~  137 (497)
                      .++||+||||||||++||.+|++.|.   +++|+|+.........    +.+... .....+++++. ..+.++...+.+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~---~v~vie~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~el~~~~~~   75 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDIAPG----GQLTTT-TDVENFPGFPEGILGVELTDKFRK   75 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBCTT----CGGGGC-SEECCSTTCTTCEEHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCC---cEEEEEeecccccccc----cccccc-hhhhccccccccccchHHHHHHHH
Confidence            35899999999999999999999998   8999998754332211    111100 00011111111 011111122234


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCCE-EEECCCcEEEeccEEeccCCC
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCT  182 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~~-v~~~~g~~i~~d~lvlAtG~~  182 (497)
                      +..+.++++..+ +|..++...+. ....+...+.+|.+++++|..
T Consensus        76 q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          76 QSERFGTTIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             HHHHTTCEEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             HHHhhcceeeee-eEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence            446779998864 78888876542 233344568999999999964

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.85  E-value=1.2e-08  Score=84.45  Aligned_cols=94  Identities=22%  Similarity=0.383  Sum_probs=67.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      .+++|+|||||.+|+|+|..+.++|.+ |++++|++..-.. ..+    .....+.+.+++++....+.++... ++.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~----~~~~~a~~~~~~~~~~~~~~ei~~~-~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVP----EEVELAKEEKCEFLPFLSPRKVIVK-GGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCH----HHHHHHHHTTCEEECSEEEEEEEEE-TTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cch----hheeecccccceeEeccccEEEEec-CCceE
Confidence            367899999999999999999999865 8899888754322 122    2223456788999999988888754 44443


Q ss_pred             EEEe------CCC---------cEEEcCEEEEeccC
Q 010917          294 AVKL------EDG---------STIDADTIVIGIGA  314 (497)
Q Consensus       294 ~v~~------~~g---------~~i~~D~vv~a~G~  314 (497)
                      .+..      ++|         .+++||.||+|+|.
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            3322      122         36999999999983

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.84  E-value=1.1e-09  Score=100.19  Aligned_cols=122  Identities=12%  Similarity=0.068  Sum_probs=71.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCCcc---cc--CC--CCCCCCCCCCCcccc-
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKG---YL--FP--LDKKPARLPGFHTCV-  127 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l~~~---~l--~~--~~~~~~~~~~~~~~~-  127 (497)
                      ...||+||||||||+++|..|+++|+   +|+|+|+++.......   .++..   .+  .+  ..........+.... 
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDA   79 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEET
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEec
Confidence            45799999999999999999999998   8999999754211100   00000   00  00  000000000000000 


Q ss_pred             ---------CCCCCCCCH-----hHH-HHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCC
Q 010917          128 ---------GSGGERQTP-----EWY-KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       128 ---------~~~~~~~~~-----~~~-~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                               .........     ..+ ...+..++.+.+++.++...  .++++++|.++.+|.+|.|.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          80 LTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             cCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence                     000000011     111 23467888999999887654  467889999999999999999654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=1.3e-08  Score=81.54  Aligned_cols=108  Identities=16%  Similarity=0.279  Sum_probs=79.9

Q ss_pred             CcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917          195 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  274 (497)
Q Consensus       195 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~  274 (497)
                      .|+.++.   .++.. ..+.++|+|+|||+|.+|+|.|..|++...+|++++|++.+..   ++...   .+.++..+|+
T Consensus        17 kGVsyca---~CDg~-a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~---~~l~~~~nI~   86 (130)
T d1vdca2          17 RGISACA---VCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKID   86 (130)
T ss_dssp             TTEESCH---HHHTT-SGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTEE
T ss_pred             CcEEEEE---EecCc-hHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhh---hccccCCceE
Confidence            5787762   33321 0146799999999999999999999999999999999987754   33333   3344556799


Q ss_pred             EEcCCeEEEEEeCCC-CcEEEEEeCC---C--cEEEcCEEEEec
Q 010917          275 FVKGASIKNLEAGSD-GRVAAVKLED---G--STIDADTIVIGI  312 (497)
Q Consensus       275 i~~~~~v~~i~~~~~-~~v~~v~~~~---g--~~i~~D~vv~a~  312 (497)
                      +++++++.++..++. +.+..+.+.|   +  +++++|-|++++
T Consensus        87 v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          87 VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            999999999986432 3466665533   3  479999999874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.79  E-value=3.9e-08  Score=91.23  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=80.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------ccCHHH
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFTPSL  260 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------~~~~~~  260 (497)
                      -+|+|||+|++|+-+|..|.+.|.+|+++++.+.+...                                    .-.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            46999999999999999999999999999987543110                                    012457


Q ss_pred             HHHHHHHHHHCCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          261 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       261 ~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      .+++++..++.++  .+.++++|+++..+++...-.|.+.++++..+|.||+|+|.-
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            7888888888898  599999999998655554557889999999999999999974

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.73  E-value=7.7e-08  Score=90.31  Aligned_cols=97  Identities=18%  Similarity=0.252  Sum_probs=74.0

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------  254 (497)
                      .|+|||+|..|+-+|..+++.|.+|.|+++.+.....                                           
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~~  100 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIK  100 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccchh
Confidence            5999999999999999999999999999876321000                                           


Q ss_pred             --------------------------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC
Q 010917          255 --------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  290 (497)
Q Consensus       255 --------------------------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~  290 (497)
                                                                  .....+...+.+.+++.|+++++++.++++..++++
T Consensus       101 lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g  180 (317)
T d1qo8a2         101 LVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH  180 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS
T ss_pred             HHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc
Confidence                                                        001224455666678899999999999998766788


Q ss_pred             cEEEEEeC--CCc--EEEcCEEEEeccC
Q 010917          291 RVAAVKLE--DGS--TIDADTIVIGIGA  314 (497)
Q Consensus       291 ~v~~v~~~--~g~--~i~~D~vv~a~G~  314 (497)
                      ++.++...  +++  .+.++.||+|+|-
T Consensus       181 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         181 SVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             BEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             cceeeEeecccceEEEEeccceEEeccc
Confidence            88877654  332  5889999999984

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.72  E-value=1.2e-08  Score=81.41  Aligned_cols=93  Identities=15%  Similarity=0.319  Sum_probs=68.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++++|||||+-|+.+|..+++.|.   +||++++.+...   |.+.           ..+           ...+.+.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~---~Vtvi~~~~~~l---~~~d-----------~~~-----------~~~l~~~   75 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV---PTMD-----------AEI-----------RKQFQRS   75 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC---eEEEEEEccccC---chhh-----------hcc-----------hhhhhhh
Confidence            34799999999999999999999997   899999987531   1000           000           1345678


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC--EEE--EC-CC--cEEEeccEEecc
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ--TLI--TN-SG--KLLKYGSLIVAT  179 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~--~v~--~~-~g--~~i~~d~lvlAt  179 (497)
                      +++.||++++++++.+++....  ++.  .. +|  +.+.+|.|++|.
T Consensus        76 l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          76 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            8999999999999999986543  333  32 33  358999999883

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.66  E-value=1e-08  Score=91.05  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..++|++||||||||++||..+++.|.   +|+|||++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~---~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCC
Confidence            346899999999999999999999998   899999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.65  E-value=2.2e-08  Score=94.39  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ....||+|||+|+|||+||..|+++|+   +|+||||.+.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~---~V~llEk~~~   57 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGA---KVILLEKEPI   57 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTC---CEEEECSSSS
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            345799999999999999999999998   8999999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.7e-08  Score=86.70  Aligned_cols=109  Identities=22%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  140 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (497)
                      +||+||||||+|++||..+++.|.   +++|||++....     +    ...  .....++++....+......+....+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~---~v~iie~~~gg~-----~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGGQ-----I----LDT--VDIENYISVPKTEGQKLAGALKVHVD   67 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTGG-----G----GGC--CEECCBTTBSSEEHHHHHHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCC---eEEEEEEecCCc-----c----ccc--ccceeccccchhhhHHHHHHHHHHhh
Confidence            799999999999999999999998   899999753210     0    000  00011111111111000112233445


Q ss_pred             HcCcEEEeCCcEEEEecCC-----CEEEECCCcEEEeccEEeccCCCC
Q 010917          141 EKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATGCTA  183 (497)
Q Consensus       141 ~~~v~~~~~~~v~~i~~~~-----~~v~~~~g~~i~~d~lvlAtG~~~  183 (497)
                      +.+++......+..+....     +.....++..+..+.+++++|..+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  115 (184)
T d1fl2a1          68 EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL  115 (184)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             heeceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence            6678887777777665432     244556667889999999999643

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.62  E-value=2.8e-08  Score=88.04  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..+||+||||||||++||..+++.|.   +|+|||+++..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~---kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCCC
Confidence            46999999999999999999999998   89999997643

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.61  E-value=1.2e-07  Score=86.55  Aligned_cols=104  Identities=16%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc----------CCCcchhhcCCcccCCCEEec----
Q 010917          271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK----------PTVSPFERVGLNSSVGGIQVD----  336 (497)
Q Consensus       271 ~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~----------p~~~~~~~~gl~~~~g~i~vd----  336 (497)
                      .+..+..++.+..+...++ .+ .+.+.+|+.+.+|.++++....          |...-.....+. ..+...++    
T Consensus       223 ~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~~~~~~  299 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSPG-GV-TVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGVNRYEY  299 (347)
T ss_dssp             CCTTEESSCCEEEEEECSS-CE-EEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTCCHHHH
T ss_pred             cccccccccccccccccCc-cE-EEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccccccch
Confidence            4567888888999886533 33 5888999999999999987532          111000000000 11111122    


Q ss_pred             CCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917          337 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  385 (497)
Q Consensus       337 ~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~  385 (497)
                      +.++++.++||++||++....+.        ..+.|..+|+.+|+.|++
T Consensus       300 ~~~~~~~~~v~~~GD~~~~~~~~--------~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         300 DQLRAPVGRVYFTGEHTSEHYNG--------YVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHHHCCBTTEEECSGGGCSSCTT--------SHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccCCEEEEEccccCcCCC--------HHHHHHHHHHHHHHHHHH
Confidence            23457889999999998754321        345577888888887764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.60  E-value=1.6e-08  Score=95.21  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=33.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ....||||||||+|||+||++|+++|.   +|+||||.+.
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~---~V~vlEK~~~   53 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPF   53 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            346899999999999999999999998   8999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=7.6e-08  Score=86.08  Aligned_cols=36  Identities=17%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      .+||+||||||||++||.++++.|+   +|+|||+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~---kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDK---KVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCC---CEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCC
Confidence            4899999999999999999999998   89999987653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.56  E-value=1.5e-07  Score=87.71  Aligned_cols=66  Identities=24%  Similarity=0.328  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCcc
Q 010917          260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS  328 (497)
Q Consensus       260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~  328 (497)
                      +...+.+..++.|++++.+++|++++.. ++++..|.+++| +++||.||+|+|...+ .+++.+|+..
T Consensus       150 l~~~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~g-~i~a~~VV~aaG~~s~-~l~~~~g~~l  215 (305)
T d1pj5a2         150 AVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGMAV  215 (305)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTCCC
T ss_pred             hhhhHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccce-eEECCEEEEecchhHH-HHHHHcCCcc
Confidence            4455666678899999999999999875 677778888777 6999999999998654 6667666654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.55  E-value=3.6e-08  Score=93.39  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+||||||||+|||+||++|+++|.   +|+||||.+
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~---~V~liEK~~   38 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIP   38 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSC
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCC
Confidence            4799999999999999999999998   899999975

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.55  E-value=1e-07  Score=84.41  Aligned_cols=127  Identities=18%  Similarity=0.190  Sum_probs=81.8

Q ss_pred             CCCCCCCCcEEEecCHHHHHHHH---Hh---hccCCeEEEEcCCHHHHHHHHHHHhC--------------------C-C
Q 010917          188 EKIGGYLPGVHYIRDVADADALI---SS---LEKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-L  240 (497)
Q Consensus       188 ~~~g~~~~gv~~~~~~~~~~~~~---~~---~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g-~  240 (497)
                      .+||.+++|++...++...-.-.   ..   ...+++|+|||+|.+|+++|..|.+.                    | .
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~   84 (225)
T d1cjca1           5 DIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVK   84 (225)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCC
Confidence            46899999999865443221100   00   12479999999999999999999873                    4 4


Q ss_pred             cEEEEecCCcchhhccCHHHHH-----------------------------------HHHHHH--------------HHC
Q 010917          241 DTTIIFPENHLLQRLFTPSLAQ-----------------------------------RYEQLY--------------QQN  271 (497)
Q Consensus       241 ~Vtlv~~~~~~~~~~~~~~~~~-----------------------------------~~~~~l--------------~~~  271 (497)
                      +|+++.|+...-..+..+++.+                                   .+.+.+              ..+
T Consensus        85 ~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (225)
T d1cjca1          85 TVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASR  164 (225)
T ss_dssp             EEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSE
T ss_pred             eEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccccccc
Confidence            7999998864322211122211                                   111111              135


Q ss_pred             CcEEEcCCeEEEEEeCCCC-cEEEEEeC---------------CC--cEEEcCEEEEeccC
Q 010917          272 GVKFVKGASIKNLEAGSDG-RVAAVKLE---------------DG--STIDADTIVIGIGA  314 (497)
Q Consensus       272 GV~i~~~~~v~~i~~~~~~-~v~~v~~~---------------~g--~~i~~D~vv~a~G~  314 (497)
                      ++.+++...+.++..++++ ++..+++.               .|  .+++||+||.|+|+
T Consensus       165 ~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         165 AWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            6899999999999876554 56555431               12  35999999999996

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.52  E-value=5.2e-07  Score=85.19  Aligned_cols=100  Identities=17%  Similarity=0.095  Sum_probs=72.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcchhh---------------------------------------
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR---------------------------------------  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~---------------------------------------  254 (497)
                      =|+|+|||+|++|+-+|..|++.+  .+|+++++++.+...                                       
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            479999999999999999998876  489999999765200                                       


Q ss_pred             --------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc---EEE
Q 010917          255 --------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS---TID  304 (497)
Q Consensus       255 --------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~-~~g~---~i~  304 (497)
                                                ....++.+++....+..+..++++++|++++..++...+.+.. +.++   ...
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~  163 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI  163 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEE
Confidence                                      0013556677777777788999999999998764332222222 2222   456


Q ss_pred             cCEEEEeccCc
Q 010917          305 ADTIVIGIGAK  315 (497)
Q Consensus       305 ~D~vv~a~G~~  315 (497)
                      +|.||+|+|..
T Consensus       164 ~d~VI~AtG~~  174 (335)
T d2gv8a1         164 FDAVSICNGHY  174 (335)
T ss_dssp             ESEEEECCCSS
T ss_pred             eeEEEEccccc
Confidence            99999999974

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.52  E-value=1.6e-06  Score=81.62  Aligned_cols=121  Identities=17%  Similarity=0.240  Sum_probs=75.3

Q ss_pred             HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCcCCC---------------cch
Q 010917          262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTV---------------SPF  321 (497)
Q Consensus       262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~p~~---------------~~~  321 (497)
                      ..+.+..++.||+++.++.+.++..+ ++++..+..   .+|+  ++.++.||+|+|--...               ...
T Consensus       162 ~~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~  240 (336)
T d2bs2a2         162 FAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA  240 (336)
T ss_dssp             HHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHH
T ss_pred             HHHHHHHHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhh
Confidence            34455566789999999999887754 566554433   4564  58899999999853210               112


Q ss_pred             hhcCC-cc-cCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          322 ERVGL-NS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       322 ~~~gl-~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      ...|. .. +-++|.+|...+|+.|++|++||++........+.. -..+..+...+..+++..+
T Consensus       241 ~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         241 LETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLG-GNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             HTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCT-THHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccceeechhhcccCCcceeccccccccccccccch-hhccchhhhhcchhHHHHH
Confidence            23343 22 456899999999999999999998764332211111 1133344455555555444

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=4.3e-08  Score=91.79  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..||+|||+|+|||+||.++++++. ..+|+|+||..
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~   40 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVY   40 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSC
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCC
Confidence            4799999999999999999999864 55899999975

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=6.7e-08  Score=86.42  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .||+||||||||++||.++++.+....+|+|||++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            589999999999999999999887445899999875

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.42  E-value=6.7e-08  Score=88.03  Aligned_cols=39  Identities=21%  Similarity=0.389  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      .+..+|++||||||+|+.||..+++.|.   ++++||+.+..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~---kv~vve~~~~l   77 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFL   77 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcc
Confidence            3456899999999999999999999997   89999997654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.4e-07  Score=83.44  Aligned_cols=34  Identities=26%  Similarity=0.532  Sum_probs=31.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .|||+||||||||++||..+++.|.   +|+|||++.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~---kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGA---RAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccC
Confidence            4899999999999999999999998   899999875

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=2.1e-06  Score=79.70  Aligned_cols=87  Identities=24%  Similarity=0.419  Sum_probs=61.3

Q ss_pred             HHHCCcEEEcCCeEEEEEeCCC------CcEEEEEe---CCCc--EEEcCEEEEeccCcCCC---------------cch
Q 010917          268 YQQNGVKFVKGASIKNLEAGSD------GRVAAVKL---EDGS--TIDADTIVIGIGAKPTV---------------SPF  321 (497)
Q Consensus       268 l~~~GV~i~~~~~v~~i~~~~~------~~v~~v~~---~~g~--~i~~D~vv~a~G~~p~~---------------~~~  321 (497)
                      +++.+++++.++.+.++..+++      +++.++..   .+++  .+.++.||+|+|-....               .++
T Consensus       148 ~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA  227 (305)
T d1chua2         148 LNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMA  227 (305)
T ss_dssp             HHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHH
T ss_pred             HhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEeec
Confidence            3557888888888888764422      25666654   2343  57899999999853211               023


Q ss_pred             hhcCCccc-CCCEEecCCCCCCCCcEEEeccccc
Q 010917          322 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA  354 (497)
Q Consensus       322 ~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~  354 (497)
                      ...|.... -++|.+|++.+|+.|++||+|+++.
T Consensus       228 ~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~  261 (305)
T d1chua2         228 WRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY  261 (305)
T ss_dssp             HHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             cccceeeEecceeEECCcccCCCCCceecccEEE
Confidence            45666653 4689999999999999999999754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=1.4e-07  Score=85.05  Aligned_cols=59  Identities=19%  Similarity=0.231  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCC-CcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~-~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      ..+.+.+.+.+++.|++|+++++|++|..+++ +++..| +.+|+++.||.||....+-|+
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence            35677888889999999999999999975444 455554 468889999999986555553

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.1e-07  Score=89.65  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +++||+|||+|+|||+||.+++++|.   +|+|+||.+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~---~V~lleK~~   40 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVF   40 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTC---CCEEECSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCC---eEEEEeCCC
Confidence            45899999999999999999999997   899999975

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=3.5e-07  Score=83.94  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHH-cCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~~V~lie~~~~~   98 (497)
                      ..+||+|||||||||+||.+|++ .|+   +|+|+|+++..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~---~V~vlE~~~~~   69 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSP   69 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCC---eEEEEecCCCC
Confidence            35799999999999999999987 488   89999998754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.32  E-value=4.2e-07  Score=82.20  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +...+||+|||||++||++|+.|+++|+   +|+|||++.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~---~V~vier~~   39 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL   39 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            4556899999999999999999999998   899999975

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.30  E-value=2.5e-07  Score=80.02  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ++||+||||||+||+||.+|+++|++  +|+|+|+.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~--~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCC--eEEEEEecCcc
Confidence            48999999999999999999999983  59999998764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.29  E-value=2.8e-06  Score=74.19  Aligned_cols=96  Identities=20%  Similarity=0.336  Sum_probs=68.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC-c----------------chhhccC------HHHHHHHHHHHHH-CCc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-H----------------LLQRLFT------PSLAQRYEQLYQQ-NGV  273 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~----------------~~~~~~~------~~~~~~~~~~l~~-~GV  273 (497)
                      .|+|||+|+.|+|.|..+++.|.++.+++... .                .+.+..+      ......+++.+++ .++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            58999999999999999999999999997641 1                0101011      1122334444433 488


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917          274 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  315 (497)
Q Consensus       274 ~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~  315 (497)
                      .++.+. |.++.. +++++..|.+.+|.++.|..||+++|.-
T Consensus        84 ~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          84 HLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             EEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCcc
Confidence            888765 566553 3678889999999999999999999953

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.27  E-value=2.4e-06  Score=77.23  Aligned_cols=101  Identities=17%  Similarity=0.278  Sum_probs=74.2

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----ccCHHHHH---------------------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQ---------------------------  262 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----~~~~~~~~---------------------------  262 (497)
                      ..+||+|||+|+.|+-+|..|++.|.+|+|+++.+.....     .+.+....                           
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            4689999999999999999999999999999986543211     01111111                           


Q ss_pred             -----------------HH-HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          263 -----------------RY-EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       263 -----------------~~-~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                                       .+ ...-...++.++.+..+++++..+++  ..+++.||+++.+|.+|.|.|....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccc
Confidence                             11 11123457889999999999875444  3588999999999999999997653

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.2e-07  Score=87.00  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=35.6

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ..+++||+|||||+|||+||+.|+++|+   +|+|+|+++...
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~---~V~VlEa~~r~G   41 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG   41 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSSB
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCc
Confidence            3456899999999999999999999998   899999987653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.27  E-value=8.7e-07  Score=73.56  Aligned_cols=75  Identities=19%  Similarity=0.151  Sum_probs=54.8

Q ss_pred             CCcEEEE--cCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917           60 NREFVIV--GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  137 (497)
Q Consensus        60 ~~~VvII--GgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (497)
                      .+.++|+  |||.-|+.+|..|+++|.   +|||+++.+.....       . .+     ..            .....+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~---~Vtlv~~~~~~~~~-------~-~~-----~~------------~~~~~~   90 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVHLANYM-------H-FT-----LE------------YPNMMR   90 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSCTTTHH-------H-HT-----TC------------HHHHHH
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCC---eEEEEecCCccccc-------c-ch-----hH------------HHHHHH
Confidence            4566666  999999999999999998   89999997653111       0 00     00            123456


Q ss_pred             HHHHcCcEEEeCCcEEEEecCCCEE
Q 010917          138 WYKEKGIEMIYQDPVTSIDIEKQTL  162 (497)
Q Consensus       138 ~~~~~~v~~~~~~~v~~i~~~~~~v  162 (497)
                      .+.+.|+++++++++.+++.....+
T Consensus        91 ~l~~~GV~i~~~~~v~~i~~~~v~l  115 (156)
T d1djqa2          91 RLHELHVEELGDHFCSRIEPGRMEI  115 (156)
T ss_dssp             HHHHTTCEEEETEEEEEEETTEEEE
T ss_pred             HHhhccceEEeccEEEEecCcceEE
Confidence            7788999999999999998765443

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.26  E-value=3.4e-07  Score=81.11  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ++|||+|||||||||+||.+|++.|.   +|+|||+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~---~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccC
Confidence            57999999999999999999999998   8999998753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=2.4e-06  Score=76.58  Aligned_cols=35  Identities=17%  Similarity=0.081  Sum_probs=32.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      .|+|||+|..|+-+|..|++.|.+|+|+++++.+.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            58999999999999999999999999999987553

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.26  E-value=2.7e-07  Score=85.92  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=33.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      |||+|||||+|||+||+.|+++|+   +|+|+|+++...
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~---~V~vlE~~~~~G   37 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAG   37 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---CEEEEeCCCCCc
Confidence            789999999999999999999998   899999987653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.25  E-value=3.7e-07  Score=83.15  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      +||+|||||+|||+||+.|+++|++  +|+|+|+++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~--~V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGIT--DLLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCC--CEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCC--cEEEEECCCCC
Confidence            4899999999999999999999963  69999998764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.24  E-value=6.5e-07  Score=78.61  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=43.9

Q ss_pred             CCCCCCCCcEEEecCHHHHHHHHH------hhccCCeEEEEcCCHHHHHHHHHHH--------------------hCCC-
Q 010917          188 EKIGGYLPGVHYIRDVADADALIS------SLEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-  240 (497)
Q Consensus       188 ~~~g~~~~gv~~~~~~~~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-  240 (497)
                      .+||.+++|++...++...-.-..      ....+++|+|||+|++|+++|..|.                    +.|. 
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~   84 (216)
T d1lqta1           5 NIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQ   84 (216)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCc
Confidence            468999999988654432211000      0124789999999999999999886                    4454 


Q ss_pred             cEEEEecCCc
Q 010917          241 DTTIIFPENH  250 (497)
Q Consensus       241 ~Vtlv~~~~~  250 (497)
                      +|+++.|+..
T Consensus        85 ~V~iv~RRg~   94 (216)
T d1lqta1          85 EVVIVGRRGP   94 (216)
T ss_dssp             EEEEECSSCG
T ss_pred             eEEEEEECCh
Confidence            6999988743

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.5e-06  Score=72.56  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=35.4

Q ss_pred             HhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc-EEEeccEEeccC
Q 010917          136 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATG  180 (497)
Q Consensus       136 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lvlAtG  180 (497)
                      ...++..+++++.++++..++.+...+..++.+ .+++|.||+|+|
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCC
Confidence            345677899999999999998766555554433 589999999999

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=3.2e-07  Score=81.65  Aligned_cols=37  Identities=32%  Similarity=0.441  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+++||+||||||||++||.+|++.|.   +|+|||+.+.
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~---kV~lie~~~~   39 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCC
Confidence            456899999999999999999999998   8999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.16  E-value=6.4e-07  Score=83.59  Aligned_cols=37  Identities=22%  Similarity=0.444  Sum_probs=34.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      +++|+|||||++||+||+.|+++|+   +|+|+|++++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~---~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC---CEEEEECCCCCc
Confidence            5899999999999999999999998   899999998864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=5.6e-07  Score=83.40  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=34.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      ++||||||||++|++||+.|++.|+   +|+|+|++++..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~---~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCC---cEEEEECCCCcc
Confidence            4799999999999999999999998   899999998764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=2.8e-06  Score=78.84  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=30.6

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+.+||||||+|+|||+||.++++.|    +|+||||.+
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g----~V~llEK~~   39 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH----QVIVLSKGP   39 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS----CEEEECSSC
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC----CEEEEECCC
Confidence            34589999999999999999988754    699999986

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.08  E-value=1e-06  Score=78.24  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..+||+|||||||||+||.+|++.|+   +|+|||+.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~---~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCC
Confidence            35899999999999999999999998   8999998764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.08  E-value=7.5e-06  Score=62.81  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  293 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~  293 (497)
                      ..+|+|+|||+|.+|+++|..|++.+.+++++.+.+.....               ..++...  ..+.+++..  ++  
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~~~--~~i~~~~~~--~~--   88 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQQV--PEITKFDPT--TR--   88 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEEEE--CCEEEEETT--TT--
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccceec--CCeeEEecC--CC--
Confidence            47899999999999999999999999998888776644321               1233333  346677643  22  


Q ss_pred             EEEeCCCcEEE-cCEEEEe
Q 010917          294 AVKLEDGSTID-ADTIVIG  311 (497)
Q Consensus       294 ~v~~~~g~~i~-~D~vv~a  311 (497)
                      .+.+.||++++ .|.||+|
T Consensus        89 ~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          89 EIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEEETTTEEECCCSEEEEC
T ss_pred             EEEEcCCCEEeCCCEEEEC
Confidence            57899999887 7999987

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.03  E-value=1.5e-06  Score=76.62  Aligned_cols=34  Identities=29%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .+||+||||||||++||..+++.|.   +|+|||+..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~---kV~vIEk~~   36 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN   36 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---EEEEEecCC
Confidence            4899999999999999999999998   899999875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.01  E-value=1.8e-06  Score=79.50  Aligned_cols=34  Identities=15%  Similarity=0.357  Sum_probs=31.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.+|+||||||+||++|..|+++|+   +|+|+|+.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~---~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            4699999999999999999999998   899999975

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=6.4e-05  Score=69.49  Aligned_cols=89  Identities=22%  Similarity=0.412  Sum_probs=63.2

Q ss_pred             HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeccCc-----CCC--c--------chhhcC
Q 010917          266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAK-----PTV--S--------PFERVG  325 (497)
Q Consensus       266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vv~a~G~~-----p~~--~--------~~~~~g  325 (497)
                      +..+..+|+++.++.+.++..+ ++++.++.   ..+|+  .+.++.||+|+|--     ..+  .        ++...|
T Consensus       143 ~~~~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aG  221 (311)
T d1kf6a2         143 TSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHG  221 (311)
T ss_dssp             HHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTT
T ss_pred             HHHccCcceeEeeeEeeeeEec-CCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcc
Confidence            3334568999999999998754 67776654   34565  46899999999842     111  1        233455


Q ss_pred             Ccc-cCCCEEecCCCCCCCCcEEEecccccc
Q 010917          326 LNS-SVGGIQVDGQFRTRMPGIFAIGDVAAF  355 (497)
Q Consensus       326 l~~-~~g~i~vd~~~~t~~~~iya~GD~~~~  355 (497)
                      ... +-.+|.++++..+..+++|+.|++..-
T Consensus       222 a~l~dme~iq~~p~~~~~~~~~~~~~~~~~~  252 (311)
T d1kf6a2         222 VPLRDMGGIETDQNCETRIKGLFAVGECSSV  252 (311)
T ss_dssp             CCEESCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred             cceeecccccccccchhcccCCCcCcceeee
Confidence            554 346788899888999999999998753

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.97  E-value=8.1e-05  Score=67.91  Aligned_cols=127  Identities=17%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------ccC---------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFT---------------------------------  257 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------~~~---------------------------------  257 (497)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+.....      .+.                                 
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            37999999999999999999999999999987532110      000                                 


Q ss_pred             --------------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeccCc
Q 010917          258 --------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAK  315 (497)
Q Consensus       258 --------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vv~a~G~~  315 (497)
                                          ..+...+.+.+++.+..++...........+++.+......+|+  ++.||+||-|.|.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~  162 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH  162 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence                                12444556666777777777766655544434444322334554  57899999999987


Q ss_pred             CCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCC
Q 010917          316 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  357 (497)
Q Consensus       316 p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~  357 (497)
                      ....  +.++...            ......+.+||++....
T Consensus       163 S~vR--~~i~~~~------------~~~~~~~~~~~~~~~~~  190 (292)
T d1k0ia1         163 GISR--QSIPAER------------MQHGRLFLAGDAAHIVP  190 (292)
T ss_dssp             CSTG--GGSCGGG------------SEETTEEECGGGTEECC
T ss_pred             Cccc--ceeeecc------------ccccccccceeeeeecC
Confidence            5422  1111111            12355778898876443

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.97  E-value=3.5e-06  Score=74.86  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ++|||+||||||||++||.++++.|.+  .|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k--~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKK--RVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCC--CEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEeecc
Confidence            579999999999999999999998863  7999998654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.95  E-value=2.7e-05  Score=70.62  Aligned_cols=156  Identities=17%  Similarity=0.153  Sum_probs=93.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcchhh----ccCHH--------------------------------
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR----LFTPS--------------------------------  259 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~----~~~~~--------------------------------  259 (497)
                      -+|+|||+|+.|+-+|..|++.|. +|+|+++.+.+...    .+.+.                                
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   81 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence            479999999999999999999996 89999998654211    01111                                


Q ss_pred             ------------------------HHHHHH--HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEE
Q 010917          260 ------------------------LAQRYE--QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIV  309 (497)
Q Consensus       260 ------------------------~~~~~~--~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vv  309 (497)
                                              ....+.  ......++.+..+++++.+...+++ + .+.+.++    +++.+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-v-~v~~~~g~~~~~~~~ad~vi  159 (288)
T d3c96a1          82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR-V-LIGARDGHGKPQALGADVLV  159 (288)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE-E-EEEEEETTSCEEEEEESEEE
T ss_pred             EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc-E-EEEEEcCCCCeEEEeeceee
Confidence                                    001111  1123467889999999888865443 3 3455544    479999999


Q ss_pred             EeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917          310 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  384 (497)
Q Consensus       310 ~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~  384 (497)
                      .|-|......  .......   .............++..+||++....+..|..     ...|..-+...+..+.
T Consensus       160 ~ADG~~S~vr--~~~~~~~---~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G-----~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         160 GADGIHSAVR--AHLHPDQ---RPLRDPLPHWGRGRITLLGDAAHLMYPMGANG-----ASQAILDGIELAAALA  224 (288)
T ss_dssp             ECCCTTCHHH--HHHCTTC---CCCCCCCSCCCBTTEEECTHHHHCCCSSTTCT-----HHHHHHHHHHHHHHHH
T ss_pred             ccCCccceee--eeecccc---ccccccccccccCcceecccccceeCCccccc-----hhhhhhhHHHHHHHHh
Confidence            9999764321  1110000   00001111234567899999997655544432     2335555555555554

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.93  E-value=1.4e-05  Score=65.42  Aligned_cols=37  Identities=19%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..++|||||||.+|+-+|..+.+.|..  +|+++.+.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~--~V~vi~rr~~   80 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGAR--RVFLVFRKGF   80 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCS--EEEEECSSCG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCc--ceeEEEeCCh
Confidence            456899999999999999999999863  7889877643

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=3.6e-05  Score=71.94  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5899999999999999999999999999875

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.88  E-value=7.6e-06  Score=72.33  Aligned_cols=90  Identities=17%  Similarity=0.192  Sum_probs=63.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcchhh---------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917          218 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  286 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~---------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  286 (497)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+...         .....+.......+++.|++++.++.|..   
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR---   79 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence            799999999999999999765  7799999999875321         12234455666778889999998876521   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917          287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  318 (497)
Q Consensus       287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~  318 (497)
                        +-..  ..+    .-.+|.+++|+|..+..
T Consensus        80 --~~~~--~~l----~~~~d~v~~a~Ga~~~~  103 (230)
T d1cjca2          80 --DVTV--QEL----QDAYHAVVLSYGAEDKS  103 (230)
T ss_dssp             --TBCH--HHH----HHHSSEEEECCCCCEEC
T ss_pred             --cccH--HHH----HhhhceEEEEeeccccc
Confidence              1000  001    12579999999987643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.85  E-value=5.8e-06  Score=75.31  Aligned_cols=36  Identities=14%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      .||+|||||||||++|..|+++|..  +|+|+|+.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~--~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIG--KVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC--eEEEEeCCCCC
Confidence            5899999999999999999999952  79999998754

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.83  E-value=6.2e-06  Score=73.45  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ++|||+||||||||++||..+++.|.+  .|+|+|++...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k--~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKK--RVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCC--CEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEEeccC
Confidence            468999999999999999999998853  69999988653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.80  E-value=1.6e-06  Score=77.08  Aligned_cols=99  Identities=18%  Similarity=0.137  Sum_probs=60.1

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc----------CHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKN  283 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~i~~~~~v~~  283 (497)
                      ..+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.....          ...........+.+.+.....    ..
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  122 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE----SQ  122 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT----CE
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee----ee
Confidence            3578999999999999999999999999999999877643211          011222233333332211111    01


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc
Q 010917          284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  320 (497)
Q Consensus       284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~  320 (497)
                      +... ..   .+...+..++.+|.||+|+|..+....
T Consensus       123 ~~~~-~~---~~~~~~~~~~~~d~vviAtG~~~~~~~  155 (233)
T d1djqa3         123 LALG-QK---PMTADDVLQYGADKVIIATGASECTLW  155 (233)
T ss_dssp             EECS-CC---CCCHHHHHTSCCSEEEECCCEECCHHH
T ss_pred             eecc-cc---cccchhhhhhccceeeeccCCCccccc
Confidence            1111 10   112223345789999999999876443

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=6.9e-06  Score=76.34  Aligned_cols=38  Identities=21%  Similarity=0.430  Sum_probs=33.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   98 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~   98 (497)
                      ...+||+|||||||||+||+.|+++  |+   +|+|+|+++..
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~---~~~~~~~~~~~   87 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDL---KVCIIESSVAP   87 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSSSC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCC---eEEEEEcCCCC
Confidence            3457999999999999999999976  66   89999998764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.77  E-value=2.1e-05  Score=69.42  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      ..+|+|+|||+|.+|+++|..+++.+.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            478999999999999999999999999988877664

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.69  E-value=1.2e-05  Score=76.60  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=33.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..++||||||+|+||+.+|..|++.|+   +|+|+|+...
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~---kVlvLEaG~~   38 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGY---KVAMFDIGEI   38 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCC---eEEEEecCCC
Confidence            356899999999999999999999998   8999999754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.66  E-value=1.4e-05  Score=75.32  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~-----~g~~~~~V~lie~~~~~   98 (497)
                      ..+||+||||||+|+++|..|++     +|+   +|+|+|+.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~---~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCC---cEEEEcCCCCC
Confidence            34899999999999999999974     677   89999998754

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00014  Score=57.18  Aligned_cols=87  Identities=15%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||.+++..|..|++...   +|+|+.+.+.+.-     .                          ....+.+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~---~V~li~r~~~~~~-----~--------------------------~~~~~~~   75 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVE---HVTLLEFAPEMKA-----D--------------------------QVLQDKL   75 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBS---EEEEECSSSSCCS-----C--------------------------HHHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCC---ceEEEeccccccc-----c--------------------------ccccccc
Confidence            5899999999999999999999754   8999987754200     0                          1122333


Q ss_pred             HH-cCcEEEeCCcEEEEecCCC---EEEECC---C--cEEEeccEEeccC
Q 010917          140 KE-KGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATG  180 (497)
Q Consensus       140 ~~-~~v~~~~~~~v~~i~~~~~---~v~~~~---g--~~i~~d~lvlAtG  180 (497)
                      .. .+|++++++++..+..++.   .+.+.+   |  ++++.|.|+++.|
T Consensus        76 ~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          76 RSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             HTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            33 4699999999999887643   244432   3  3689999999987

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00024  Score=55.74  Aligned_cols=91  Identities=18%  Similarity=0.212  Sum_probs=63.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  139 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (497)
                      .++|+|||||-+++..|..|.+..-   +|+++-+.+.+..+     .           ..           .....+..
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~~~~-----~-----------~~-----------~~~~~~~~   76 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGFRAE-----K-----------IL-----------IKRLMDKV   76 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSS---EEEEECSSSSCCCC-----H-----------HH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCC---cEEEEeecccccch-----h-----------HH-----------HHHHHHhh
Confidence            5899999999999999999998764   89999877542100     0           00           01122223


Q ss_pred             HHcCcEEEeCCcEEEEecCCC---EEEECCC------cEEEeccEEeccC
Q 010917          140 KEKGIEMIYQDPVTSIDIEKQ---TLITNSG------KLLKYGSLIVATG  180 (497)
Q Consensus       140 ~~~~v~~~~~~~v~~i~~~~~---~v~~~~g------~~i~~d~lvlAtG  180 (497)
                      ...++.++.++++..+.-++.   .+++.+.      +.++.|.|+++.|
T Consensus        77 ~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          77 ENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             cccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            446888999999999887654   3445432      3588999999877

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=2.5e-05  Score=69.14  Aligned_cols=91  Identities=12%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCC-------CcEEEEecCCcchhh---------ccCHHHHHHHHHHHHHCCcEEEcCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWK-------LDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGA  279 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g-------~~Vtlv~~~~~~~~~---------~~~~~~~~~~~~~l~~~GV~i~~~~  279 (497)
                      +.+|+|||+|+.|+.+|..|+++|       .+|+|+++.+.+...         .....+.+.....+.+.|++++++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            468999999999999999999987       479999998765421         1123445566677888999999997


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917          280 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  317 (497)
Q Consensus       280 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~  317 (497)
                      .+....          ..+ .-...+|.+++++|..+.
T Consensus        82 ~v~~~~----------~~~-~~~~~~~~v~~atGa~~~  108 (239)
T d1lqta2          82 VVGEHV----------QPG-ELSERYDAVIYAVGAQSR  108 (239)
T ss_dssp             CBTTTB----------CHH-HHHHHSSEEEECCCCCEE
T ss_pred             Eecccc----------chh-hhhccccceeeecCCCcc
Confidence            652110          000 112358999999998654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=4.5e-05  Score=70.56  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL  251 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~  251 (497)
                      .+.|+|||+|+.|+.+|..|+++  |.+|+++++.+.+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            46799999999999999999864  8999999988654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.47  E-value=4.2e-05  Score=72.15  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=30.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHH----cCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~----~g~~~~~V~lie~~~~   97 (497)
                      ..||||||+|+|||+||.+|++    .|.   +|+||||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~---~V~vieK~~~   59 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGL---KVTLVEKAAV   59 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTC---CEEEECSSCT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcC---EEEEEeCCCC
Confidence            5799999999999999999986    455   8999999764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.28  E-value=0.0012  Score=61.94  Aligned_cols=31  Identities=32%  Similarity=0.382  Sum_probs=29.4

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .|+|||+|..|+-+|..|++.|.+|.|++++
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            5899999999999999999999999999975

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00011  Score=57.48  Aligned_cols=65  Identities=14%  Similarity=0.089  Sum_probs=51.8

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCC-h-hhhcCCCcHHHHHHHHHccCCccc
Q 010917          431 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVEA  495 (497)
Q Consensus       431 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  495 (497)
                      ..+.++.++  +++|+|+.+++..++++...-. +++++.+++ . ...+.|||++|+++.|++++.+++
T Consensus        51 ~G~~Kli~d~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~  120 (123)
T d1v59a3          51 EGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKA  120 (123)
T ss_dssp             CCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCC
T ss_pred             cEEEEEEEECCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCC
Confidence            457777665  4899999998888888776654 578888886 3 345889999999999999988765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.27  E-value=0.00059  Score=51.72  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||+|.+|+-.|..|++...   +++++.+.+....                                      
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak---~v~~~~~r~~~~~--------------------------------------   69 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAK---HPIYQSLLGGGDI--------------------------------------   69 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC---SSEEEECTTCCSC--------------------------------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcC---EEEEEEecCcccc--------------------------------------
Confidence            46899999999999999999998764   5555554322100                                      


Q ss_pred             HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEE-eccEEec
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLK-YGSLIVA  178 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~-~d~lvlA  178 (497)
                       ...++...  ..+..++...+.+.+.+|..+. .|++|+|
T Consensus        70 -~~~~~~~~--~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          70 -QNESLQQV--PEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             -BCSSEEEE--CCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             -ccccceec--CCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence             00011112  3466777888899999998875 6999876

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.24  E-value=0.00012  Score=69.30  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +|||||+|++|+.+|..|+++|+   +|+|+|+...
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGV---QTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcC---eEEEEecCCC
Confidence            89999999999999999999998   8999999754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.23  E-value=5.3e-05  Score=67.01  Aligned_cols=34  Identities=15%  Similarity=0.097  Sum_probs=27.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCC---CcEEEEcCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKE   95 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~---~~V~lie~~   95 (497)
                      ||+|||||++||++|++|+++|++-   .++++++++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            6999999999999999999999721   245666655

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.19  E-value=0.00012  Score=69.38  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...||||||+|++|+.+|.+|++.|+   +|+|+|+...
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~   41 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGI---PTQIVEMGRS   41 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence            35799999999999999999999998   8999999743

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.15  E-value=0.00047  Score=54.24  Aligned_cols=87  Identities=21%  Similarity=0.307  Sum_probs=60.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  138 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (497)
                      ..++|+|||||-+++..|..|++...   +|+||-+.+.+.-+     .                         ....+.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~ra~-----~-------------------------~~~~~l   79 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGS---KVYIIHRRDAFRAS-----K-------------------------IMQQRA   79 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSS---EEEEECSSSSCCSC-----H-------------------------HHHHHH
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCC---cEEEEEeccccccc-----h-------------------------hhhhcc
Confidence            35899999999999999999998754   89999887653100     0                         011222


Q ss_pred             HHHcCcEEEeCCcEEEEecCCC-----EEEEC---CC--cEEEeccEEec
Q 010917          139 YKEKGIEMIYQDPVTSIDIEKQ-----TLITN---SG--KLLKYGSLIVA  178 (497)
Q Consensus       139 ~~~~~v~~~~~~~v~~i~~~~~-----~v~~~---~g--~~i~~d~lvlA  178 (497)
                      ....+|++++++++..+.-+.+     .+.+.   ++  +++..|.|+||
T Consensus        80 ~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          80 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence            3345799999999998876542     23332   23  46888888886

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.13  E-value=0.00016  Score=68.31  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+|+||||+|+||+.+|.+|++.|+   +|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~---~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGK---KVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC---eEEEEEccCC
Confidence            5899999999999999999999987   8999999853

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.10  E-value=0.0019  Score=58.15  Aligned_cols=101  Identities=21%  Similarity=0.226  Sum_probs=69.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHh-CCCcEEEEecCCcchhhcc--------------C----------------------
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQRLF--------------T----------------------  257 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~~~~~~--------------~----------------------  257 (497)
                      ....|+|||+|+.|+.+|..|++ .|.+|+++++.+.+.....              .                      
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            35679999999999999999987 5999999998864321100              0                      


Q ss_pred             --HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe--------------CCCcEEEcCEEEEeccCcC
Q 010917          258 --PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--------------EDGSTIDADTIVIGIGAKP  316 (497)
Q Consensus       258 --~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~--------------~~g~~i~~D~vv~a~G~~p  316 (497)
                        ..+...+.+.++..++.+..++.+..+... ++++..+..              .++.++.++.+|.++|...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence              112333445556678888888888776643 444444432              1235789999999999764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.06  E-value=0.009  Score=55.35  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=27.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHh----CCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~----~g~~Vtlv~~~  248 (497)
                      -.|+|||+|..|+-.|..+++    .|.+|.|+++.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            369999999999888887764    79999999865

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.03  E-value=0.00023  Score=67.90  Aligned_cols=38  Identities=21%  Similarity=0.417  Sum_probs=33.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+.+|+||||||+||+..|.+|++.+  ..+|+|||+.+.
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~--~~~VLlLEaG~~   59 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENP--KIKVLVIEKGFY   59 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTST--TCCEEEEESSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCC--CCeEEEEcCCCC
Confidence            44699999999999999999999986  238999999864

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.00  E-value=0.00035  Score=54.61  Aligned_cols=65  Identities=18%  Similarity=0.105  Sum_probs=51.6

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCC-h-hhhcCCCcHHHHHHHHHccCCccc
Q 010917          431 PKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-K-AKLQQASSVEEALEIARAALPVEA  495 (497)
Q Consensus       431 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  495 (497)
                      ..+.|+.++  +++|+|+.+++.+++++...- .+++++.+++ . ...+.|||++|+++.|++++..++
T Consensus        51 ~G~vKlv~d~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~  120 (124)
T d3lada3          51 AGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHA  120 (124)
T ss_dssp             CCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCC
T ss_pred             CeEEEEEEECCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCC
Confidence            457777774  489999999888888877554 5578998887 3 335889999999999999987764

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00037  Score=53.90  Aligned_cols=62  Identities=16%  Similarity=0.143  Sum_probs=48.2

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCC--hhhhcCCCcHHHHHHHHHccCC
Q 010917          431 PKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD--KAKLQQASSVEEALEIARAALP  492 (497)
Q Consensus       431 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  492 (497)
                      ..|.++.++  +++|+|+.+++.++.++...- -+++.+.+++  ...++.|||++|+++.|+++++
T Consensus        51 ~G~vKlv~d~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~l~  117 (118)
T d1xdia2          51 HGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM  117 (118)
T ss_dssp             SCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred             hhheEEEEecCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence            346677664  489999999888888866554 4578888886  2345889999999999998865

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00045  Score=50.92  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..++|+|+|.|.+|+++|..|.++|.   +|+++|....
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~---~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC---CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC---EEEEeeCCcC
Confidence            35789999999999999999999997   8999997654

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.82  E-value=0.00036  Score=66.34  Aligned_cols=38  Identities=18%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .+.+|+||||||.||+..|.+|++.+  ..+|+|+|+.+.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~--~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENP--NISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTST--TCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCC--CCeEEEECCCCC
Confidence            44689999999999999999999875  238999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.81  E-value=0.00032  Score=65.00  Aligned_cols=39  Identities=26%  Similarity=0.349  Sum_probs=35.5

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      ..+|+|+|||+|+.|+-+|..|++.|.+|+|+++.+++.
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            457899999999999999999999999999999887654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00021  Score=52.79  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=55.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  294 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~  294 (497)
                      ++|+|+|+|.|-+|+.+|..|.+.|.+|++.+........           +.+ +.++.++++..              
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~~--------------   57 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGSL--------------   57 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESBC--------------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeeccc--------------
Confidence            5789999999999999999999999999999876532211           111 12333332210              


Q ss_pred             EEeCCCcEEEcCEEEEeccCcCCCcchhh
Q 010917          295 VKLEDGSTIDADTIVIGIGAKPTVSPFER  323 (497)
Q Consensus       295 v~~~~g~~i~~D~vv~a~G~~p~~~~~~~  323 (497)
                         .....-.+|.||+++|..++.+++..
T Consensus        58 ---~~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          58 ---NDEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             ---CHHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             ---chhhhccCCEEEECCCCCCCCHHHHH
Confidence               00012357999999999998877554

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.80  E-value=0.00053  Score=53.39  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCC-hh-hhcCCCcHHHHHHHHHccCCccc
Q 010917          431 PKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-KA-KLQQASSVEEALEIARAALPVEA  495 (497)
Q Consensus       431 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~  495 (497)
                      ..+.++.++  +|+|+|+.++++.++++...- .+++++.+++ .. ..+.|||++|+++.|++++..++
T Consensus        51 ~G~~Klv~d~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1dxla3          51 EGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKP  120 (123)
T ss_dssp             CCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCC
T ss_pred             cceEEEEEECCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCCC
Confidence            456677665  489999999888888877655 4578898886 33 35889999999999999877654

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.78  E-value=0.00048  Score=53.64  Aligned_cols=64  Identities=9%  Similarity=-0.011  Sum_probs=49.5

Q ss_pred             cEEEEEEE--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCC-h-hhhcCCCcHHHHHHHHHccCCccc
Q 010917          432 KIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-K-AKLQQASSVEEALEIARAALPVEA  495 (497)
Q Consensus       432 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  495 (497)
                      .+.++.++  +++|+|+.+++..++++...- .+++.+.+++ . ...+.|||++|+++.|++++..++
T Consensus        52 g~vklv~d~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1lvla3          52 GFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHA  120 (123)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCC
T ss_pred             hheeeeeecccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Confidence            46666554  489999999888888877655 4578888876 3 445889999999999999877654

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.78  E-value=0.00048  Score=54.05  Aligned_cols=64  Identities=8%  Similarity=0.029  Sum_probs=49.9

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCC--hhhhcCCCcHHHHHHHHHccCCcc
Q 010917          431 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEIARAALPVE  494 (497)
Q Consensus       431 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  494 (497)
                      ..|.++.++  +|+|+|+.+++.+++++...-. +++++.+++  ....+.|||++|+++.|++++.++
T Consensus        51 ~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~  119 (128)
T d1ojta3          51 KPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGT  119 (128)
T ss_dssp             SCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTC
T ss_pred             cceEEEEEeCCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCC
Confidence            446777664  4899999998888888776654 578888886  344588999999999999887654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.74  E-value=0.00024  Score=66.65  Aligned_cols=36  Identities=25%  Similarity=0.499  Sum_probs=31.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ...+|+||||||+||+.+|.+|++. +   +|+|||+.+.
T Consensus        24 ~~~YD~IIVGsG~aG~vlA~rLae~-~---kVLvLEaG~~   59 (351)
T d1ju2a1          24 EGSYDYVIVGGGTSGCPLAATLSEK-Y---KVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTTT-S---CEEEECSSBC
T ss_pred             cCCccEEEECccHHHHHHHHHhcCC-C---CEEEEecCCC
Confidence            3458999999999999999999975 5   8999999864

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.71  E-value=0.00094  Score=51.23  Aligned_cols=61  Identities=7%  Similarity=0.025  Sum_probs=47.1

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCC-h-hhhcCCCcHHHHHHHHHccC
Q 010917          431 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAAL  491 (497)
Q Consensus       431 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  491 (497)
                      ..+.|+.++  +++|+|+.+++.+++++...-. +++++.+++ . ...+.|||++|+++.|++.+
T Consensus        49 ~G~vKli~~~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~a  114 (115)
T d1ebda3          49 DGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA  114 (115)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHT
T ss_pred             cEEEEEEEeCCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHh
Confidence            456676665  4899999998888888776654 578888876 3 34588999999999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.68  E-value=0.0009  Score=61.51  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=36.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  254 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~  254 (497)
                      .|+|+|||+|++|+-+|..|++.|.+|+|+++++++...
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            589999999999999999999999999999999988764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0008  Score=62.47  Aligned_cols=39  Identities=23%  Similarity=0.447  Sum_probs=35.5

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      +..+|+|||+|..|+-+|..|++.|.+|+|+++++++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            457899999999999999999999999999999887654

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0024  Score=48.18  Aligned_cols=39  Identities=8%  Similarity=0.157  Sum_probs=33.0

Q ss_pred             CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhCCCCCC
Q 010917          431 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD  470 (497)
Q Consensus       431 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  470 (497)
                      +|-+.||+++++|||+++ .|--..+...|++|+.+...+
T Consensus        84 gKGVIFYLrd~~VVGVLL-WNvFnrm~iAR~iI~~~~~~~  122 (131)
T d1m6ia3          84 GKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHE  122 (131)
T ss_dssp             CEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCS
T ss_pred             CceEEEEecCCcEEEEEE-ecccCccHHHHHHHHcCCccc
Confidence            467899999999999997 677788999999998777654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.42  E-value=0.0015  Score=57.75  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      ...++|+|||+|..|+-+|..|+++|.+|+|+++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            34578999999999999999999999999999985

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.40  E-value=0.0013  Score=59.66  Aligned_cols=35  Identities=31%  Similarity=0.408  Sum_probs=32.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      +|+|||+|+.|+.+|..|++.|.+|+|+++.+++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            69999999999999999999999999999987664

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.37  E-value=0.0012  Score=54.94  Aligned_cols=34  Identities=9%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .++|+|||+|..|..+|..|.+.|+   +|+|++++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~---~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI---KVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC---EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCh
Confidence            4799999999999999999999998   899999875

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0005  Score=59.43  Aligned_cols=35  Identities=14%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCc
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENH  250 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~  250 (497)
                      ..+++|||+|++|+++|..|++.+.  +|+++.+.+.
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3568999999999999999988775  5899987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.12  E-value=0.0025  Score=53.13  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=31.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +++|.|||+|..|+..|..|+++|+   +|+++++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~---~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            3799999999999999999999998   899999864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.12  E-value=0.0029  Score=51.24  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..+|+|||+|.+|+.|+..+++.|.   +|+++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA---~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCC---EEEEEeCcH
Confidence            4799999999999999999999987   899999864

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.10  E-value=0.011  Score=46.73  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             HHHHHHHh---hccCCeEEEEc-CC-----H----HHHHHHHHHHhCCC--cEEEEecCCcchh-hccCHHHHHHHHHHH
Q 010917          205 DADALISS---LEKAKKVVVVG-GG-----Y----IGMEVAAAAVGWKL--DTTIIFPENHLLQ-RLFTPSLAQRYEQLY  268 (497)
Q Consensus       205 ~~~~~~~~---~~~~~~vvVvG-~G-----~----~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-~~~~~~~~~~~~~~l  268 (497)
                      ....+++.   ++.+.++++.- ++     .    .+.-++..|.++|.  +|.++...+.... ..+.+.+.+.+.+.+
T Consensus        19 ~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~   98 (141)
T d1fcda2          19 QTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGT   98 (141)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHH
Confidence            34444444   34566776542 22     2    24444455666664  5777665543211 123345667777778


Q ss_pred             HHCCcEEEcCCe--EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917          269 QQNGVKFVKGAS--IKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  311 (497)
Q Consensus       269 ~~~GV~i~~~~~--v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a  311 (497)
                      +++||+++.+..  +.+++..  .+  .+++.+|+++++|++++.
T Consensus        99 ~~~~I~~~~~~~~~~v~vd~~--~~--~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          99 ENAMIEWHPGPDSAVVKVDGG--EM--MVETAFGDEFKADVINLI  139 (141)
T ss_dssp             SSCSEEEECSSTTCEEEEEET--TT--EEEETTCCEEECSEEEEC
T ss_pred             HhcCceeeecCCceEEeecCC--cE--EEEeCCCcEEeeeEEEeC
Confidence            899999998764  6666632  22  467889999999999874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.09  E-value=0.01  Score=44.97  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .+++|+|||+|.+|..-|..|.+.|.+|+++.+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.06  E-value=0.0034  Score=51.62  Aligned_cols=35  Identities=20%  Similarity=0.096  Sum_probs=31.6

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .-+|+|||+|.+|+.||..+.+.|.   +|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA---~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC---EEEEEeccHH
Confidence            4699999999999999999999987   8999998753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0027  Score=57.66  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  254 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~  254 (497)
                      .++|||+|++|+-+|..|++.|.+|+|+++++++...
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            5899999999999999999999999999999988764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.98  E-value=0.003  Score=52.63  Aligned_cols=34  Identities=21%  Similarity=-0.000  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .|++.|||+|..|.-+|..|++.|++|+++.+.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999999999999999999999998754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0018  Score=52.22  Aligned_cols=36  Identities=19%  Similarity=0.443  Sum_probs=32.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...++|+|||||..|+.-|..|.+.|.   +|+||+++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA---~VtVvap~~   46 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDL   46 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            457899999999999999999999987   899998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.84  E-value=0.0056  Score=49.40  Aligned_cols=39  Identities=10%  Similarity=0.232  Sum_probs=33.7

Q ss_pred             cCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           56 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        56 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ++.+++||+|||+|.-|.++|..|...++.  +++|+|..+
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~~   41 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   41 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEecc
Confidence            466778999999999999999999998873  899998664

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.0033  Score=50.67  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .+++++|||||.+|.+-|..|.+.|.+||++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999999999999654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.78  E-value=0.0052  Score=49.05  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ++++||.|||+|.-|.++|+.|+.++. -.++.|+|.+.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence            446799999999999999999999986 45899999764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.78  E-value=0.0048  Score=46.91  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=32.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      -..++|+|||||..|..-|..|.+.|.   +|++++++.
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga---~v~v~~~~~   45 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF   45 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEeccC
Confidence            456899999999999999999999987   899998764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.65  E-value=0.015  Score=50.11  Aligned_cols=36  Identities=8%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      -..|+|+|||+|-+|+-+|..|++.+.   +++++-+..
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~---~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAA---ELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBS---EEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhc---ccccccccc
Confidence            356899999999999999999999875   566665544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0048  Score=57.03  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=32.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      .|+|||+|..|+-+|..|++.|.+|+|+++.+++.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc
Confidence            38999999999999999999999999999887654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.58  E-value=0.0042  Score=48.84  Aligned_cols=33  Identities=18%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      |+++|||.|..|...|..|.+.|+   +|+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~---~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC---CCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---eEEEecCcH
Confidence            579999999999999999999998   799999875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.57  E-value=0.0037  Score=57.94  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             eEEEEcCCHHHHHHHHHHH-----hCCCcEEEEecCCcch
Q 010917          218 KVVVVGGGYIGMEVAAAAV-----GWKLDTTIIFPENHLL  252 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~-----~~g~~Vtlv~~~~~~~  252 (497)
                      .|+|||||+.|+-+|..|+     +.|.+|+|+++.+.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            5999999999999999996     5799999999887654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.38  E-value=0.0059  Score=47.86  Aligned_cols=32  Identities=19%  Similarity=0.358  Sum_probs=30.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +|+|+|+|.-|...|..|.+.|+   +|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~---~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH---DIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC---CcceecCCh
Confidence            79999999999999999999998   899999875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.37  E-value=0.0069  Score=53.31  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=32.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  252 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  252 (497)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            569999999999999999999999999999987653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.36  E-value=0.0069  Score=53.85  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=30.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .|+|||+|.+|+-+|..|+++|.+|+|+++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.22  E-value=0.0084  Score=49.44  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .|+|+|+|+|.+|..+|..|.+.|.+|+++.|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5899999999999999999999999999998864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.012  Score=49.32  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=33.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      ++|.|||+|..|..+|..++..|.+|+++++.+..+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            7899999999999999999999999999998876554

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.014  Score=44.61  Aligned_cols=39  Identities=21%  Similarity=0.409  Sum_probs=33.5

Q ss_pred             CCCCCcEEEEcCch-----------HHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           57 ANENREFVIVGGGN-----------AAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        57 ~~~~~~VvIIGgG~-----------AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ....++|+|||+||           ++..|+.+|++.|+   ++.++..++..
T Consensus         4 ~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~---~~iliN~NP~T   53 (127)
T d1a9xa3           4 RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY---RVINVNSNPAT   53 (127)
T ss_dssp             CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC---EEEEECSCTTC
T ss_pred             CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC---eEEEecCchHh
Confidence            45568999999996           68999999999999   89999988753

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.88  E-value=0.015  Score=44.54  Aligned_cols=55  Identities=7%  Similarity=-0.006  Sum_probs=41.9

Q ss_pred             cEEEEEEE--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCC--hhhhcCCCcHHHHHHH
Q 010917          432 KIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD--KAKLQQASSVEEALEI  486 (497)
Q Consensus       432 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~  486 (497)
                      .+.++.++  +++|+|+.+++++++++...- .+++++.+++  ....+.|||++|++..
T Consensus        58 g~~kli~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~  117 (119)
T d1onfa3          58 TYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT  117 (119)
T ss_dssp             EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred             ceEEEEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHh
Confidence            45555554  489999999888898877665 4578888876  3445889999999875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.80  E-value=0.013  Score=52.22  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=30.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .|+|||+|.+|+-+|..|+++|.+|+|+++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.01  Score=45.08  Aligned_cols=56  Identities=9%  Similarity=0.012  Sum_probs=42.8

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCC--hhhhcCCCcHHHHHHH
Q 010917          431 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEI  486 (497)
Q Consensus       431 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~  486 (497)
                      ..+.++.++  +++|+|+.++++.++++..... +++++.+++  ....+.|||++|++..
T Consensus        53 ~g~~k~i~~~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~  113 (115)
T d3grsa3          53 KCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT  113 (115)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             ceeEEEEEecCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHHh
Confidence            346666664  6899999998888988776654 568888776  2345999999999864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.74  E-value=0.019  Score=45.80  Aligned_cols=38  Identities=13%  Similarity=0.376  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+||.|||+|.-|.++|+.|...+. ..++.|+|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence            345799999999999999999999987 55899999754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.54  E-value=0.015  Score=48.40  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=33.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917          216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  253 (497)
Q Consensus       216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  253 (497)
                      -++|.|||+|..|..+|..++..|.+|+++++.+.-+.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIE   41 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHh
Confidence            47899999999999999999999999999998765443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.021  Score=47.76  Aligned_cols=35  Identities=17%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +-++|.|||+|.-|...|..+++.|+   +|+++|.++
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~   37 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE   37 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCC---cEEEEECCh
Confidence            34799999999999999999999998   899999875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.018  Score=46.68  Aligned_cols=33  Identities=9%  Similarity=0.119  Sum_probs=30.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ||+|||+|.-|...|..|++.|+   +|+++++++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~---~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH---EVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC---ceEEEEcCHH
Confidence            79999999999999999999998   8999998754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.51  E-value=0.019  Score=45.59  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=31.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +||.|||+|.-|.++|..|..++. -.++.|+|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeccc
Confidence            799999999999999999999986 55899998653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.27  E-value=0.034  Score=44.74  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=33.2

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..++||.|||+|.-|.++|+.|...|+ -.++.|+|..+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            345799999999999999999999997 56899999763

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.08  E-value=0.031  Score=44.10  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=30.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +||.|||+|.-|.++|..|..++. -.++.|+|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccCC
Confidence            589999999999999999999987 558999997653

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.03  E-value=0.024  Score=44.23  Aligned_cols=46  Identities=9%  Similarity=0.010  Sum_probs=37.5

Q ss_pred             CCEEEEEEeecCChHHhhHHH-HHHhCCCCCC--hhhhcCCCcHHHHHH
Q 010917          440 SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD--KAKLQQASSVEEALE  485 (497)
Q Consensus       440 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~  485 (497)
                      +++|+|+.++++.++++...- .+++++.+++  ...++.|||++|++.
T Consensus        66 ~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~  114 (133)
T d1h6va3          66 NERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFT  114 (133)
T ss_dssp             TTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGG
T ss_pred             cccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHH
Confidence            589999999888898877665 4578898887  345699999999983

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.02  E-value=0.015  Score=45.16  Aligned_cols=57  Identities=14%  Similarity=0.105  Sum_probs=42.9

Q ss_pred             cEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCC--hhhhcCCCcHHHHHHHHH
Q 010917          432 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEIAR  488 (497)
Q Consensus       432 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~  488 (497)
                      .+.++.++  +|+|+|+.+++.+++++..... +++++.+++  ...++.|||++|++....
T Consensus        53 ~~~klv~~~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~~  114 (128)
T d1feca3          53 FMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR  114 (128)
T ss_dssp             EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred             ceEEEeecCCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHHH
Confidence            35566554  5899999998888888776654 578888877  344688999999986643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.99  E-value=0.031  Score=46.38  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      -++|.|||+|.-|...|..+++.|+   +|+++|.++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGT---PILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTC---CEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            4789999999999999999999998   899999875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.074  Score=39.96  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCch-----------HHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           59 ENREFVIVGGGN-----------AAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        59 ~~~~VvIIGgG~-----------AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ..++|+|||+||           ++..|+.+|++.|+   +++++..++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~---~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY---ETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC---EEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC---eEEEEecChhh
Confidence            457999999995           68999999999998   89999988764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.96  E-value=0.014  Score=48.71  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=31.8

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.++||+|||+|.=|.+.|..|++.|+   +|+++.+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~---~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCR---EVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEE---EEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCC---eEEEEEecH
Confidence            345689999999999999999999988   899998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.03  Score=45.31  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=30.9

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      +|+|+|+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            799999999999999999999999999988764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.91  E-value=0.036  Score=44.20  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=33.2

Q ss_pred             cCCCCCcEEEEc-CchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           56 FANENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        56 ~~~~~~~VvIIG-gG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +....++|.||| .|.-|.+.|..|++.|+   +|+++|+..
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~d~~~   43 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGY---PISILDRED   43 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTC
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC---CcEeccccc
Confidence            345678999999 69999999999999999   899998764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.89  E-value=0.025  Score=51.00  Aligned_cols=33  Identities=33%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .|+|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV   50 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            699999999999999999999999999998753

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.022  Score=43.12  Aligned_cols=55  Identities=7%  Similarity=-0.114  Sum_probs=41.6

Q ss_pred             cEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCC-h-hhhcCCCcHHHHHHH
Q 010917          432 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEI  486 (497)
Q Consensus       432 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~  486 (497)
                      .+.++.++  +++|+|+.+++++++++..... +++++.+++ . ...+.|||++|++..
T Consensus        54 g~~k~v~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~  113 (115)
T d1gesa3          54 CRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT  113 (115)
T ss_dssp             EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             ceEEEEEecCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHHh
Confidence            35666654  5899999998888988776655 568888776 2 345899999998753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.043  Score=41.11  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   99 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   99 (497)
                      .+...+|.|||||.=|...|..+++.|+   ++.++|+++..|
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~---~v~v~d~~~~~P   47 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGV---EVIAVDRYADAP   47 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTC---EEEEEESSTTCG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCC---EEEEEcCCCCCc
Confidence            3445799999999999999999999998   899999987643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.73  E-value=0.044  Score=44.01  Aligned_cols=37  Identities=19%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...||.|||+|.-|.++|+.|...++ ..++.|+|..+
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGL-ADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            34689999999999999999999987 56899998763

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.56  E-value=0.044  Score=43.19  Aligned_cols=35  Identities=11%  Similarity=0.291  Sum_probs=31.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .||.|||+|.-|.++|+.|..++. -.++.|+|..+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            589999999999999999999987 56899998653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.55  E-value=0.04  Score=44.83  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      .+++|+|+|+|-++-+++..|.+.|.+  +|+|+.+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~--~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFE--KLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCC--CEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC--EEEEeccc
Confidence            457999999999999999999999864  79988765

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=93.47  E-value=0.036  Score=51.31  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=30.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .|+|||+|+.|+-+|..|++.|.+|.|++++.+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            489999999999999999999999999999754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.44  E-value=0.065  Score=41.48  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      +|+|+|+|..|..+|..|.+.|.+|++++..+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            68999999999999999999999999998653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.29  E-value=0.046  Score=43.04  Aligned_cols=34  Identities=12%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +||.|||+|.-|.++|..|+..+..  ++.++|..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeecc
Confidence            6999999999999999999998863  799998654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.02  E-value=0.039  Score=42.91  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      |+++|+|.|..|..+|..|.+.|.+|++++..+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            679999999999999999999999999997653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=92.98  E-value=0.045  Score=50.73  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .|+|||+|..|+-+|..|++.|.+|+|++++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            589999999999999999999999999998743

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.86  E-value=0.04  Score=46.35  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=29.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +|.|||.|.-|+..|..|+++|+   +|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~---~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH---EVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC---cEEEEeCCH
Confidence            69999999999999999999998   899999874

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.78  E-value=0.062  Score=42.27  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ||.|||+|.-|.+.|..|...+. -.++.|+|..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CceEEEecccc
Confidence            79999999999999999999986 55899999764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.73  E-value=0.049  Score=50.81  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHh------CCCcEEEEecCCcch
Q 010917          218 KVVVVGGGYIGMEVAAAAVG------WKLDTTIIFPENHLL  252 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~------~g~~Vtlv~~~~~~~  252 (497)
                      .|+|||||+.|+-+|..|++      .|.+|.|+++...+.
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            69999999999999999987      899999999986653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.58  E-value=0.11  Score=36.92  Aligned_cols=74  Identities=23%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             CeEEEEcCCHHHH-HHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917          217 KKVVVVGGGYIGM-EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  295 (497)
Q Consensus       217 ~~vvVvG~G~~g~-e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v  295 (497)
                      .|+-++|-|-+|+ -+|..|.++|.+|+--++.+       .     ...+.|++.|++++.+.....+           
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~-----~~t~~L~~~Gi~i~~gh~~~~i-----------   58 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------T-----ERTAYLRKLGIPIFVPHSADNW-----------   58 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------C-----HHHHHHHHTTCCEESSCCTTSC-----------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------C-----hhHHHHHHCCCeEEeeeccccc-----------
Confidence            3677888666665 56999999999999876543       1     2234589999999876432111           


Q ss_pred             EeCCCcEEEcCEEEEeccCcCCCcc
Q 010917          296 KLEDGSTIDADTIVIGIGAKPTVSP  320 (497)
Q Consensus       296 ~~~~g~~i~~D~vv~a~G~~p~~~~  320 (497)
                             -.+|.||++.+...+...
T Consensus        59 -------~~~d~vV~SsAI~~~npe   76 (89)
T d1j6ua1          59 -------YDPDLVIKTPAVRDDNPE   76 (89)
T ss_dssp             -------CCCSEEEECTTCCTTCHH
T ss_pred             -------CCCCEEEEecCcCCCCHH
Confidence                   247899999998766544

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.067  Score=43.52  Aligned_cols=36  Identities=11%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...++|+|+|+|-|+-+++..|.+.|.   +|+|+.+..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~---~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC---AVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce---EEEeccchH
Confidence            346899999999999999999999886   799988763

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.25  E-value=0.096  Score=41.49  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +.||.|||+|.-|.++|..|.+.+..  ++.|+|..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~--el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC--eEEEEeccC
Confidence            36999999999999999999888873  899999754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.069  Score=36.90  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      |+|.|+|+|..|..++.+..++|.++.++.+.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5799999999999999999999999999987653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.94  E-value=0.083  Score=38.31  Aligned_cols=76  Identities=17%  Similarity=0.153  Sum_probs=53.2

Q ss_pred             ccCCeEEEEcCCHHHHHH-HHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE
Q 010917          214 EKAKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  292 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~-A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v  292 (497)
                      ...+++-++|-|-+|+-. |..|.++|.+|+-.+....       +     ..+.|.+.|+++..+.....+        
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-------~-----~~~~L~~~Gi~v~~g~~~~~i--------   65 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-------V-----VTQRLAQAGAKIYIGHAEEHI--------   65 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-------H-----HHHHHHHTTCEEEESCCGGGG--------
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-------h-----hhhHHHHCCCeEEECCccccC--------
Confidence            457899999877666554 9999999999998876531       1     224567889998876532211        


Q ss_pred             EEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917          293 AAVKLEDGSTIDADTIVIGIGAKPTVS  319 (497)
Q Consensus       293 ~~v~~~~g~~i~~D~vv~a~G~~p~~~  319 (497)
                                -..|+||++.+...+..
T Consensus        66 ----------~~~d~vV~S~AI~~~np   82 (96)
T d1p3da1          66 ----------EGASVVVVSSAIKDDNP   82 (96)
T ss_dssp             ----------TTCSEEEECTTSCTTCH
T ss_pred             ----------CCCCEEEECCCcCCCCH
Confidence                      13588999998876544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.93  E-value=0.065  Score=42.20  Aligned_cols=33  Identities=12%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             cEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           62 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        62 ~VvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ||+|||| |.-|.++|..|..++. -.++.|+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence            7999996 9999999999999987 5589999865

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.90  E-value=0.094  Score=42.48  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=31.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +++|.|||.|.-|.+.|+.|++.|+ ..+|+.+|++.
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECCh
Confidence            3589999999999999999999997 56788888764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.74  E-value=0.088  Score=41.31  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=30.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ||.|||+|.-|.++|..|+.++. -.++.|+|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCc-CceEEEEeccc
Confidence            79999999999999999999886 55899998654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.71  E-value=0.09  Score=41.17  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ||.|||+|--|.++|..|..++. -.++.|+|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeccc
Confidence            79999999999999999999987 55899998653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.089  Score=44.10  Aligned_cols=35  Identities=14%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             CCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .++||+|+|| |..|-..+..|.++|+   +|+++.+++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~R~~   37 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDS   37 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEcCh
Confidence            4689999995 9999999999999998   899998864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.68  E-value=0.016  Score=50.10  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=23.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEE
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTT  243 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vt  243 (497)
                      +|+|||+|.+|+-+|..|++.|.+|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCce
Confidence            69999999999999999999997643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.67  E-value=0.2  Score=44.49  Aligned_cols=59  Identities=25%  Similarity=0.492  Sum_probs=43.3

Q ss_pred             cCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcC
Q 010917          215 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  278 (497)
Q Consensus       215 ~~~~vvVvG~-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~  278 (497)
                      +.++|+|.|| |++|..++..|.+.|.+|+++.|.+...    +.... .....+...+++++.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~~-~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDKV-QMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHHH-HHHHHHHTTTCEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhHH-HHHhhhccCCcEEEEe
Confidence            3467999995 9999999999999999999998875432    22222 2334567788888644

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.092  Score=42.61  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...|+|+|+|+-|+.++..++..|..  +|+++|.++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCH
Confidence            46899999999999999999998863  788888764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.067  Score=36.96  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   98 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   98 (497)
                      ++|.|||||.=|-..+....+.|+   ++.++++++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~---~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI---AVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE---EEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC---EEEEEcCCCCC
Confidence            689999999999999999999998   89999988654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.49  E-value=0.11  Score=42.69  Aligned_cols=36  Identities=14%  Similarity=0.333  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..++|+|||+|-+|-+++..|.+.|..  +|+++.+.+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~--~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCc--eEeeeccch
Confidence            458999999999999999999999864  899998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.13  Score=40.89  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      -+|+|+|.|.-|...+..|.+.|.   ++++||.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~---~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ---NVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC---CEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC---CEEEEeccc
Confidence            479999999999999999999987   799999875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.16  Score=37.77  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      ...+|.|+|||..|..+|.+..++|.++.++++.+.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346799999999999999999999999999987743

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.25  E-value=0.083  Score=41.61  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             cEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ||.|||+ |.-|.++|..|...+. -.++.|+|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc-ccccccccchh
Confidence            6999996 9999999999999986 45899998753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.19  E-value=0.089  Score=43.20  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      +|.|||+|.-|.+.|..|++.|+   +|+++.++
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~---~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN---EVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC---EEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC---EEEEEEec
Confidence            79999999999999999999998   89998763

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=0.14  Score=38.32  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             cCCeEEEEcCCH-----------HHHHHHHHHHhCCCcEEEEecCC
Q 010917          215 KAKKVVVVGGGY-----------IGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       215 ~~~~vvVvG~G~-----------~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      ..++|+|+|+|+           .+..++..|.+.|.++.++...|
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            357899999985           68899999999999999998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=0.42  Score=37.56  Aligned_cols=53  Identities=9%  Similarity=0.098  Sum_probs=39.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  278 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~  278 (497)
                      .+++|+|.|..|..++..|.+.|.+|++++..+.        ... ...+.+...|+.++.+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~--------~~~-~~~~~~~~~~~~vi~G   56 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPE--------DDI-KQLEQRLGDNADVIPG   56 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH--------HHH-HHHHHHHCTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch--------hHH-HHHHHhhcCCcEEEEc
Confidence            4799999999999999999999999999976542        112 2223345667887755

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=90.76  E-value=0.14  Score=41.05  Aligned_cols=36  Identities=17%  Similarity=0.477  Sum_probs=31.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ...++|+|||+|..|-..|..|..+|..  +++++.+.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~--~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVR--AVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCS--EEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCc--EEEEEcCc
Confidence            4568999999999999999999999863  68888765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.64  E-value=0.14  Score=41.33  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|+|+|+-|+.++..++..|.   +|++++.++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~---~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGA---ETYVISRSS   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccc---cccccccch
Confidence            35789999999999999998888886   788888764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.59  E-value=0.18  Score=40.41  Aligned_cols=35  Identities=40%  Similarity=0.544  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      ++.+|+|+|+|..|...+..+..+|.+|++++.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            46799999999999999999999999999998653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.54  E-value=0.19  Score=40.89  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=39.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  276 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~  276 (497)
                      ++.+|+|+|+|..|...+.....+|.+|++++.+..-+             +.+++.+-+++
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~-------------~~l~~l~~~~i   76 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATK-------------EQVESLGGKFI   76 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTH-------------HHHHHTTCEEC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHH-------------HHHHHhhcceE
Confidence            46799999999999999999999999999998765432             34566666665

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.42  E-value=0.13  Score=41.33  Aligned_cols=35  Identities=14%  Similarity=0.174  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|+|+|+.|+.++..++..|.   +|+.+++.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~---~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGL---HVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCC---ccceecchh
Confidence            35689999999999999999988886   799988764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.28  E-value=0.14  Score=41.16  Aligned_cols=32  Identities=25%  Similarity=0.235  Sum_probs=29.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ||.|||.|.-|.+.|..|+++|+   +|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC---EEEEEECCc
Confidence            69999999999999999999998   899988763

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.23  E-value=0.13  Score=41.47  Aligned_cols=35  Identities=9%  Similarity=0.131  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|+|+|+-|+.++..++..|.   +|+++|.++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga---~vi~v~~~~   60 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSP   60 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc---cccccchHH
Confidence            34689999999999999999988886   899998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.00  E-value=0.18  Score=40.96  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|+|+|+.|+.++..++..|..  +|+++|.++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhccccc--ccccccchh
Confidence            356899999999999999999988853  688888764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=0.21  Score=39.80  Aligned_cols=37  Identities=27%  Similarity=0.269  Sum_probs=33.4

Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      +-.+|+++|+|-|.+|-.+|..++..|.+|++++..|
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3478999999999999999999999999999997653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.93  E-value=0.17  Score=36.60  Aligned_cols=38  Identities=13%  Similarity=0.166  Sum_probs=32.5

Q ss_pred             ccCCCCCcEEEEcCchHHHHH-HHHHHHcCCCCCcEEEEcCC
Q 010917           55 SFANENREFVIVGGGNAAGYA-ARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        55 ~~~~~~~~VvIIGgG~AGl~a-A~~L~~~g~~~~~V~lie~~   95 (497)
                      |++...++|-+||-|-+|+++ |..|.++|+   +|+--|..
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~---~VsGSD~~   41 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGY---QISGSDIA   41 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTC---EEEEEESC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            446677899999999999999 999999998   78877754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.14  Score=44.28  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.7

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +.+|+|||.|--|-.+|..|++.|..  +++|+|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCccc
Confidence            57999999999999999999999974  9999998754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=89.73  E-value=0.27  Score=39.65  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      ..+|+|+|+|+|-++--++..|.+.|.+++++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            467999999999999999999999999999987753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.68  E-value=0.38  Score=42.17  Aligned_cols=58  Identities=24%  Similarity=0.426  Sum_probs=42.7

Q ss_pred             CCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEc
Q 010917          216 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  277 (497)
Q Consensus       216 ~~~vvVvG~-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~  277 (497)
                      .|+|+|.|+ |++|-.++..|.+.|.+|+.+.|.+....   ....... ...+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence            478999996 99999999999999999999998765433   2222222 3445667777653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.57  E-value=0.2  Score=40.65  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ....|+|+|+|+-|+.++..++..|..  +|++.|.++
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~--~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGAS--RIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCc--eeeeeccch
Confidence            346899999999999999999999863  677777654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.49  E-value=0.19  Score=39.29  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=28.6

Q ss_pred             cEEEEc-CchHHHHHHHHHHHcCCCCCcEEEEcC
Q 010917           62 EFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSK   94 (497)
Q Consensus        62 ~VvIIG-gG~AGl~aA~~L~~~g~~~~~V~lie~   94 (497)
                      ||.||| +|.-|.++|..|..++. ..++.|+|-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEec
Confidence            899999 69999999999999987 557999884

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=89.37  E-value=0.11  Score=42.90  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=29.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      ++|+|+|+|..|.-+|..|++.|.+|+++.|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            47999999999999999999999999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.30  E-value=0.17  Score=41.44  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ..+|+|+|+|+.|+.++..++..|..  +|++++.++
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCH
T ss_pred             CCEEEEECCCccchhheecccccccc--ccccccccc
Confidence            47899999999999999999998862  789998764

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.23  E-value=0.11  Score=40.75  Aligned_cols=40  Identities=18%  Similarity=0.067  Sum_probs=33.4

Q ss_pred             HHHcCcEEEeCC--cEEEEecCCCEEEECCCcEEEeccEEec
Q 010917          139 YKEKGIEMIYQD--PVTSIDIEKQTLITNSGKLLKYGSLIVA  178 (497)
Q Consensus       139 ~~~~~v~~~~~~--~v~~i~~~~~~v~~~~g~~i~~d~lvlA  178 (497)
                      +++.+|+++.+.  .+..+|...+++.+.+|+++.||.+.+-
T Consensus        98 ~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          98 TENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             TSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             HHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            355689998764  5888999999999999999999998763

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=89.20  E-value=0.18  Score=46.41  Aligned_cols=33  Identities=15%  Similarity=0.121  Sum_probs=30.5

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .++|||+|..|+-+|..|++.|.+|.|++++..
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            489999999999999999999999999999853

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.08  E-value=0.24  Score=41.79  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHH
Q 010917           58 NENREFVIVGGGNAAGYAARTFV   80 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~   80 (497)
                      ...++|+|||+|-.+|=+|+.|.
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHH
T ss_pred             ccCceEEEECCCchhHhhhhhhc
Confidence            34689999999999999999887

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.64  E-value=0.21  Score=44.26  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             CCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ++.||+|+|| |.-|...+.+|.++|+   +|+++.+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCC
Confidence            3568999997 9999999999999998   799988754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.40  E-value=0.22  Score=43.85  Aligned_cols=36  Identities=14%  Similarity=0.327  Sum_probs=32.0

Q ss_pred             CCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           59 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        59 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      .++||+|+|| |.-|-..+..|.+.|+   +|+.+++.+.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH---PTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEECCCc
Confidence            4689999998 9999999999999998   8999998653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=88.37  E-value=0.27  Score=38.73  Aligned_cols=34  Identities=26%  Similarity=0.258  Sum_probs=31.2

Q ss_pred             CCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          216 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       216 ~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      -++|.||| .|..|.-+|..|.+.|.+|+++.+..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            47999999 69999999999999999999998765

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=88.15  E-value=0.3  Score=37.97  Aligned_cols=59  Identities=19%  Similarity=0.068  Sum_probs=42.6

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCC-hhh---hcCCCcHHHHHHHHHc
Q 010917          431 PKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-KAK---LQQASSVEEALEIARA  489 (497)
Q Consensus       431 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~  489 (497)
                      ..+.|+.++  +|+|+|+++++++++++...- .+++++.+++ ...   .+.|||..|.+....+
T Consensus        67 ~G~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~l~a  132 (140)
T d1mo9a3          67 SGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRA  132 (140)
T ss_dssp             GCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHHT
T ss_pred             CceEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHHHhc
Confidence            346777764  589999999888888877554 4578888876 333   4678999887754433

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.11  E-value=0.24  Score=41.05  Aligned_cols=37  Identities=14%  Similarity=0.094  Sum_probs=30.1

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ....+|+|+|+|+.|+.++..++..|.  .+|+++|..+
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga--~~Vi~~d~~~   60 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGA--AVVIVGDLNP   60 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcc--cceeeecccc
Confidence            345699999999999999999988875  3788888653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=0.28  Score=39.37  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ...+|+|+|+|+.|+.++..++..|.   ++++++..
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga---~~i~~~~~   63 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGA---HVVAFTTS   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccc---cchhhccc
Confidence            35789999999999999999988886   66677764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.86  E-value=0.34  Score=40.26  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      +|.|||.|++|+-+|..|++.|.+|+.++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            68999999999999999999999999987653

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.75  E-value=0.33  Score=40.75  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .....+||+.|+|.||+..|..|.+.+.+  ++.++|+..
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~--~i~~~D~~G   60 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKG   60 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhccc--ceEeeccee
Confidence            34567999999999999999999999875  899999874

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=87.66  E-value=0.21  Score=40.45  Aligned_cols=36  Identities=14%  Similarity=0.297  Sum_probs=30.0

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...++|+|+|+|-++-+++..|.+.+.   +|+|+.+..
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~---~i~I~nR~~   51 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQ---NIVLANRTF   51 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCc---eeeeccchH
Confidence            346899999999999999999987543   899998763

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.62  E-value=0.33  Score=39.42  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ....|+|+|+|+-|+.++..++..|..  +|+.+|.++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~~   64 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNK   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCc--eEEEecCcH
Confidence            345799999999999999999999853  799998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.56  E-value=0.32  Score=41.27  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHc--------------------CCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEH--------------------GMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~--------------------g~~~~~V~lie~~~   96 (497)
                      ..++|+|||+|-.+|=+|+.|.+.                    |.  .+|+++.+..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~--~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV--KTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC--CEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCC--CeEEEEEEcC
Confidence            468999999999999999999883                    44  3899999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.55  E-value=0.29  Score=39.35  Aligned_cols=39  Identities=26%  Similarity=0.201  Sum_probs=33.7

Q ss_pred             hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          212 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       212 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      ...++++|+|+|+|.+|.-.+..+...|.+|..+++.+.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            356789999999999999999998899999998887653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.48  E-value=0.31  Score=39.46  Aligned_cols=37  Identities=16%  Similarity=0.122  Sum_probs=30.6

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .....|+|+|+|+-|+.++..++..|..  +|+++|.++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~--~Vi~~d~~~   62 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGAS--RIIGVGTHK   62 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSCG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCc--eeeccCChH
Confidence            3346899999999999999999999863  688887653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.31  E-value=0.3  Score=39.89  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=29.0

Q ss_pred             eEEEE-cCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          218 KVVVV-GGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       218 ~vvVv-G~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      +|.|+ |+|.+|..+|..|++.|++|++..|.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68899 669999999999999999999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.28  E-value=0.29  Score=39.58  Aligned_cols=35  Identities=20%  Similarity=0.115  Sum_probs=28.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      ...+|+|+|+|+.|+.++..++..|..  .|++.+..
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~--~v~~~~~~   62 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIV   62 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCS--EEEEEESC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccc--eeeeeccH
Confidence            356899999999999999999998862  56666654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.18  E-value=0.24  Score=40.56  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             cEEEE-cCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIV-GGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvII-GgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ||.|| |+|.-|.+.|..|++.|+   +|++.++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~---~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH---EIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            68999 669999999999999999   899999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=87.16  E-value=0.3  Score=39.21  Aligned_cols=37  Identities=22%  Similarity=0.264  Sum_probs=32.6

Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .+++++|+|+|+|.+|+-++..+...|.+|.++++.+
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            4578999999999999999999999999998887653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.95  E-value=0.36  Score=37.74  Aligned_cols=33  Identities=12%  Similarity=0.185  Sum_probs=26.7

Q ss_pred             cEEEEc-CchHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 010917           62 EFVIVG-GGNAAGYAARTFVEH-GMADGRLCIVSKE   95 (497)
Q Consensus        62 ~VvIIG-gG~AGl~aA~~L~~~-g~~~~~V~lie~~   95 (497)
                      ||.||| +|.-|-+.|..|..+ +. ..++.|+|.+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence            799999 599999999988654 54 4589999854

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.78  E-value=0.38  Score=38.77  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ....|+|+|+|+.|+.++..++..+.  .+|+.++..+
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~--~~Vi~~~~~~   63 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGA--KRIIAVDLNP   63 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhh--chheeecchH
Confidence            34679999999999999999999875  3688887654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.77  E-value=0.25  Score=40.28  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=28.6

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      +|.|+|+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999998663

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=86.51  E-value=0.34  Score=44.91  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  251 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~  251 (497)
                      .++|||+|..|+-+|..|++.+ .+|.|+++++..
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            5999999999999999999988 699999999653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.33  E-value=0.37  Score=38.51  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=29.3

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...+|+|+|+|+.|+.++..++..|.   +|++++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~---~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL---NVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC---eEeccCCCH
Confidence            35689999999999999999888876   788887653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.31  E-value=0.44  Score=39.16  Aligned_cols=35  Identities=31%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             cCCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          215 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       215 ~~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      ++|+++|.| +|-+|.++|..|++.|.+|+++.|..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            689999998 69999999999999999999998874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=86.16  E-value=0.39  Score=38.35  Aligned_cols=31  Identities=26%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      +|.|||.|..|.-+|..|.+.|.+|+.++|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999999999999999988765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.50  E-value=0.42  Score=38.16  Aligned_cols=36  Identities=19%  Similarity=0.132  Sum_probs=32.0

Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .+++++|+|+|+|.+|+-++..+...|.+|..+.+.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            567899999999999999999999999998888654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.42  E-value=0.5  Score=38.12  Aligned_cols=36  Identities=25%  Similarity=0.186  Sum_probs=30.7

Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecC
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  248 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~  248 (497)
                      ++++++|+|+|+|.+|+-.+..+...|. +|.++.+.
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            5678999999999999999999999997 57776554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.34  E-value=0.29  Score=40.40  Aligned_cols=31  Identities=13%  Similarity=0.098  Sum_probs=27.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +|.|||.|.-|+..|..++ +|+   +|+.+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~---~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN---EVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS---EEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCC---cEEEEECCH
Confidence            6999999999999998775 587   899999875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=0.45  Score=39.45  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             CCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917          216 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHL  251 (497)
Q Consensus       216 ~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  251 (497)
                      -|+|+|.| +|.+|-.++..|.+.|.+|+++.|.+.-
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~   39 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhh
Confidence            47899999 5999999999999999999999987543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.18  E-value=0.41  Score=38.12  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      +++|-|||-|--|...|..|.++|+   +|+++|+++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~---~v~~~d~~~   34 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGY---LLNVFDLVQ   34 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCC---eEEEEECch
Confidence            3689999999999999999999998   799988763

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.03  E-value=0.46  Score=38.19  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=28.9

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...|+|+|+|+.|+.++..++..|..  .|++++.++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~--~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPA--TVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCC--EEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCc--ccccccchh
Confidence            46899999999999999999888853  677777653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.02  E-value=0.44  Score=37.89  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  248 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~  248 (497)
                      ..++++|||+|.+|..++..|...|. +++++.|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            57899999999999999999999997 58887765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.77  E-value=0.35  Score=39.21  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=27.9

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   95 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   95 (497)
                      -..++|+|+|+|-++-++++.|.+.+    +|+|+.+.
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~----~i~I~nR~   49 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN----NIIIANRT   49 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS----EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc----ceeeehhh
Confidence            34689999999999999999886543    79988775

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=84.64  E-value=0.43  Score=38.80  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  249 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~  249 (497)
                      .+++++|+|+|+|.+|.-++..+...|. +|+++.+.+
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            3578999999999999999999999997 678876643

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.62  E-value=0.048  Score=44.27  Aligned_cols=40  Identities=10%  Similarity=-0.144  Sum_probs=33.2

Q ss_pred             EeecccccccCcccccC--CCCcccccC---CCCchhhhcccccc
Q 010917           12 SVSNSLSFKHGLSLWCP--QSPSLHRIR---HSSAKNFQRRGFVV   51 (497)
Q Consensus        12 ~~~~~~~~~~g~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~   51 (497)
                      ..+||||.++|++|+.+  |..+|.+..   .+++|..++|+..+
T Consensus       116 ~~~NP~p~icGRVCP~~~~CE~~C~r~~~~~~pV~I~~LeRfa~D  160 (182)
T d1gtea1         116 FSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASE  160 (182)
T ss_dssp             HHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHH
T ss_pred             hccCchHHHHhccCCCcchHHHhCeecCCCCCCeeecHHHHHHHH
Confidence            35799999999999765  999998853   48999999988765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.51  E-value=0.58  Score=37.37  Aligned_cols=37  Identities=24%  Similarity=0.124  Sum_probs=32.3

Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      ++++++|+|+|+|.+|.-.+..+...|.++.++.+.+
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            5678999999999999999999999999988776654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=84.29  E-value=0.53  Score=37.21  Aligned_cols=37  Identities=27%  Similarity=0.264  Sum_probs=33.6

Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      +-.+|+++|+|=|..|--+|..++.+|.+|++++..|
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            3478999999999999999999999999999997654

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=83.96  E-value=0.49  Score=43.69  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  251 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~  251 (497)
                      .++|||+|..|+-+|..|++.+ .+|.|+++++..
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYE   53 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCC
Confidence            6899999999999999999876 799999998643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=0.62  Score=37.31  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             hccCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 010917          213 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  249 (497)
Q Consensus       213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~  249 (497)
                      ..++++|+|+|+|.+|+-.+..+..+|. +|.++++.+
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            4568899999999999999999999998 577776543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.63  E-value=0.71  Score=37.11  Aligned_cols=36  Identities=17%  Similarity=0.127  Sum_probs=29.7

Q ss_pred             CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ....|+|+|+|..|+.++..++..|..  +|+.++.++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~--~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAA--RIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCc--eEEeecCcH
Confidence            346799999999999999999998853  788887654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.33  E-value=0.63  Score=38.13  Aligned_cols=37  Identities=11%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             CCCCCcEEEEc-CchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           57 ANENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        57 ~~~~~~VvIIG-gG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      .-..|+|+|.| +|-.|..+|+.|+++|.   +|++++++.
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~---~V~~~~r~~   57 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKL   57 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc---chhhcccch
Confidence            34578999999 58889999999999997   899998874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=82.85  E-value=0.57  Score=37.48  Aligned_cols=35  Identities=29%  Similarity=0.242  Sum_probs=30.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  249 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~  249 (497)
                      +.++|+|+|+|-.|--++..|.+.|. +++++.|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            57899999999999999999999996 788887753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.65  E-value=0.76  Score=37.27  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.8

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .++++.|+|-|.+|-++|..+...|.+|..+.+.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            47899999999999999999999999999987653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.12  E-value=0.65  Score=36.40  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=27.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ||-|||-|.-|...|..|+++|+   +++++++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~---~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV---EVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC---EEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC---eEEEEcCch
Confidence            68999999999999999999998   787776543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.09  E-value=0.62  Score=37.42  Aligned_cols=36  Identities=11%  Similarity=0.103  Sum_probs=31.7

Q ss_pred             ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      .++++|+|+|+|-.+--++..|.+.+.+++++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            367899999999999999999999888999998763

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.51  E-value=0.75  Score=37.09  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      ++|+|+|+|+|-++--++..|.+.| +|+++.|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            6899999999999999999998777 899887753

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.51  E-value=0.19  Score=38.40  Aligned_cols=60  Identities=8%  Similarity=0.028  Sum_probs=39.4

Q ss_pred             cEEEEEEE--CCEEEEEEeecC-ChHHhh-HHHHHHhCCCCCC-hhhh--cCCCcHHHH---HHHHHccC
Q 010917          432 KIATFWID--SGKLKGVLVESG-SPEEFQ-LLPTLARSQPFVD-KAKL--QQASSVEEA---LEIARAAL  491 (497)
Q Consensus       432 ~~~~~~~~--~~~~~g~~~~~~-~~~~~~-~~~~~~~~~~~~~-~~~~--~~~~~~~~~---~~~~~~~~  491 (497)
                      .+.|+.++  +++|+|+++++. ++.++. .+..+++.+.+++ ...+  ..||+++|+   +..|++.+
T Consensus        52 g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~~~~yhPt~se~~~~l~~aA~~a  121 (126)
T d1nhpa3          52 AWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEA  121 (126)
T ss_dssp             EEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHHHHHHHH
T ss_pred             eeEEEEEECCCCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcCcccCCCCCchhHHHHHHHHHHH
Confidence            35566654  389999998764 366644 5556689998886 3333  457999886   55555443

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=81.39  E-value=0.88  Score=41.05  Aligned_cols=35  Identities=14%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             CCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           59 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        59 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ++|+|+|+|| |.-|-+.+..|.++|+   +|+++.++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~---~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC---eEEEEECCc
Confidence            4689999997 9999999999999998   798887653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.34  E-value=0.72  Score=36.52  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      ...|.|+|||-|.-|-.+|..|+..|.   +|++.|..+
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~---~V~v~e~dp   57 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGA---RVIITEIDP   57 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCC---eeEeeeccc
Confidence            456899999999999999999999987   899999875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=81.29  E-value=0.66  Score=36.62  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      +-..|++||+|=|..|-.+|..|+..|.   +|++.|.+|.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga---~V~V~E~DPi   57 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA---RVYITEIDPI   57 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSCHH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC---EEEEEecCch
Confidence            3456899999999999999999999987   8999998863

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=81.26  E-value=0.7  Score=36.04  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=29.7

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN  249 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~  249 (497)
                      ..++|.|||+|.+|.-+|..|+..+  .++.+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4578999999999999999999877  4799987653

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=81.24  E-value=0.49  Score=43.06  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .++|||+|..|+-+|..|++. .+|.|+++++.
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            699999999999999999986 89999999864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.13  E-value=1.3  Score=35.30  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             hccCCeEEEEcC-CHHHHHHHHHHHhCCCcEEEEecC
Q 010917          213 LEKAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       213 ~~~~~~vvVvG~-G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      +.++++|+|.|+ |.+|.-+...+...|.+|..+.++
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEEeccccccccccccccccCccccccccc
Confidence            457889999995 999999999999999998877644

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.97  E-value=1.4  Score=34.17  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=30.6

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917           61 REFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   96 (497)
Q Consensus        61 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   96 (497)
                      -+|.|||| |..|....+-|.++.|+..++..+..+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~   39 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE   39 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc
Confidence            58999999 9999999999988888777888876554

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=80.95  E-value=0.79  Score=34.54  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=30.5

Q ss_pred             cCCeEEEEcCCH-----------HHHHHHHHHHhCCCcEEEEecCCc
Q 010917          215 KAKKVVVVGGGY-----------IGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       215 ~~~~vvVvG~G~-----------~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      ..|+|+|+|+|+           .+.+++.+|.+.|.++.++...+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            458999999985           588899999999999999887753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=80.95  E-value=0.89  Score=41.01  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             cCCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917          215 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  249 (497)
Q Consensus       215 ~~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~  249 (497)
                      +.|+|+|+| +|++|-.++..|.+.|.+|+++.|.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            468899998 59999999999999999999998864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.73  E-value=0.89  Score=40.96  Aligned_cols=37  Identities=16%  Similarity=0.036  Sum_probs=33.0

Q ss_pred             ccCCeEEEEc-CCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917          214 EKAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENH  250 (497)
Q Consensus       214 ~~~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~~  250 (497)
                      .++|+|+|.| +|++|..++..|.+.|.+|..+.+...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4689999998 689999999999999999999987653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.45  E-value=0.65  Score=43.36  Aligned_cols=36  Identities=8%  Similarity=0.323  Sum_probs=32.5

Q ss_pred             CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917           60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   97 (497)
Q Consensus        60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   97 (497)
                      ..||+|||+|--|..+|..|+..|..  +++|+|.+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg--~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFR--QIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCC--CEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCCc
Confidence            46999999999999999999999974  8999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.36  E-value=1  Score=33.99  Aligned_cols=47  Identities=17%  Similarity=0.292  Sum_probs=34.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcC
Q 010917          217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  278 (497)
Q Consensus       217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~  278 (497)
                      |+++|+|.|..|.+++..|.  +.+|.++...+...             +.+.+.|+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~-------------~~~~~~~~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENVR-------------KKVLRSGANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHH-------------HHHHHTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHH-------------HHHHhcCcccccc
Confidence            57999999999999999995  45677776554211             2345678877654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=80.19  E-value=0.99  Score=37.11  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=30.9

Q ss_pred             cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917          215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  248 (497)
Q Consensus       215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~  248 (497)
                      .+++|.|||-|.+|-++|..+...|.+|..+.+.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            4789999999999999999999999999888654